Multiple sequence alignment - TraesCS2D01G172900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G172900 chr2D 100.000 3029 0 0 1 3029 116778155 116775127 0.000000e+00 5594.0
1 TraesCS2D01G172900 chr2D 87.030 1357 114 32 778 2079 116620830 116619481 0.000000e+00 1474.0
2 TraesCS2D01G172900 chr2D 84.098 981 129 20 990 1953 116800966 116799996 0.000000e+00 922.0
3 TraesCS2D01G172900 chr2D 85.545 761 66 14 770 1506 116645894 116645154 0.000000e+00 756.0
4 TraesCS2D01G172900 chr2D 84.157 587 75 13 1288 1865 116597143 116596566 1.230000e-153 553.0
5 TraesCS2D01G172900 chr2D 86.139 202 23 4 1080 1277 116620375 116620175 2.370000e-51 213.0
6 TraesCS2D01G172900 chr2D 82.500 200 25 5 1078 1277 116776960 116776771 1.870000e-37 167.0
7 TraesCS2D01G172900 chr2D 93.827 81 2 1 437 514 134800352 134800272 5.300000e-23 119.0
8 TraesCS2D01G172900 chr2D 85.870 92 13 0 1083 1174 116620252 116620161 6.910000e-17 99.0
9 TraesCS2D01G172900 chr2D 92.958 71 0 3 598 668 116646047 116645982 6.910000e-17 99.0
10 TraesCS2D01G172900 chr2A 92.141 1107 37 14 1300 2381 118222054 118220973 0.000000e+00 1517.0
11 TraesCS2D01G172900 chr2A 86.505 1282 117 30 778 2020 118214485 118213221 0.000000e+00 1358.0
12 TraesCS2D01G172900 chr2A 89.601 702 33 14 669 1340 118222780 118222089 0.000000e+00 856.0
13 TraesCS2D01G172900 chr2A 82.595 971 128 23 990 1924 118228809 118227844 0.000000e+00 819.0
14 TraesCS2D01G172900 chr2A 94.627 335 17 1 2440 2774 118220625 118220292 4.480000e-143 518.0
15 TraesCS2D01G172900 chr2A 80.064 311 20 17 1 271 118223365 118223057 3.080000e-45 193.0
16 TraesCS2D01G172900 chr2A 96.154 78 3 0 437 514 142717700 142717623 8.810000e-26 128.0
17 TraesCS2D01G172900 chrUn 93.682 918 54 2 873 1789 460199804 460200718 0.000000e+00 1371.0
18 TraesCS2D01G172900 chrUn 82.413 1086 146 31 873 1924 17426119 17427193 0.000000e+00 905.0
19 TraesCS2D01G172900 chrUn 93.003 343 11 5 1 330 17453450 17453108 3.510000e-134 488.0
20 TraesCS2D01G172900 chrUn 93.252 163 9 2 648 810 17453043 17452883 3.900000e-59 239.0
21 TraesCS2D01G172900 chrUn 82.710 214 25 6 1078 1289 460200125 460200328 2.400000e-41 180.0
22 TraesCS2D01G172900 chrUn 81.967 122 9 6 749 857 17425956 17426077 1.160000e-14 91.6
23 TraesCS2D01G172900 chr2B 83.448 580 84 12 1285 1858 166813458 166814031 2.070000e-146 529.0
24 TraesCS2D01G172900 chr2B 80.593 675 109 16 996 1656 166898630 166897964 4.510000e-138 501.0
25 TraesCS2D01G172900 chr2B 92.420 343 13 5 1 330 166879234 166878892 7.600000e-131 477.0
26 TraesCS2D01G172900 chr2B 91.941 273 22 0 1652 1924 166892773 166892501 1.700000e-102 383.0
27 TraesCS2D01G172900 chr2B 80.880 523 66 17 778 1278 166861205 166860695 6.130000e-102 381.0
28 TraesCS2D01G172900 chr2B 93.252 163 9 2 648 810 166878827 166878667 3.900000e-59 239.0
29 TraesCS2D01G172900 chr2B 95.000 100 5 0 158 257 166877554 166877455 1.120000e-34 158.0
30 TraesCS2D01G172900 chr2B 94.872 78 4 0 437 514 191751999 191751922 4.100000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G172900 chr2D 116775127 116778155 3028 True 2880.500000 5594 91.250000 1 3029 2 chr2D.!!$R6 3028
1 TraesCS2D01G172900 chr2D 116799996 116800966 970 True 922.000000 922 84.098000 990 1953 1 chr2D.!!$R2 963
2 TraesCS2D01G172900 chr2D 116619481 116620830 1349 True 595.333333 1474 86.346333 778 2079 3 chr2D.!!$R4 1301
3 TraesCS2D01G172900 chr2D 116596566 116597143 577 True 553.000000 553 84.157000 1288 1865 1 chr2D.!!$R1 577
4 TraesCS2D01G172900 chr2D 116645154 116646047 893 True 427.500000 756 89.251500 598 1506 2 chr2D.!!$R5 908
5 TraesCS2D01G172900 chr2A 118213221 118214485 1264 True 1358.000000 1358 86.505000 778 2020 1 chr2A.!!$R1 1242
6 TraesCS2D01G172900 chr2A 118227844 118228809 965 True 819.000000 819 82.595000 990 1924 1 chr2A.!!$R2 934
7 TraesCS2D01G172900 chr2A 118220292 118223365 3073 True 771.000000 1517 89.108250 1 2774 4 chr2A.!!$R4 2773
8 TraesCS2D01G172900 chrUn 460199804 460200718 914 False 775.500000 1371 88.196000 873 1789 2 chrUn.!!$F2 916
9 TraesCS2D01G172900 chrUn 17425956 17427193 1237 False 498.300000 905 82.190000 749 1924 2 chrUn.!!$F1 1175
10 TraesCS2D01G172900 chrUn 17452883 17453450 567 True 363.500000 488 93.127500 1 810 2 chrUn.!!$R1 809
11 TraesCS2D01G172900 chr2B 166813458 166814031 573 False 529.000000 529 83.448000 1285 1858 1 chr2B.!!$F1 573
12 TraesCS2D01G172900 chr2B 166897964 166898630 666 True 501.000000 501 80.593000 996 1656 1 chr2B.!!$R3 660
13 TraesCS2D01G172900 chr2B 166860695 166861205 510 True 381.000000 381 80.880000 778 1278 1 chr2B.!!$R1 500
14 TraesCS2D01G172900 chr2B 166877455 166879234 1779 True 291.333333 477 93.557333 1 810 3 chr2B.!!$R5 809

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
328 382 0.030638 GCCGCGTTGCATCCAAATAT 59.969 50.0 4.92 0.0 31.68 1.28 F
348 402 0.179067 TTTCAGTCGCCTTCGGTTGT 60.179 50.0 0.00 0.0 36.13 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1924 2246 0.464373 ACGGCCATGGCTATCACTTG 60.464 55.0 34.70 16.49 41.6 3.16 R
2338 2685 0.245539 TTTGGATCCGTCAGACCGTC 59.754 55.0 7.39 0.00 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 59 2.662596 GGGCATCGGTGTCACAGA 59.337 61.111 1.17 8.31 0.00 3.41
106 112 2.625314 GAGCCAAGCAAGGAAAGAACTT 59.375 45.455 0.00 0.00 0.00 2.66
116 128 1.678123 GGAAAGAACTTAGCCCGGGAC 60.678 57.143 29.31 16.50 0.00 4.46
117 129 1.002773 GAAAGAACTTAGCCCGGGACA 59.997 52.381 29.31 7.73 0.00 4.02
151 168 2.894879 GCGCGGTGGCATGTGATA 60.895 61.111 8.83 0.00 39.92 2.15
231 279 1.144057 CCATGTACCTGCTCCCGTC 59.856 63.158 0.00 0.00 0.00 4.79
328 382 0.030638 GCCGCGTTGCATCCAAATAT 59.969 50.000 4.92 0.00 31.68 1.28
329 383 1.535860 GCCGCGTTGCATCCAAATATT 60.536 47.619 4.92 0.00 31.68 1.28
330 384 2.808244 CCGCGTTGCATCCAAATATTT 58.192 42.857 4.92 0.00 31.68 1.40
331 385 3.186119 CCGCGTTGCATCCAAATATTTT 58.814 40.909 4.92 0.00 31.68 1.82
332 386 3.242712 CCGCGTTGCATCCAAATATTTTC 59.757 43.478 4.92 0.00 31.68 2.29
333 387 3.856521 CGCGTTGCATCCAAATATTTTCA 59.143 39.130 0.00 0.00 31.68 2.69
334 388 4.027458 CGCGTTGCATCCAAATATTTTCAG 60.027 41.667 0.00 0.00 31.68 3.02
335 389 4.864247 GCGTTGCATCCAAATATTTTCAGT 59.136 37.500 0.00 0.00 31.68 3.41
336 390 5.004726 GCGTTGCATCCAAATATTTTCAGTC 59.995 40.000 0.00 0.00 31.68 3.51
337 391 5.227805 CGTTGCATCCAAATATTTTCAGTCG 59.772 40.000 0.00 0.00 31.68 4.18
338 392 4.671377 TGCATCCAAATATTTTCAGTCGC 58.329 39.130 0.00 0.00 0.00 5.19
339 393 4.044426 GCATCCAAATATTTTCAGTCGCC 58.956 43.478 0.00 0.00 0.00 5.54
340 394 4.202050 GCATCCAAATATTTTCAGTCGCCT 60.202 41.667 0.00 0.00 0.00 5.52
341 395 5.679638 GCATCCAAATATTTTCAGTCGCCTT 60.680 40.000 0.00 0.00 0.00 4.35
342 396 5.560966 TCCAAATATTTTCAGTCGCCTTC 57.439 39.130 0.00 0.00 0.00 3.46
343 397 4.094294 TCCAAATATTTTCAGTCGCCTTCG 59.906 41.667 0.00 0.00 0.00 3.79
344 398 4.342772 CAAATATTTTCAGTCGCCTTCGG 58.657 43.478 0.00 0.00 36.13 4.30
345 399 2.754946 TATTTTCAGTCGCCTTCGGT 57.245 45.000 0.00 0.00 36.13 4.69
346 400 1.892209 ATTTTCAGTCGCCTTCGGTT 58.108 45.000 0.00 0.00 36.13 4.44
347 401 0.941542 TTTTCAGTCGCCTTCGGTTG 59.058 50.000 0.00 0.00 36.13 3.77
348 402 0.179067 TTTCAGTCGCCTTCGGTTGT 60.179 50.000 0.00 0.00 36.13 3.32
349 403 0.179067 TTCAGTCGCCTTCGGTTGTT 60.179 50.000 0.00 0.00 36.13 2.83
350 404 0.878523 TCAGTCGCCTTCGGTTGTTG 60.879 55.000 0.00 0.00 36.13 3.33
351 405 2.251371 GTCGCCTTCGGTTGTTGC 59.749 61.111 0.00 0.00 36.13 4.17
352 406 2.110213 TCGCCTTCGGTTGTTGCT 59.890 55.556 0.00 0.00 36.13 3.91
353 407 0.947180 GTCGCCTTCGGTTGTTGCTA 60.947 55.000 0.00 0.00 36.13 3.49
354 408 0.947180 TCGCCTTCGGTTGTTGCTAC 60.947 55.000 0.00 0.00 36.13 3.58
355 409 1.873863 GCCTTCGGTTGTTGCTACC 59.126 57.895 0.00 0.00 0.00 3.18
356 410 0.887387 GCCTTCGGTTGTTGCTACCA 60.887 55.000 0.00 0.00 35.31 3.25
357 411 1.821216 CCTTCGGTTGTTGCTACCAT 58.179 50.000 0.00 0.00 35.31 3.55
358 412 1.468520 CCTTCGGTTGTTGCTACCATG 59.531 52.381 0.00 0.00 35.31 3.66
359 413 0.878416 TTCGGTTGTTGCTACCATGC 59.122 50.000 0.00 0.00 35.31 4.06
360 414 0.250510 TCGGTTGTTGCTACCATGCA 60.251 50.000 0.00 0.00 41.65 3.96
361 415 0.810648 CGGTTGTTGCTACCATGCAT 59.189 50.000 0.00 0.00 42.96 3.96
362 416 1.467883 CGGTTGTTGCTACCATGCATG 60.468 52.381 20.19 20.19 42.96 4.06
375 429 2.927028 CATGCATGGATGAGGTTCTCA 58.073 47.619 21.61 0.00 44.99 3.27
381 435 0.659957 GGATGAGGTTCTCAATGCGC 59.340 55.000 0.00 0.00 44.04 6.09
445 504 4.641784 ATGCATGCATGGTCACGA 57.358 50.000 31.74 1.06 35.03 4.35
446 505 3.105187 ATGCATGCATGGTCACGAT 57.895 47.368 31.74 5.52 35.03 3.73
447 506 2.259266 ATGCATGCATGGTCACGATA 57.741 45.000 31.74 0.00 35.03 2.92
448 507 1.585297 TGCATGCATGGTCACGATAG 58.415 50.000 27.34 0.00 46.19 2.08
449 508 1.138661 TGCATGCATGGTCACGATAGA 59.861 47.619 27.34 0.00 41.38 1.98
450 509 1.797046 GCATGCATGGTCACGATAGAG 59.203 52.381 27.34 0.00 41.38 2.43
451 510 2.804572 GCATGCATGGTCACGATAGAGT 60.805 50.000 27.34 0.00 41.38 3.24
452 511 3.552890 GCATGCATGGTCACGATAGAGTA 60.553 47.826 27.34 0.00 41.38 2.59
453 512 4.620982 CATGCATGGTCACGATAGAGTAA 58.379 43.478 19.40 0.00 41.38 2.24
454 513 4.729227 TGCATGGTCACGATAGAGTAAA 57.271 40.909 0.00 0.00 41.38 2.01
455 514 5.276461 TGCATGGTCACGATAGAGTAAAT 57.724 39.130 0.00 0.00 41.38 1.40
456 515 5.049828 TGCATGGTCACGATAGAGTAAATG 58.950 41.667 0.00 0.00 41.38 2.32
457 516 5.050490 GCATGGTCACGATAGAGTAAATGT 58.950 41.667 0.00 0.00 41.38 2.71
458 517 5.050769 GCATGGTCACGATAGAGTAAATGTG 60.051 44.000 0.00 0.00 41.38 3.21
459 518 5.907866 TGGTCACGATAGAGTAAATGTGA 57.092 39.130 0.00 0.00 41.38 3.58
460 519 5.891451 TGGTCACGATAGAGTAAATGTGAG 58.109 41.667 0.00 0.00 37.06 3.51
461 520 5.163550 TGGTCACGATAGAGTAAATGTGAGG 60.164 44.000 0.00 0.00 37.06 3.86
462 521 4.740695 GTCACGATAGAGTAAATGTGAGGC 59.259 45.833 0.00 0.00 37.06 4.70
463 522 4.401202 TCACGATAGAGTAAATGTGAGGCA 59.599 41.667 0.00 0.00 41.38 4.75
464 523 5.069119 TCACGATAGAGTAAATGTGAGGCAT 59.931 40.000 0.00 0.00 38.76 4.40
465 524 5.176406 CACGATAGAGTAAATGTGAGGCATG 59.824 44.000 0.00 0.00 37.64 4.06
466 525 5.163405 ACGATAGAGTAAATGTGAGGCATGT 60.163 40.000 0.00 0.00 37.64 3.21
467 526 5.755375 CGATAGAGTAAATGTGAGGCATGTT 59.245 40.000 0.00 0.00 36.46 2.71
468 527 6.923508 CGATAGAGTAAATGTGAGGCATGTTA 59.076 38.462 0.00 0.00 36.46 2.41
469 528 7.115520 CGATAGAGTAAATGTGAGGCATGTTAG 59.884 40.741 0.00 0.00 36.46 2.34
470 529 4.878397 AGAGTAAATGTGAGGCATGTTAGC 59.122 41.667 0.00 0.00 37.96 3.09
471 530 4.588899 AGTAAATGTGAGGCATGTTAGCA 58.411 39.130 0.00 0.00 37.96 3.49
472 531 5.009631 AGTAAATGTGAGGCATGTTAGCAA 58.990 37.500 0.00 0.00 37.96 3.91
473 532 4.445452 AAATGTGAGGCATGTTAGCAAG 57.555 40.909 0.00 0.00 37.96 4.01
474 533 1.167851 TGTGAGGCATGTTAGCAAGC 58.832 50.000 0.00 0.00 38.47 4.01
475 534 1.167851 GTGAGGCATGTTAGCAAGCA 58.832 50.000 9.02 0.00 40.70 3.91
476 535 1.541147 GTGAGGCATGTTAGCAAGCAA 59.459 47.619 9.02 0.00 40.70 3.91
477 536 2.030007 GTGAGGCATGTTAGCAAGCAAA 60.030 45.455 9.02 0.00 40.70 3.68
478 537 2.827322 TGAGGCATGTTAGCAAGCAAAT 59.173 40.909 9.02 0.00 40.70 2.32
479 538 4.015764 TGAGGCATGTTAGCAAGCAAATA 58.984 39.130 9.02 0.00 40.70 1.40
480 539 4.142403 TGAGGCATGTTAGCAAGCAAATAC 60.142 41.667 9.02 0.00 40.70 1.89
481 540 3.763360 AGGCATGTTAGCAAGCAAATACA 59.237 39.130 9.02 0.00 40.70 2.29
482 541 3.859386 GGCATGTTAGCAAGCAAATACAC 59.141 43.478 9.02 0.00 40.70 2.90
483 542 4.484236 GCATGTTAGCAAGCAAATACACA 58.516 39.130 1.66 0.00 38.97 3.72
484 543 4.560035 GCATGTTAGCAAGCAAATACACAG 59.440 41.667 1.66 0.00 38.97 3.66
485 544 5.619757 GCATGTTAGCAAGCAAATACACAGA 60.620 40.000 1.66 0.00 38.97 3.41
486 545 6.380995 CATGTTAGCAAGCAAATACACAGAA 58.619 36.000 0.00 0.00 0.00 3.02
487 546 5.757886 TGTTAGCAAGCAAATACACAGAAC 58.242 37.500 0.00 0.00 0.00 3.01
488 547 5.298026 TGTTAGCAAGCAAATACACAGAACA 59.702 36.000 0.00 0.00 0.00 3.18
489 548 6.016360 TGTTAGCAAGCAAATACACAGAACAT 60.016 34.615 0.00 0.00 0.00 2.71
490 549 5.051891 AGCAAGCAAATACACAGAACATC 57.948 39.130 0.00 0.00 0.00 3.06
491 550 4.520111 AGCAAGCAAATACACAGAACATCA 59.480 37.500 0.00 0.00 0.00 3.07
492 551 5.184479 AGCAAGCAAATACACAGAACATCAT 59.816 36.000 0.00 0.00 0.00 2.45
493 552 5.287752 GCAAGCAAATACACAGAACATCATG 59.712 40.000 0.00 0.00 0.00 3.07
494 553 5.571784 AGCAAATACACAGAACATCATGG 57.428 39.130 0.00 0.00 0.00 3.66
495 554 4.107622 GCAAATACACAGAACATCATGGC 58.892 43.478 0.00 0.00 0.00 4.40
496 555 4.142315 GCAAATACACAGAACATCATGGCT 60.142 41.667 0.00 0.00 0.00 4.75
497 556 5.575957 CAAATACACAGAACATCATGGCTC 58.424 41.667 0.00 0.00 0.00 4.70
498 557 2.865119 ACACAGAACATCATGGCTCA 57.135 45.000 0.00 0.00 0.00 4.26
499 558 3.144657 ACACAGAACATCATGGCTCAA 57.855 42.857 0.00 0.00 0.00 3.02
500 559 3.489355 ACACAGAACATCATGGCTCAAA 58.511 40.909 0.00 0.00 0.00 2.69
501 560 4.084287 ACACAGAACATCATGGCTCAAAT 58.916 39.130 0.00 0.00 0.00 2.32
502 561 4.525487 ACACAGAACATCATGGCTCAAATT 59.475 37.500 0.00 0.00 0.00 1.82
503 562 4.862574 CACAGAACATCATGGCTCAAATTG 59.137 41.667 0.00 0.00 0.00 2.32
504 563 3.863424 CAGAACATCATGGCTCAAATTGC 59.137 43.478 0.00 0.00 0.00 3.56
505 564 3.512329 AGAACATCATGGCTCAAATTGCA 59.488 39.130 0.00 0.00 0.00 4.08
506 565 3.241067 ACATCATGGCTCAAATTGCAC 57.759 42.857 0.00 0.00 0.00 4.57
507 566 2.190161 CATCATGGCTCAAATTGCACG 58.810 47.619 0.00 0.00 0.00 5.34
508 567 0.527113 TCATGGCTCAAATTGCACGG 59.473 50.000 0.00 0.00 0.00 4.94
509 568 0.527113 CATGGCTCAAATTGCACGGA 59.473 50.000 0.00 0.00 0.00 4.69
510 569 1.135527 CATGGCTCAAATTGCACGGAT 59.864 47.619 0.00 0.00 0.00 4.18
511 570 0.810648 TGGCTCAAATTGCACGGATC 59.189 50.000 0.00 0.00 0.00 3.36
512 571 0.810648 GGCTCAAATTGCACGGATCA 59.189 50.000 0.00 0.00 0.00 2.92
513 572 1.202222 GGCTCAAATTGCACGGATCAG 60.202 52.381 0.00 0.00 0.00 2.90
514 573 1.796617 GCTCAAATTGCACGGATCAGC 60.797 52.381 0.00 0.00 0.00 4.26
515 574 1.469703 CTCAAATTGCACGGATCAGCA 59.530 47.619 3.01 3.01 39.32 4.41
516 575 2.093890 TCAAATTGCACGGATCAGCAT 58.906 42.857 7.43 0.00 40.94 3.79
522 581 1.737236 TGCACGGATCAGCATTGTTAC 59.263 47.619 3.01 0.00 35.51 2.50
523 582 2.009774 GCACGGATCAGCATTGTTACT 58.990 47.619 0.00 0.00 0.00 2.24
524 583 3.194861 GCACGGATCAGCATTGTTACTA 58.805 45.455 0.00 0.00 0.00 1.82
532 591 6.041069 GGATCAGCATTGTTACTACTCCTACT 59.959 42.308 0.00 0.00 0.00 2.57
534 593 6.631016 TCAGCATTGTTACTACTCCTACTTG 58.369 40.000 0.00 0.00 0.00 3.16
537 596 5.811100 GCATTGTTACTACTCCTACTTGGAC 59.189 44.000 0.00 0.00 40.56 4.02
539 598 3.441572 TGTTACTACTCCTACTTGGACGC 59.558 47.826 0.00 0.00 40.56 5.19
540 599 2.211250 ACTACTCCTACTTGGACGCA 57.789 50.000 0.00 0.00 40.56 5.24
541 600 2.093106 ACTACTCCTACTTGGACGCAG 58.907 52.381 0.00 0.00 40.56 5.18
542 601 1.405821 CTACTCCTACTTGGACGCAGG 59.594 57.143 0.00 0.00 40.56 4.85
543 602 0.251653 ACTCCTACTTGGACGCAGGA 60.252 55.000 0.00 0.00 40.56 3.86
555 614 2.673368 GGACGCAGGAGAAGTAACATTG 59.327 50.000 0.00 0.00 0.00 2.82
556 615 3.326747 GACGCAGGAGAAGTAACATTGT 58.673 45.455 0.00 0.00 0.00 2.71
557 616 3.067106 ACGCAGGAGAAGTAACATTGTG 58.933 45.455 0.00 0.00 0.00 3.33
558 617 3.244078 ACGCAGGAGAAGTAACATTGTGA 60.244 43.478 0.00 0.00 0.00 3.58
581 646 1.140407 GCACTACTGTGGCGATCGAC 61.140 60.000 21.57 18.80 43.97 4.20
582 647 0.525668 CACTACTGTGGCGATCGACC 60.526 60.000 20.39 19.00 40.33 4.79
583 648 0.680280 ACTACTGTGGCGATCGACCT 60.680 55.000 20.39 5.96 0.00 3.85
584 649 0.456221 CTACTGTGGCGATCGACCTT 59.544 55.000 20.39 1.95 0.00 3.50
585 650 1.674441 CTACTGTGGCGATCGACCTTA 59.326 52.381 20.39 10.89 0.00 2.69
586 651 0.892755 ACTGTGGCGATCGACCTTAA 59.107 50.000 20.39 0.00 0.00 1.85
587 652 1.480954 ACTGTGGCGATCGACCTTAAT 59.519 47.619 20.39 0.00 0.00 1.40
588 653 2.093658 ACTGTGGCGATCGACCTTAATT 60.094 45.455 20.39 0.00 0.00 1.40
590 655 3.713288 TGTGGCGATCGACCTTAATTAG 58.287 45.455 20.39 0.00 0.00 1.73
744 839 1.586154 AAGATGAAACGCGCTTGGGG 61.586 55.000 5.73 0.00 0.00 4.96
745 840 3.051392 GATGAAACGCGCTTGGGGG 62.051 63.158 5.73 0.54 0.00 5.40
776 872 1.071385 CTTGCTCGCTTCCATATCCCT 59.929 52.381 0.00 0.00 0.00 4.20
857 964 1.501582 GACCATGGAGCTCCTACCTT 58.498 55.000 32.28 13.63 36.82 3.50
948 1100 2.777459 ACCAGCCTACTAGCCATAGT 57.223 50.000 0.00 0.00 44.57 2.12
965 1117 0.321021 AGTCAGAAGCCACTCAGCAG 59.679 55.000 0.00 0.00 34.23 4.24
1041 1219 1.721926 CTTCTTCTGCTCGTCGTTTCC 59.278 52.381 0.00 0.00 0.00 3.13
1160 1338 2.892425 GGAGCCGGAGTTCATGCG 60.892 66.667 5.05 0.00 43.30 4.73
1506 1817 1.837051 TCTCACGGTGTTCTGCCCT 60.837 57.895 8.17 0.00 0.00 5.19
1691 2002 0.537143 AACAAGAGCCACGCCATCAA 60.537 50.000 0.00 0.00 0.00 2.57
1983 2305 2.143925 CTGACCGGGTTTCTTCTTCAC 58.856 52.381 6.32 0.00 0.00 3.18
2042 2368 8.718102 TTATCTGGTTAAGTTTATCTGCACTC 57.282 34.615 0.00 0.00 0.00 3.51
2139 2482 1.795768 CATGGCACGTACTGTTCTGT 58.204 50.000 0.00 0.00 0.00 3.41
2157 2504 3.252701 TCTGTCGGAGTTAAGTGTGAGTC 59.747 47.826 0.00 0.00 0.00 3.36
2169 2516 0.465460 TGTGAGTCCCTGTGTTTGGC 60.465 55.000 0.00 0.00 0.00 4.52
2196 2543 4.452795 TGTGCTACAGCTTAATTTGCGTAA 59.547 37.500 2.44 0.00 42.66 3.18
2256 2603 5.878406 TTCTCCCTAGAAATGGAAGCTAG 57.122 43.478 0.00 0.00 38.81 3.42
2257 2604 4.227197 TCTCCCTAGAAATGGAAGCTAGG 58.773 47.826 0.00 0.00 46.96 3.02
2259 2606 3.133141 CCTAGAAATGGAAGCTAGGGC 57.867 52.381 0.00 0.00 44.80 5.19
2321 2668 1.604278 GAGAACCAGTGCACCAAACTC 59.396 52.381 14.63 12.30 0.00 3.01
2335 2682 4.452455 CACCAAACTCTGACAATACACTCC 59.548 45.833 0.00 0.00 0.00 3.85
2338 2685 3.577649 ACTCTGACAATACACTCCGTG 57.422 47.619 0.00 0.00 39.75 4.94
2340 2687 3.057456 ACTCTGACAATACACTCCGTGAC 60.057 47.826 0.38 0.00 36.96 3.67
2366 2713 5.009631 TCTGACGGATCCAAATTTGAATGT 58.990 37.500 19.86 9.92 0.00 2.71
2381 2728 4.418013 TGAATGTACAAATGCAAGTCCG 57.582 40.909 0.00 0.00 0.00 4.79
2384 2731 0.515564 GTACAAATGCAAGTCCGCGT 59.484 50.000 4.92 0.00 33.35 6.01
2386 2733 0.515564 ACAAATGCAAGTCCGCGTAC 59.484 50.000 4.92 0.00 33.35 3.67
2387 2734 0.515127 CAAATGCAAGTCCGCGTACA 59.485 50.000 4.17 0.00 33.35 2.90
2390 2737 1.448985 ATGCAAGTCCGCGTACAAAT 58.551 45.000 4.17 0.00 33.35 2.32
2392 2739 0.793104 GCAAGTCCGCGTACAAATGC 60.793 55.000 4.17 7.98 0.00 3.56
2396 2747 0.515564 GTCCGCGTACAAATGCAAGT 59.484 50.000 4.92 0.00 37.49 3.16
2399 2750 0.518355 CGCGTACAAATGCAAGTCCG 60.518 55.000 0.00 0.00 37.49 4.79
2405 2756 1.888512 ACAAATGCAAGTCCGCTCAAT 59.111 42.857 0.00 0.00 0.00 2.57
2409 2760 1.603456 TGCAAGTCCGCTCAATCAAA 58.397 45.000 0.00 0.00 0.00 2.69
2416 3365 4.832248 AGTCCGCTCAATCAAAACTCATA 58.168 39.130 0.00 0.00 0.00 2.15
2417 3366 5.245531 AGTCCGCTCAATCAAAACTCATAA 58.754 37.500 0.00 0.00 0.00 1.90
2532 3498 7.448748 ACCTCCAAAACACATGAAATACTAC 57.551 36.000 0.00 0.00 0.00 2.73
2541 3507 5.183140 ACACATGAAATACTACAAACAGGGC 59.817 40.000 0.00 0.00 0.00 5.19
2614 3580 1.133790 GCTCAAGTGCTAGCCCATTTG 59.866 52.381 13.29 8.05 34.79 2.32
2619 3585 3.370840 AGTGCTAGCCCATTTGAATGA 57.629 42.857 13.29 0.00 38.70 2.57
2628 3594 3.812609 GCCCATTTGAATGAACGGTTTTT 59.187 39.130 5.32 0.00 38.70 1.94
2659 3625 1.009389 CGTTGTTGGTCTCCTCTCGC 61.009 60.000 0.00 0.00 0.00 5.03
2680 3646 3.057174 GCTCCTGATACAAGGACCTATCG 60.057 52.174 0.00 0.00 41.60 2.92
2712 3678 2.823154 GTCCAAAATGAATCGGGGTTCA 59.177 45.455 0.00 0.00 41.88 3.18
2746 3712 4.521130 ACGATCACATCACACAACTACT 57.479 40.909 0.00 0.00 0.00 2.57
2748 3714 4.686091 ACGATCACATCACACAACTACTTG 59.314 41.667 0.00 0.00 0.00 3.16
2749 3715 4.091945 CGATCACATCACACAACTACTTGG 59.908 45.833 0.00 0.00 0.00 3.61
2753 3719 0.840617 TCACACAACTACTTGGGGCA 59.159 50.000 0.00 0.00 34.76 5.36
2774 3740 1.752833 CGCCCATACCTTCCCCTAC 59.247 63.158 0.00 0.00 0.00 3.18
2775 3741 1.052124 CGCCCATACCTTCCCCTACA 61.052 60.000 0.00 0.00 0.00 2.74
2776 3742 0.472898 GCCCATACCTTCCCCTACAC 59.527 60.000 0.00 0.00 0.00 2.90
2777 3743 1.137697 CCCATACCTTCCCCTACACC 58.862 60.000 0.00 0.00 0.00 4.16
2778 3744 1.626913 CCCATACCTTCCCCTACACCA 60.627 57.143 0.00 0.00 0.00 4.17
2779 3745 1.489230 CCATACCTTCCCCTACACCAC 59.511 57.143 0.00 0.00 0.00 4.16
2780 3746 1.138266 CATACCTTCCCCTACACCACG 59.862 57.143 0.00 0.00 0.00 4.94
2781 3747 0.409092 TACCTTCCCCTACACCACGA 59.591 55.000 0.00 0.00 0.00 4.35
2782 3748 0.903454 ACCTTCCCCTACACCACGAG 60.903 60.000 0.00 0.00 0.00 4.18
2783 3749 0.903454 CCTTCCCCTACACCACGAGT 60.903 60.000 0.00 0.00 0.00 4.18
2784 3750 1.617804 CCTTCCCCTACACCACGAGTA 60.618 57.143 0.00 0.00 0.00 2.59
2785 3751 2.173519 CTTCCCCTACACCACGAGTAA 58.826 52.381 0.00 0.00 0.00 2.24
2786 3752 2.537633 TCCCCTACACCACGAGTAAT 57.462 50.000 0.00 0.00 0.00 1.89
2787 3753 2.104967 TCCCCTACACCACGAGTAATG 58.895 52.381 0.00 0.00 0.00 1.90
2788 3754 2.104967 CCCCTACACCACGAGTAATGA 58.895 52.381 0.00 0.00 0.00 2.57
2789 3755 2.698797 CCCCTACACCACGAGTAATGAT 59.301 50.000 0.00 0.00 0.00 2.45
2790 3756 3.893200 CCCCTACACCACGAGTAATGATA 59.107 47.826 0.00 0.00 0.00 2.15
2791 3757 4.261909 CCCCTACACCACGAGTAATGATAC 60.262 50.000 0.00 0.00 0.00 2.24
2792 3758 4.340097 CCCTACACCACGAGTAATGATACA 59.660 45.833 0.00 0.00 34.29 2.29
2793 3759 5.279384 CCTACACCACGAGTAATGATACAC 58.721 45.833 0.00 0.00 34.29 2.90
2794 3760 4.119442 ACACCACGAGTAATGATACACC 57.881 45.455 0.00 0.00 34.29 4.16
2795 3761 3.767673 ACACCACGAGTAATGATACACCT 59.232 43.478 0.00 0.00 34.29 4.00
2796 3762 4.951715 ACACCACGAGTAATGATACACCTA 59.048 41.667 0.00 0.00 34.29 3.08
2797 3763 5.163581 ACACCACGAGTAATGATACACCTAC 60.164 44.000 0.00 0.00 34.29 3.18
2798 3764 4.036027 ACCACGAGTAATGATACACCTACG 59.964 45.833 0.00 0.00 34.29 3.51
2799 3765 4.036027 CCACGAGTAATGATACACCTACGT 59.964 45.833 0.00 0.00 34.29 3.57
2800 3766 5.237127 CCACGAGTAATGATACACCTACGTA 59.763 44.000 0.00 0.00 34.29 3.57
2801 3767 6.238456 CCACGAGTAATGATACACCTACGTAA 60.238 42.308 0.00 0.00 34.29 3.18
2802 3768 7.188834 CACGAGTAATGATACACCTACGTAAA 58.811 38.462 0.00 0.00 34.29 2.01
2803 3769 7.164826 CACGAGTAATGATACACCTACGTAAAC 59.835 40.741 0.00 0.00 34.29 2.01
2804 3770 7.148255 ACGAGTAATGATACACCTACGTAAACA 60.148 37.037 0.00 0.00 34.29 2.83
2805 3771 7.697710 CGAGTAATGATACACCTACGTAAACAA 59.302 37.037 0.00 0.00 34.29 2.83
2806 3772 8.693542 AGTAATGATACACCTACGTAAACAAC 57.306 34.615 0.00 0.00 34.29 3.32
2807 3773 8.526147 AGTAATGATACACCTACGTAAACAACT 58.474 33.333 0.00 0.00 34.29 3.16
2808 3774 9.143631 GTAATGATACACCTACGTAAACAACTT 57.856 33.333 0.00 0.00 32.02 2.66
2809 3775 8.611654 AATGATACACCTACGTAAACAACTTT 57.388 30.769 0.00 0.00 0.00 2.66
2810 3776 9.709495 AATGATACACCTACGTAAACAACTTTA 57.291 29.630 0.00 0.00 0.00 1.85
2811 3777 8.519492 TGATACACCTACGTAAACAACTTTAC 57.481 34.615 0.00 0.00 38.86 2.01
2836 3802 7.868587 CGTAGTAACTTACGTAATGACTTGTG 58.131 38.462 17.09 4.41 41.01 3.33
2837 3803 7.535258 CGTAGTAACTTACGTAATGACTTGTGT 59.465 37.037 17.09 4.94 41.01 3.72
2838 3804 7.633361 AGTAACTTACGTAATGACTTGTGTG 57.367 36.000 8.76 0.00 0.00 3.82
2839 3805 5.917541 AACTTACGTAATGACTTGTGTGG 57.082 39.130 8.76 0.00 0.00 4.17
2840 3806 3.744426 ACTTACGTAATGACTTGTGTGGC 59.256 43.478 8.76 0.00 0.00 5.01
2841 3807 2.248280 ACGTAATGACTTGTGTGGCA 57.752 45.000 0.00 0.00 0.00 4.92
2842 3808 2.778299 ACGTAATGACTTGTGTGGCAT 58.222 42.857 0.00 0.00 0.00 4.40
2843 3809 3.146066 ACGTAATGACTTGTGTGGCATT 58.854 40.909 0.00 1.16 35.38 3.56
2844 3810 3.568007 ACGTAATGACTTGTGTGGCATTT 59.432 39.130 0.75 0.00 33.45 2.32
2845 3811 4.757657 ACGTAATGACTTGTGTGGCATTTA 59.242 37.500 0.75 0.00 33.45 1.40
2846 3812 5.414454 ACGTAATGACTTGTGTGGCATTTAT 59.586 36.000 0.75 0.00 33.45 1.40
2847 3813 5.965334 CGTAATGACTTGTGTGGCATTTATC 59.035 40.000 0.75 0.00 33.45 1.75
2848 3814 6.183360 CGTAATGACTTGTGTGGCATTTATCT 60.183 38.462 0.75 0.00 33.45 1.98
2849 3815 5.571784 ATGACTTGTGTGGCATTTATCTG 57.428 39.130 0.00 0.00 0.00 2.90
2850 3816 4.397420 TGACTTGTGTGGCATTTATCTGT 58.603 39.130 0.00 0.00 0.00 3.41
2851 3817 4.826733 TGACTTGTGTGGCATTTATCTGTT 59.173 37.500 0.00 0.00 0.00 3.16
2852 3818 5.125100 ACTTGTGTGGCATTTATCTGTTG 57.875 39.130 0.00 0.00 0.00 3.33
2853 3819 4.022068 ACTTGTGTGGCATTTATCTGTTGG 60.022 41.667 0.00 0.00 0.00 3.77
2854 3820 3.760738 TGTGTGGCATTTATCTGTTGGA 58.239 40.909 0.00 0.00 0.00 3.53
2855 3821 4.343231 TGTGTGGCATTTATCTGTTGGAT 58.657 39.130 0.00 0.00 38.38 3.41
2856 3822 4.158209 TGTGTGGCATTTATCTGTTGGATG 59.842 41.667 0.00 0.00 35.98 3.51
2857 3823 4.398988 GTGTGGCATTTATCTGTTGGATGA 59.601 41.667 0.00 0.00 35.98 2.92
2858 3824 5.015515 TGTGGCATTTATCTGTTGGATGAA 58.984 37.500 0.00 0.00 35.03 2.57
2859 3825 5.479724 TGTGGCATTTATCTGTTGGATGAAA 59.520 36.000 0.00 0.00 34.39 2.69
2860 3826 6.154877 TGTGGCATTTATCTGTTGGATGAAAT 59.845 34.615 0.00 0.00 34.39 2.17
2861 3827 7.043565 GTGGCATTTATCTGTTGGATGAAATT 58.956 34.615 0.00 0.00 34.39 1.82
2862 3828 8.196771 GTGGCATTTATCTGTTGGATGAAATTA 58.803 33.333 0.00 0.00 34.39 1.40
2863 3829 8.415553 TGGCATTTATCTGTTGGATGAAATTAG 58.584 33.333 0.00 0.00 34.39 1.73
2864 3830 7.869429 GGCATTTATCTGTTGGATGAAATTAGG 59.131 37.037 0.00 0.00 34.39 2.69
2865 3831 8.632679 GCATTTATCTGTTGGATGAAATTAGGA 58.367 33.333 0.00 0.00 34.39 2.94
2868 3834 9.618890 TTTATCTGTTGGATGAAATTAGGAGAG 57.381 33.333 0.00 0.00 35.98 3.20
2869 3835 5.994250 TCTGTTGGATGAAATTAGGAGAGG 58.006 41.667 0.00 0.00 0.00 3.69
2870 3836 5.104360 TCTGTTGGATGAAATTAGGAGAGGG 60.104 44.000 0.00 0.00 0.00 4.30
2871 3837 4.079787 TGTTGGATGAAATTAGGAGAGGGG 60.080 45.833 0.00 0.00 0.00 4.79
2872 3838 3.056080 TGGATGAAATTAGGAGAGGGGG 58.944 50.000 0.00 0.00 0.00 5.40
2889 3855 4.539235 GGCCCACCCACTTGAATT 57.461 55.556 0.00 0.00 0.00 2.17
2890 3856 3.681909 GGCCCACCCACTTGAATTA 57.318 52.632 0.00 0.00 0.00 1.40
2891 3857 1.474330 GGCCCACCCACTTGAATTAG 58.526 55.000 0.00 0.00 0.00 1.73
2892 3858 1.474330 GCCCACCCACTTGAATTAGG 58.526 55.000 0.00 0.00 0.00 2.69
2893 3859 1.959989 GCCCACCCACTTGAATTAGGG 60.960 57.143 0.00 0.00 46.96 3.53
2894 3860 1.341976 CCCACCCACTTGAATTAGGGG 60.342 57.143 0.00 0.00 45.83 4.79
2899 3865 2.949447 CCACTTGAATTAGGGGGATGG 58.051 52.381 0.00 0.00 34.90 3.51
2900 3866 2.424812 CCACTTGAATTAGGGGGATGGG 60.425 54.545 0.00 0.00 34.90 4.00
2901 3867 2.513738 CACTTGAATTAGGGGGATGGGA 59.486 50.000 0.00 0.00 0.00 4.37
2902 3868 2.785857 ACTTGAATTAGGGGGATGGGAG 59.214 50.000 0.00 0.00 0.00 4.30
2903 3869 1.833187 TGAATTAGGGGGATGGGAGG 58.167 55.000 0.00 0.00 0.00 4.30
2904 3870 1.012049 TGAATTAGGGGGATGGGAGGT 59.988 52.381 0.00 0.00 0.00 3.85
2905 3871 2.144450 GAATTAGGGGGATGGGAGGTT 58.856 52.381 0.00 0.00 0.00 3.50
2906 3872 2.320613 ATTAGGGGGATGGGAGGTTT 57.679 50.000 0.00 0.00 0.00 3.27
2907 3873 1.304891 TTAGGGGGATGGGAGGTTTG 58.695 55.000 0.00 0.00 0.00 2.93
2908 3874 0.122435 TAGGGGGATGGGAGGTTTGT 59.878 55.000 0.00 0.00 0.00 2.83
2909 3875 0.780090 AGGGGGATGGGAGGTTTGTT 60.780 55.000 0.00 0.00 0.00 2.83
2910 3876 1.004436 GGGGGATGGGAGGTTTGTTA 58.996 55.000 0.00 0.00 0.00 2.41
2911 3877 1.063942 GGGGGATGGGAGGTTTGTTAG 60.064 57.143 0.00 0.00 0.00 2.34
2912 3878 1.063942 GGGGATGGGAGGTTTGTTAGG 60.064 57.143 0.00 0.00 0.00 2.69
2913 3879 1.920351 GGGATGGGAGGTTTGTTAGGA 59.080 52.381 0.00 0.00 0.00 2.94
2914 3880 2.092375 GGGATGGGAGGTTTGTTAGGAG 60.092 54.545 0.00 0.00 0.00 3.69
2915 3881 2.092375 GGATGGGAGGTTTGTTAGGAGG 60.092 54.545 0.00 0.00 0.00 4.30
2916 3882 1.368374 TGGGAGGTTTGTTAGGAGGG 58.632 55.000 0.00 0.00 0.00 4.30
2917 3883 1.369403 GGGAGGTTTGTTAGGAGGGT 58.631 55.000 0.00 0.00 0.00 4.34
2918 3884 1.709115 GGGAGGTTTGTTAGGAGGGTT 59.291 52.381 0.00 0.00 0.00 4.11
2919 3885 2.914941 GGGAGGTTTGTTAGGAGGGTTA 59.085 50.000 0.00 0.00 0.00 2.85
2920 3886 3.307975 GGGAGGTTTGTTAGGAGGGTTAC 60.308 52.174 0.00 0.00 0.00 2.50
2921 3887 3.328637 GGAGGTTTGTTAGGAGGGTTACA 59.671 47.826 0.00 0.00 0.00 2.41
2922 3888 4.018688 GGAGGTTTGTTAGGAGGGTTACAT 60.019 45.833 0.00 0.00 0.00 2.29
2923 3889 5.190330 GGAGGTTTGTTAGGAGGGTTACATA 59.810 44.000 0.00 0.00 0.00 2.29
2924 3890 6.296605 GGAGGTTTGTTAGGAGGGTTACATAA 60.297 42.308 0.00 0.00 0.00 1.90
2925 3891 7.093965 AGGTTTGTTAGGAGGGTTACATAAA 57.906 36.000 0.00 0.00 0.00 1.40
2926 3892 7.705700 AGGTTTGTTAGGAGGGTTACATAAAT 58.294 34.615 0.00 0.00 0.00 1.40
2927 3893 7.614192 AGGTTTGTTAGGAGGGTTACATAAATG 59.386 37.037 0.00 0.00 0.00 2.32
2928 3894 7.147966 GGTTTGTTAGGAGGGTTACATAAATGG 60.148 40.741 0.00 0.00 0.00 3.16
2929 3895 6.894735 TGTTAGGAGGGTTACATAAATGGA 57.105 37.500 0.00 0.00 0.00 3.41
2930 3896 6.895782 TGTTAGGAGGGTTACATAAATGGAG 58.104 40.000 0.00 0.00 0.00 3.86
2931 3897 4.439253 AGGAGGGTTACATAAATGGAGC 57.561 45.455 0.00 0.00 0.00 4.70
2932 3898 3.785887 AGGAGGGTTACATAAATGGAGCA 59.214 43.478 0.00 0.00 0.00 4.26
2933 3899 3.883489 GGAGGGTTACATAAATGGAGCAC 59.117 47.826 0.00 0.00 0.00 4.40
2934 3900 3.541632 AGGGTTACATAAATGGAGCACG 58.458 45.455 0.00 0.00 29.58 5.34
2935 3901 3.199071 AGGGTTACATAAATGGAGCACGA 59.801 43.478 0.00 0.00 29.58 4.35
2936 3902 3.942748 GGGTTACATAAATGGAGCACGAA 59.057 43.478 0.00 0.00 0.00 3.85
2937 3903 4.035208 GGGTTACATAAATGGAGCACGAAG 59.965 45.833 0.00 0.00 0.00 3.79
2938 3904 4.035208 GGTTACATAAATGGAGCACGAAGG 59.965 45.833 0.00 0.00 0.00 3.46
2939 3905 3.627395 ACATAAATGGAGCACGAAGGA 57.373 42.857 0.00 0.00 0.00 3.36
2940 3906 4.156455 ACATAAATGGAGCACGAAGGAT 57.844 40.909 0.00 0.00 0.00 3.24
2941 3907 4.526970 ACATAAATGGAGCACGAAGGATT 58.473 39.130 0.00 0.00 0.00 3.01
2942 3908 5.680619 ACATAAATGGAGCACGAAGGATTA 58.319 37.500 0.00 0.00 0.00 1.75
2943 3909 5.527582 ACATAAATGGAGCACGAAGGATTAC 59.472 40.000 0.00 0.00 0.00 1.89
2944 3910 2.622064 ATGGAGCACGAAGGATTACC 57.378 50.000 0.00 0.00 0.00 2.85
2960 3926 7.068686 AGGATTACCTAGGTCTAGCATTTTC 57.931 40.000 20.32 1.41 45.83 2.29
2961 3927 5.927115 GGATTACCTAGGTCTAGCATTTTCG 59.073 44.000 20.32 0.00 31.95 3.46
2962 3928 3.821421 ACCTAGGTCTAGCATTTTCGG 57.179 47.619 9.21 0.00 31.95 4.30
2963 3929 3.105283 ACCTAGGTCTAGCATTTTCGGT 58.895 45.455 9.21 0.00 31.95 4.69
2964 3930 4.284178 ACCTAGGTCTAGCATTTTCGGTA 58.716 43.478 9.21 0.00 31.95 4.02
2965 3931 4.341520 ACCTAGGTCTAGCATTTTCGGTAG 59.658 45.833 9.21 0.00 38.14 3.18
2966 3932 3.821421 AGGTCTAGCATTTTCGGTAGG 57.179 47.619 0.00 0.00 37.53 3.18
2967 3933 2.434702 AGGTCTAGCATTTTCGGTAGGG 59.565 50.000 0.00 0.00 37.53 3.53
2968 3934 2.210961 GTCTAGCATTTTCGGTAGGGC 58.789 52.381 0.00 0.00 37.53 5.19
2969 3935 1.140252 TCTAGCATTTTCGGTAGGGCC 59.860 52.381 0.00 0.00 37.53 5.80
2970 3936 0.913205 TAGCATTTTCGGTAGGGCCA 59.087 50.000 6.18 0.00 36.97 5.36
2971 3937 0.679960 AGCATTTTCGGTAGGGCCAC 60.680 55.000 6.18 1.40 36.97 5.01
2972 3938 1.663379 GCATTTTCGGTAGGGCCACC 61.663 60.000 6.18 10.73 36.97 4.61
2973 3939 1.035385 CATTTTCGGTAGGGCCACCC 61.035 60.000 6.18 3.45 45.90 4.61
2984 3950 2.621486 GGCCACCCCTGAATAGACT 58.379 57.895 0.00 0.00 0.00 3.24
2985 3951 1.802553 GGCCACCCCTGAATAGACTA 58.197 55.000 0.00 0.00 0.00 2.59
2986 3952 2.339769 GGCCACCCCTGAATAGACTAT 58.660 52.381 0.00 0.00 0.00 2.12
2987 3953 3.517612 GGCCACCCCTGAATAGACTATA 58.482 50.000 0.00 0.00 0.00 1.31
2988 3954 3.908103 GGCCACCCCTGAATAGACTATAA 59.092 47.826 0.00 0.00 0.00 0.98
2989 3955 4.349930 GGCCACCCCTGAATAGACTATAAA 59.650 45.833 0.00 0.00 0.00 1.40
2990 3956 5.163131 GGCCACCCCTGAATAGACTATAAAA 60.163 44.000 0.00 0.00 0.00 1.52
2991 3957 5.998363 GCCACCCCTGAATAGACTATAAAAG 59.002 44.000 0.00 0.00 0.00 2.27
2992 3958 6.409349 GCCACCCCTGAATAGACTATAAAAGT 60.409 42.308 0.00 0.00 42.80 2.66
2993 3959 7.574607 CCACCCCTGAATAGACTATAAAAGTT 58.425 38.462 0.00 0.00 39.07 2.66
2994 3960 8.053355 CCACCCCTGAATAGACTATAAAAGTTT 58.947 37.037 0.00 0.00 39.07 2.66
2995 3961 9.462606 CACCCCTGAATAGACTATAAAAGTTTT 57.537 33.333 6.06 6.06 39.07 2.43
2996 3962 9.682465 ACCCCTGAATAGACTATAAAAGTTTTC 57.318 33.333 3.60 0.00 39.07 2.29
2997 3963 9.681062 CCCCTGAATAGACTATAAAAGTTTTCA 57.319 33.333 3.60 0.00 39.07 2.69
3028 3994 9.759473 AAATTAGCATGTAGATATATTTGCCCT 57.241 29.630 0.00 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 59 9.755804 CCGATTCATTACATGAGCATATATAGT 57.244 33.333 0.00 0.00 40.94 2.12
106 112 4.371417 ACCTCGTGTCCCGGGCTA 62.371 66.667 18.49 3.46 34.98 3.93
116 128 1.284657 GCTCACATGATCACCTCGTG 58.715 55.000 0.00 3.80 44.99 4.35
117 129 0.179127 CGCTCACATGATCACCTCGT 60.179 55.000 0.00 0.00 0.00 4.18
231 279 1.611977 TGCGATGTACCGGGAGATAAG 59.388 52.381 6.32 0.00 0.00 1.73
272 324 3.399330 ACTCACGTAACCCAAATCACTG 58.601 45.455 0.00 0.00 0.00 3.66
300 352 2.664851 CAACGCGGCCTCTCACAA 60.665 61.111 12.47 0.00 0.00 3.33
339 393 1.135689 GCATGGTAGCAACAACCGAAG 60.136 52.381 0.00 0.00 40.08 3.79
340 394 0.878416 GCATGGTAGCAACAACCGAA 59.122 50.000 0.00 0.00 40.08 4.30
341 395 0.250510 TGCATGGTAGCAACAACCGA 60.251 50.000 0.00 0.00 42.46 4.69
342 396 2.252556 TGCATGGTAGCAACAACCG 58.747 52.632 0.00 0.00 42.46 4.44
351 405 7.434367 TGAGAACCTCATCCATGCATGGTAG 62.434 48.000 38.18 30.97 41.05 3.18
352 406 5.673499 TGAGAACCTCATCCATGCATGGTA 61.673 45.833 38.18 27.07 41.05 3.25
353 407 4.969758 TGAGAACCTCATCCATGCATGGT 61.970 47.826 38.18 25.46 41.05 3.55
354 408 2.422377 TGAGAACCTCATCCATGCATGG 60.422 50.000 35.76 35.76 41.35 3.66
355 409 2.927028 TGAGAACCTCATCCATGCATG 58.073 47.619 20.19 20.19 35.39 4.06
356 410 3.657398 TTGAGAACCTCATCCATGCAT 57.343 42.857 0.00 0.00 40.39 3.96
357 411 3.284617 CATTGAGAACCTCATCCATGCA 58.715 45.455 0.00 0.00 40.39 3.96
358 412 2.034305 GCATTGAGAACCTCATCCATGC 59.966 50.000 13.13 13.13 41.63 4.06
359 413 2.289820 CGCATTGAGAACCTCATCCATG 59.710 50.000 0.00 1.04 40.39 3.66
360 414 2.569059 CGCATTGAGAACCTCATCCAT 58.431 47.619 0.00 0.00 40.39 3.41
361 415 2.013563 GCGCATTGAGAACCTCATCCA 61.014 52.381 0.30 0.00 40.39 3.41
362 416 0.659957 GCGCATTGAGAACCTCATCC 59.340 55.000 0.30 0.00 40.39 3.51
363 417 0.659957 GGCGCATTGAGAACCTCATC 59.340 55.000 10.83 0.00 40.39 2.92
364 418 1.091771 CGGCGCATTGAGAACCTCAT 61.092 55.000 10.83 0.00 40.39 2.90
365 419 1.741401 CGGCGCATTGAGAACCTCA 60.741 57.895 10.83 0.00 38.87 3.86
366 420 3.093278 CGGCGCATTGAGAACCTC 58.907 61.111 10.83 0.00 0.00 3.85
367 421 3.127533 GCGGCGCATTGAGAACCT 61.128 61.111 29.21 0.00 0.00 3.50
368 422 3.127533 AGCGGCGCATTGAGAACC 61.128 61.111 35.02 0.00 0.00 3.62
381 435 0.379669 GAAATGAGATGTGCCAGCGG 59.620 55.000 0.00 0.00 0.00 5.52
433 492 4.729227 TTTACTCTATCGTGACCATGCA 57.271 40.909 0.00 0.00 0.00 3.96
438 497 5.282510 CCTCACATTTACTCTATCGTGACC 58.717 45.833 0.00 0.00 30.70 4.02
439 498 4.740695 GCCTCACATTTACTCTATCGTGAC 59.259 45.833 0.00 0.00 30.70 3.67
440 499 4.401202 TGCCTCACATTTACTCTATCGTGA 59.599 41.667 0.00 0.00 32.79 4.35
441 500 4.682787 TGCCTCACATTTACTCTATCGTG 58.317 43.478 0.00 0.00 0.00 4.35
442 501 5.163405 ACATGCCTCACATTTACTCTATCGT 60.163 40.000 0.00 0.00 36.64 3.73
443 502 5.292765 ACATGCCTCACATTTACTCTATCG 58.707 41.667 0.00 0.00 36.64 2.92
444 503 7.095439 GCTAACATGCCTCACATTTACTCTATC 60.095 40.741 0.00 0.00 36.64 2.08
445 504 6.708054 GCTAACATGCCTCACATTTACTCTAT 59.292 38.462 0.00 0.00 36.64 1.98
446 505 6.049149 GCTAACATGCCTCACATTTACTCTA 58.951 40.000 0.00 0.00 36.64 2.43
447 506 4.878397 GCTAACATGCCTCACATTTACTCT 59.122 41.667 0.00 0.00 36.64 3.24
448 507 4.635765 TGCTAACATGCCTCACATTTACTC 59.364 41.667 0.00 0.00 36.64 2.59
449 508 4.588899 TGCTAACATGCCTCACATTTACT 58.411 39.130 0.00 0.00 36.64 2.24
450 509 4.963276 TGCTAACATGCCTCACATTTAC 57.037 40.909 0.00 0.00 36.64 2.01
451 510 4.142403 GCTTGCTAACATGCCTCACATTTA 60.142 41.667 0.00 0.00 40.22 1.40
452 511 3.367703 GCTTGCTAACATGCCTCACATTT 60.368 43.478 0.00 0.00 40.22 2.32
453 512 2.165030 GCTTGCTAACATGCCTCACATT 59.835 45.455 0.00 0.00 40.22 2.71
454 513 1.747355 GCTTGCTAACATGCCTCACAT 59.253 47.619 0.00 0.00 40.22 3.21
455 514 1.167851 GCTTGCTAACATGCCTCACA 58.832 50.000 0.00 0.00 40.22 3.58
456 515 1.167851 TGCTTGCTAACATGCCTCAC 58.832 50.000 0.00 0.00 44.26 3.51
457 516 1.908344 TTGCTTGCTAACATGCCTCA 58.092 45.000 0.00 0.00 44.26 3.86
458 517 3.515330 ATTTGCTTGCTAACATGCCTC 57.485 42.857 0.00 0.00 44.26 4.70
459 518 3.763360 TGTATTTGCTTGCTAACATGCCT 59.237 39.130 0.00 0.00 44.26 4.75
460 519 3.859386 GTGTATTTGCTTGCTAACATGCC 59.141 43.478 0.00 0.00 44.26 4.40
461 520 4.484236 TGTGTATTTGCTTGCTAACATGC 58.516 39.130 0.00 0.00 44.91 4.06
462 521 5.941733 TCTGTGTATTTGCTTGCTAACATG 58.058 37.500 0.00 0.00 0.00 3.21
463 522 6.016360 TGTTCTGTGTATTTGCTTGCTAACAT 60.016 34.615 0.00 0.00 0.00 2.71
464 523 5.298026 TGTTCTGTGTATTTGCTTGCTAACA 59.702 36.000 0.00 0.00 0.00 2.41
465 524 5.757886 TGTTCTGTGTATTTGCTTGCTAAC 58.242 37.500 0.00 0.00 0.00 2.34
466 525 6.206438 TGATGTTCTGTGTATTTGCTTGCTAA 59.794 34.615 0.00 0.00 0.00 3.09
467 526 5.704978 TGATGTTCTGTGTATTTGCTTGCTA 59.295 36.000 0.00 0.00 0.00 3.49
468 527 4.520111 TGATGTTCTGTGTATTTGCTTGCT 59.480 37.500 0.00 0.00 0.00 3.91
469 528 4.797471 TGATGTTCTGTGTATTTGCTTGC 58.203 39.130 0.00 0.00 0.00 4.01
470 529 5.803461 CCATGATGTTCTGTGTATTTGCTTG 59.197 40.000 0.00 0.00 0.00 4.01
471 530 5.622914 GCCATGATGTTCTGTGTATTTGCTT 60.623 40.000 0.00 0.00 0.00 3.91
472 531 4.142315 GCCATGATGTTCTGTGTATTTGCT 60.142 41.667 0.00 0.00 0.00 3.91
473 532 4.107622 GCCATGATGTTCTGTGTATTTGC 58.892 43.478 0.00 0.00 0.00 3.68
474 533 5.124297 TGAGCCATGATGTTCTGTGTATTTG 59.876 40.000 0.00 0.00 0.00 2.32
475 534 5.255687 TGAGCCATGATGTTCTGTGTATTT 58.744 37.500 0.00 0.00 0.00 1.40
476 535 4.847198 TGAGCCATGATGTTCTGTGTATT 58.153 39.130 0.00 0.00 0.00 1.89
477 536 4.492494 TGAGCCATGATGTTCTGTGTAT 57.508 40.909 0.00 0.00 0.00 2.29
478 537 3.979101 TGAGCCATGATGTTCTGTGTA 57.021 42.857 0.00 0.00 0.00 2.90
479 538 2.865119 TGAGCCATGATGTTCTGTGT 57.135 45.000 0.00 0.00 0.00 3.72
480 539 4.713824 ATTTGAGCCATGATGTTCTGTG 57.286 40.909 0.00 0.00 0.00 3.66
481 540 4.619863 GCAATTTGAGCCATGATGTTCTGT 60.620 41.667 0.00 0.00 0.00 3.41
482 541 3.863424 GCAATTTGAGCCATGATGTTCTG 59.137 43.478 0.00 0.00 0.00 3.02
483 542 3.512329 TGCAATTTGAGCCATGATGTTCT 59.488 39.130 0.00 0.00 0.00 3.01
484 543 3.615496 GTGCAATTTGAGCCATGATGTTC 59.385 43.478 0.00 0.00 0.00 3.18
485 544 3.592059 GTGCAATTTGAGCCATGATGTT 58.408 40.909 0.00 0.00 0.00 2.71
486 545 2.416296 CGTGCAATTTGAGCCATGATGT 60.416 45.455 0.00 0.00 0.00 3.06
487 546 2.190161 CGTGCAATTTGAGCCATGATG 58.810 47.619 0.00 0.00 0.00 3.07
488 547 1.135527 CCGTGCAATTTGAGCCATGAT 59.864 47.619 0.00 0.00 0.00 2.45
489 548 0.527113 CCGTGCAATTTGAGCCATGA 59.473 50.000 0.00 0.00 0.00 3.07
490 549 0.527113 TCCGTGCAATTTGAGCCATG 59.473 50.000 0.00 0.00 0.00 3.66
491 550 1.406539 GATCCGTGCAATTTGAGCCAT 59.593 47.619 0.00 0.00 0.00 4.40
492 551 0.810648 GATCCGTGCAATTTGAGCCA 59.189 50.000 0.00 0.00 0.00 4.75
493 552 0.810648 TGATCCGTGCAATTTGAGCC 59.189 50.000 0.00 0.00 0.00 4.70
494 553 1.796617 GCTGATCCGTGCAATTTGAGC 60.797 52.381 0.00 0.00 0.00 4.26
495 554 1.469703 TGCTGATCCGTGCAATTTGAG 59.530 47.619 0.00 0.00 36.15 3.02
496 555 1.532523 TGCTGATCCGTGCAATTTGA 58.467 45.000 0.00 0.00 36.15 2.69
497 556 2.572191 ATGCTGATCCGTGCAATTTG 57.428 45.000 8.76 0.00 42.74 2.32
498 557 2.231964 ACAATGCTGATCCGTGCAATTT 59.768 40.909 8.76 0.00 42.74 1.82
499 558 1.820519 ACAATGCTGATCCGTGCAATT 59.179 42.857 8.76 3.20 42.74 2.32
500 559 1.466856 ACAATGCTGATCCGTGCAAT 58.533 45.000 8.76 0.00 42.74 3.56
501 560 1.246649 AACAATGCTGATCCGTGCAA 58.753 45.000 8.76 0.00 42.74 4.08
502 561 1.737236 GTAACAATGCTGATCCGTGCA 59.263 47.619 7.43 7.43 43.67 4.57
503 562 2.009774 AGTAACAATGCTGATCCGTGC 58.990 47.619 0.00 0.00 0.00 5.34
504 563 4.433615 AGTAGTAACAATGCTGATCCGTG 58.566 43.478 0.00 0.00 0.00 4.94
505 564 4.441634 GGAGTAGTAACAATGCTGATCCGT 60.442 45.833 0.00 0.00 0.00 4.69
506 565 4.051922 GGAGTAGTAACAATGCTGATCCG 58.948 47.826 0.00 0.00 0.00 4.18
507 566 5.283457 AGGAGTAGTAACAATGCTGATCC 57.717 43.478 0.00 0.00 31.58 3.36
508 567 7.045126 AGTAGGAGTAGTAACAATGCTGATC 57.955 40.000 0.00 0.00 0.00 2.92
509 568 7.268586 CAAGTAGGAGTAGTAACAATGCTGAT 58.731 38.462 0.00 0.00 0.00 2.90
510 569 6.351033 CCAAGTAGGAGTAGTAACAATGCTGA 60.351 42.308 0.00 0.00 41.22 4.26
511 570 5.812642 CCAAGTAGGAGTAGTAACAATGCTG 59.187 44.000 0.00 0.00 41.22 4.41
512 571 5.720041 TCCAAGTAGGAGTAGTAACAATGCT 59.280 40.000 0.00 0.00 43.07 3.79
513 572 5.974108 TCCAAGTAGGAGTAGTAACAATGC 58.026 41.667 0.00 0.00 43.07 3.56
532 591 1.689813 TGTTACTTCTCCTGCGTCCAA 59.310 47.619 0.00 0.00 0.00 3.53
534 593 2.673368 CAATGTTACTTCTCCTGCGTCC 59.327 50.000 0.00 0.00 0.00 4.79
537 596 3.325870 TCACAATGTTACTTCTCCTGCG 58.674 45.455 0.00 0.00 0.00 5.18
539 598 5.391310 GCACATCACAATGTTACTTCTCCTG 60.391 44.000 0.00 0.00 43.74 3.86
540 599 4.697352 GCACATCACAATGTTACTTCTCCT 59.303 41.667 0.00 0.00 43.74 3.69
541 600 4.455533 TGCACATCACAATGTTACTTCTCC 59.544 41.667 0.00 0.00 43.74 3.71
542 601 5.385617 GTGCACATCACAATGTTACTTCTC 58.614 41.667 13.17 0.00 43.74 2.87
543 602 5.362556 GTGCACATCACAATGTTACTTCT 57.637 39.130 13.17 0.00 43.74 2.85
555 614 0.798776 GCCACAGTAGTGCACATCAC 59.201 55.000 21.04 13.47 44.53 3.06
556 615 0.670239 CGCCACAGTAGTGCACATCA 60.670 55.000 21.04 0.00 44.53 3.07
557 616 0.389817 TCGCCACAGTAGTGCACATC 60.390 55.000 21.04 11.31 44.53 3.06
558 617 0.250234 ATCGCCACAGTAGTGCACAT 59.750 50.000 21.04 6.83 44.53 3.21
582 647 5.694006 CGATCAGCACTCCTTCCTAATTAAG 59.306 44.000 0.00 0.00 0.00 1.85
583 648 5.362717 TCGATCAGCACTCCTTCCTAATTAA 59.637 40.000 0.00 0.00 0.00 1.40
584 649 4.893524 TCGATCAGCACTCCTTCCTAATTA 59.106 41.667 0.00 0.00 0.00 1.40
585 650 3.706594 TCGATCAGCACTCCTTCCTAATT 59.293 43.478 0.00 0.00 0.00 1.40
586 651 3.068873 GTCGATCAGCACTCCTTCCTAAT 59.931 47.826 0.00 0.00 0.00 1.73
587 652 2.427453 GTCGATCAGCACTCCTTCCTAA 59.573 50.000 0.00 0.00 0.00 2.69
588 653 2.025155 GTCGATCAGCACTCCTTCCTA 58.975 52.381 0.00 0.00 0.00 2.94
590 655 0.179097 GGTCGATCAGCACTCCTTCC 60.179 60.000 0.00 0.00 0.00 3.46
591 656 0.820871 AGGTCGATCAGCACTCCTTC 59.179 55.000 0.00 0.00 0.00 3.46
592 657 1.270907 AAGGTCGATCAGCACTCCTT 58.729 50.000 0.00 0.00 0.00 3.36
593 658 2.145397 TAAGGTCGATCAGCACTCCT 57.855 50.000 0.00 0.00 0.00 3.69
594 659 2.961526 TTAAGGTCGATCAGCACTCC 57.038 50.000 0.00 0.00 0.00 3.85
595 660 4.985409 CCTAATTAAGGTCGATCAGCACTC 59.015 45.833 0.00 0.00 40.94 3.51
596 661 4.649674 TCCTAATTAAGGTCGATCAGCACT 59.350 41.667 0.00 0.00 46.62 4.40
620 685 4.808077 TGACTAACGCTATTACTCTCCG 57.192 45.455 0.00 0.00 0.00 4.63
623 688 6.691818 CGTGAAATGACTAACGCTATTACTCT 59.308 38.462 0.00 0.00 0.00 3.24
624 689 6.471519 ACGTGAAATGACTAACGCTATTACTC 59.528 38.462 0.00 0.00 39.58 2.59
625 690 6.327934 ACGTGAAATGACTAACGCTATTACT 58.672 36.000 0.00 0.00 39.58 2.24
626 691 6.564854 ACGTGAAATGACTAACGCTATTAC 57.435 37.500 0.00 0.00 39.58 1.89
627 692 6.254157 GGAACGTGAAATGACTAACGCTATTA 59.746 38.462 0.00 0.00 39.58 0.98
712 807 5.162075 CGTTTCATCTTCCTCGTAACTTCT 58.838 41.667 0.00 0.00 0.00 2.85
713 808 4.201599 GCGTTTCATCTTCCTCGTAACTTC 60.202 45.833 0.00 0.00 0.00 3.01
776 872 0.963962 GTCGATCGCCCATAGGGTAA 59.036 55.000 11.09 0.00 46.51 2.85
915 1050 1.871772 CTGGTAGTTGCAGTGCAGC 59.128 57.895 22.93 22.93 40.61 5.25
948 1100 1.004080 GCTGCTGAGTGGCTTCTGA 60.004 57.895 0.00 0.00 0.00 3.27
1093 1271 2.337246 TGTCGTCGATGCCTCGGAA 61.337 57.895 11.57 0.00 45.10 4.30
1267 1448 0.617935 TCGAGATGGGCCATGAACAA 59.382 50.000 26.77 2.18 0.00 2.83
1506 1817 2.347490 GCGAGGGCCTTGTCTTCA 59.653 61.111 21.87 0.00 0.00 3.02
1924 2246 0.464373 ACGGCCATGGCTATCACTTG 60.464 55.000 34.70 16.49 41.60 3.16
1983 2305 2.014335 TCATCTTGTCCACTGCATCG 57.986 50.000 0.00 0.00 0.00 3.84
2139 2482 1.891150 GGGACTCACACTTAACTCCGA 59.109 52.381 0.00 0.00 0.00 4.55
2157 2504 0.599558 CACATGAGCCAAACACAGGG 59.400 55.000 0.00 0.00 0.00 4.45
2169 2516 5.032863 GCAAATTAAGCTGTAGCACATGAG 58.967 41.667 0.00 0.00 45.16 2.90
2196 2543 5.414454 ACGTAAATGCCACACTAAATCATGT 59.586 36.000 0.00 0.00 0.00 3.21
2259 2606 1.376424 ACATGCAAGCTCGGTGGAG 60.376 57.895 0.00 0.00 43.46 3.86
2260 2607 1.672030 CACATGCAAGCTCGGTGGA 60.672 57.895 0.00 0.00 0.00 4.02
2261 2608 2.872557 CACATGCAAGCTCGGTGG 59.127 61.111 0.00 0.00 0.00 4.61
2262 2609 2.177531 GCACATGCAAGCTCGGTG 59.822 61.111 0.00 0.77 41.59 4.94
2263 2610 3.425713 CGCACATGCAAGCTCGGT 61.426 61.111 4.49 0.00 42.21 4.69
2264 2611 3.425713 ACGCACATGCAAGCTCGG 61.426 61.111 4.49 0.00 42.21 4.63
2265 2612 2.202260 CACGCACATGCAAGCTCG 60.202 61.111 4.49 0.00 42.21 5.03
2266 2613 1.154338 GACACGCACATGCAAGCTC 60.154 57.895 4.49 0.00 42.21 4.09
2335 2682 1.226323 GATCCGTCAGACCGTCACG 60.226 63.158 0.40 2.95 0.00 4.35
2338 2685 0.245539 TTTGGATCCGTCAGACCGTC 59.754 55.000 7.39 0.00 0.00 4.79
2340 2687 2.024176 AATTTGGATCCGTCAGACCG 57.976 50.000 7.39 0.00 0.00 4.79
2342 2689 5.106157 ACATTCAAATTTGGATCCGTCAGAC 60.106 40.000 17.90 0.00 0.00 3.51
2344 2691 5.314923 ACATTCAAATTTGGATCCGTCAG 57.685 39.130 17.90 4.71 0.00 3.51
2366 2713 1.727880 GTACGCGGACTTGCATTTGTA 59.272 47.619 15.95 0.00 34.15 2.41
2381 2728 3.290098 CGGACTTGCATTTGTACGC 57.710 52.632 6.68 0.00 33.63 4.42
2384 2731 2.177394 TGAGCGGACTTGCATTTGTA 57.823 45.000 0.00 0.00 37.31 2.41
2386 2733 2.095110 TGATTGAGCGGACTTGCATTTG 60.095 45.455 0.00 0.00 37.31 2.32
2387 2734 2.161855 TGATTGAGCGGACTTGCATTT 58.838 42.857 0.00 0.00 37.31 2.32
2390 2737 1.603456 TTTGATTGAGCGGACTTGCA 58.397 45.000 0.00 0.00 37.31 4.08
2392 2739 3.250762 TGAGTTTTGATTGAGCGGACTTG 59.749 43.478 0.00 0.00 0.00 3.16
2396 2747 6.567687 TTTTATGAGTTTTGATTGAGCGGA 57.432 33.333 0.00 0.00 0.00 5.54
2429 3378 6.234177 ACTTTTGAGTGCATCTAGTAGCTTT 58.766 36.000 0.00 0.00 0.00 3.51
2431 3380 5.413309 ACTTTTGAGTGCATCTAGTAGCT 57.587 39.130 9.81 0.00 0.00 3.32
2432 3381 7.596749 TTAACTTTTGAGTGCATCTAGTAGC 57.403 36.000 0.00 2.82 0.00 3.58
2433 3382 9.593134 AGATTAACTTTTGAGTGCATCTAGTAG 57.407 33.333 0.00 0.00 0.00 2.57
2435 3384 9.944376 TTAGATTAACTTTTGAGTGCATCTAGT 57.056 29.630 0.00 0.00 31.17 2.57
2437 3386 9.944376 ACTTAGATTAACTTTTGAGTGCATCTA 57.056 29.630 0.00 0.00 0.00 1.98
2438 3387 8.854614 ACTTAGATTAACTTTTGAGTGCATCT 57.145 30.769 0.00 0.00 0.00 2.90
2491 3440 4.649674 TGGAGGTTACATCACATAGGTCTC 59.350 45.833 0.00 0.00 0.00 3.36
2493 3442 5.353394 TTGGAGGTTACATCACATAGGTC 57.647 43.478 0.00 0.00 0.00 3.85
2532 3498 1.586028 CATTCCACGGCCCTGTTTG 59.414 57.895 0.00 0.00 0.00 2.93
2541 3507 1.485066 AGTAACCTAGCCATTCCACGG 59.515 52.381 0.00 0.00 0.00 4.94
2552 3518 5.749109 CCAATTGAGCGTCTAAGTAACCTAG 59.251 44.000 7.12 0.00 0.00 3.02
2614 3580 3.568430 AGGTCCTGAAAAACCGTTCATTC 59.432 43.478 0.00 3.82 40.63 2.67
2619 3585 2.686405 GTGAAGGTCCTGAAAAACCGTT 59.314 45.455 0.00 0.00 40.63 4.44
2628 3594 1.474320 CCAACAACGTGAAGGTCCTGA 60.474 52.381 0.00 0.00 0.00 3.86
2659 3625 3.057174 GCGATAGGTCCTTGTATCAGGAG 60.057 52.174 0.00 0.00 44.11 3.69
2680 3646 0.391263 ATTTTGGACGAGGAGACGGC 60.391 55.000 0.00 0.00 40.93 5.68
2712 3678 0.325296 TGATCGTTGAGCCCCTACCT 60.325 55.000 0.00 0.00 0.00 3.08
2753 3719 3.489513 GGGAAGGTATGGGCGGCT 61.490 66.667 9.56 0.00 0.00 5.52
2774 3740 4.386867 AGGTGTATCATTACTCGTGGTG 57.613 45.455 0.00 0.00 0.00 4.17
2775 3741 4.036027 CGTAGGTGTATCATTACTCGTGGT 59.964 45.833 0.00 0.00 0.00 4.16
2776 3742 4.036027 ACGTAGGTGTATCATTACTCGTGG 59.964 45.833 0.00 0.00 0.00 4.94
2777 3743 5.165911 ACGTAGGTGTATCATTACTCGTG 57.834 43.478 0.00 0.00 0.00 4.35
2778 3744 6.925610 TTACGTAGGTGTATCATTACTCGT 57.074 37.500 0.00 0.00 0.00 4.18
2779 3745 7.188834 TGTTTACGTAGGTGTATCATTACTCG 58.811 38.462 0.00 0.00 0.00 4.18
2780 3746 8.801913 GTTGTTTACGTAGGTGTATCATTACTC 58.198 37.037 0.00 0.00 0.00 2.59
2781 3747 8.526147 AGTTGTTTACGTAGGTGTATCATTACT 58.474 33.333 0.00 0.00 0.00 2.24
2782 3748 8.693542 AGTTGTTTACGTAGGTGTATCATTAC 57.306 34.615 0.00 0.00 0.00 1.89
2783 3749 9.709495 AAAGTTGTTTACGTAGGTGTATCATTA 57.291 29.630 0.00 0.00 0.00 1.90
2784 3750 8.611654 AAAGTTGTTTACGTAGGTGTATCATT 57.388 30.769 0.00 0.00 0.00 2.57
2785 3751 9.143631 GTAAAGTTGTTTACGTAGGTGTATCAT 57.856 33.333 0.00 0.00 38.92 2.45
2786 3752 8.519492 GTAAAGTTGTTTACGTAGGTGTATCA 57.481 34.615 0.00 0.00 38.92 2.15
2798 3764 9.974528 CGTAAGTTACTACGTAAAGTTGTTTAC 57.025 33.333 11.17 8.44 43.20 2.01
2820 3786 3.729966 TGCCACACAAGTCATTACGTAA 58.270 40.909 11.02 11.02 0.00 3.18
2821 3787 3.388345 TGCCACACAAGTCATTACGTA 57.612 42.857 0.00 0.00 0.00 3.57
2822 3788 2.248280 TGCCACACAAGTCATTACGT 57.752 45.000 0.00 0.00 0.00 3.57
2823 3789 3.829886 AATGCCACACAAGTCATTACG 57.170 42.857 0.00 0.00 0.00 3.18
2824 3790 6.968904 CAGATAAATGCCACACAAGTCATTAC 59.031 38.462 0.00 0.00 0.00 1.89
2825 3791 6.658816 ACAGATAAATGCCACACAAGTCATTA 59.341 34.615 0.00 0.00 0.00 1.90
2826 3792 5.477984 ACAGATAAATGCCACACAAGTCATT 59.522 36.000 0.00 0.00 0.00 2.57
2827 3793 5.012239 ACAGATAAATGCCACACAAGTCAT 58.988 37.500 0.00 0.00 0.00 3.06
2828 3794 4.397420 ACAGATAAATGCCACACAAGTCA 58.603 39.130 0.00 0.00 0.00 3.41
2829 3795 5.156355 CAACAGATAAATGCCACACAAGTC 58.844 41.667 0.00 0.00 0.00 3.01
2830 3796 4.022068 CCAACAGATAAATGCCACACAAGT 60.022 41.667 0.00 0.00 0.00 3.16
2831 3797 4.218200 TCCAACAGATAAATGCCACACAAG 59.782 41.667 0.00 0.00 0.00 3.16
2832 3798 4.148079 TCCAACAGATAAATGCCACACAA 58.852 39.130 0.00 0.00 0.00 3.33
2833 3799 3.760738 TCCAACAGATAAATGCCACACA 58.239 40.909 0.00 0.00 0.00 3.72
2834 3800 4.398988 TCATCCAACAGATAAATGCCACAC 59.601 41.667 0.00 0.00 32.37 3.82
2835 3801 4.598022 TCATCCAACAGATAAATGCCACA 58.402 39.130 0.00 0.00 32.37 4.17
2836 3802 5.581126 TTCATCCAACAGATAAATGCCAC 57.419 39.130 0.00 0.00 32.37 5.01
2837 3803 6.795144 ATTTCATCCAACAGATAAATGCCA 57.205 33.333 0.00 0.00 32.37 4.92
2838 3804 7.869429 CCTAATTTCATCCAACAGATAAATGCC 59.131 37.037 0.00 0.00 32.37 4.40
2839 3805 8.632679 TCCTAATTTCATCCAACAGATAAATGC 58.367 33.333 0.00 0.00 32.37 3.56
2842 3808 9.618890 CTCTCCTAATTTCATCCAACAGATAAA 57.381 33.333 0.00 0.00 32.37 1.40
2843 3809 8.213679 CCTCTCCTAATTTCATCCAACAGATAA 58.786 37.037 0.00 0.00 32.37 1.75
2844 3810 7.202130 CCCTCTCCTAATTTCATCCAACAGATA 60.202 40.741 0.00 0.00 32.37 1.98
2845 3811 6.410157 CCCTCTCCTAATTTCATCCAACAGAT 60.410 42.308 0.00 0.00 34.66 2.90
2846 3812 5.104360 CCCTCTCCTAATTTCATCCAACAGA 60.104 44.000 0.00 0.00 0.00 3.41
2847 3813 5.128919 CCCTCTCCTAATTTCATCCAACAG 58.871 45.833 0.00 0.00 0.00 3.16
2848 3814 4.079787 CCCCTCTCCTAATTTCATCCAACA 60.080 45.833 0.00 0.00 0.00 3.33
2849 3815 4.464947 CCCCTCTCCTAATTTCATCCAAC 58.535 47.826 0.00 0.00 0.00 3.77
2850 3816 3.463329 CCCCCTCTCCTAATTTCATCCAA 59.537 47.826 0.00 0.00 0.00 3.53
2851 3817 3.056080 CCCCCTCTCCTAATTTCATCCA 58.944 50.000 0.00 0.00 0.00 3.41
2852 3818 3.797559 CCCCCTCTCCTAATTTCATCC 57.202 52.381 0.00 0.00 0.00 3.51
2872 3838 1.474330 CTAATTCAAGTGGGTGGGCC 58.526 55.000 0.00 0.00 0.00 5.80
2873 3839 1.474330 CCTAATTCAAGTGGGTGGGC 58.526 55.000 0.00 0.00 0.00 5.36
2874 3840 1.341976 CCCCTAATTCAAGTGGGTGGG 60.342 57.143 0.00 0.00 38.03 4.61
2875 3841 1.341976 CCCCCTAATTCAAGTGGGTGG 60.342 57.143 0.00 0.00 38.03 4.61
2876 3842 1.638589 TCCCCCTAATTCAAGTGGGTG 59.361 52.381 0.00 0.00 38.03 4.61
2877 3843 2.068831 TCCCCCTAATTCAAGTGGGT 57.931 50.000 0.00 0.00 38.03 4.51
2878 3844 2.424812 CCATCCCCCTAATTCAAGTGGG 60.425 54.545 0.00 0.00 39.37 4.61
2879 3845 2.424812 CCCATCCCCCTAATTCAAGTGG 60.425 54.545 0.00 0.00 0.00 4.00
2880 3846 2.513738 TCCCATCCCCCTAATTCAAGTG 59.486 50.000 0.00 0.00 0.00 3.16
2881 3847 2.785857 CTCCCATCCCCCTAATTCAAGT 59.214 50.000 0.00 0.00 0.00 3.16
2882 3848 2.108952 CCTCCCATCCCCCTAATTCAAG 59.891 54.545 0.00 0.00 0.00 3.02
2883 3849 2.143602 CCTCCCATCCCCCTAATTCAA 58.856 52.381 0.00 0.00 0.00 2.69
2884 3850 1.012049 ACCTCCCATCCCCCTAATTCA 59.988 52.381 0.00 0.00 0.00 2.57
2885 3851 1.834540 ACCTCCCATCCCCCTAATTC 58.165 55.000 0.00 0.00 0.00 2.17
2886 3852 2.247372 CAAACCTCCCATCCCCCTAATT 59.753 50.000 0.00 0.00 0.00 1.40
2887 3853 1.859574 CAAACCTCCCATCCCCCTAAT 59.140 52.381 0.00 0.00 0.00 1.73
2888 3854 1.304891 CAAACCTCCCATCCCCCTAA 58.695 55.000 0.00 0.00 0.00 2.69
2889 3855 0.122435 ACAAACCTCCCATCCCCCTA 59.878 55.000 0.00 0.00 0.00 3.53
2890 3856 0.780090 AACAAACCTCCCATCCCCCT 60.780 55.000 0.00 0.00 0.00 4.79
2891 3857 1.004436 TAACAAACCTCCCATCCCCC 58.996 55.000 0.00 0.00 0.00 5.40
2892 3858 1.063942 CCTAACAAACCTCCCATCCCC 60.064 57.143 0.00 0.00 0.00 4.81
2893 3859 1.920351 TCCTAACAAACCTCCCATCCC 59.080 52.381 0.00 0.00 0.00 3.85
2894 3860 2.092375 CCTCCTAACAAACCTCCCATCC 60.092 54.545 0.00 0.00 0.00 3.51
2895 3861 2.092375 CCCTCCTAACAAACCTCCCATC 60.092 54.545 0.00 0.00 0.00 3.51
2896 3862 1.923148 CCCTCCTAACAAACCTCCCAT 59.077 52.381 0.00 0.00 0.00 4.00
2897 3863 1.368374 CCCTCCTAACAAACCTCCCA 58.632 55.000 0.00 0.00 0.00 4.37
2898 3864 1.369403 ACCCTCCTAACAAACCTCCC 58.631 55.000 0.00 0.00 0.00 4.30
2899 3865 3.328637 TGTAACCCTCCTAACAAACCTCC 59.671 47.826 0.00 0.00 0.00 4.30
2900 3866 4.628963 TGTAACCCTCCTAACAAACCTC 57.371 45.455 0.00 0.00 0.00 3.85
2901 3867 6.707273 TTATGTAACCCTCCTAACAAACCT 57.293 37.500 0.00 0.00 0.00 3.50
2902 3868 7.147966 CCATTTATGTAACCCTCCTAACAAACC 60.148 40.741 0.00 0.00 0.00 3.27
2903 3869 7.612633 TCCATTTATGTAACCCTCCTAACAAAC 59.387 37.037 0.00 0.00 0.00 2.93
2904 3870 7.700846 TCCATTTATGTAACCCTCCTAACAAA 58.299 34.615 0.00 0.00 0.00 2.83
2905 3871 7.273457 TCCATTTATGTAACCCTCCTAACAA 57.727 36.000 0.00 0.00 0.00 2.83
2906 3872 6.634039 GCTCCATTTATGTAACCCTCCTAACA 60.634 42.308 0.00 0.00 0.00 2.41
2907 3873 5.763698 GCTCCATTTATGTAACCCTCCTAAC 59.236 44.000 0.00 0.00 0.00 2.34
2908 3874 5.430417 TGCTCCATTTATGTAACCCTCCTAA 59.570 40.000 0.00 0.00 0.00 2.69
2909 3875 4.972568 TGCTCCATTTATGTAACCCTCCTA 59.027 41.667 0.00 0.00 0.00 2.94
2910 3876 3.785887 TGCTCCATTTATGTAACCCTCCT 59.214 43.478 0.00 0.00 0.00 3.69
2911 3877 3.883489 GTGCTCCATTTATGTAACCCTCC 59.117 47.826 0.00 0.00 0.00 4.30
2912 3878 3.560068 CGTGCTCCATTTATGTAACCCTC 59.440 47.826 0.00 0.00 0.00 4.30
2913 3879 3.199071 TCGTGCTCCATTTATGTAACCCT 59.801 43.478 0.00 0.00 0.00 4.34
2914 3880 3.537580 TCGTGCTCCATTTATGTAACCC 58.462 45.455 0.00 0.00 0.00 4.11
2915 3881 4.035208 CCTTCGTGCTCCATTTATGTAACC 59.965 45.833 0.00 0.00 0.00 2.85
2916 3882 4.873827 TCCTTCGTGCTCCATTTATGTAAC 59.126 41.667 0.00 0.00 0.00 2.50
2917 3883 5.092554 TCCTTCGTGCTCCATTTATGTAA 57.907 39.130 0.00 0.00 0.00 2.41
2918 3884 4.746535 TCCTTCGTGCTCCATTTATGTA 57.253 40.909 0.00 0.00 0.00 2.29
2919 3885 3.627395 TCCTTCGTGCTCCATTTATGT 57.373 42.857 0.00 0.00 0.00 2.29
2920 3886 5.049405 GGTAATCCTTCGTGCTCCATTTATG 60.049 44.000 0.00 0.00 0.00 1.90
2921 3887 5.063880 GGTAATCCTTCGTGCTCCATTTAT 58.936 41.667 0.00 0.00 0.00 1.40
2922 3888 4.163458 AGGTAATCCTTCGTGCTCCATTTA 59.837 41.667 0.00 0.00 42.12 1.40
2923 3889 3.054361 AGGTAATCCTTCGTGCTCCATTT 60.054 43.478 0.00 0.00 42.12 2.32
2924 3890 2.505819 AGGTAATCCTTCGTGCTCCATT 59.494 45.455 0.00 0.00 42.12 3.16
2925 3891 2.119495 AGGTAATCCTTCGTGCTCCAT 58.881 47.619 0.00 0.00 42.12 3.41
2926 3892 1.568504 AGGTAATCCTTCGTGCTCCA 58.431 50.000 0.00 0.00 42.12 3.86
2927 3893 2.036089 CCTAGGTAATCCTTCGTGCTCC 59.964 54.545 0.00 0.00 42.12 4.70
2928 3894 2.694109 ACCTAGGTAATCCTTCGTGCTC 59.306 50.000 14.41 0.00 42.12 4.26
2929 3895 2.694109 GACCTAGGTAATCCTTCGTGCT 59.306 50.000 16.29 0.00 42.12 4.40
2930 3896 2.694109 AGACCTAGGTAATCCTTCGTGC 59.306 50.000 16.29 0.00 42.12 5.34
2931 3897 4.023021 GCTAGACCTAGGTAATCCTTCGTG 60.023 50.000 16.29 0.46 42.12 4.35
2932 3898 4.143543 GCTAGACCTAGGTAATCCTTCGT 58.856 47.826 16.29 0.00 42.12 3.85
2933 3899 4.142790 TGCTAGACCTAGGTAATCCTTCG 58.857 47.826 16.29 3.99 42.12 3.79
2934 3900 6.673839 AATGCTAGACCTAGGTAATCCTTC 57.326 41.667 16.29 0.00 42.12 3.46
2935 3901 7.453141 AAAATGCTAGACCTAGGTAATCCTT 57.547 36.000 16.29 1.86 42.12 3.36
2937 3903 5.927115 CGAAAATGCTAGACCTAGGTAATCC 59.073 44.000 16.29 1.70 33.87 3.01
2938 3904 5.927115 CCGAAAATGCTAGACCTAGGTAATC 59.073 44.000 16.29 2.12 33.87 1.75
2939 3905 5.365895 ACCGAAAATGCTAGACCTAGGTAAT 59.634 40.000 16.29 9.47 33.87 1.89
2940 3906 4.713321 ACCGAAAATGCTAGACCTAGGTAA 59.287 41.667 16.29 5.25 33.87 2.85
2941 3907 4.284178 ACCGAAAATGCTAGACCTAGGTA 58.716 43.478 16.29 0.00 33.87 3.08
2942 3908 3.105283 ACCGAAAATGCTAGACCTAGGT 58.895 45.455 16.26 16.26 33.87 3.08
2943 3909 3.821421 ACCGAAAATGCTAGACCTAGG 57.179 47.619 7.41 7.41 33.87 3.02
2944 3910 4.262079 CCCTACCGAAAATGCTAGACCTAG 60.262 50.000 0.00 0.00 36.29 3.02
2945 3911 3.640029 CCCTACCGAAAATGCTAGACCTA 59.360 47.826 0.00 0.00 0.00 3.08
2946 3912 2.434702 CCCTACCGAAAATGCTAGACCT 59.565 50.000 0.00 0.00 0.00 3.85
2947 3913 2.835027 CCCTACCGAAAATGCTAGACC 58.165 52.381 0.00 0.00 0.00 3.85
2948 3914 2.210961 GCCCTACCGAAAATGCTAGAC 58.789 52.381 0.00 0.00 0.00 2.59
2949 3915 1.140252 GGCCCTACCGAAAATGCTAGA 59.860 52.381 0.00 0.00 0.00 2.43
2950 3916 1.134220 TGGCCCTACCGAAAATGCTAG 60.134 52.381 0.00 0.00 43.94 3.42
2951 3917 0.913205 TGGCCCTACCGAAAATGCTA 59.087 50.000 0.00 0.00 43.94 3.49
2952 3918 0.679960 GTGGCCCTACCGAAAATGCT 60.680 55.000 0.00 0.00 43.94 3.79
2953 3919 1.663379 GGTGGCCCTACCGAAAATGC 61.663 60.000 0.00 0.00 43.94 3.56
2954 3920 1.035385 GGGTGGCCCTACCGAAAATG 61.035 60.000 0.00 0.00 43.94 2.32
2955 3921 1.305287 GGGTGGCCCTACCGAAAAT 59.695 57.895 0.00 0.00 43.94 1.82
2956 3922 2.758434 GGGTGGCCCTACCGAAAA 59.242 61.111 0.00 0.00 43.94 2.29
2957 3923 3.332385 GGGGTGGCCCTACCGAAA 61.332 66.667 0.00 0.00 44.66 3.46
2958 3924 4.342086 AGGGGTGGCCCTACCGAA 62.342 66.667 0.00 0.00 44.66 4.30
2961 3927 0.696485 TATTCAGGGGTGGCCCTACC 60.696 60.000 0.00 0.78 44.66 3.18
2962 3928 0.765510 CTATTCAGGGGTGGCCCTAC 59.234 60.000 0.00 0.00 44.66 3.18
2963 3929 0.645496 TCTATTCAGGGGTGGCCCTA 59.355 55.000 0.00 0.00 44.66 3.53
2964 3930 0.988678 GTCTATTCAGGGGTGGCCCT 60.989 60.000 0.00 0.00 44.66 5.19
2965 3931 0.988678 AGTCTATTCAGGGGTGGCCC 60.989 60.000 0.00 0.00 44.51 5.80
2966 3932 1.802553 TAGTCTATTCAGGGGTGGCC 58.197 55.000 0.00 0.00 0.00 5.36
2967 3933 5.562298 TTTATAGTCTATTCAGGGGTGGC 57.438 43.478 0.00 0.00 0.00 5.01
2968 3934 7.138054 ACTTTTATAGTCTATTCAGGGGTGG 57.862 40.000 0.00 0.00 28.23 4.61
2969 3935 9.462606 AAAACTTTTATAGTCTATTCAGGGGTG 57.537 33.333 0.00 0.00 35.54 4.61
2970 3936 9.682465 GAAAACTTTTATAGTCTATTCAGGGGT 57.318 33.333 0.00 0.00 35.54 4.95
2971 3937 9.681062 TGAAAACTTTTATAGTCTATTCAGGGG 57.319 33.333 0.00 0.00 35.54 4.79
3002 3968 9.759473 AGGGCAAATATATCTACATGCTAATTT 57.241 29.630 0.00 0.00 34.37 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.