Multiple sequence alignment - TraesCS2D01G174000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G174000 chr2D 100.000 3228 0 0 640 3867 117631093 117634320 0.000000e+00 5962.0
1 TraesCS2D01G174000 chr2D 98.456 1425 20 2 1647 3069 651422747 651421323 0.000000e+00 2508.0
2 TraesCS2D01G174000 chr2D 87.404 2088 195 40 700 2751 651431634 651433689 0.000000e+00 2337.0
3 TraesCS2D01G174000 chr2D 87.097 1798 170 29 814 2600 651574821 651576567 0.000000e+00 1978.0
4 TraesCS2D01G174000 chr2D 98.121 479 5 1 3061 3535 602301392 602300914 0.000000e+00 832.0
5 TraesCS2D01G174000 chr2D 98.494 332 5 0 3536 3867 397813755 397813424 1.550000e-163 586.0
6 TraesCS2D01G174000 chr2D 90.000 240 15 6 2820 3059 651433693 651433923 6.280000e-78 302.0
7 TraesCS2D01G174000 chr2D 100.000 93 0 0 1 93 117630454 117630546 5.140000e-39 172.0
8 TraesCS2D01G174000 chr2D 97.849 93 1 1 1 93 20042582 20042491 4.000000e-35 159.0
9 TraesCS2D01G174000 chr6D 98.377 2895 45 2 641 3533 69108865 69105971 0.000000e+00 5084.0
10 TraesCS2D01G174000 chr6D 98.160 489 9 0 640 1128 466592461 466591973 0.000000e+00 854.0
11 TraesCS2D01G174000 chr6D 98.943 473 5 0 3061 3533 63617771 63617299 0.000000e+00 846.0
12 TraesCS2D01G174000 chr6D 97.849 93 2 0 1 93 69109558 69109466 1.110000e-35 161.0
13 TraesCS2D01G174000 chr6D 97.849 93 1 1 1 93 63619786 63619695 4.000000e-35 159.0
14 TraesCS2D01G174000 chr6D 97.849 93 1 1 1 93 337780610 337780701 4.000000e-35 159.0
15 TraesCS2D01G174000 chr2A 89.892 2325 151 39 696 2995 776212833 776215098 0.000000e+00 2915.0
16 TraesCS2D01G174000 chr2A 86.939 2274 227 29 743 2998 776170840 776168619 0.000000e+00 2490.0
17 TraesCS2D01G174000 chr2B 87.118 2391 247 31 700 3062 781149604 781151961 0.000000e+00 2652.0
18 TraesCS2D01G174000 chr2B 92.828 1729 94 18 703 2422 780875257 780873550 0.000000e+00 2479.0
19 TraesCS2D01G174000 chr2B 86.286 1648 178 25 1359 2993 781085479 781083867 0.000000e+00 1748.0
20 TraesCS2D01G174000 chr2B 87.160 1176 97 30 1832 2993 780829667 780828532 0.000000e+00 1286.0
21 TraesCS2D01G174000 chr2B 89.919 615 49 11 2445 3059 780873501 780872900 0.000000e+00 780.0
22 TraesCS2D01G174000 chr2B 94.643 56 3 0 3011 3066 780828539 780828484 1.910000e-13 87.9
23 TraesCS2D01G174000 chr2B 94.643 56 3 0 3011 3066 781083874 781083819 1.910000e-13 87.9
24 TraesCS2D01G174000 chr4A 80.533 2250 314 67 700 2886 632615638 632617826 0.000000e+00 1615.0
25 TraesCS2D01G174000 chr5B 78.565 2286 368 72 781 3015 703859464 703857250 0.000000e+00 1395.0
26 TraesCS2D01G174000 chr5B 79.654 1504 233 35 781 2266 703804898 703803450 0.000000e+00 1014.0
27 TraesCS2D01G174000 chr5B 82.573 482 55 12 1806 2280 699615000 699614541 7.780000e-107 398.0
28 TraesCS2D01G174000 chrUn 90.260 924 84 6 1061 1981 23720253 23719333 0.000000e+00 1203.0
29 TraesCS2D01G174000 chrUn 85.993 921 75 15 2150 3069 23719033 23718166 0.000000e+00 937.0
30 TraesCS2D01G174000 chrUn 98.943 473 5 0 3061 3533 185407952 185407480 0.000000e+00 846.0
31 TraesCS2D01G174000 chr6B 80.721 1359 225 18 816 2166 698121810 698120481 0.000000e+00 1024.0
32 TraesCS2D01G174000 chr4D 98.364 489 8 0 640 1128 280249085 280248597 0.000000e+00 859.0
33 TraesCS2D01G174000 chr4D 97.704 479 11 0 3061 3539 102547279 102546801 0.000000e+00 824.0
34 TraesCS2D01G174000 chr4D 98.193 332 6 0 3536 3867 31625892 31625561 7.200000e-162 580.0
35 TraesCS2D01G174000 chr4D 97.910 335 7 0 3533 3867 339129449 339129783 7.200000e-162 580.0
36 TraesCS2D01G174000 chr4D 98.193 332 6 0 3536 3867 394705342 394705011 7.200000e-162 580.0
37 TraesCS2D01G174000 chr4D 98.193 332 6 0 3536 3867 498836225 498835894 7.200000e-162 580.0
38 TraesCS2D01G174000 chr4D 97.849 93 2 0 1 93 154782309 154782217 1.110000e-35 161.0
39 TraesCS2D01G174000 chr4D 97.849 93 1 1 1 93 80283553 80283462 4.000000e-35 159.0
40 TraesCS2D01G174000 chr3D 98.364 489 8 0 640 1128 68368730 68369218 0.000000e+00 859.0
41 TraesCS2D01G174000 chr3D 98.160 489 9 0 640 1128 116736027 116736515 0.000000e+00 854.0
42 TraesCS2D01G174000 chr3D 98.316 475 6 1 3061 3533 88942408 88941934 0.000000e+00 832.0
43 TraesCS2D01G174000 chr3D 98.795 332 4 0 3536 3867 278100473 278100142 3.330000e-165 592.0
44 TraesCS2D01G174000 chr5D 98.739 476 6 0 3061 3536 147621013 147620538 0.000000e+00 846.0
45 TraesCS2D01G174000 chr5D 97.849 93 1 1 1 93 147623277 147623186 4.000000e-35 159.0
46 TraesCS2D01G174000 chr5D 96.774 93 3 0 1 93 50538209 50538301 5.170000e-34 156.0
47 TraesCS2D01G174000 chr7D 98.309 473 8 0 3061 3533 103899138 103899610 0.000000e+00 830.0
48 TraesCS2D01G174000 chr7D 98.209 335 6 0 3533 3867 475815226 475815560 1.550000e-163 586.0
49 TraesCS2D01G174000 chr7D 96.774 93 3 0 1 93 287136204 287136112 5.170000e-34 156.0
50 TraesCS2D01G174000 chr1D 98.309 473 8 0 3061 3533 186667112 186667584 0.000000e+00 830.0
51 TraesCS2D01G174000 chr1D 98.209 335 5 1 3533 3867 224705334 224705667 5.570000e-163 584.0
52 TraesCS2D01G174000 chr1D 98.193 332 6 0 3536 3867 28457673 28457342 7.200000e-162 580.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G174000 chr2D 117630454 117634320 3866 False 3067.00 5962 100.0000 1 3867 2 chr2D.!!$F2 3866
1 TraesCS2D01G174000 chr2D 651421323 651422747 1424 True 2508.00 2508 98.4560 1647 3069 1 chr2D.!!$R4 1422
2 TraesCS2D01G174000 chr2D 651574821 651576567 1746 False 1978.00 1978 87.0970 814 2600 1 chr2D.!!$F1 1786
3 TraesCS2D01G174000 chr2D 651431634 651433923 2289 False 1319.50 2337 88.7020 700 3059 2 chr2D.!!$F3 2359
4 TraesCS2D01G174000 chr6D 69105971 69109558 3587 True 2622.50 5084 98.1130 1 3533 2 chr6D.!!$R3 3532
5 TraesCS2D01G174000 chr6D 63617299 63619786 2487 True 502.50 846 98.3960 1 3533 2 chr6D.!!$R2 3532
6 TraesCS2D01G174000 chr2A 776212833 776215098 2265 False 2915.00 2915 89.8920 696 2995 1 chr2A.!!$F1 2299
7 TraesCS2D01G174000 chr2A 776168619 776170840 2221 True 2490.00 2490 86.9390 743 2998 1 chr2A.!!$R1 2255
8 TraesCS2D01G174000 chr2B 781149604 781151961 2357 False 2652.00 2652 87.1180 700 3062 1 chr2B.!!$F1 2362
9 TraesCS2D01G174000 chr2B 780872900 780875257 2357 True 1629.50 2479 91.3735 703 3059 2 chr2B.!!$R2 2356
10 TraesCS2D01G174000 chr2B 781083819 781085479 1660 True 917.95 1748 90.4645 1359 3066 2 chr2B.!!$R3 1707
11 TraesCS2D01G174000 chr2B 780828484 780829667 1183 True 686.95 1286 90.9015 1832 3066 2 chr2B.!!$R1 1234
12 TraesCS2D01G174000 chr4A 632615638 632617826 2188 False 1615.00 1615 80.5330 700 2886 1 chr4A.!!$F1 2186
13 TraesCS2D01G174000 chr5B 703857250 703859464 2214 True 1395.00 1395 78.5650 781 3015 1 chr5B.!!$R3 2234
14 TraesCS2D01G174000 chr5B 703803450 703804898 1448 True 1014.00 1014 79.6540 781 2266 1 chr5B.!!$R2 1485
15 TraesCS2D01G174000 chrUn 23718166 23720253 2087 True 1070.00 1203 88.1265 1061 3069 2 chrUn.!!$R2 2008
16 TraesCS2D01G174000 chr6B 698120481 698121810 1329 True 1024.00 1024 80.7210 816 2166 1 chr6B.!!$R1 1350
17 TraesCS2D01G174000 chr5D 147620538 147623277 2739 True 502.50 846 98.2940 1 3536 2 chr5D.!!$R1 3535

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
779 1131 1.191535 TTCAGTCAATCGGTCGGGAT 58.808 50.000 0.00 0.0 0.00 3.85 F
1135 1519 0.031716 TCACCTGAGCTCCATAGGCT 60.032 55.000 16.55 0.0 43.26 4.58 F
1460 1853 1.205655 CCAGGAGCTTGAGTTCATCGA 59.794 52.381 0.00 0.0 0.00 3.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2267 4000 0.383983 GCAATGCGCATCACTCGATC 60.384 55.000 25.53 3.1 41.79 3.69 R
2547 4338 2.180017 GCGGCTTGGCACATGAAG 59.820 61.111 0.00 0.0 39.30 3.02 R
3328 5138 1.745489 GGACGGCAAAGAAGCGGAT 60.745 57.895 0.00 0.0 38.12 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.030805 GCAGACGGCAAAGAGACAAAAT 60.031 45.455 0.00 0.00 43.97 1.82
87 88 5.454755 CGTTATCTCTTCTCTCCCTCTCTCT 60.455 48.000 0.00 0.00 0.00 3.10
779 1131 1.191535 TTCAGTCAATCGGTCGGGAT 58.808 50.000 0.00 0.00 0.00 3.85
1135 1519 0.031716 TCACCTGAGCTCCATAGGCT 60.032 55.000 16.55 0.00 43.26 4.58
1188 1572 2.365293 GACCCAATGCCTTGAGTTTTGT 59.635 45.455 2.97 0.00 34.04 2.83
1314 1707 2.092838 GCTTACGCTCGAATATCATGCC 59.907 50.000 0.00 0.00 0.00 4.40
1460 1853 1.205655 CCAGGAGCTTGAGTTCATCGA 59.794 52.381 0.00 0.00 0.00 3.59
1804 2998 3.119743 GCATGTATGTTCTTGCTGCAGAA 60.120 43.478 20.43 2.96 36.18 3.02
1874 3068 2.213499 CTGACCTCTGTGCGTCTTTTT 58.787 47.619 0.00 0.00 0.00 1.94
1900 3094 4.511617 TCTTCAGTGAGTGTGATCTGAC 57.488 45.455 0.00 0.00 36.80 3.51
2267 4000 1.813102 AGGAAATCCCTGGCCTCTAG 58.187 55.000 3.32 0.00 45.61 2.43
2308 4048 6.924111 TGCCCTCTTGATGAAAATTCTTTAC 58.076 36.000 0.00 0.00 0.00 2.01
2547 4338 4.870426 TCATTGCTTGAAGTTATCTCGACC 59.130 41.667 0.00 0.00 0.00 4.79
3174 4984 7.810766 TCTGTGTTTGATTTTCTGTGAAAAC 57.189 32.000 7.50 3.96 0.00 2.43
3259 5069 1.538047 CAAAGAGCCTGCAGCCTTTA 58.462 50.000 19.51 0.00 45.47 1.85
3328 5138 5.373222 ACACTAACACTACTCATTTTGCCA 58.627 37.500 0.00 0.00 0.00 4.92
3490 5300 2.331893 CCGCCGTTCATGCCTTTGA 61.332 57.895 0.00 0.00 0.00 2.69
3533 5343 4.744795 AAGTAGCTGATTCCTGTAGTGG 57.255 45.455 0.00 0.00 0.00 4.00
3536 5346 3.618690 AGCTGATTCCTGTAGTGGTTC 57.381 47.619 0.00 0.00 0.00 3.62
3537 5347 2.237392 AGCTGATTCCTGTAGTGGTTCC 59.763 50.000 0.00 0.00 0.00 3.62
3538 5348 2.681097 GCTGATTCCTGTAGTGGTTCCC 60.681 54.545 0.00 0.00 0.00 3.97
3539 5349 1.553248 TGATTCCTGTAGTGGTTCCCG 59.447 52.381 0.00 0.00 0.00 5.14
3540 5350 0.909623 ATTCCTGTAGTGGTTCCCGG 59.090 55.000 0.00 0.00 0.00 5.73
3541 5351 0.472352 TTCCTGTAGTGGTTCCCGGT 60.472 55.000 0.00 0.00 0.00 5.28
3542 5352 0.901580 TCCTGTAGTGGTTCCCGGTC 60.902 60.000 0.00 0.00 0.00 4.79
3543 5353 1.595357 CTGTAGTGGTTCCCGGTCC 59.405 63.158 0.00 0.05 0.00 4.46
3544 5354 2.221906 CTGTAGTGGTTCCCGGTCCG 62.222 65.000 3.60 3.60 0.00 4.79
3545 5355 1.978617 GTAGTGGTTCCCGGTCCGA 60.979 63.158 14.39 0.00 0.00 4.55
3546 5356 1.228831 TAGTGGTTCCCGGTCCGAA 60.229 57.895 14.39 0.00 0.00 4.30
3547 5357 1.252904 TAGTGGTTCCCGGTCCGAAG 61.253 60.000 14.39 3.63 0.00 3.79
3548 5358 4.011517 TGGTTCCCGGTCCGAAGC 62.012 66.667 14.39 10.36 38.05 3.86
3549 5359 3.703127 GGTTCCCGGTCCGAAGCT 61.703 66.667 14.39 0.00 35.38 3.74
3550 5360 2.434359 GTTCCCGGTCCGAAGCTG 60.434 66.667 14.39 0.00 0.00 4.24
3551 5361 2.920912 TTCCCGGTCCGAAGCTGT 60.921 61.111 14.39 0.00 0.00 4.40
3552 5362 3.234630 TTCCCGGTCCGAAGCTGTG 62.235 63.158 14.39 0.00 0.00 3.66
3553 5363 4.760047 CCCGGTCCGAAGCTGTGG 62.760 72.222 14.39 0.00 0.00 4.17
3554 5364 3.691342 CCGGTCCGAAGCTGTGGA 61.691 66.667 14.39 3.12 0.00 4.02
3555 5365 2.579201 CGGTCCGAAGCTGTGGAT 59.421 61.111 4.91 0.00 36.48 3.41
3556 5366 1.811266 CGGTCCGAAGCTGTGGATG 60.811 63.158 4.91 3.52 36.48 3.51
3557 5367 1.596934 GGTCCGAAGCTGTGGATGA 59.403 57.895 10.16 0.00 36.48 2.92
3558 5368 0.460987 GGTCCGAAGCTGTGGATGAG 60.461 60.000 10.16 0.00 36.48 2.90
3559 5369 0.532573 GTCCGAAGCTGTGGATGAGA 59.467 55.000 10.16 0.00 36.48 3.27
3560 5370 0.820226 TCCGAAGCTGTGGATGAGAG 59.180 55.000 3.12 0.00 0.00 3.20
3561 5371 0.820226 CCGAAGCTGTGGATGAGAGA 59.180 55.000 0.00 0.00 0.00 3.10
3562 5372 1.202394 CCGAAGCTGTGGATGAGAGAG 60.202 57.143 0.00 0.00 0.00 3.20
3563 5373 1.202394 CGAAGCTGTGGATGAGAGAGG 60.202 57.143 0.00 0.00 0.00 3.69
3564 5374 1.830477 GAAGCTGTGGATGAGAGAGGT 59.170 52.381 0.00 0.00 0.00 3.85
3565 5375 1.949799 AGCTGTGGATGAGAGAGGTT 58.050 50.000 0.00 0.00 0.00 3.50
3566 5376 1.554160 AGCTGTGGATGAGAGAGGTTG 59.446 52.381 0.00 0.00 0.00 3.77
3567 5377 1.552337 GCTGTGGATGAGAGAGGTTGA 59.448 52.381 0.00 0.00 0.00 3.18
3568 5378 2.170187 GCTGTGGATGAGAGAGGTTGAT 59.830 50.000 0.00 0.00 0.00 2.57
3569 5379 3.740764 GCTGTGGATGAGAGAGGTTGATC 60.741 52.174 0.00 0.00 0.00 2.92
3570 5380 3.705579 CTGTGGATGAGAGAGGTTGATCT 59.294 47.826 0.00 0.00 0.00 2.75
3571 5381 3.703556 TGTGGATGAGAGAGGTTGATCTC 59.296 47.826 0.00 0.00 45.10 2.75
3581 5391 6.227298 GAGAGGTTGATCTCTTGTAATGGA 57.773 41.667 0.00 0.00 43.51 3.41
3582 5392 5.983540 AGAGGTTGATCTCTTGTAATGGAC 58.016 41.667 0.00 0.00 40.93 4.02
3583 5393 4.759782 AGGTTGATCTCTTGTAATGGACG 58.240 43.478 0.00 0.00 0.00 4.79
3584 5394 3.871594 GGTTGATCTCTTGTAATGGACGG 59.128 47.826 0.00 0.00 0.00 4.79
3585 5395 3.179443 TGATCTCTTGTAATGGACGGC 57.821 47.619 0.00 0.00 0.00 5.68
3586 5396 2.128035 GATCTCTTGTAATGGACGGCG 58.872 52.381 4.80 4.80 0.00 6.46
3587 5397 0.174845 TCTCTTGTAATGGACGGCGG 59.825 55.000 13.24 0.00 0.00 6.13
3588 5398 1.429148 CTCTTGTAATGGACGGCGGC 61.429 60.000 13.24 8.60 0.00 6.53
3589 5399 2.808958 CTTGTAATGGACGGCGGCG 61.809 63.158 31.06 31.06 0.00 6.46
3590 5400 3.592856 TTGTAATGGACGGCGGCGT 62.593 57.895 38.13 38.13 0.00 5.68
3591 5401 3.259751 GTAATGGACGGCGGCGTC 61.260 66.667 44.98 44.98 38.09 5.19
3592 5402 4.858433 TAATGGACGGCGGCGTCG 62.858 66.667 44.31 33.62 39.56 5.12
3601 5411 4.944372 GCGGCGTCGGGGTATCAG 62.944 72.222 13.05 0.00 36.79 2.90
3602 5412 4.944372 CGGCGTCGGGGTATCAGC 62.944 72.222 0.00 0.00 0.00 4.26
3603 5413 3.537874 GGCGTCGGGGTATCAGCT 61.538 66.667 0.00 0.00 0.00 4.24
3604 5414 2.027751 GCGTCGGGGTATCAGCTC 59.972 66.667 0.00 0.00 0.00 4.09
3605 5415 2.728817 CGTCGGGGTATCAGCTCC 59.271 66.667 0.00 0.00 0.00 4.70
3606 5416 2.728817 GTCGGGGTATCAGCTCCG 59.271 66.667 2.99 2.99 43.42 4.63
3607 5417 2.520982 TCGGGGTATCAGCTCCGG 60.521 66.667 9.16 0.00 42.44 5.14
3608 5418 4.301027 CGGGGTATCAGCTCCGGC 62.301 72.222 0.00 0.00 38.93 6.13
3609 5419 3.161450 GGGGTATCAGCTCCGGCA 61.161 66.667 0.00 0.00 41.70 5.69
3610 5420 2.520536 GGGGTATCAGCTCCGGCAT 61.521 63.158 0.00 0.00 41.70 4.40
3611 5421 1.302033 GGGTATCAGCTCCGGCATG 60.302 63.158 0.00 0.00 41.70 4.06
3612 5422 1.302033 GGTATCAGCTCCGGCATGG 60.302 63.158 0.00 0.00 41.70 3.66
3613 5423 1.447643 GTATCAGCTCCGGCATGGT 59.552 57.895 0.00 0.00 41.70 3.55
3614 5424 0.882042 GTATCAGCTCCGGCATGGTG 60.882 60.000 0.00 5.66 41.70 4.17
3615 5425 2.043604 TATCAGCTCCGGCATGGTGG 62.044 60.000 16.71 3.97 41.70 4.61
3616 5426 4.100084 CAGCTCCGGCATGGTGGA 62.100 66.667 0.00 0.00 41.70 4.02
3619 5429 3.083349 CTCCGGCATGGTGGAGGA 61.083 66.667 0.00 0.00 46.55 3.71
3620 5430 3.083349 TCCGGCATGGTGGAGGAG 61.083 66.667 0.00 0.00 39.52 3.69
3621 5431 4.181010 CCGGCATGGTGGAGGAGG 62.181 72.222 0.00 0.00 0.00 4.30
3622 5432 3.083349 CGGCATGGTGGAGGAGGA 61.083 66.667 0.00 0.00 0.00 3.71
3623 5433 2.592308 GGCATGGTGGAGGAGGAC 59.408 66.667 0.00 0.00 0.00 3.85
3624 5434 2.187946 GCATGGTGGAGGAGGACG 59.812 66.667 0.00 0.00 0.00 4.79
3625 5435 2.903357 CATGGTGGAGGAGGACGG 59.097 66.667 0.00 0.00 0.00 4.79
3626 5436 3.083997 ATGGTGGAGGAGGACGGC 61.084 66.667 0.00 0.00 0.00 5.68
3633 5443 4.779733 AGGAGGACGGCGGTGGAT 62.780 66.667 13.24 0.00 0.00 3.41
3634 5444 4.530857 GGAGGACGGCGGTGGATG 62.531 72.222 13.24 0.00 0.00 3.51
3635 5445 4.530857 GAGGACGGCGGTGGATGG 62.531 72.222 13.24 0.00 0.00 3.51
3645 5455 4.796495 GTGGATGGGGTGGCGGAC 62.796 72.222 0.00 0.00 0.00 4.79
3670 5480 4.716977 GACGGAGGAGGGTGGGGT 62.717 72.222 0.00 0.00 0.00 4.95
3673 5483 4.348495 GGAGGAGGGTGGGGTGGA 62.348 72.222 0.00 0.00 0.00 4.02
3674 5484 2.689034 GAGGAGGGTGGGGTGGAG 60.689 72.222 0.00 0.00 0.00 3.86
3675 5485 3.208592 AGGAGGGTGGGGTGGAGA 61.209 66.667 0.00 0.00 0.00 3.71
3676 5486 2.689034 GGAGGGTGGGGTGGAGAG 60.689 72.222 0.00 0.00 0.00 3.20
3677 5487 2.689034 GAGGGTGGGGTGGAGAGG 60.689 72.222 0.00 0.00 0.00 3.69
3678 5488 4.354943 AGGGTGGGGTGGAGAGGG 62.355 72.222 0.00 0.00 0.00 4.30
3679 5489 4.677151 GGGTGGGGTGGAGAGGGT 62.677 72.222 0.00 0.00 0.00 4.34
3680 5490 3.330720 GGTGGGGTGGAGAGGGTG 61.331 72.222 0.00 0.00 0.00 4.61
3681 5491 2.529389 GTGGGGTGGAGAGGGTGT 60.529 66.667 0.00 0.00 0.00 4.16
3682 5492 2.154074 GTGGGGTGGAGAGGGTGTT 61.154 63.158 0.00 0.00 0.00 3.32
3683 5493 1.386772 TGGGGTGGAGAGGGTGTTT 60.387 57.895 0.00 0.00 0.00 2.83
3684 5494 0.996762 TGGGGTGGAGAGGGTGTTTT 60.997 55.000 0.00 0.00 0.00 2.43
3685 5495 0.187606 GGGGTGGAGAGGGTGTTTTT 59.812 55.000 0.00 0.00 0.00 1.94
3686 5496 1.328279 GGGTGGAGAGGGTGTTTTTG 58.672 55.000 0.00 0.00 0.00 2.44
3687 5497 0.673985 GGTGGAGAGGGTGTTTTTGC 59.326 55.000 0.00 0.00 0.00 3.68
3688 5498 0.310854 GTGGAGAGGGTGTTTTTGCG 59.689 55.000 0.00 0.00 0.00 4.85
3689 5499 1.285950 GGAGAGGGTGTTTTTGCGC 59.714 57.895 0.00 0.00 0.00 6.09
3690 5500 1.285950 GAGAGGGTGTTTTTGCGCC 59.714 57.895 4.18 0.00 38.26 6.53
3694 5504 2.656973 GGTGTTTTTGCGCCCACG 60.657 61.111 4.18 0.00 44.07 4.94
3695 5505 2.656973 GTGTTTTTGCGCCCACGG 60.657 61.111 4.18 0.00 40.57 4.94
3696 5506 2.829003 TGTTTTTGCGCCCACGGA 60.829 55.556 4.18 0.00 40.57 4.69
3697 5507 2.050442 GTTTTTGCGCCCACGGAG 60.050 61.111 4.18 0.00 42.06 4.63
3699 5509 1.227883 TTTTTGCGCCCACGGAGTA 60.228 52.632 4.18 0.00 41.61 2.59
3700 5510 1.508808 TTTTTGCGCCCACGGAGTAC 61.509 55.000 4.18 0.00 41.61 2.73
3714 5524 2.640184 GGAGTACGAATGGGGAAAAGG 58.360 52.381 0.00 0.00 0.00 3.11
3715 5525 2.640184 GAGTACGAATGGGGAAAAGGG 58.360 52.381 0.00 0.00 0.00 3.95
3716 5526 2.237893 GAGTACGAATGGGGAAAAGGGA 59.762 50.000 0.00 0.00 0.00 4.20
3717 5527 2.238898 AGTACGAATGGGGAAAAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
3718 5528 0.331616 ACGAATGGGGAAAAGGGAGG 59.668 55.000 0.00 0.00 0.00 4.30
3719 5529 0.331616 CGAATGGGGAAAAGGGAGGT 59.668 55.000 0.00 0.00 0.00 3.85
3720 5530 1.562475 CGAATGGGGAAAAGGGAGGTA 59.438 52.381 0.00 0.00 0.00 3.08
3721 5531 2.421529 CGAATGGGGAAAAGGGAGGTAG 60.422 54.545 0.00 0.00 0.00 3.18
3722 5532 2.680439 ATGGGGAAAAGGGAGGTAGA 57.320 50.000 0.00 0.00 0.00 2.59
3723 5533 1.966845 TGGGGAAAAGGGAGGTAGAG 58.033 55.000 0.00 0.00 0.00 2.43
3724 5534 1.439543 TGGGGAAAAGGGAGGTAGAGA 59.560 52.381 0.00 0.00 0.00 3.10
3725 5535 2.120312 GGGGAAAAGGGAGGTAGAGAG 58.880 57.143 0.00 0.00 0.00 3.20
3726 5536 2.120312 GGGAAAAGGGAGGTAGAGAGG 58.880 57.143 0.00 0.00 0.00 3.69
3727 5537 2.292984 GGGAAAAGGGAGGTAGAGAGGA 60.293 54.545 0.00 0.00 0.00 3.71
3728 5538 3.451890 GGAAAAGGGAGGTAGAGAGGAA 58.548 50.000 0.00 0.00 0.00 3.36
3729 5539 3.452990 GGAAAAGGGAGGTAGAGAGGAAG 59.547 52.174 0.00 0.00 0.00 3.46
3730 5540 2.858787 AAGGGAGGTAGAGAGGAAGG 57.141 55.000 0.00 0.00 0.00 3.46
3731 5541 0.938192 AGGGAGGTAGAGAGGAAGGG 59.062 60.000 0.00 0.00 0.00 3.95
3732 5542 0.105401 GGGAGGTAGAGAGGAAGGGG 60.105 65.000 0.00 0.00 0.00 4.79
3733 5543 0.105401 GGAGGTAGAGAGGAAGGGGG 60.105 65.000 0.00 0.00 0.00 5.40
3754 5564 3.333414 CCATGTATTCAGGGCGCG 58.667 61.111 0.00 0.00 38.67 6.86
3755 5565 2.633657 CATGTATTCAGGGCGCGC 59.366 61.111 25.94 25.94 0.00 6.86
3756 5566 1.889105 CATGTATTCAGGGCGCGCT 60.889 57.895 32.29 22.73 0.00 5.92
3757 5567 1.153168 ATGTATTCAGGGCGCGCTT 60.153 52.632 32.29 17.16 0.00 4.68
3758 5568 1.439353 ATGTATTCAGGGCGCGCTTG 61.439 55.000 32.29 27.26 0.00 4.01
3759 5569 2.106683 GTATTCAGGGCGCGCTTGT 61.107 57.895 32.29 15.38 0.00 3.16
3760 5570 1.813753 TATTCAGGGCGCGCTTGTC 60.814 57.895 32.29 14.29 0.00 3.18
3761 5571 2.238847 TATTCAGGGCGCGCTTGTCT 62.239 55.000 32.29 19.46 0.00 3.41
3762 5572 4.742201 TCAGGGCGCGCTTGTCTC 62.742 66.667 32.29 13.03 0.00 3.36
3764 5574 4.314440 AGGGCGCGCTTGTCTCAA 62.314 61.111 32.29 0.00 0.00 3.02
3765 5575 3.353836 GGGCGCGCTTGTCTCAAA 61.354 61.111 32.29 0.00 0.00 2.69
3766 5576 2.690778 GGGCGCGCTTGTCTCAAAT 61.691 57.895 32.29 0.00 0.00 2.32
3767 5577 1.512734 GGCGCGCTTGTCTCAAATG 60.513 57.895 32.29 0.00 0.00 2.32
3768 5578 2.148365 GCGCGCTTGTCTCAAATGC 61.148 57.895 26.67 0.00 0.00 3.56
3772 5582 3.984292 GCTTGTCTCAAATGCGAGG 57.016 52.632 0.00 0.00 33.59 4.63
3773 5583 1.442769 GCTTGTCTCAAATGCGAGGA 58.557 50.000 0.00 0.00 33.59 3.71
3774 5584 1.806542 GCTTGTCTCAAATGCGAGGAA 59.193 47.619 0.00 0.00 33.59 3.36
3775 5585 2.226437 GCTTGTCTCAAATGCGAGGAAA 59.774 45.455 0.00 0.00 33.59 3.13
3776 5586 3.119708 GCTTGTCTCAAATGCGAGGAAAT 60.120 43.478 0.00 0.00 33.59 2.17
3777 5587 4.616835 GCTTGTCTCAAATGCGAGGAAATT 60.617 41.667 0.00 0.00 33.59 1.82
3778 5588 5.452078 TTGTCTCAAATGCGAGGAAATTT 57.548 34.783 0.00 0.00 33.59 1.82
3779 5589 6.567687 TTGTCTCAAATGCGAGGAAATTTA 57.432 33.333 0.00 0.00 33.59 1.40
3780 5590 5.938322 TGTCTCAAATGCGAGGAAATTTAC 58.062 37.500 0.00 0.00 33.59 2.01
3781 5591 5.471797 TGTCTCAAATGCGAGGAAATTTACA 59.528 36.000 2.58 0.00 33.59 2.41
3782 5592 6.016693 TGTCTCAAATGCGAGGAAATTTACAA 60.017 34.615 2.58 0.00 33.59 2.41
3783 5593 6.861055 GTCTCAAATGCGAGGAAATTTACAAA 59.139 34.615 2.58 0.00 33.59 2.83
3784 5594 6.861055 TCTCAAATGCGAGGAAATTTACAAAC 59.139 34.615 2.58 0.00 33.59 2.93
3785 5595 6.744112 TCAAATGCGAGGAAATTTACAAACT 58.256 32.000 2.58 0.00 0.00 2.66
3786 5596 7.206687 TCAAATGCGAGGAAATTTACAAACTT 58.793 30.769 2.58 0.00 0.00 2.66
3787 5597 8.353684 TCAAATGCGAGGAAATTTACAAACTTA 58.646 29.630 2.58 0.00 0.00 2.24
3788 5598 8.638565 CAAATGCGAGGAAATTTACAAACTTAG 58.361 33.333 2.58 0.00 0.00 2.18
3789 5599 5.695818 TGCGAGGAAATTTACAAACTTAGC 58.304 37.500 2.58 0.00 0.00 3.09
3790 5600 5.093457 GCGAGGAAATTTACAAACTTAGCC 58.907 41.667 2.58 0.00 0.00 3.93
3791 5601 5.637809 CGAGGAAATTTACAAACTTAGCCC 58.362 41.667 2.58 0.00 0.00 5.19
3792 5602 5.392703 CGAGGAAATTTACAAACTTAGCCCC 60.393 44.000 2.58 0.00 0.00 5.80
3793 5603 4.775780 AGGAAATTTACAAACTTAGCCCCC 59.224 41.667 2.58 0.00 0.00 5.40
3794 5604 4.381185 GGAAATTTACAAACTTAGCCCCCG 60.381 45.833 0.00 0.00 0.00 5.73
3795 5605 2.955342 TTTACAAACTTAGCCCCCGT 57.045 45.000 0.00 0.00 0.00 5.28
3796 5606 2.955342 TTACAAACTTAGCCCCCGTT 57.045 45.000 0.00 0.00 0.00 4.44
3797 5607 2.955342 TACAAACTTAGCCCCCGTTT 57.045 45.000 0.00 0.00 0.00 3.60
3798 5608 1.612676 ACAAACTTAGCCCCCGTTTC 58.387 50.000 0.00 0.00 0.00 2.78
3799 5609 1.133730 ACAAACTTAGCCCCCGTTTCA 60.134 47.619 0.00 0.00 0.00 2.69
3800 5610 1.957877 CAAACTTAGCCCCCGTTTCAA 59.042 47.619 0.00 0.00 0.00 2.69
3801 5611 2.362717 CAAACTTAGCCCCCGTTTCAAA 59.637 45.455 0.00 0.00 0.00 2.69
3802 5612 2.597578 ACTTAGCCCCCGTTTCAAAT 57.402 45.000 0.00 0.00 0.00 2.32
3803 5613 2.884320 ACTTAGCCCCCGTTTCAAATT 58.116 42.857 0.00 0.00 0.00 1.82
3804 5614 3.236047 ACTTAGCCCCCGTTTCAAATTT 58.764 40.909 0.00 0.00 0.00 1.82
3805 5615 3.257375 ACTTAGCCCCCGTTTCAAATTTC 59.743 43.478 0.00 0.00 0.00 2.17
3806 5616 2.009681 AGCCCCCGTTTCAAATTTCT 57.990 45.000 0.00 0.00 0.00 2.52
3807 5617 3.163616 AGCCCCCGTTTCAAATTTCTA 57.836 42.857 0.00 0.00 0.00 2.10
3808 5618 2.823747 AGCCCCCGTTTCAAATTTCTAC 59.176 45.455 0.00 0.00 0.00 2.59
3809 5619 2.823747 GCCCCCGTTTCAAATTTCTACT 59.176 45.455 0.00 0.00 0.00 2.57
3810 5620 4.011698 GCCCCCGTTTCAAATTTCTACTA 58.988 43.478 0.00 0.00 0.00 1.82
3811 5621 4.142534 GCCCCCGTTTCAAATTTCTACTAC 60.143 45.833 0.00 0.00 0.00 2.73
3812 5622 5.005094 CCCCCGTTTCAAATTTCTACTACA 58.995 41.667 0.00 0.00 0.00 2.74
3813 5623 5.650703 CCCCCGTTTCAAATTTCTACTACAT 59.349 40.000 0.00 0.00 0.00 2.29
3814 5624 6.183360 CCCCCGTTTCAAATTTCTACTACATC 60.183 42.308 0.00 0.00 0.00 3.06
3815 5625 6.373216 CCCCGTTTCAAATTTCTACTACATCA 59.627 38.462 0.00 0.00 0.00 3.07
3816 5626 7.241376 CCCGTTTCAAATTTCTACTACATCAC 58.759 38.462 0.00 0.00 0.00 3.06
3817 5627 7.094975 CCCGTTTCAAATTTCTACTACATCACA 60.095 37.037 0.00 0.00 0.00 3.58
3818 5628 8.286800 CCGTTTCAAATTTCTACTACATCACAA 58.713 33.333 0.00 0.00 0.00 3.33
3819 5629 9.103048 CGTTTCAAATTTCTACTACATCACAAC 57.897 33.333 0.00 0.00 0.00 3.32
3820 5630 9.944663 GTTTCAAATTTCTACTACATCACAACA 57.055 29.630 0.00 0.00 0.00 3.33
3822 5632 9.944663 TTCAAATTTCTACTACATCACAACAAC 57.055 29.630 0.00 0.00 0.00 3.32
3823 5633 9.114952 TCAAATTTCTACTACATCACAACAACA 57.885 29.630 0.00 0.00 0.00 3.33
3824 5634 9.897744 CAAATTTCTACTACATCACAACAACAT 57.102 29.630 0.00 0.00 0.00 2.71
3828 5638 9.772973 TTTCTACTACATCACAACAACATTAGT 57.227 29.630 0.00 0.00 0.00 2.24
3829 5639 8.981724 TCTACTACATCACAACAACATTAGTC 57.018 34.615 0.00 0.00 0.00 2.59
3830 5640 8.581578 TCTACTACATCACAACAACATTAGTCA 58.418 33.333 0.00 0.00 0.00 3.41
3831 5641 7.658179 ACTACATCACAACAACATTAGTCAG 57.342 36.000 0.00 0.00 0.00 3.51
3832 5642 7.217200 ACTACATCACAACAACATTAGTCAGT 58.783 34.615 0.00 0.00 0.00 3.41
3833 5643 6.942532 ACATCACAACAACATTAGTCAGTT 57.057 33.333 0.00 0.00 0.00 3.16
3842 5652 5.126067 CAACATTAGTCAGTTGGGGATAGG 58.874 45.833 0.00 0.00 40.97 2.57
3843 5653 4.631234 ACATTAGTCAGTTGGGGATAGGA 58.369 43.478 0.00 0.00 0.00 2.94
3844 5654 4.409247 ACATTAGTCAGTTGGGGATAGGAC 59.591 45.833 0.00 0.00 0.00 3.85
3845 5655 1.486211 AGTCAGTTGGGGATAGGACG 58.514 55.000 0.00 0.00 0.00 4.79
3846 5656 0.464452 GTCAGTTGGGGATAGGACGG 59.536 60.000 0.00 0.00 0.00 4.79
3847 5657 0.042131 TCAGTTGGGGATAGGACGGT 59.958 55.000 0.00 0.00 0.00 4.83
3848 5658 1.288633 TCAGTTGGGGATAGGACGGTA 59.711 52.381 0.00 0.00 0.00 4.02
3849 5659 2.112998 CAGTTGGGGATAGGACGGTAA 58.887 52.381 0.00 0.00 0.00 2.85
3850 5660 2.704065 CAGTTGGGGATAGGACGGTAAT 59.296 50.000 0.00 0.00 0.00 1.89
3851 5661 2.970640 AGTTGGGGATAGGACGGTAATC 59.029 50.000 0.00 0.00 0.00 1.75
3852 5662 2.970640 GTTGGGGATAGGACGGTAATCT 59.029 50.000 0.00 0.00 0.00 2.40
3853 5663 2.885616 TGGGGATAGGACGGTAATCTC 58.114 52.381 0.00 0.00 0.00 2.75
3854 5664 1.817447 GGGGATAGGACGGTAATCTCG 59.183 57.143 0.00 0.00 0.00 4.04
3855 5665 1.201880 GGGATAGGACGGTAATCTCGC 59.798 57.143 0.00 0.00 0.00 5.03
3856 5666 1.884579 GGATAGGACGGTAATCTCGCA 59.115 52.381 0.00 0.00 0.00 5.10
3857 5667 2.492484 GGATAGGACGGTAATCTCGCAT 59.508 50.000 0.00 0.00 0.00 4.73
3858 5668 3.693085 GGATAGGACGGTAATCTCGCATA 59.307 47.826 0.00 0.00 0.00 3.14
3859 5669 4.438472 GGATAGGACGGTAATCTCGCATAC 60.438 50.000 0.00 0.00 0.00 2.39
3860 5670 2.304092 AGGACGGTAATCTCGCATACA 58.696 47.619 0.00 0.00 0.00 2.29
3861 5671 2.034305 AGGACGGTAATCTCGCATACAC 59.966 50.000 0.00 0.00 0.00 2.90
3862 5672 2.391879 GACGGTAATCTCGCATACACC 58.608 52.381 0.00 0.00 0.00 4.16
3863 5673 1.405461 CGGTAATCTCGCATACACCG 58.595 55.000 0.00 0.00 42.41 4.94
3864 5674 2.787601 GGTAATCTCGCATACACCGA 57.212 50.000 0.00 0.00 0.00 4.69
3865 5675 3.088194 GGTAATCTCGCATACACCGAA 57.912 47.619 0.00 0.00 33.92 4.30
3866 5676 3.650139 GGTAATCTCGCATACACCGAAT 58.350 45.455 0.00 0.00 33.92 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.895020 ATCTGGTTTGCCGTCCGCTA 61.895 55.000 0.00 0.00 38.78 4.26
1314 1707 4.999311 TCAGTGATGTCTGAATGTCCAAAG 59.001 41.667 0.00 0.00 40.82 2.77
1460 1853 1.541147 CGATCCATGTGCACAAAAGGT 59.459 47.619 25.72 11.74 0.00 3.50
1804 2998 3.181461 CGGAGGTTCTAGCTGAATCCAAT 60.181 47.826 0.00 0.00 36.47 3.16
1816 3010 0.818296 GAGCTGCTTCGGAGGTTCTA 59.182 55.000 2.53 0.00 0.00 2.10
1874 3068 5.019470 AGATCACACTCACTGAAGATACCA 58.981 41.667 0.00 0.00 0.00 3.25
1900 3094 4.286297 TCAAGGATAAACAGTGTCCAGG 57.714 45.455 0.00 0.00 34.42 4.45
2191 3428 6.146216 AGAACTCTAGCATCAAATACGATCG 58.854 40.000 14.88 14.88 0.00 3.69
2266 3999 1.215244 CAATGCGCATCACTCGATCT 58.785 50.000 25.53 0.62 0.00 2.75
2267 4000 0.383983 GCAATGCGCATCACTCGATC 60.384 55.000 25.53 3.10 41.79 3.69
2547 4338 2.180017 GCGGCTTGGCACATGAAG 59.820 61.111 0.00 0.00 39.30 3.02
3328 5138 1.745489 GGACGGCAAAGAAGCGGAT 60.745 57.895 0.00 0.00 38.12 4.18
3533 5343 2.434359 CAGCTTCGGACCGGGAAC 60.434 66.667 15.25 1.41 0.00 3.62
3536 5346 4.760047 CCACAGCTTCGGACCGGG 62.760 72.222 15.25 8.68 0.00 5.73
3537 5347 3.019003 ATCCACAGCTTCGGACCGG 62.019 63.158 15.25 0.00 33.05 5.28
3538 5348 1.811266 CATCCACAGCTTCGGACCG 60.811 63.158 7.84 7.84 33.05 4.79
3539 5349 0.460987 CTCATCCACAGCTTCGGACC 60.461 60.000 2.92 0.00 33.05 4.46
3540 5350 0.532573 TCTCATCCACAGCTTCGGAC 59.467 55.000 2.92 0.00 33.05 4.79
3541 5351 0.820226 CTCTCATCCACAGCTTCGGA 59.180 55.000 3.35 3.35 35.27 4.55
3542 5352 0.820226 TCTCTCATCCACAGCTTCGG 59.180 55.000 0.00 0.00 0.00 4.30
3543 5353 1.202394 CCTCTCTCATCCACAGCTTCG 60.202 57.143 0.00 0.00 0.00 3.79
3544 5354 1.830477 ACCTCTCTCATCCACAGCTTC 59.170 52.381 0.00 0.00 0.00 3.86
3545 5355 1.949799 ACCTCTCTCATCCACAGCTT 58.050 50.000 0.00 0.00 0.00 3.74
3546 5356 1.554160 CAACCTCTCTCATCCACAGCT 59.446 52.381 0.00 0.00 0.00 4.24
3547 5357 1.552337 TCAACCTCTCTCATCCACAGC 59.448 52.381 0.00 0.00 0.00 4.40
3548 5358 3.705579 AGATCAACCTCTCTCATCCACAG 59.294 47.826 0.00 0.00 0.00 3.66
3549 5359 3.703556 GAGATCAACCTCTCTCATCCACA 59.296 47.826 0.00 0.00 38.90 4.17
3550 5360 4.320608 GAGATCAACCTCTCTCATCCAC 57.679 50.000 0.00 0.00 38.90 4.02
3558 5368 6.045955 GTCCATTACAAGAGATCAACCTCTC 58.954 44.000 0.00 0.00 42.31 3.20
3559 5369 5.394663 CGTCCATTACAAGAGATCAACCTCT 60.395 44.000 0.00 0.00 44.84 3.69
3560 5370 4.806247 CGTCCATTACAAGAGATCAACCTC 59.194 45.833 0.00 0.00 0.00 3.85
3561 5371 4.383118 CCGTCCATTACAAGAGATCAACCT 60.383 45.833 0.00 0.00 0.00 3.50
3562 5372 3.871594 CCGTCCATTACAAGAGATCAACC 59.128 47.826 0.00 0.00 0.00 3.77
3563 5373 3.309954 GCCGTCCATTACAAGAGATCAAC 59.690 47.826 0.00 0.00 0.00 3.18
3564 5374 3.531538 GCCGTCCATTACAAGAGATCAA 58.468 45.455 0.00 0.00 0.00 2.57
3565 5375 2.481276 CGCCGTCCATTACAAGAGATCA 60.481 50.000 0.00 0.00 0.00 2.92
3566 5376 2.128035 CGCCGTCCATTACAAGAGATC 58.872 52.381 0.00 0.00 0.00 2.75
3567 5377 1.202533 CCGCCGTCCATTACAAGAGAT 60.203 52.381 0.00 0.00 0.00 2.75
3568 5378 0.174845 CCGCCGTCCATTACAAGAGA 59.825 55.000 0.00 0.00 0.00 3.10
3569 5379 1.429148 GCCGCCGTCCATTACAAGAG 61.429 60.000 0.00 0.00 0.00 2.85
3570 5380 1.448893 GCCGCCGTCCATTACAAGA 60.449 57.895 0.00 0.00 0.00 3.02
3571 5381 2.808958 CGCCGCCGTCCATTACAAG 61.809 63.158 0.00 0.00 0.00 3.16
3572 5382 2.816083 CGCCGCCGTCCATTACAA 60.816 61.111 0.00 0.00 0.00 2.41
3573 5383 4.071875 ACGCCGCCGTCCATTACA 62.072 61.111 0.00 0.00 46.39 2.41
3584 5394 4.944372 CTGATACCCCGACGCCGC 62.944 72.222 0.00 0.00 0.00 6.53
3585 5395 4.944372 GCTGATACCCCGACGCCG 62.944 72.222 0.00 0.00 0.00 6.46
3586 5396 3.501458 GAGCTGATACCCCGACGCC 62.501 68.421 0.00 0.00 0.00 5.68
3587 5397 2.027751 GAGCTGATACCCCGACGC 59.972 66.667 0.00 0.00 0.00 5.19
3588 5398 2.728817 GGAGCTGATACCCCGACG 59.271 66.667 0.00 0.00 0.00 5.12
3589 5399 2.728817 CGGAGCTGATACCCCGAC 59.271 66.667 3.28 0.00 44.29 4.79
3590 5400 2.520982 CCGGAGCTGATACCCCGA 60.521 66.667 10.61 0.00 44.29 5.14
3591 5401 4.301027 GCCGGAGCTGATACCCCG 62.301 72.222 5.05 0.00 41.47 5.73
3592 5402 2.520536 ATGCCGGAGCTGATACCCC 61.521 63.158 5.05 0.00 40.80 4.95
3593 5403 1.302033 CATGCCGGAGCTGATACCC 60.302 63.158 5.05 0.00 40.80 3.69
3594 5404 1.302033 CCATGCCGGAGCTGATACC 60.302 63.158 5.05 0.00 40.80 2.73
3595 5405 0.882042 CACCATGCCGGAGCTGATAC 60.882 60.000 5.05 0.00 40.80 2.24
3596 5406 1.447217 CACCATGCCGGAGCTGATA 59.553 57.895 5.05 0.00 40.80 2.15
3597 5407 2.191375 CACCATGCCGGAGCTGAT 59.809 61.111 5.05 0.00 40.80 2.90
3598 5408 4.100084 CCACCATGCCGGAGCTGA 62.100 66.667 5.05 0.00 40.80 4.26
3599 5409 4.100084 TCCACCATGCCGGAGCTG 62.100 66.667 5.05 0.00 40.80 4.24
3600 5410 3.790437 CTCCACCATGCCGGAGCT 61.790 66.667 5.05 0.00 42.30 4.09
3601 5411 4.864334 CCTCCACCATGCCGGAGC 62.864 72.222 18.69 0.00 46.37 4.70
3603 5413 3.083349 CTCCTCCACCATGCCGGA 61.083 66.667 5.05 1.78 38.63 5.14
3604 5414 4.181010 CCTCCTCCACCATGCCGG 62.181 72.222 0.00 0.00 42.50 6.13
3605 5415 3.083349 TCCTCCTCCACCATGCCG 61.083 66.667 0.00 0.00 0.00 5.69
3606 5416 2.592308 GTCCTCCTCCACCATGCC 59.408 66.667 0.00 0.00 0.00 4.40
3607 5417 2.187946 CGTCCTCCTCCACCATGC 59.812 66.667 0.00 0.00 0.00 4.06
3608 5418 2.903357 CCGTCCTCCTCCACCATG 59.097 66.667 0.00 0.00 0.00 3.66
3609 5419 3.083997 GCCGTCCTCCTCCACCAT 61.084 66.667 0.00 0.00 0.00 3.55
3616 5426 4.779733 ATCCACCGCCGTCCTCCT 62.780 66.667 0.00 0.00 0.00 3.69
3617 5427 4.530857 CATCCACCGCCGTCCTCC 62.531 72.222 0.00 0.00 0.00 4.30
3618 5428 4.530857 CCATCCACCGCCGTCCTC 62.531 72.222 0.00 0.00 0.00 3.71
3628 5438 4.796495 GTCCGCCACCCCATCCAC 62.796 72.222 0.00 0.00 0.00 4.02
3653 5463 4.716977 ACCCCACCCTCCTCCGTC 62.717 72.222 0.00 0.00 0.00 4.79
3656 5466 4.348495 TCCACCCCACCCTCCTCC 62.348 72.222 0.00 0.00 0.00 4.30
3657 5467 2.689034 CTCCACCCCACCCTCCTC 60.689 72.222 0.00 0.00 0.00 3.71
3658 5468 3.208592 TCTCCACCCCACCCTCCT 61.209 66.667 0.00 0.00 0.00 3.69
3659 5469 2.689034 CTCTCCACCCCACCCTCC 60.689 72.222 0.00 0.00 0.00 4.30
3660 5470 2.689034 CCTCTCCACCCCACCCTC 60.689 72.222 0.00 0.00 0.00 4.30
3661 5471 4.354943 CCCTCTCCACCCCACCCT 62.355 72.222 0.00 0.00 0.00 4.34
3662 5472 4.677151 ACCCTCTCCACCCCACCC 62.677 72.222 0.00 0.00 0.00 4.61
3663 5473 3.330720 CACCCTCTCCACCCCACC 61.331 72.222 0.00 0.00 0.00 4.61
3664 5474 1.716028 AAACACCCTCTCCACCCCAC 61.716 60.000 0.00 0.00 0.00 4.61
3665 5475 0.996762 AAAACACCCTCTCCACCCCA 60.997 55.000 0.00 0.00 0.00 4.96
3666 5476 0.187606 AAAAACACCCTCTCCACCCC 59.812 55.000 0.00 0.00 0.00 4.95
3667 5477 1.328279 CAAAAACACCCTCTCCACCC 58.672 55.000 0.00 0.00 0.00 4.61
3668 5478 0.673985 GCAAAAACACCCTCTCCACC 59.326 55.000 0.00 0.00 0.00 4.61
3669 5479 0.310854 CGCAAAAACACCCTCTCCAC 59.689 55.000 0.00 0.00 0.00 4.02
3670 5480 1.452145 GCGCAAAAACACCCTCTCCA 61.452 55.000 0.30 0.00 0.00 3.86
3671 5481 1.285950 GCGCAAAAACACCCTCTCC 59.714 57.895 0.30 0.00 0.00 3.71
3672 5482 1.285950 GGCGCAAAAACACCCTCTC 59.714 57.895 10.83 0.00 0.00 3.20
3673 5483 2.200337 GGGCGCAAAAACACCCTCT 61.200 57.895 10.83 0.00 39.42 3.69
3674 5484 2.338620 GGGCGCAAAAACACCCTC 59.661 61.111 10.83 0.00 39.42 4.30
3675 5485 2.443016 TGGGCGCAAAAACACCCT 60.443 55.556 10.83 0.00 43.25 4.34
3676 5486 2.279851 GTGGGCGCAAAAACACCC 60.280 61.111 10.83 0.00 43.14 4.61
3677 5487 2.656973 CGTGGGCGCAAAAACACC 60.657 61.111 10.83 0.00 0.00 4.16
3678 5488 2.656973 CCGTGGGCGCAAAAACAC 60.657 61.111 10.83 8.95 36.67 3.32
3679 5489 2.829003 TCCGTGGGCGCAAAAACA 60.829 55.556 10.83 0.00 36.67 2.83
3680 5490 1.508808 TACTCCGTGGGCGCAAAAAC 61.509 55.000 10.83 0.00 36.67 2.43
3681 5491 1.227883 TACTCCGTGGGCGCAAAAA 60.228 52.632 10.83 0.00 36.67 1.94
3682 5492 1.962306 GTACTCCGTGGGCGCAAAA 60.962 57.895 10.83 0.00 36.67 2.44
3683 5493 2.357760 GTACTCCGTGGGCGCAAA 60.358 61.111 10.83 0.00 36.67 3.68
3684 5494 4.728102 CGTACTCCGTGGGCGCAA 62.728 66.667 10.83 0.00 36.67 4.85
3686 5496 3.711541 ATTCGTACTCCGTGGGCGC 62.712 63.158 0.00 0.00 37.94 6.53
3687 5497 1.876714 CATTCGTACTCCGTGGGCG 60.877 63.158 0.00 0.00 37.94 6.13
3688 5498 1.520787 CCATTCGTACTCCGTGGGC 60.521 63.158 0.00 0.00 37.94 5.36
3689 5499 1.143183 CCCATTCGTACTCCGTGGG 59.857 63.158 7.73 7.73 43.84 4.61
3690 5500 1.143183 CCCCATTCGTACTCCGTGG 59.857 63.158 0.00 0.00 37.94 4.94
3691 5501 0.533491 TTCCCCATTCGTACTCCGTG 59.467 55.000 0.00 0.00 37.94 4.94
3692 5502 1.269012 TTTCCCCATTCGTACTCCGT 58.731 50.000 0.00 0.00 37.94 4.69
3693 5503 2.277084 CTTTTCCCCATTCGTACTCCG 58.723 52.381 0.00 0.00 38.13 4.63
3694 5504 2.640184 CCTTTTCCCCATTCGTACTCC 58.360 52.381 0.00 0.00 0.00 3.85
3695 5505 2.237893 TCCCTTTTCCCCATTCGTACTC 59.762 50.000 0.00 0.00 0.00 2.59
3696 5506 2.238898 CTCCCTTTTCCCCATTCGTACT 59.761 50.000 0.00 0.00 0.00 2.73
3697 5507 2.640184 CTCCCTTTTCCCCATTCGTAC 58.360 52.381 0.00 0.00 0.00 3.67
3698 5508 1.562475 CCTCCCTTTTCCCCATTCGTA 59.438 52.381 0.00 0.00 0.00 3.43
3699 5509 0.331616 CCTCCCTTTTCCCCATTCGT 59.668 55.000 0.00 0.00 0.00 3.85
3700 5510 0.331616 ACCTCCCTTTTCCCCATTCG 59.668 55.000 0.00 0.00 0.00 3.34
3701 5511 2.850568 TCTACCTCCCTTTTCCCCATTC 59.149 50.000 0.00 0.00 0.00 2.67
3702 5512 2.853077 CTCTACCTCCCTTTTCCCCATT 59.147 50.000 0.00 0.00 0.00 3.16
3703 5513 2.047296 TCTCTACCTCCCTTTTCCCCAT 59.953 50.000 0.00 0.00 0.00 4.00
3704 5514 1.439543 TCTCTACCTCCCTTTTCCCCA 59.560 52.381 0.00 0.00 0.00 4.96
3705 5515 2.120312 CTCTCTACCTCCCTTTTCCCC 58.880 57.143 0.00 0.00 0.00 4.81
3706 5516 2.120312 CCTCTCTACCTCCCTTTTCCC 58.880 57.143 0.00 0.00 0.00 3.97
3707 5517 3.117552 TCCTCTCTACCTCCCTTTTCC 57.882 52.381 0.00 0.00 0.00 3.13
3708 5518 3.452990 CCTTCCTCTCTACCTCCCTTTTC 59.547 52.174 0.00 0.00 0.00 2.29
3709 5519 3.455849 CCTTCCTCTCTACCTCCCTTTT 58.544 50.000 0.00 0.00 0.00 2.27
3710 5520 2.293251 CCCTTCCTCTCTACCTCCCTTT 60.293 54.545 0.00 0.00 0.00 3.11
3711 5521 1.292546 CCCTTCCTCTCTACCTCCCTT 59.707 57.143 0.00 0.00 0.00 3.95
3712 5522 0.938192 CCCTTCCTCTCTACCTCCCT 59.062 60.000 0.00 0.00 0.00 4.20
3713 5523 0.105401 CCCCTTCCTCTCTACCTCCC 60.105 65.000 0.00 0.00 0.00 4.30
3714 5524 0.105401 CCCCCTTCCTCTCTACCTCC 60.105 65.000 0.00 0.00 0.00 4.30
3715 5525 3.543112 CCCCCTTCCTCTCTACCTC 57.457 63.158 0.00 0.00 0.00 3.85
3730 5540 1.133482 CCCTGAATACATGGTTCCCCC 60.133 57.143 0.00 0.00 0.00 5.40
3731 5541 1.754201 GCCCTGAATACATGGTTCCCC 60.754 57.143 0.00 0.00 34.90 4.81
3732 5542 1.692411 GCCCTGAATACATGGTTCCC 58.308 55.000 0.00 0.00 34.90 3.97
3733 5543 1.308998 CGCCCTGAATACATGGTTCC 58.691 55.000 0.00 0.00 34.90 3.62
3734 5544 0.663153 GCGCCCTGAATACATGGTTC 59.337 55.000 0.00 1.79 34.90 3.62
3735 5545 1.095228 CGCGCCCTGAATACATGGTT 61.095 55.000 0.00 0.00 34.90 3.67
3736 5546 1.523711 CGCGCCCTGAATACATGGT 60.524 57.895 0.00 0.00 34.90 3.55
3737 5547 2.896801 GCGCGCCCTGAATACATGG 61.897 63.158 23.24 0.00 35.41 3.66
3738 5548 1.439353 AAGCGCGCCCTGAATACATG 61.439 55.000 30.33 0.00 0.00 3.21
3739 5549 1.153168 AAGCGCGCCCTGAATACAT 60.153 52.632 30.33 0.79 0.00 2.29
3740 5550 2.106074 CAAGCGCGCCCTGAATACA 61.106 57.895 30.33 0.00 0.00 2.29
3741 5551 2.036764 GACAAGCGCGCCCTGAATAC 62.037 60.000 30.71 17.14 0.00 1.89
3742 5552 1.813753 GACAAGCGCGCCCTGAATA 60.814 57.895 30.71 0.00 0.00 1.75
3743 5553 3.127533 GACAAGCGCGCCCTGAAT 61.128 61.111 30.71 14.21 0.00 2.57
3744 5554 4.314440 AGACAAGCGCGCCCTGAA 62.314 61.111 30.71 0.00 0.00 3.02
3745 5555 4.742201 GAGACAAGCGCGCCCTGA 62.742 66.667 30.71 0.00 0.00 3.86
3747 5557 3.825160 TTTGAGACAAGCGCGCCCT 62.825 57.895 30.33 19.67 0.00 5.19
3748 5558 2.690778 ATTTGAGACAAGCGCGCCC 61.691 57.895 30.33 14.86 0.00 6.13
3749 5559 1.512734 CATTTGAGACAAGCGCGCC 60.513 57.895 30.33 12.88 0.00 6.53
3750 5560 2.148365 GCATTTGAGACAAGCGCGC 61.148 57.895 26.66 26.66 0.00 6.86
3751 5561 1.860423 CGCATTTGAGACAAGCGCG 60.860 57.895 0.00 0.00 41.95 6.86
3752 5562 4.047030 CGCATTTGAGACAAGCGC 57.953 55.556 0.00 0.00 41.95 5.92
3754 5564 1.442769 TCCTCGCATTTGAGACAAGC 58.557 50.000 0.00 0.00 38.28 4.01
3755 5565 4.691860 ATTTCCTCGCATTTGAGACAAG 57.308 40.909 0.00 0.00 38.28 3.16
3756 5566 5.452078 AAATTTCCTCGCATTTGAGACAA 57.548 34.783 0.00 0.00 38.28 3.18
3757 5567 5.471797 TGTAAATTTCCTCGCATTTGAGACA 59.528 36.000 0.00 0.00 38.28 3.41
3758 5568 5.938322 TGTAAATTTCCTCGCATTTGAGAC 58.062 37.500 0.00 0.00 38.28 3.36
3759 5569 6.567687 TTGTAAATTTCCTCGCATTTGAGA 57.432 33.333 0.00 0.00 38.28 3.27
3760 5570 6.863126 AGTTTGTAAATTTCCTCGCATTTGAG 59.137 34.615 0.00 0.00 35.70 3.02
3761 5571 6.744112 AGTTTGTAAATTTCCTCGCATTTGA 58.256 32.000 0.00 0.00 0.00 2.69
3762 5572 7.406799 AAGTTTGTAAATTTCCTCGCATTTG 57.593 32.000 0.00 0.00 0.00 2.32
3763 5573 7.328493 GCTAAGTTTGTAAATTTCCTCGCATTT 59.672 33.333 0.00 0.00 0.00 2.32
3764 5574 6.806739 GCTAAGTTTGTAAATTTCCTCGCATT 59.193 34.615 0.00 0.00 0.00 3.56
3765 5575 6.322491 GCTAAGTTTGTAAATTTCCTCGCAT 58.678 36.000 0.00 0.00 0.00 4.73
3766 5576 5.335348 GGCTAAGTTTGTAAATTTCCTCGCA 60.335 40.000 0.00 0.00 0.00 5.10
3767 5577 5.093457 GGCTAAGTTTGTAAATTTCCTCGC 58.907 41.667 0.00 0.00 0.00 5.03
3768 5578 5.392703 GGGGCTAAGTTTGTAAATTTCCTCG 60.393 44.000 0.00 0.00 0.00 4.63
3769 5579 5.105473 GGGGGCTAAGTTTGTAAATTTCCTC 60.105 44.000 0.00 0.00 0.00 3.71
3770 5580 4.775780 GGGGGCTAAGTTTGTAAATTTCCT 59.224 41.667 0.00 0.00 0.00 3.36
3771 5581 4.381185 CGGGGGCTAAGTTTGTAAATTTCC 60.381 45.833 0.00 0.00 0.00 3.13
3772 5582 4.219070 ACGGGGGCTAAGTTTGTAAATTTC 59.781 41.667 0.00 0.00 0.00 2.17
3773 5583 4.154176 ACGGGGGCTAAGTTTGTAAATTT 58.846 39.130 0.00 0.00 0.00 1.82
3774 5584 3.770046 ACGGGGGCTAAGTTTGTAAATT 58.230 40.909 0.00 0.00 0.00 1.82
3775 5585 3.444792 ACGGGGGCTAAGTTTGTAAAT 57.555 42.857 0.00 0.00 0.00 1.40
3776 5586 2.955342 ACGGGGGCTAAGTTTGTAAA 57.045 45.000 0.00 0.00 0.00 2.01
3777 5587 2.955342 AACGGGGGCTAAGTTTGTAA 57.045 45.000 0.00 0.00 0.00 2.41
3778 5588 2.106166 TGAAACGGGGGCTAAGTTTGTA 59.894 45.455 8.82 0.00 38.09 2.41
3779 5589 1.133730 TGAAACGGGGGCTAAGTTTGT 60.134 47.619 8.82 0.00 38.09 2.83
3780 5590 1.611519 TGAAACGGGGGCTAAGTTTG 58.388 50.000 8.82 0.00 38.09 2.93
3781 5591 2.368311 TTGAAACGGGGGCTAAGTTT 57.632 45.000 4.91 4.91 40.32 2.66
3782 5592 2.368311 TTTGAAACGGGGGCTAAGTT 57.632 45.000 0.00 0.00 0.00 2.66
3783 5593 2.597578 ATTTGAAACGGGGGCTAAGT 57.402 45.000 0.00 0.00 0.00 2.24
3784 5594 3.509967 AGAAATTTGAAACGGGGGCTAAG 59.490 43.478 0.00 0.00 0.00 2.18
3785 5595 3.502356 AGAAATTTGAAACGGGGGCTAA 58.498 40.909 0.00 0.00 0.00 3.09
3786 5596 3.163616 AGAAATTTGAAACGGGGGCTA 57.836 42.857 0.00 0.00 0.00 3.93
3787 5597 2.009681 AGAAATTTGAAACGGGGGCT 57.990 45.000 0.00 0.00 0.00 5.19
3788 5598 2.823747 AGTAGAAATTTGAAACGGGGGC 59.176 45.455 0.00 0.00 0.00 5.80
3789 5599 5.005094 TGTAGTAGAAATTTGAAACGGGGG 58.995 41.667 0.00 0.00 0.00 5.40
3790 5600 6.373216 TGATGTAGTAGAAATTTGAAACGGGG 59.627 38.462 0.00 0.00 0.00 5.73
3791 5601 7.094975 TGTGATGTAGTAGAAATTTGAAACGGG 60.095 37.037 0.00 0.00 0.00 5.28
3792 5602 7.802738 TGTGATGTAGTAGAAATTTGAAACGG 58.197 34.615 0.00 0.00 0.00 4.44
3793 5603 9.103048 GTTGTGATGTAGTAGAAATTTGAAACG 57.897 33.333 0.00 0.00 0.00 3.60
3794 5604 9.944663 TGTTGTGATGTAGTAGAAATTTGAAAC 57.055 29.630 0.00 0.00 0.00 2.78
3796 5606 9.944663 GTTGTTGTGATGTAGTAGAAATTTGAA 57.055 29.630 0.00 0.00 0.00 2.69
3797 5607 9.114952 TGTTGTTGTGATGTAGTAGAAATTTGA 57.885 29.630 0.00 0.00 0.00 2.69
3798 5608 9.897744 ATGTTGTTGTGATGTAGTAGAAATTTG 57.102 29.630 0.00 0.00 0.00 2.32
3802 5612 9.772973 ACTAATGTTGTTGTGATGTAGTAGAAA 57.227 29.630 0.00 0.00 0.00 2.52
3803 5613 9.419297 GACTAATGTTGTTGTGATGTAGTAGAA 57.581 33.333 0.00 0.00 0.00 2.10
3804 5614 8.581578 TGACTAATGTTGTTGTGATGTAGTAGA 58.418 33.333 0.00 0.00 0.00 2.59
3805 5615 8.757164 TGACTAATGTTGTTGTGATGTAGTAG 57.243 34.615 0.00 0.00 0.00 2.57
3806 5616 8.364894 ACTGACTAATGTTGTTGTGATGTAGTA 58.635 33.333 0.00 0.00 0.00 1.82
3807 5617 7.217200 ACTGACTAATGTTGTTGTGATGTAGT 58.783 34.615 0.00 0.00 0.00 2.73
3808 5618 7.658179 ACTGACTAATGTTGTTGTGATGTAG 57.342 36.000 0.00 0.00 0.00 2.74
3809 5619 7.041440 CCAACTGACTAATGTTGTTGTGATGTA 60.041 37.037 0.00 0.00 41.16 2.29
3810 5620 6.238731 CCAACTGACTAATGTTGTTGTGATGT 60.239 38.462 0.00 0.00 41.16 3.06
3811 5621 6.144854 CCAACTGACTAATGTTGTTGTGATG 58.855 40.000 0.00 0.00 41.16 3.07
3812 5622 5.241506 CCCAACTGACTAATGTTGTTGTGAT 59.758 40.000 0.00 0.00 41.16 3.06
3813 5623 4.578516 CCCAACTGACTAATGTTGTTGTGA 59.421 41.667 0.00 0.00 41.16 3.58
3814 5624 4.261572 CCCCAACTGACTAATGTTGTTGTG 60.262 45.833 0.00 0.00 41.16 3.33
3815 5625 3.888930 CCCCAACTGACTAATGTTGTTGT 59.111 43.478 0.00 0.00 41.16 3.32
3816 5626 4.141287 TCCCCAACTGACTAATGTTGTTG 58.859 43.478 0.00 0.00 41.16 3.33
3817 5627 4.447138 TCCCCAACTGACTAATGTTGTT 57.553 40.909 0.00 0.00 41.16 2.83
3818 5628 4.657814 ATCCCCAACTGACTAATGTTGT 57.342 40.909 0.00 0.00 41.16 3.32
3819 5629 5.104527 TCCTATCCCCAACTGACTAATGTTG 60.105 44.000 0.00 0.00 42.05 3.33
3820 5630 5.036916 TCCTATCCCCAACTGACTAATGTT 58.963 41.667 0.00 0.00 0.00 2.71
3821 5631 4.409247 GTCCTATCCCCAACTGACTAATGT 59.591 45.833 0.00 0.00 0.00 2.71
3822 5632 4.501571 CGTCCTATCCCCAACTGACTAATG 60.502 50.000 0.00 0.00 0.00 1.90
3823 5633 3.641906 CGTCCTATCCCCAACTGACTAAT 59.358 47.826 0.00 0.00 0.00 1.73
3824 5634 3.028850 CGTCCTATCCCCAACTGACTAA 58.971 50.000 0.00 0.00 0.00 2.24
3825 5635 2.662866 CGTCCTATCCCCAACTGACTA 58.337 52.381 0.00 0.00 0.00 2.59
3826 5636 1.486211 CGTCCTATCCCCAACTGACT 58.514 55.000 0.00 0.00 0.00 3.41
3827 5637 0.464452 CCGTCCTATCCCCAACTGAC 59.536 60.000 0.00 0.00 0.00 3.51
3828 5638 0.042131 ACCGTCCTATCCCCAACTGA 59.958 55.000 0.00 0.00 0.00 3.41
3829 5639 1.784358 TACCGTCCTATCCCCAACTG 58.216 55.000 0.00 0.00 0.00 3.16
3830 5640 2.555732 TTACCGTCCTATCCCCAACT 57.444 50.000 0.00 0.00 0.00 3.16
3831 5641 2.970640 AGATTACCGTCCTATCCCCAAC 59.029 50.000 0.00 0.00 0.00 3.77
3832 5642 3.236896 GAGATTACCGTCCTATCCCCAA 58.763 50.000 0.00 0.00 0.00 4.12
3833 5643 2.816712 CGAGATTACCGTCCTATCCCCA 60.817 54.545 0.00 0.00 0.00 4.96
3834 5644 1.817447 CGAGATTACCGTCCTATCCCC 59.183 57.143 0.00 0.00 0.00 4.81
3835 5645 1.201880 GCGAGATTACCGTCCTATCCC 59.798 57.143 0.00 0.00 0.00 3.85
3836 5646 1.884579 TGCGAGATTACCGTCCTATCC 59.115 52.381 0.00 0.00 0.00 2.59
3837 5647 3.851976 ATGCGAGATTACCGTCCTATC 57.148 47.619 0.00 0.00 0.00 2.08
3838 5648 4.077108 TGTATGCGAGATTACCGTCCTAT 58.923 43.478 0.00 0.00 0.00 2.57
3839 5649 3.251729 GTGTATGCGAGATTACCGTCCTA 59.748 47.826 0.00 0.00 0.00 2.94
3840 5650 2.034305 GTGTATGCGAGATTACCGTCCT 59.966 50.000 0.00 0.00 0.00 3.85
3841 5651 2.391879 GTGTATGCGAGATTACCGTCC 58.608 52.381 0.00 0.00 0.00 4.79
3842 5652 2.391879 GGTGTATGCGAGATTACCGTC 58.608 52.381 0.00 0.00 0.00 4.79
3843 5653 1.268896 CGGTGTATGCGAGATTACCGT 60.269 52.381 11.26 0.00 44.25 4.83
3844 5654 1.405461 CGGTGTATGCGAGATTACCG 58.595 55.000 0.00 0.00 43.93 4.02
3845 5655 2.787601 TCGGTGTATGCGAGATTACC 57.212 50.000 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.