Multiple sequence alignment - TraesCS2D01G172400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G172400 chr2D 100.000 3295 0 0 1 3295 116510798 116514092 0.000000e+00 6085.0
1 TraesCS2D01G172400 chr2D 89.617 992 88 6 1282 2270 116490651 116491630 0.000000e+00 1247.0
2 TraesCS2D01G172400 chr2D 90.644 481 41 4 446 925 79334828 79334351 1.290000e-178 636.0
3 TraesCS2D01G172400 chr2D 93.165 395 21 5 25 415 79335552 79335160 2.850000e-160 575.0
4 TraesCS2D01G172400 chr2D 90.291 103 6 2 1065 1164 116490477 116490578 7.420000e-27 132.0
5 TraesCS2D01G172400 chr2D 95.522 67 2 1 2415 2481 71761522 71761587 4.500000e-19 106.0
6 TraesCS2D01G172400 chr2A 85.080 1374 135 37 1065 2423 117745217 117746535 0.000000e+00 1338.0
7 TraesCS2D01G172400 chr2A 88.206 797 81 11 2504 3293 117746535 117747325 0.000000e+00 939.0
8 TraesCS2D01G172400 chr2A 90.566 371 27 7 23 387 688248928 688248560 4.940000e-133 484.0
9 TraesCS2D01G172400 chr2A 94.964 139 5 2 789 927 644886824 644886960 1.990000e-52 217.0
10 TraesCS2D01G172400 chr2B 90.808 990 76 6 1284 2270 166664212 166665189 0.000000e+00 1310.0
11 TraesCS2D01G172400 chr2B 88.986 917 31 25 925 1838 166669832 166670681 0.000000e+00 1070.0
12 TraesCS2D01G172400 chr2B 86.591 798 82 17 2504 3292 166743515 166744296 0.000000e+00 857.0
13 TraesCS2D01G172400 chr2B 90.102 586 28 12 1834 2415 166742948 166743507 0.000000e+00 734.0
14 TraesCS2D01G172400 chr2B 89.840 374 30 7 23 390 14792715 14792344 1.070000e-129 473.0
15 TraesCS2D01G172400 chr2B 93.960 149 9 0 779 927 21948470 21948618 3.310000e-55 226.0
16 TraesCS2D01G172400 chr2B 87.209 86 8 2 2421 2503 347075196 347075111 9.730000e-16 95.3
17 TraesCS2D01G172400 chr6A 88.636 704 52 10 25 722 575552995 575553676 0.000000e+00 832.0
18 TraesCS2D01G172400 chr7D 95.393 521 24 0 405 925 632845333 632844813 0.000000e+00 830.0
19 TraesCS2D01G172400 chr7D 93.850 374 15 7 25 394 632846193 632845824 1.030000e-154 556.0
20 TraesCS2D01G172400 chr7D 84.158 303 10 9 427 729 610524754 610524490 3.260000e-65 259.0
21 TraesCS2D01G172400 chr7D 93.878 147 9 0 779 925 133200386 133200240 4.280000e-54 222.0
22 TraesCS2D01G172400 chr7D 92.000 75 6 0 2415 2489 58788040 58787966 4.500000e-19 106.0
23 TraesCS2D01G172400 chr5B 90.133 527 46 5 25 546 488011341 488011866 0.000000e+00 680.0
24 TraesCS2D01G172400 chr4A 88.820 483 45 8 22 498 321943722 321944201 4.740000e-163 584.0
25 TraesCS2D01G172400 chr3D 96.067 356 14 0 557 912 496186340 496185985 6.130000e-162 580.0
26 TraesCS2D01G172400 chr3D 75.448 892 195 19 1371 2250 577414624 577413745 2.370000e-111 412.0
27 TraesCS2D01G172400 chr3D 75.497 906 183 26 1363 2250 577410496 577409612 1.100000e-109 407.0
28 TraesCS2D01G172400 chr3D 73.690 916 204 27 1342 2232 577250146 577251049 4.100000e-84 322.0
29 TraesCS2D01G172400 chr1A 88.571 490 39 12 25 508 515880167 515880645 2.200000e-161 579.0
30 TraesCS2D01G172400 chr1A 86.387 191 13 9 533 722 515894288 515894466 2.590000e-46 196.0
31 TraesCS2D01G172400 chr4B 88.506 435 41 8 25 455 344008319 344007890 4.870000e-143 518.0
32 TraesCS2D01G172400 chr1D 90.601 383 26 6 348 729 381108835 381108462 1.770000e-137 499.0
33 TraesCS2D01G172400 chr1D 95.050 303 15 0 554 856 373070690 373070388 8.270000e-131 477.0
34 TraesCS2D01G172400 chr1D 96.045 177 5 2 553 729 376739952 376739778 1.500000e-73 287.0
35 TraesCS2D01G172400 chr1D 96.403 139 4 1 789 927 59013420 59013283 9.200000e-56 228.0
36 TraesCS2D01G172400 chr3B 76.805 914 184 18 1342 2241 770556920 770557819 3.820000e-134 488.0
37 TraesCS2D01G172400 chr7A 86.466 399 26 13 157 552 597480351 597479978 2.370000e-111 412.0
38 TraesCS2D01G172400 chr3A 74.090 934 210 23 1342 2253 712552989 712553912 4.040000e-94 355.0
39 TraesCS2D01G172400 chr3A 74.162 925 204 25 1342 2250 712726819 712725914 5.230000e-93 351.0
40 TraesCS2D01G172400 chr3A 74.050 921 190 40 1342 2233 712545482 712546382 6.820000e-87 331.0
41 TraesCS2D01G172400 chr5D 93.960 149 9 0 779 927 496563261 496563409 3.310000e-55 226.0
42 TraesCS2D01G172400 chr5D 91.026 78 5 2 2405 2481 526139161 526139237 1.620000e-18 104.0
43 TraesCS2D01G172400 chr5D 86.364 88 12 0 2415 2502 564544835 564544922 2.710000e-16 97.1
44 TraesCS2D01G172400 chr4D 93.197 147 10 0 779 925 335176212 335176358 1.990000e-52 217.0
45 TraesCS2D01G172400 chr4D 94.444 72 4 0 2410 2481 494042479 494042408 9.670000e-21 111.0
46 TraesCS2D01G172400 chr4D 94.118 68 4 0 2414 2481 503153948 503153881 1.620000e-18 104.0
47 TraesCS2D01G172400 chrUn 92.857 70 3 1 2411 2480 2713889 2713956 2.090000e-17 100.0
48 TraesCS2D01G172400 chr6D 90.667 75 6 1 2415 2488 808308 808234 7.520000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G172400 chr2D 116510798 116514092 3294 False 6085.0 6085 100.0000 1 3295 1 chr2D.!!$F2 3294
1 TraesCS2D01G172400 chr2D 116490477 116491630 1153 False 689.5 1247 89.9540 1065 2270 2 chr2D.!!$F3 1205
2 TraesCS2D01G172400 chr2D 79334351 79335552 1201 True 605.5 636 91.9045 25 925 2 chr2D.!!$R1 900
3 TraesCS2D01G172400 chr2A 117745217 117747325 2108 False 1138.5 1338 86.6430 1065 3293 2 chr2A.!!$F2 2228
4 TraesCS2D01G172400 chr2B 166664212 166665189 977 False 1310.0 1310 90.8080 1284 2270 1 chr2B.!!$F2 986
5 TraesCS2D01G172400 chr2B 166669832 166670681 849 False 1070.0 1070 88.9860 925 1838 1 chr2B.!!$F3 913
6 TraesCS2D01G172400 chr2B 166742948 166744296 1348 False 795.5 857 88.3465 1834 3292 2 chr2B.!!$F4 1458
7 TraesCS2D01G172400 chr6A 575552995 575553676 681 False 832.0 832 88.6360 25 722 1 chr6A.!!$F1 697
8 TraesCS2D01G172400 chr7D 632844813 632846193 1380 True 693.0 830 94.6215 25 925 2 chr7D.!!$R4 900
9 TraesCS2D01G172400 chr5B 488011341 488011866 525 False 680.0 680 90.1330 25 546 1 chr5B.!!$F1 521
10 TraesCS2D01G172400 chr3D 577409612 577414624 5012 True 409.5 412 75.4725 1363 2250 2 chr3D.!!$R2 887
11 TraesCS2D01G172400 chr3D 577250146 577251049 903 False 322.0 322 73.6900 1342 2232 1 chr3D.!!$F1 890
12 TraesCS2D01G172400 chr3B 770556920 770557819 899 False 488.0 488 76.8050 1342 2241 1 chr3B.!!$F1 899
13 TraesCS2D01G172400 chr3A 712552989 712553912 923 False 355.0 355 74.0900 1342 2253 1 chr3A.!!$F2 911
14 TraesCS2D01G172400 chr3A 712725914 712726819 905 True 351.0 351 74.1620 1342 2250 1 chr3A.!!$R1 908
15 TraesCS2D01G172400 chr3A 712545482 712546382 900 False 331.0 331 74.0500 1342 2233 1 chr3A.!!$F1 891

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
840 1632 0.325671 TGCCCCTGTTTTTCAACCCA 60.326 50.0 0.0 0.0 31.02 4.51 F
841 1633 0.833949 GCCCCTGTTTTTCAACCCAA 59.166 50.0 0.0 0.0 31.02 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2222 7210 0.034574 TAGGGTACACCGGCGACTTA 60.035 55.0 9.3 0.0 46.96 2.24 R
2562 7559 0.035739 GCCTAAAAGTGTCCGGTCCA 59.964 55.0 0.0 0.0 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.440247 CACCCCCGCCTGAAATCC 60.440 66.667 0.00 0.00 0.00 3.01
18 19 2.614013 ACCCCCGCCTGAAATCCT 60.614 61.111 0.00 0.00 0.00 3.24
19 20 2.124151 CCCCCGCCTGAAATCCTG 60.124 66.667 0.00 0.00 0.00 3.86
20 21 2.677228 CCCCGCCTGAAATCCTGT 59.323 61.111 0.00 0.00 0.00 4.00
21 22 1.632018 CCCCCGCCTGAAATCCTGTA 61.632 60.000 0.00 0.00 0.00 2.74
22 23 0.474184 CCCCGCCTGAAATCCTGTAT 59.526 55.000 0.00 0.00 0.00 2.29
23 24 1.697432 CCCCGCCTGAAATCCTGTATA 59.303 52.381 0.00 0.00 0.00 1.47
53 55 7.365384 GCATCTTTAGTAGTACCCTAAACCCTT 60.365 40.741 9.96 0.00 32.49 3.95
58 60 8.972662 TTAGTAGTACCCTAAACCCTTAAACT 57.027 34.615 0.00 0.00 0.00 2.66
61 63 7.736691 AGTAGTACCCTAAACCCTTAAACTCTT 59.263 37.037 0.00 0.00 0.00 2.85
134 139 1.005569 CCCCTAAACCCTCAAACCCTC 59.994 57.143 0.00 0.00 0.00 4.30
219 225 3.622826 CACTCGACCCCAACCCGT 61.623 66.667 0.00 0.00 0.00 5.28
840 1632 0.325671 TGCCCCTGTTTTTCAACCCA 60.326 50.000 0.00 0.00 31.02 4.51
841 1633 0.833949 GCCCCTGTTTTTCAACCCAA 59.166 50.000 0.00 0.00 31.02 4.12
884 1677 5.763204 CACTTCTCAACCCTTAAAACTGCTA 59.237 40.000 0.00 0.00 0.00 3.49
911 1704 2.623416 GTTTGAGGGTTTGAGGGTTCTG 59.377 50.000 0.00 0.00 0.00 3.02
916 1709 1.351350 GGGTTTGAGGGTTCTGCTAGT 59.649 52.381 0.00 0.00 0.00 2.57
917 1710 2.570302 GGGTTTGAGGGTTCTGCTAGTA 59.430 50.000 0.00 0.00 0.00 1.82
933 1726 4.923871 TGCTAGTAATGCTCTAAATAGCGC 59.076 41.667 0.00 0.00 45.85 5.92
974 1767 2.192861 CCACAGCTTGCAACGGGAA 61.193 57.895 0.00 0.00 0.00 3.97
1015 1810 3.251729 CACAGCACAGCTTTGAGTACATT 59.748 43.478 3.47 0.00 38.46 2.71
1016 1811 3.251729 ACAGCACAGCTTTGAGTACATTG 59.748 43.478 3.47 0.00 36.40 2.82
1017 1812 3.251729 CAGCACAGCTTTGAGTACATTGT 59.748 43.478 3.47 0.00 36.40 2.71
1018 1813 4.452114 CAGCACAGCTTTGAGTACATTGTA 59.548 41.667 3.47 0.00 36.40 2.41
1019 1814 4.452455 AGCACAGCTTTGAGTACATTGTAC 59.548 41.667 17.43 17.43 33.89 2.90
1020 1815 4.213270 GCACAGCTTTGAGTACATTGTACA 59.787 41.667 24.80 6.41 0.00 2.90
1022 1817 6.537566 CACAGCTTTGAGTACATTGTACATC 58.462 40.000 24.80 18.93 0.00 3.06
1023 1818 6.147656 CACAGCTTTGAGTACATTGTACATCA 59.852 38.462 24.80 20.71 0.00 3.07
1025 1820 7.017645 CAGCTTTGAGTACATTGTACATCAAC 58.982 38.462 25.08 19.32 38.97 3.18
1026 1821 6.149474 AGCTTTGAGTACATTGTACATCAACC 59.851 38.462 25.08 21.02 38.97 3.77
1027 1822 6.149474 GCTTTGAGTACATTGTACATCAACCT 59.851 38.462 25.08 10.18 38.97 3.50
1028 1823 7.433708 TTTGAGTACATTGTACATCAACCTG 57.566 36.000 25.08 0.00 38.97 4.00
1029 1824 6.109156 TGAGTACATTGTACATCAACCTGT 57.891 37.500 24.80 4.80 38.97 4.00
1030 1825 5.931724 TGAGTACATTGTACATCAACCTGTG 59.068 40.000 24.80 0.00 38.97 3.66
1031 1826 4.695455 AGTACATTGTACATCAACCTGTGC 59.305 41.667 24.80 0.00 38.97 4.57
1032 1827 2.483877 ACATTGTACATCAACCTGTGCG 59.516 45.455 0.00 0.00 38.97 5.34
1043 1838 2.343758 CTGTGCGGTGCTACCTGT 59.656 61.111 4.21 0.00 35.66 4.00
1046 1841 0.896479 TGTGCGGTGCTACCTGTAGA 60.896 55.000 8.48 0.00 35.66 2.59
1063 1858 1.970092 AGACCGTAGCTAGCTACCTG 58.030 55.000 37.22 31.29 44.30 4.00
1074 1869 3.381908 GCTAGCTACCTGAAGTAAGCTGA 59.618 47.826 7.70 0.00 36.62 4.26
1076 1871 4.664150 AGCTACCTGAAGTAAGCTGATC 57.336 45.455 0.00 0.00 35.46 2.92
1077 1872 3.067461 AGCTACCTGAAGTAAGCTGATCG 59.933 47.826 0.00 0.00 35.46 3.69
1078 1873 3.066900 GCTACCTGAAGTAAGCTGATCGA 59.933 47.826 0.00 0.00 0.00 3.59
1079 1874 4.261825 GCTACCTGAAGTAAGCTGATCGAT 60.262 45.833 0.00 0.00 0.00 3.59
1080 1875 4.314740 ACCTGAAGTAAGCTGATCGATC 57.685 45.455 18.72 18.72 0.00 3.69
1081 1876 3.243234 ACCTGAAGTAAGCTGATCGATCG 60.243 47.826 20.03 9.36 0.00 3.69
1082 1877 3.003793 CCTGAAGTAAGCTGATCGATCGA 59.996 47.826 21.86 21.86 0.00 3.59
1083 1878 4.216366 TGAAGTAAGCTGATCGATCGAG 57.784 45.455 23.84 17.72 0.00 4.04
1084 1879 2.697431 AGTAAGCTGATCGATCGAGC 57.303 50.000 27.91 27.91 33.85 5.03
1085 1880 2.226330 AGTAAGCTGATCGATCGAGCT 58.774 47.619 30.24 30.24 40.46 4.09
1086 1881 2.031245 AGTAAGCTGATCGATCGAGCTG 60.031 50.000 33.36 29.80 39.48 4.24
1087 1882 3.536497 GCTGATCGATCGAGCTGC 58.464 61.111 37.02 37.02 45.06 5.25
1088 1883 2.363555 GCTGATCGATCGAGCTGCG 61.364 63.158 37.02 24.36 43.21 5.18
1089 1884 2.353956 TGATCGATCGAGCTGCGC 60.354 61.111 30.86 12.89 40.61 6.09
1191 1989 7.666804 TGATAATACTATGAACCATGCAAGCAT 59.333 33.333 0.86 0.86 37.08 3.79
1205 2003 2.803670 GCATGCAACAGCACGCAG 60.804 61.111 14.21 0.00 45.90 5.18
1265 2084 6.565234 AGTTCACCGAGTAGTATTGATTCTG 58.435 40.000 0.00 0.00 0.00 3.02
1698 6674 3.142838 CCAAGGCCGGCATCAAGG 61.143 66.667 30.85 20.20 0.00 3.61
1699 6675 3.142838 CAAGGCCGGCATCAAGGG 61.143 66.667 30.85 5.49 0.00 3.95
1703 6679 3.599704 GCCGGCATCAAGGGCATC 61.600 66.667 24.80 0.00 46.13 3.91
1704 6680 2.124193 CCGGCATCAAGGGCATCA 60.124 61.111 0.00 0.00 0.00 3.07
1889 6868 4.752101 CAGAAGAACATCGACCTCAACTTT 59.248 41.667 0.00 0.00 0.00 2.66
2087 7072 3.037249 GCGCGGACGTACAACCAA 61.037 61.111 8.83 0.00 42.83 3.67
2222 7210 2.230130 TTGGGCTTTTCAATCCGGAT 57.770 45.000 12.38 12.38 0.00 4.18
2332 7329 9.853921 GAAAAGTGCAATATTTCTTTTCAGTTG 57.146 29.630 25.52 3.83 46.79 3.16
2333 7330 9.598517 AAAAGTGCAATATTTCTTTTCAGTTGA 57.401 25.926 12.84 0.00 35.96 3.18
2334 7331 9.598517 AAAGTGCAATATTTCTTTTCAGTTGAA 57.401 25.926 0.00 0.00 0.00 2.69
2430 7427 9.458727 TTGAAATAGTATATAGTACTCCCTCCG 57.541 37.037 0.00 0.00 0.00 4.63
2431 7428 8.609483 TGAAATAGTATATAGTACTCCCTCCGT 58.391 37.037 0.00 0.00 0.00 4.69
2432 7429 9.108284 GAAATAGTATATAGTACTCCCTCCGTC 57.892 40.741 0.00 0.00 0.00 4.79
2433 7430 7.993349 ATAGTATATAGTACTCCCTCCGTCT 57.007 40.000 0.00 0.00 0.00 4.18
2434 7431 6.298441 AGTATATAGTACTCCCTCCGTCTC 57.702 45.833 0.00 0.00 0.00 3.36
2435 7432 5.784390 AGTATATAGTACTCCCTCCGTCTCA 59.216 44.000 0.00 0.00 0.00 3.27
2436 7433 3.947612 ATAGTACTCCCTCCGTCTCAA 57.052 47.619 0.00 0.00 0.00 3.02
2437 7434 2.599408 AGTACTCCCTCCGTCTCAAA 57.401 50.000 0.00 0.00 0.00 2.69
2438 7435 2.885616 AGTACTCCCTCCGTCTCAAAA 58.114 47.619 0.00 0.00 0.00 2.44
2439 7436 3.442076 AGTACTCCCTCCGTCTCAAAAT 58.558 45.455 0.00 0.00 0.00 1.82
2440 7437 4.607239 AGTACTCCCTCCGTCTCAAAATA 58.393 43.478 0.00 0.00 0.00 1.40
2441 7438 5.021458 AGTACTCCCTCCGTCTCAAAATAA 58.979 41.667 0.00 0.00 0.00 1.40
2442 7439 4.473477 ACTCCCTCCGTCTCAAAATAAG 57.527 45.455 0.00 0.00 0.00 1.73
2443 7440 3.838903 ACTCCCTCCGTCTCAAAATAAGT 59.161 43.478 0.00 0.00 0.00 2.24
2444 7441 4.184629 CTCCCTCCGTCTCAAAATAAGTG 58.815 47.826 0.00 0.00 0.00 3.16
2445 7442 3.581332 TCCCTCCGTCTCAAAATAAGTGT 59.419 43.478 0.00 0.00 0.00 3.55
2446 7443 3.933332 CCCTCCGTCTCAAAATAAGTGTC 59.067 47.826 0.00 0.00 0.00 3.67
2447 7444 4.322801 CCCTCCGTCTCAAAATAAGTGTCT 60.323 45.833 0.00 0.00 0.00 3.41
2448 7445 4.865365 CCTCCGTCTCAAAATAAGTGTCTC 59.135 45.833 0.00 0.00 0.00 3.36
2449 7446 5.462530 TCCGTCTCAAAATAAGTGTCTCA 57.537 39.130 0.00 0.00 0.00 3.27
2450 7447 5.849510 TCCGTCTCAAAATAAGTGTCTCAA 58.150 37.500 0.00 0.00 0.00 3.02
2451 7448 5.694910 TCCGTCTCAAAATAAGTGTCTCAAC 59.305 40.000 0.00 0.00 0.00 3.18
2452 7449 5.696724 CCGTCTCAAAATAAGTGTCTCAACT 59.303 40.000 0.00 0.00 0.00 3.16
2453 7450 6.202954 CCGTCTCAAAATAAGTGTCTCAACTT 59.797 38.462 0.00 0.00 42.89 2.66
2454 7451 7.254795 CCGTCTCAAAATAAGTGTCTCAACTTT 60.255 37.037 0.00 0.00 40.77 2.66
2455 7452 8.761497 CGTCTCAAAATAAGTGTCTCAACTTTA 58.239 33.333 0.00 0.00 40.77 1.85
2486 7483 8.652810 ACTTTAATACGAAGTTGTACAACACT 57.347 30.769 33.93 23.08 37.78 3.55
2487 7484 9.101655 ACTTTAATACGAAGTTGTACAACACTT 57.898 29.630 33.93 23.41 37.78 3.16
2488 7485 9.365311 CTTTAATACGAAGTTGTACAACACTTG 57.635 33.333 33.93 25.84 37.78 3.16
2489 7486 6.913873 AATACGAAGTTGTACAACACTTGT 57.086 33.333 33.93 28.94 37.78 3.16
2490 7487 6.913873 ATACGAAGTTGTACAACACTTGTT 57.086 33.333 33.93 21.78 37.78 2.83
2491 7488 5.616488 ACGAAGTTGTACAACACTTGTTT 57.384 34.783 33.93 21.14 37.78 2.83
2492 7489 5.624292 ACGAAGTTGTACAACACTTGTTTC 58.376 37.500 33.93 25.61 37.78 2.78
2493 7490 4.721977 CGAAGTTGTACAACACTTGTTTCG 59.278 41.667 33.93 30.78 42.22 3.46
2494 7491 4.609691 AGTTGTACAACACTTGTTTCGG 57.390 40.909 33.93 0.00 42.22 4.30
2495 7492 3.375922 AGTTGTACAACACTTGTTTCGGG 59.624 43.478 33.93 0.00 42.22 5.14
2496 7493 3.263489 TGTACAACACTTGTTTCGGGA 57.737 42.857 0.00 0.00 42.22 5.14
2497 7494 2.937799 TGTACAACACTTGTTTCGGGAC 59.062 45.455 0.00 0.00 42.22 4.46
2498 7495 3.817960 CAACACTTGTTTCGGGACG 57.182 52.632 0.00 0.00 45.88 4.79
2499 7496 0.306533 CAACACTTGTTTCGGGACGG 59.693 55.000 0.00 0.00 44.97 4.79
2500 7497 2.075365 CAACACTTGTTTCGGGACGGA 61.075 52.381 0.00 0.00 44.97 4.69
2501 7498 3.937625 CAACACTTGTTTCGGGACGGAG 61.938 54.545 0.00 0.00 44.56 4.63
2550 7547 1.068610 CAATGCGAATCACCAAACCGT 60.069 47.619 0.00 0.00 0.00 4.83
2559 7556 5.106869 CGAATCACCAAACCGTCTTCAAATA 60.107 40.000 0.00 0.00 0.00 1.40
2562 7559 6.642707 TCACCAAACCGTCTTCAAATATTT 57.357 33.333 0.00 0.00 0.00 1.40
2622 7619 1.457831 GGTCCGGCCCACTCTAGAT 60.458 63.158 0.00 0.00 0.00 1.98
2631 7628 3.135530 GGCCCACTCTAGATGTCTGAAAT 59.864 47.826 0.00 0.00 0.00 2.17
2640 7637 4.779993 AGATGTCTGAAATCCCCTAACC 57.220 45.455 4.18 0.00 0.00 2.85
2662 7659 2.038952 TGGACACAAATCTGAGGGAGTG 59.961 50.000 0.00 0.00 0.00 3.51
2678 7675 0.250640 AGTGTGGACGTCCGACTAGT 60.251 55.000 28.74 16.30 39.43 2.57
2684 7681 2.015736 GACGTCCGACTAGTCCACTA 57.984 55.000 17.23 0.00 0.00 2.74
2697 7694 6.021030 ACTAGTCCACTATTAGTTGGACCAA 58.979 40.000 25.60 18.79 42.31 3.67
2717 7714 0.673437 GTGTTCCCACAACCCACATG 59.327 55.000 0.00 0.00 41.44 3.21
2725 7722 0.467290 ACAACCCACATGTTCGCCTT 60.467 50.000 0.00 0.00 0.00 4.35
2749 7746 3.609103 TTTTTCTCTCGCTTTGTCTGC 57.391 42.857 0.00 0.00 0.00 4.26
2750 7747 1.512926 TTTCTCTCGCTTTGTCTGCC 58.487 50.000 0.00 0.00 0.00 4.85
2751 7748 0.681733 TTCTCTCGCTTTGTCTGCCT 59.318 50.000 0.00 0.00 0.00 4.75
2752 7749 0.244994 TCTCTCGCTTTGTCTGCCTC 59.755 55.000 0.00 0.00 0.00 4.70
2753 7750 0.037882 CTCTCGCTTTGTCTGCCTCA 60.038 55.000 0.00 0.00 0.00 3.86
2754 7751 0.392706 TCTCGCTTTGTCTGCCTCAA 59.607 50.000 0.00 0.00 0.00 3.02
2770 7779 3.512680 CCTCAATGTCAGTCGTAACTCC 58.487 50.000 0.00 0.00 31.71 3.85
2787 7796 1.950909 CTCCTAGTCCGGATGTGAGAC 59.049 57.143 7.81 0.00 31.43 3.36
2807 7818 4.778143 GGTTGGATGTCCGGCGCT 62.778 66.667 7.64 0.00 39.43 5.92
2808 7819 3.195698 GTTGGATGTCCGGCGCTC 61.196 66.667 7.64 0.00 39.43 5.03
2817 7828 1.897137 TCCGGCGCTCGATGTATCT 60.897 57.895 17.96 0.00 42.43 1.98
2820 7831 1.300156 GGCGCTCGATGTATCTGCA 60.300 57.895 7.64 0.00 0.00 4.41
2852 7863 2.870175 ACGGAAATTTGGTGATCCACA 58.130 42.857 0.00 0.00 44.22 4.17
2899 7910 6.348704 GCTATAGAGGCCTAAGTCGTTTCTAG 60.349 46.154 4.42 0.00 0.00 2.43
2918 7929 4.340019 CACGCAATGTGCCGCCAA 62.340 61.111 0.00 0.00 42.70 4.52
2919 7930 4.341502 ACGCAATGTGCCGCCAAC 62.342 61.111 0.00 0.00 41.12 3.77
2960 7971 4.335416 TGAGATTCACACCTCCATTTTCC 58.665 43.478 0.00 0.00 0.00 3.13
2970 7981 3.448660 ACCTCCATTTTCCAGCTTAATGC 59.551 43.478 0.00 0.00 43.29 3.56
3024 8035 8.006298 TGACATTTCAAGTAAGTTTTGATGGT 57.994 30.769 0.00 0.00 34.76 3.55
3236 8251 5.016831 ACCCATTCTGGAACCATTTTAGAC 58.983 41.667 0.00 0.00 40.96 2.59
3270 8286 8.658609 TGTAAACACATATAAGACGTTTTAGGC 58.341 33.333 4.75 0.00 32.42 3.93
3278 8294 6.732531 ATAAGACGTTTTAGGCCACTAAAC 57.267 37.500 5.01 11.16 46.01 2.01
3293 8309 4.738252 CCACTAAACGGTTTCAAAGAAAGC 59.262 41.667 9.78 10.67 0.00 3.51
3294 8310 5.449999 CCACTAAACGGTTTCAAAGAAAGCT 60.450 40.000 9.78 4.35 0.00 3.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.440247 GGATTTCAGGCGGGGGTG 60.440 66.667 0.00 0.00 0.00 4.61
2 3 1.632018 TACAGGATTTCAGGCGGGGG 61.632 60.000 0.00 0.00 0.00 5.40
3 4 0.474184 ATACAGGATTTCAGGCGGGG 59.526 55.000 0.00 0.00 0.00 5.73
4 5 3.071023 TCTTATACAGGATTTCAGGCGGG 59.929 47.826 0.00 0.00 0.00 6.13
5 6 4.310769 CTCTTATACAGGATTTCAGGCGG 58.689 47.826 0.00 0.00 0.00 6.13
6 7 3.743396 GCTCTTATACAGGATTTCAGGCG 59.257 47.826 0.00 0.00 0.00 5.52
7 8 4.708177 TGCTCTTATACAGGATTTCAGGC 58.292 43.478 0.00 0.00 0.00 4.85
8 9 6.767456 AGATGCTCTTATACAGGATTTCAGG 58.233 40.000 0.00 0.00 0.00 3.86
9 10 8.674263 AAAGATGCTCTTATACAGGATTTCAG 57.326 34.615 0.00 0.00 35.27 3.02
10 11 9.770097 CTAAAGATGCTCTTATACAGGATTTCA 57.230 33.333 0.00 0.00 35.27 2.69
11 12 9.771534 ACTAAAGATGCTCTTATACAGGATTTC 57.228 33.333 0.00 0.00 35.27 2.17
18 19 9.075678 GGGTACTACTAAAGATGCTCTTATACA 57.924 37.037 0.00 0.00 35.27 2.29
19 20 9.299465 AGGGTACTACTAAAGATGCTCTTATAC 57.701 37.037 0.00 0.00 35.27 1.47
21 22 9.878737 TTAGGGTACTACTAAAGATGCTCTTAT 57.121 33.333 7.73 0.00 35.27 1.73
22 23 9.705103 TTTAGGGTACTACTAAAGATGCTCTTA 57.295 33.333 14.90 0.00 35.27 2.10
23 24 8.476447 GTTTAGGGTACTACTAAAGATGCTCTT 58.524 37.037 17.62 0.00 40.08 2.85
33 34 8.972662 AGTTTAAGGGTTTAGGGTACTACTAA 57.027 34.615 6.51 6.51 0.00 2.24
219 225 1.310933 GCGACGTGGGAAGAGGAGTA 61.311 60.000 0.00 0.00 0.00 2.59
255 264 4.760220 AGGCGGGAGGTTGGGGAT 62.760 66.667 0.00 0.00 0.00 3.85
578 1370 4.360405 GTCAATGGTGGGCGGGGT 62.360 66.667 0.00 0.00 0.00 4.95
754 1546 0.322456 CTCCACCTTGATTTCGGCCA 60.322 55.000 2.24 0.00 0.00 5.36
846 1638 6.238759 GGTTGAGAAGTGCTAGTTTTTGACAT 60.239 38.462 0.00 0.00 0.00 3.06
858 1650 4.580580 CAGTTTTAAGGGTTGAGAAGTGCT 59.419 41.667 0.00 0.00 0.00 4.40
862 1655 8.561738 TTATAGCAGTTTTAAGGGTTGAGAAG 57.438 34.615 0.00 0.00 0.00 2.85
884 1677 3.245622 CCCTCAAACCCTCAAACCCTTAT 60.246 47.826 0.00 0.00 0.00 1.73
894 1687 0.402121 AGCAGAACCCTCAAACCCTC 59.598 55.000 0.00 0.00 0.00 4.30
911 1704 5.443142 GCGCTATTTAGAGCATTACTAGC 57.557 43.478 0.00 0.00 46.42 3.42
1015 1810 3.225272 CCGCACAGGTTGATGTACA 57.775 52.632 0.00 0.00 34.51 2.90
1025 1820 1.884075 TACAGGTAGCACCGCACAGG 61.884 60.000 0.00 0.00 44.90 4.00
1026 1821 0.458543 CTACAGGTAGCACCGCACAG 60.459 60.000 0.00 0.00 44.90 3.66
1027 1822 0.896479 TCTACAGGTAGCACCGCACA 60.896 55.000 1.54 0.00 44.90 4.57
1028 1823 0.458025 GTCTACAGGTAGCACCGCAC 60.458 60.000 1.54 0.00 44.90 5.34
1029 1824 1.601419 GGTCTACAGGTAGCACCGCA 61.601 60.000 1.54 0.00 44.90 5.69
1030 1825 1.141234 GGTCTACAGGTAGCACCGC 59.859 63.158 1.54 0.00 44.90 5.68
1031 1826 1.432251 CGGTCTACAGGTAGCACCG 59.568 63.158 23.13 23.13 44.90 4.94
1032 1827 1.674962 CTACGGTCTACAGGTAGCACC 59.325 57.143 13.52 13.52 38.99 5.01
1038 1833 1.212441 AGCTAGCTACGGTCTACAGGT 59.788 52.381 17.69 0.00 0.00 4.00
1063 1858 2.977169 GCTCGATCGATCAGCTTACTTC 59.023 50.000 27.88 9.79 32.20 3.01
1089 1884 3.190849 CTGCAGTGCCATCGTCGG 61.191 66.667 13.72 0.00 0.00 4.79
1204 2002 9.760077 ACGTAGCAATTATATTTACTTAGCACT 57.240 29.630 0.00 0.00 0.00 4.40
1221 2019 8.440833 GTGAACTCAAGTATTTTACGTAGCAAT 58.559 33.333 0.00 1.54 0.00 3.56
1244 2063 5.650703 TCACAGAATCAATACTACTCGGTGA 59.349 40.000 0.00 0.00 38.38 4.02
1265 2084 5.107065 GCAGTACAACCTCACAATTAGTCAC 60.107 44.000 0.00 0.00 0.00 3.67
1336 2156 3.762992 CGTAGCACACGCCACACG 61.763 66.667 0.00 0.00 45.03 4.49
1696 6672 0.606401 CGTTGACACCTTGATGCCCT 60.606 55.000 0.00 0.00 0.00 5.19
1697 6673 1.586154 CCGTTGACACCTTGATGCCC 61.586 60.000 0.00 0.00 0.00 5.36
1698 6674 1.875963 CCGTTGACACCTTGATGCC 59.124 57.895 0.00 0.00 0.00 4.40
1699 6675 1.210155 GCCGTTGACACCTTGATGC 59.790 57.895 0.00 0.00 0.00 3.91
1700 6676 1.875963 GGCCGTTGACACCTTGATG 59.124 57.895 0.00 0.00 0.00 3.07
1701 6677 1.671054 CGGCCGTTGACACCTTGAT 60.671 57.895 19.50 0.00 0.00 2.57
1702 6678 2.280524 CGGCCGTTGACACCTTGA 60.281 61.111 19.50 0.00 0.00 3.02
1703 6679 2.590575 ACGGCCGTTGACACCTTG 60.591 61.111 28.70 0.00 0.00 3.61
1704 6680 2.280592 GACGGCCGTTGACACCTT 60.281 61.111 34.65 5.28 0.00 3.50
1889 6868 3.393970 CTCGGCTGGAAGAGGGCA 61.394 66.667 0.00 0.00 34.07 5.36
2087 7072 1.508632 CGACGTGGTTGATGAGGTTT 58.491 50.000 0.00 0.00 0.00 3.27
2210 7195 2.557317 GGCGACTTATCCGGATTGAAA 58.443 47.619 24.71 10.25 0.00 2.69
2222 7210 0.034574 TAGGGTACACCGGCGACTTA 60.035 55.000 9.30 0.00 46.96 2.24
2309 7306 9.598517 TTTCAACTGAAAAGAAATATTGCACTT 57.401 25.926 2.38 0.00 40.68 3.16
2310 7307 9.252962 CTTTCAACTGAAAAGAAATATTGCACT 57.747 29.630 6.36 0.00 42.72 4.40
2311 7308 9.034544 ACTTTCAACTGAAAAGAAATATTGCAC 57.965 29.630 6.36 0.00 42.72 4.57
2312 7309 9.033481 CACTTTCAACTGAAAAGAAATATTGCA 57.967 29.630 6.36 0.00 42.72 4.08
2313 7310 8.006027 GCACTTTCAACTGAAAAGAAATATTGC 58.994 33.333 6.36 0.00 42.72 3.56
2314 7311 9.033481 TGCACTTTCAACTGAAAAGAAATATTG 57.967 29.630 6.36 0.00 42.72 1.90
2315 7312 9.598517 TTGCACTTTCAACTGAAAAGAAATATT 57.401 25.926 6.36 0.00 42.72 1.28
2316 7313 9.768662 ATTGCACTTTCAACTGAAAAGAAATAT 57.231 25.926 6.36 0.00 42.72 1.28
2318 7315 9.768662 ATATTGCACTTTCAACTGAAAAGAAAT 57.231 25.926 6.36 9.77 42.72 2.17
2319 7316 9.598517 AATATTGCACTTTCAACTGAAAAGAAA 57.401 25.926 6.36 3.95 42.72 2.52
2326 7323 9.791820 CATGAATAATATTGCACTTTCAACTGA 57.208 29.630 0.00 0.00 0.00 3.41
2327 7324 8.537223 GCATGAATAATATTGCACTTTCAACTG 58.463 33.333 0.00 0.00 35.22 3.16
2328 7325 8.472413 AGCATGAATAATATTGCACTTTCAACT 58.528 29.630 0.00 0.98 37.56 3.16
2329 7326 8.638685 AGCATGAATAATATTGCACTTTCAAC 57.361 30.769 0.00 0.00 37.56 3.18
2333 7330 9.199982 GCATTAGCATGAATAATATTGCACTTT 57.800 29.630 0.00 0.00 41.58 2.66
2334 7331 8.582437 AGCATTAGCATGAATAATATTGCACTT 58.418 29.630 0.00 0.00 45.49 3.16
2415 7412 5.378230 TTTGAGACGGAGGGAGTACTATA 57.622 43.478 0.00 0.00 0.00 1.31
2418 7415 2.599408 TTTGAGACGGAGGGAGTACT 57.401 50.000 0.00 0.00 0.00 2.73
2422 7419 4.184629 CACTTATTTTGAGACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
2423 7420 3.581332 ACACTTATTTTGAGACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
2424 7421 3.933332 GACACTTATTTTGAGACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
2425 7422 4.822026 AGACACTTATTTTGAGACGGAGG 58.178 43.478 0.00 0.00 0.00 4.30
2426 7423 5.470368 TGAGACACTTATTTTGAGACGGAG 58.530 41.667 0.00 0.00 0.00 4.63
2427 7424 5.462530 TGAGACACTTATTTTGAGACGGA 57.537 39.130 0.00 0.00 0.00 4.69
2428 7425 5.696724 AGTTGAGACACTTATTTTGAGACGG 59.303 40.000 0.00 0.00 0.00 4.79
2429 7426 6.771188 AGTTGAGACACTTATTTTGAGACG 57.229 37.500 0.00 0.00 0.00 4.18
2460 7457 9.101655 AGTGTTGTACAACTTCGTATTAAAGTT 57.898 29.630 32.58 9.06 45.41 2.66
2461 7458 8.652810 AGTGTTGTACAACTTCGTATTAAAGT 57.347 30.769 32.58 13.34 41.67 2.66
2462 7459 9.365311 CAAGTGTTGTACAACTTCGTATTAAAG 57.635 33.333 32.58 11.98 41.67 1.85
2463 7460 8.881743 ACAAGTGTTGTACAACTTCGTATTAAA 58.118 29.630 32.58 11.30 43.27 1.52
2464 7461 8.422973 ACAAGTGTTGTACAACTTCGTATTAA 57.577 30.769 32.58 11.97 43.27 1.40
2465 7462 8.422973 AACAAGTGTTGTACAACTTCGTATTA 57.577 30.769 32.58 12.63 44.59 0.98
2466 7463 6.913873 ACAAGTGTTGTACAACTTCGTATT 57.086 33.333 32.58 17.81 43.27 1.89
2467 7464 6.913873 AACAAGTGTTGTACAACTTCGTAT 57.086 33.333 32.58 16.38 44.59 3.06
2468 7465 6.454054 CGAAACAAGTGTTGTACAACTTCGTA 60.454 38.462 30.53 16.67 44.59 3.43
2469 7466 5.616488 AAACAAGTGTTGTACAACTTCGT 57.384 34.783 32.58 22.54 44.59 3.85
2470 7467 4.721977 CGAAACAAGTGTTGTACAACTTCG 59.278 41.667 32.58 30.22 44.59 3.79
2471 7468 5.025826 CCGAAACAAGTGTTGTACAACTTC 58.974 41.667 32.58 25.06 44.59 3.01
2472 7469 4.142556 CCCGAAACAAGTGTTGTACAACTT 60.143 41.667 32.58 20.61 44.59 2.66
2473 7470 3.375922 CCCGAAACAAGTGTTGTACAACT 59.624 43.478 32.58 16.15 44.59 3.16
2474 7471 3.374678 TCCCGAAACAAGTGTTGTACAAC 59.625 43.478 28.13 28.13 44.59 3.32
2475 7472 3.374678 GTCCCGAAACAAGTGTTGTACAA 59.625 43.478 3.59 3.59 44.59 2.41
2476 7473 2.937799 GTCCCGAAACAAGTGTTGTACA 59.062 45.455 0.00 0.00 44.59 2.90
2477 7474 2.033492 CGTCCCGAAACAAGTGTTGTAC 60.033 50.000 0.00 0.00 44.59 2.90
2478 7475 2.203401 CGTCCCGAAACAAGTGTTGTA 58.797 47.619 0.00 0.00 44.59 2.41
2480 7477 0.306533 CCGTCCCGAAACAAGTGTTG 59.693 55.000 0.00 0.00 38.44 3.33
2481 7478 0.178533 TCCGTCCCGAAACAAGTGTT 59.821 50.000 0.00 0.00 40.50 3.32
2482 7479 0.249741 CTCCGTCCCGAAACAAGTGT 60.250 55.000 0.00 0.00 0.00 3.55
2483 7480 0.949105 CCTCCGTCCCGAAACAAGTG 60.949 60.000 0.00 0.00 0.00 3.16
2484 7481 1.370064 CCTCCGTCCCGAAACAAGT 59.630 57.895 0.00 0.00 0.00 3.16
2485 7482 2.033194 GCCTCCGTCCCGAAACAAG 61.033 63.158 0.00 0.00 0.00 3.16
2486 7483 2.031465 GCCTCCGTCCCGAAACAA 59.969 61.111 0.00 0.00 0.00 2.83
2487 7484 3.235481 TGCCTCCGTCCCGAAACA 61.235 61.111 0.00 0.00 0.00 2.83
2488 7485 2.741211 GTGCCTCCGTCCCGAAAC 60.741 66.667 0.00 0.00 0.00 2.78
2489 7486 2.515996 GATGTGCCTCCGTCCCGAAA 62.516 60.000 0.00 0.00 0.00 3.46
2490 7487 3.000819 ATGTGCCTCCGTCCCGAA 61.001 61.111 0.00 0.00 0.00 4.30
2491 7488 3.458163 GATGTGCCTCCGTCCCGA 61.458 66.667 0.00 0.00 0.00 5.14
2492 7489 3.309436 TTGATGTGCCTCCGTCCCG 62.309 63.158 0.00 0.00 0.00 5.14
2493 7490 1.450312 CTTGATGTGCCTCCGTCCC 60.450 63.158 0.00 0.00 0.00 4.46
2494 7491 2.109126 GCTTGATGTGCCTCCGTCC 61.109 63.158 0.00 0.00 0.00 4.79
2495 7492 1.375908 TGCTTGATGTGCCTCCGTC 60.376 57.895 0.00 0.00 0.00 4.79
2496 7493 1.672356 GTGCTTGATGTGCCTCCGT 60.672 57.895 0.00 0.00 0.00 4.69
2497 7494 0.108186 TAGTGCTTGATGTGCCTCCG 60.108 55.000 0.00 0.00 0.00 4.63
2498 7495 1.945394 CATAGTGCTTGATGTGCCTCC 59.055 52.381 0.00 0.00 0.00 4.30
2499 7496 2.611292 GTCATAGTGCTTGATGTGCCTC 59.389 50.000 0.00 0.00 0.00 4.70
2500 7497 2.026915 TGTCATAGTGCTTGATGTGCCT 60.027 45.455 0.00 0.00 0.00 4.75
2501 7498 2.353889 CTGTCATAGTGCTTGATGTGCC 59.646 50.000 0.00 0.00 0.00 5.01
2502 7499 2.353889 CCTGTCATAGTGCTTGATGTGC 59.646 50.000 0.00 0.00 0.00 4.57
2550 7547 4.698304 GTGTCCGGTCCAAATATTTGAAGA 59.302 41.667 26.32 14.67 40.55 2.87
2559 7556 3.418047 CCTAAAAGTGTCCGGTCCAAAT 58.582 45.455 0.00 0.00 0.00 2.32
2562 7559 0.035739 GCCTAAAAGTGTCCGGTCCA 59.964 55.000 0.00 0.00 0.00 4.02
2614 7611 4.889780 AGGGGATTTCAGACATCTAGAGT 58.110 43.478 0.00 0.00 0.00 3.24
2615 7612 6.239458 GGTTAGGGGATTTCAGACATCTAGAG 60.239 46.154 0.00 0.00 0.00 2.43
2622 7619 2.576191 CCAGGTTAGGGGATTTCAGACA 59.424 50.000 0.00 0.00 0.00 3.41
2631 7628 1.822425 TTTGTGTCCAGGTTAGGGGA 58.178 50.000 0.00 0.00 0.00 4.81
2640 7637 2.304180 ACTCCCTCAGATTTGTGTCCAG 59.696 50.000 0.00 0.00 0.00 3.86
2662 7659 1.799383 GGACTAGTCGGACGTCCAC 59.201 63.158 32.80 26.74 45.08 4.02
2678 7675 4.595781 ACACTTGGTCCAACTAATAGTGGA 59.404 41.667 18.87 2.32 0.00 4.02
2737 7734 1.159285 CATTGAGGCAGACAAAGCGA 58.841 50.000 0.00 0.00 0.00 4.93
2738 7735 0.877071 ACATTGAGGCAGACAAAGCG 59.123 50.000 0.00 0.00 0.00 4.68
2739 7736 1.881973 TGACATTGAGGCAGACAAAGC 59.118 47.619 0.00 0.00 0.00 3.51
2747 7744 2.299013 AGTTACGACTGACATTGAGGCA 59.701 45.455 0.00 0.00 33.99 4.75
2748 7745 2.924290 GAGTTACGACTGACATTGAGGC 59.076 50.000 0.00 0.00 35.88 4.70
2749 7746 3.193691 AGGAGTTACGACTGACATTGAGG 59.806 47.826 0.00 0.00 35.88 3.86
2750 7747 4.442375 AGGAGTTACGACTGACATTGAG 57.558 45.455 0.00 0.00 35.88 3.02
2751 7748 5.008331 ACTAGGAGTTACGACTGACATTGA 58.992 41.667 0.00 0.00 35.88 2.57
2752 7749 5.312120 ACTAGGAGTTACGACTGACATTG 57.688 43.478 0.00 0.00 35.88 2.82
2753 7750 4.398673 GGACTAGGAGTTACGACTGACATT 59.601 45.833 0.00 0.00 35.88 2.71
2754 7751 3.946558 GGACTAGGAGTTACGACTGACAT 59.053 47.826 0.00 0.00 35.88 3.06
2770 7779 1.064208 CGTGTCTCACATCCGGACTAG 59.936 57.143 6.12 1.83 33.40 2.57
2787 7796 3.124921 GCCGGACATCCAACCGTG 61.125 66.667 5.05 0.00 46.53 4.94
2820 7831 5.994668 ACCAAATTTCCGTATGCAAATGTTT 59.005 32.000 0.00 0.00 0.00 2.83
2873 7884 3.512219 ACGACTTAGGCCTCTATAGCT 57.488 47.619 9.68 0.00 0.00 3.32
2877 7888 4.828387 CCTAGAAACGACTTAGGCCTCTAT 59.172 45.833 9.68 0.00 0.00 1.98
2918 7929 2.511600 GCAACTATGAGCGGCGGT 60.512 61.111 13.08 13.08 0.00 5.68
2919 7930 1.369091 AAAGCAACTATGAGCGGCGG 61.369 55.000 9.78 0.00 35.48 6.13
3095 8108 6.054295 CCCAAAATGATTCTGAAACCACAAA 58.946 36.000 0.00 0.00 0.00 2.83
3236 8251 6.761714 GTCTTATATGTGTTTACAGAGGGGTG 59.238 42.308 0.00 0.00 40.79 4.61
3270 8286 4.738252 GCTTTCTTTGAAACCGTTTAGTGG 59.262 41.667 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.