Multiple sequence alignment - TraesCS2D01G171800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G171800 chr2D 100.000 6603 0 0 1 6603 115935333 115941935 0.000000e+00 12194.0
1 TraesCS2D01G171800 chr2D 75.115 655 135 23 2554 3195 635211242 635210603 1.400000e-71 281.0
2 TraesCS2D01G171800 chr2D 83.691 233 26 7 3198 3424 336965637 336965863 6.710000e-50 209.0
3 TraesCS2D01G171800 chr2D 92.754 69 0 1 5926 5989 635065750 635065818 1.960000e-15 95.3
4 TraesCS2D01G171800 chr2D 97.917 48 1 0 5879 5926 306161246 306161199 4.240000e-12 84.2
5 TraesCS2D01G171800 chr2B 95.369 3174 125 14 2722 5878 166462300 166465468 0.000000e+00 5027.0
6 TraesCS2D01G171800 chr2B 92.303 1767 100 9 967 2725 166429274 166431012 0.000000e+00 2477.0
7 TraesCS2D01G171800 chr2B 92.233 309 19 2 321 629 166426353 166426656 3.660000e-117 433.0
8 TraesCS2D01G171800 chr2B 88.754 329 35 2 1 329 166421059 166421385 1.030000e-107 401.0
9 TraesCS2D01G171800 chr2B 88.889 297 19 5 621 911 166428983 166429271 2.930000e-93 353.0
10 TraesCS2D01G171800 chr2B 96.891 193 5 1 6083 6275 166465469 166465660 8.260000e-84 322.0
11 TraesCS2D01G171800 chr2B 93.064 173 12 0 6430 6602 166465749 166465921 3.060000e-63 254.0
12 TraesCS2D01G171800 chr2B 84.332 217 21 8 3198 3408 404416880 404417089 4.040000e-47 200.0
13 TraesCS2D01G171800 chr2B 90.909 110 5 2 6301 6409 166465651 166465756 6.900000e-30 143.0
14 TraesCS2D01G171800 chr2B 97.917 48 1 0 5879 5926 357449297 357449250 4.240000e-12 84.2
15 TraesCS2D01G171800 chr2B 97.917 48 1 0 5879 5926 357564137 357564184 4.240000e-12 84.2
16 TraesCS2D01G171800 chr2B 100.000 30 0 0 6277 6306 166465635 166465664 1.000000e-03 56.5
17 TraesCS2D01G171800 chr2A 94.586 3103 121 21 2809 5878 117383958 117387046 0.000000e+00 4756.0
18 TraesCS2D01G171800 chr2A 93.092 2041 113 17 1 2020 117368553 117370586 0.000000e+00 2963.0
19 TraesCS2D01G171800 chr2A 92.476 824 41 8 2004 2810 117370597 117371416 0.000000e+00 1158.0
20 TraesCS2D01G171800 chr2A 94.792 192 9 1 6083 6274 117387047 117387237 1.390000e-76 298.0
21 TraesCS2D01G171800 chr2A 94.253 174 10 0 6430 6603 117387326 117387499 3.930000e-67 267.0
22 TraesCS2D01G171800 chr2A 84.793 217 21 7 3198 3408 447145477 447145687 2.410000e-49 207.0
23 TraesCS2D01G171800 chr2A 91.000 100 5 1 6311 6410 117387239 117387334 1.490000e-26 132.0
24 TraesCS2D01G171800 chr2A 83.333 78 12 1 417 493 689208948 689209025 3.300000e-08 71.3
25 TraesCS2D01G171800 chr2A 93.478 46 2 1 2436 2480 71148592 71148547 4.270000e-07 67.6
26 TraesCS2D01G171800 chr2A 80.460 87 15 2 403 488 674493305 674493390 1.540000e-06 65.8
27 TraesCS2D01G171800 chr1D 87.440 1449 171 9 4261 5702 439929060 439927616 0.000000e+00 1657.0
28 TraesCS2D01G171800 chr1D 84.395 942 117 19 993 1907 439931091 439930153 0.000000e+00 898.0
29 TraesCS2D01G171800 chr1D 77.796 626 113 19 2583 3197 375353296 375352686 4.870000e-96 363.0
30 TraesCS2D01G171800 chr1D 77.578 611 116 17 2583 3183 389331080 389330481 3.790000e-92 350.0
31 TraesCS2D01G171800 chr1D 98.947 95 1 0 5989 6083 265937650 265937556 3.170000e-38 171.0
32 TraesCS2D01G171800 chr1D 97.368 38 1 0 2443 2480 438843982 438844019 1.540000e-06 65.8
33 TraesCS2D01G171800 chr6D 85.409 1124 153 3 4516 5628 452912298 452913421 0.000000e+00 1157.0
34 TraesCS2D01G171800 chr6D 83.886 211 29 4 3203 3408 91562454 91562244 5.220000e-46 196.0
35 TraesCS2D01G171800 chr6D 92.754 69 0 1 5926 5989 43987930 43987998 1.960000e-15 95.3
36 TraesCS2D01G171800 chr6D 100.000 32 0 0 2444 2475 63069114 63069083 7.150000e-05 60.2
37 TraesCS2D01G171800 chr6B 84.973 1118 160 2 4519 5628 688030000 688031117 0.000000e+00 1127.0
38 TraesCS2D01G171800 chr6B 84.052 232 28 8 3200 3424 657620455 657620684 1.440000e-51 215.0
39 TraesCS2D01G171800 chr7D 75.652 920 201 18 4644 5553 591009079 591008173 2.830000e-118 436.0
40 TraesCS2D01G171800 chr7D 76.997 626 121 18 2583 3198 80327045 80326433 2.950000e-88 337.0
41 TraesCS2D01G171800 chr7D 78.004 541 101 15 2609 3143 41870370 41870898 2.300000e-84 324.0
42 TraesCS2D01G171800 chr3A 76.337 748 163 12 4631 5371 738245389 738244649 8.030000e-104 388.0
43 TraesCS2D01G171800 chr3A 75.912 274 56 4 176 449 171777863 171778126 1.490000e-26 132.0
44 TraesCS2D01G171800 chr6A 78.475 590 109 11 2617 3199 591940878 591940300 2.910000e-98 370.0
45 TraesCS2D01G171800 chr6A 92.754 69 0 1 5926 5989 155860124 155860056 1.960000e-15 95.3
46 TraesCS2D01G171800 chr5B 76.961 612 123 16 2583 3185 294125567 294124965 3.820000e-87 333.0
47 TraesCS2D01G171800 chr5B 98.947 95 1 0 5989 6083 713064610 713064516 3.170000e-38 171.0
48 TraesCS2D01G171800 chr5B 92.754 69 0 1 5926 5989 439642715 439642647 1.960000e-15 95.3
49 TraesCS2D01G171800 chr5B 97.959 49 1 0 5879 5927 34231024 34230976 1.180000e-12 86.1
50 TraesCS2D01G171800 chr5B 85.526 76 6 5 3329 3400 301205161 301205235 2.550000e-09 75.0
51 TraesCS2D01G171800 chr7A 79.725 291 42 12 3219 3492 665755937 665755647 1.880000e-45 195.0
52 TraesCS2D01G171800 chr7A 79.545 132 21 5 369 496 507763624 507763495 9.120000e-14 89.8
53 TraesCS2D01G171800 chr7A 97.297 37 0 1 2444 2480 716025721 716025686 1.990000e-05 62.1
54 TraesCS2D01G171800 chr1B 84.343 198 25 5 3203 3395 250414208 250414404 8.740000e-44 189.0
55 TraesCS2D01G171800 chr1B 95.918 49 2 0 5879 5927 311127946 311127898 5.490000e-11 80.5
56 TraesCS2D01G171800 chr3D 74.145 468 111 9 4909 5371 606002620 606003082 1.130000e-42 185.0
57 TraesCS2D01G171800 chr3D 98.947 95 1 0 5989 6083 154706812 154706718 3.170000e-38 171.0
58 TraesCS2D01G171800 chr3D 92.754 69 0 1 5926 5989 602887937 602888005 1.960000e-15 95.3
59 TraesCS2D01G171800 chrUn 98.947 95 1 0 5989 6083 40103461 40103555 3.170000e-38 171.0
60 TraesCS2D01G171800 chrUn 98.947 95 1 0 5989 6083 381190616 381190522 3.170000e-38 171.0
61 TraesCS2D01G171800 chrUn 91.304 69 1 1 5926 5989 45102664 45102596 9.120000e-14 89.8
62 TraesCS2D01G171800 chrUn 91.304 69 1 1 5926 5989 86503752 86503820 9.120000e-14 89.8
63 TraesCS2D01G171800 chrUn 91.304 69 1 1 5926 5989 186165651 186165583 9.120000e-14 89.8
64 TraesCS2D01G171800 chr4D 98.947 95 1 0 5989 6083 123621876 123621782 3.170000e-38 171.0
65 TraesCS2D01G171800 chr4D 98.947 95 1 0 5989 6083 135023066 135023160 3.170000e-38 171.0
66 TraesCS2D01G171800 chr4D 92.537 67 0 1 5926 5987 241387174 241387108 2.540000e-14 91.6
67 TraesCS2D01G171800 chr4B 98.947 95 1 0 5989 6083 209167964 209167870 3.170000e-38 171.0
68 TraesCS2D01G171800 chr4B 98.947 95 1 0 5989 6083 252951764 252951858 3.170000e-38 171.0
69 TraesCS2D01G171800 chr4B 97.917 48 1 0 5879 5926 310445244 310445291 4.240000e-12 84.2
70 TraesCS2D01G171800 chr1A 79.042 167 32 3 331 494 524393204 524393038 1.950000e-20 111.0
71 TraesCS2D01G171800 chr7B 74.812 266 54 8 231 493 332174573 332174828 2.520000e-19 108.0
72 TraesCS2D01G171800 chr7B 95.833 48 2 0 5879 5926 139572524 139572571 1.970000e-10 78.7
73 TraesCS2D01G171800 chr7B 94.872 39 2 0 333 371 689552840 689552802 1.990000e-05 62.1
74 TraesCS2D01G171800 chr5D 97.959 49 1 0 5879 5927 79791692 79791740 1.180000e-12 86.1
75 TraesCS2D01G171800 chr5D 95.918 49 2 0 5879 5927 80056082 80056130 5.490000e-11 80.5
76 TraesCS2D01G171800 chr5D 95.000 40 0 2 2442 2480 22972580 22972618 1.990000e-05 62.1
77 TraesCS2D01G171800 chr3B 97.959 49 1 0 5879 5927 730159626 730159578 1.180000e-12 86.1
78 TraesCS2D01G171800 chr3B 97.297 37 1 0 2444 2480 222677504 222677540 5.530000e-06 63.9
79 TraesCS2D01G171800 chr3B 86.792 53 6 1 2429 2480 586432537 586432589 2.570000e-04 58.4
80 TraesCS2D01G171800 chr4A 78.295 129 24 3 367 493 189667366 189667492 5.490000e-11 80.5
81 TraesCS2D01G171800 chr5A 81.609 87 13 3 408 493 31282922 31283006 1.190000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G171800 chr2D 115935333 115941935 6602 False 12194.000000 12194 100.000000 1 6603 1 chr2D.!!$F1 6602
1 TraesCS2D01G171800 chr2D 635210603 635211242 639 True 281.000000 281 75.115000 2554 3195 1 chr2D.!!$R2 641
2 TraesCS2D01G171800 chr2B 166462300 166465921 3621 False 1160.500000 5027 95.246600 2722 6602 5 chr2B.!!$F5 3880
3 TraesCS2D01G171800 chr2B 166426353 166431012 4659 False 1087.666667 2477 91.141667 321 2725 3 chr2B.!!$F4 2404
4 TraesCS2D01G171800 chr2A 117368553 117371416 2863 False 2060.500000 2963 92.784000 1 2810 2 chr2A.!!$F4 2809
5 TraesCS2D01G171800 chr2A 117383958 117387499 3541 False 1363.250000 4756 93.657750 2809 6603 4 chr2A.!!$F5 3794
6 TraesCS2D01G171800 chr1D 439927616 439931091 3475 True 1277.500000 1657 85.917500 993 5702 2 chr1D.!!$R4 4709
7 TraesCS2D01G171800 chr1D 375352686 375353296 610 True 363.000000 363 77.796000 2583 3197 1 chr1D.!!$R2 614
8 TraesCS2D01G171800 chr1D 389330481 389331080 599 True 350.000000 350 77.578000 2583 3183 1 chr1D.!!$R3 600
9 TraesCS2D01G171800 chr6D 452912298 452913421 1123 False 1157.000000 1157 85.409000 4516 5628 1 chr6D.!!$F2 1112
10 TraesCS2D01G171800 chr6B 688030000 688031117 1117 False 1127.000000 1127 84.973000 4519 5628 1 chr6B.!!$F2 1109
11 TraesCS2D01G171800 chr7D 591008173 591009079 906 True 436.000000 436 75.652000 4644 5553 1 chr7D.!!$R2 909
12 TraesCS2D01G171800 chr7D 80326433 80327045 612 True 337.000000 337 76.997000 2583 3198 1 chr7D.!!$R1 615
13 TraesCS2D01G171800 chr7D 41870370 41870898 528 False 324.000000 324 78.004000 2609 3143 1 chr7D.!!$F1 534
14 TraesCS2D01G171800 chr3A 738244649 738245389 740 True 388.000000 388 76.337000 4631 5371 1 chr3A.!!$R1 740
15 TraesCS2D01G171800 chr6A 591940300 591940878 578 True 370.000000 370 78.475000 2617 3199 1 chr6A.!!$R2 582
16 TraesCS2D01G171800 chr5B 294124965 294125567 602 True 333.000000 333 76.961000 2583 3185 1 chr5B.!!$R2 602

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
777 3126 0.092351 GTATGTCACACCGCGTTTCG 59.908 55.0 4.92 0.00 38.08 3.46 F
1026 3383 0.519519 TCAACAAATTAGCACCCGCG 59.480 50.0 0.00 0.00 45.49 6.46 F
2537 4970 0.243907 TTTCGCTTCTCCTCCTCACG 59.756 55.0 0.00 0.00 0.00 4.35 F
3519 6032 0.107312 CCTCACCATCAAGAGCCCTG 60.107 60.0 0.00 0.00 0.00 4.45 F
3699 6218 0.118952 AACCCCCAATCAAAGCCCAT 59.881 50.0 0.00 0.00 0.00 4.00 F
5503 8319 1.471829 TTGCCTCTCTTGCGGAGACA 61.472 55.0 5.29 1.63 45.20 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2521 4952 1.027255 TCTCGTGAGGAGGAGAAGCG 61.027 60.000 1.99 0.0 43.34 4.68 R
2822 5314 1.039068 TATCCCGTAAAATCCGCCGA 58.961 50.000 0.00 0.0 0.00 5.54 R
3895 6415 0.833287 AGATTGCCTATGAGCCACGT 59.167 50.000 0.00 0.0 0.00 4.49 R
5503 8319 1.347707 TCTCCCTTGAGACGCAAACAT 59.652 47.619 0.00 0.0 42.73 2.71 R
5590 8408 2.807967 TCGCTCCTTTCAACAACATGAG 59.192 45.455 0.00 0.0 0.00 2.90 R
6428 9263 1.652947 ACCGTTCAATAGTCCTGGGT 58.347 50.000 0.00 0.0 0.00 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.870383 GCATCGGGCGTTGTAACAA 59.130 52.632 0.00 0.00 0.00 2.83
40 41 2.518949 GTTGTAACAATCCATGCGCAG 58.481 47.619 18.32 8.11 0.00 5.18
64 65 3.084579 CGACATCTGCCGCAAGTC 58.915 61.111 9.20 9.20 0.00 3.01
65 66 2.792290 CGACATCTGCCGCAAGTCG 61.792 63.158 20.85 20.85 44.64 4.18
70 71 2.244117 ATCTGCCGCAAGTCGATGGT 62.244 55.000 0.00 0.00 41.67 3.55
77 78 1.672030 CAAGTCGATGGTGGCTGCA 60.672 57.895 0.50 0.00 0.00 4.41
78 79 1.028330 CAAGTCGATGGTGGCTGCAT 61.028 55.000 0.50 0.00 0.00 3.96
84 85 1.379443 ATGGTGGCTGCATGTCCTG 60.379 57.895 0.50 0.00 0.00 3.86
93 94 1.133181 TGCATGTCCTGAGGGTGGAA 61.133 55.000 0.00 0.00 35.10 3.53
132 133 1.201429 ACCTTGATGCGAAGGGGAGT 61.201 55.000 12.26 0.00 46.11 3.85
145 146 2.185608 GGAGTGAAGAGGAGGCGC 59.814 66.667 0.00 0.00 0.00 6.53
149 150 4.742201 TGAAGAGGAGGCGCGTGC 62.742 66.667 13.78 13.78 41.71 5.34
159 160 4.599434 GCGCGTGCGACCACAAAA 62.599 61.111 19.66 0.00 42.17 2.44
234 235 1.132029 CGTCAGACGTCGTCGACAT 59.868 57.895 30.67 10.29 36.60 3.06
237 238 2.152699 CAGACGTCGTCGACATGGC 61.153 63.158 24.13 11.72 37.67 4.40
245 246 1.080093 GTCGACATGGCGAACTCCA 60.080 57.895 28.25 0.00 42.55 3.86
248 249 1.375908 GACATGGCGAACTCCAGCA 60.376 57.895 0.00 0.00 39.89 4.41
251 252 1.377725 ATGGCGAACTCCAGCAAGG 60.378 57.895 0.00 0.00 39.89 3.61
350 351 0.319555 TCTCCCGCAACTTCACTTCG 60.320 55.000 0.00 0.00 0.00 3.79
696 3045 9.976776 TGGAATAATAAACTTACCACATTACCA 57.023 29.630 0.00 0.00 0.00 3.25
700 3049 6.746745 ATAAACTTACCACATTACCAACGG 57.253 37.500 0.00 0.00 0.00 4.44
701 3050 3.775261 ACTTACCACATTACCAACGGT 57.225 42.857 0.00 0.00 40.16 4.83
712 3061 0.831966 ACCAACGGTCCAACACACTA 59.168 50.000 0.00 0.00 0.00 2.74
717 3066 2.309613 ACGGTCCAACACACTACACTA 58.690 47.619 0.00 0.00 0.00 2.74
726 3075 8.472413 GTCCAACACACTACACTATTTAGGATA 58.528 37.037 0.00 0.00 0.00 2.59
776 3125 1.126113 CTGTATGTCACACCGCGTTTC 59.874 52.381 4.92 0.00 32.33 2.78
777 3126 0.092351 GTATGTCACACCGCGTTTCG 59.908 55.000 4.92 0.00 38.08 3.46
799 3148 3.436015 GCATAGAATAGCTGCATGGACTG 59.564 47.826 1.02 0.00 35.96 3.51
805 3154 0.689055 AGCTGCATGGACTGTTCTCA 59.311 50.000 1.02 0.00 0.00 3.27
819 3170 4.759183 ACTGTTCTCATTCTGCCTTTTCTC 59.241 41.667 0.00 0.00 0.00 2.87
868 3219 2.427232 TAACAAGACGAACCAGTCCG 57.573 50.000 0.00 0.00 41.83 4.79
884 3235 0.689745 TCCGATTCCCACCTACCCTG 60.690 60.000 0.00 0.00 0.00 4.45
885 3236 1.696097 CCGATTCCCACCTACCCTGG 61.696 65.000 0.00 0.00 0.00 4.45
946 3303 2.492484 AGACTAACAAGCGACTGGTAGG 59.508 50.000 12.31 1.50 40.36 3.18
948 3305 0.970640 TAACAAGCGACTGGTAGGCA 59.029 50.000 0.00 0.00 0.00 4.75
963 3320 4.038042 TGGTAGGCAGAAATCACTAGATCG 59.962 45.833 0.00 0.00 31.90 3.69
1026 3383 0.519519 TCAACAAATTAGCACCCGCG 59.480 50.000 0.00 0.00 45.49 6.46
1048 3414 1.375523 GGGTTCACCGTAGCACTGG 60.376 63.158 0.00 0.00 36.71 4.00
1455 3827 1.359117 CTACATCGGCGACACGGAT 59.641 57.895 13.76 0.00 38.77 4.18
1734 4121 4.351054 CTGGTGGTGGACTGGGCC 62.351 72.222 0.00 0.00 0.00 5.80
1961 4348 3.477210 ACAACCAAGTCTCCAGTCTTC 57.523 47.619 0.00 0.00 0.00 2.87
2037 4451 8.384365 CGGTTTGTTAAAGCAAAATACAACTTT 58.616 29.630 4.65 0.00 39.65 2.66
2185 4608 8.833231 TTTTCCAAGTAAGATTAGTCTCACTG 57.167 34.615 0.00 0.00 33.09 3.66
2192 4615 4.607293 AGATTAGTCTCACTGTTGCACA 57.393 40.909 0.00 0.00 0.00 4.57
2219 4642 6.179906 CCATCTACTGGTCCAAGTAATGAT 57.820 41.667 0.00 0.00 40.49 2.45
2257 4680 7.625828 AACCGAGGTTCCAATCTTAATTTAG 57.374 36.000 0.93 0.00 32.09 1.85
2485 4909 1.087771 GCAACGGGGACATAGGTTCG 61.088 60.000 0.00 0.00 0.00 3.95
2537 4970 0.243907 TTTCGCTTCTCCTCCTCACG 59.756 55.000 0.00 0.00 0.00 4.35
2696 5185 7.496346 AGGTGATATTTGGAGTTTGTCTAGA 57.504 36.000 0.00 0.00 0.00 2.43
2784 5276 2.624557 CCTAGCCTCTGTCCTAGTGGTT 60.625 54.545 0.00 0.00 41.22 3.67
2822 5314 0.180406 GGTGTGTGGAGGTGTGTCTT 59.820 55.000 0.00 0.00 0.00 3.01
2854 5346 1.431496 CGGGATACGTTCGGTGTTTT 58.569 50.000 0.00 0.00 37.93 2.43
2989 5483 1.073923 CTGGTCCTTTGTGGCCTTAGT 59.926 52.381 3.32 0.00 34.48 2.24
3014 5508 3.204526 ACGACTTCCCGACTATCTACTG 58.795 50.000 0.00 0.00 0.00 2.74
3106 5603 0.817654 TAGTCATCGCTGGTGGTCTG 59.182 55.000 0.00 0.00 0.00 3.51
3284 5797 7.016153 TGATTTGAGTATGGTTAGTGAAGGT 57.984 36.000 0.00 0.00 0.00 3.50
3463 5976 4.517453 TGTACAAACACTAAACCTGCCATC 59.483 41.667 0.00 0.00 0.00 3.51
3519 6032 0.107312 CCTCACCATCAAGAGCCCTG 60.107 60.000 0.00 0.00 0.00 4.45
3538 6051 3.190874 CTGTAGCCTCTCTTTAAAGCGG 58.809 50.000 10.51 11.07 0.00 5.52
3602 6118 4.524714 TGGAATTAAGCAAATTTCGACCCA 59.475 37.500 0.00 0.00 37.93 4.51
3667 6186 1.401018 GCCCACAATTTGCACTACGAC 60.401 52.381 0.00 0.00 0.00 4.34
3676 6195 6.636850 ACAATTTGCACTACGACAATCTTTTC 59.363 34.615 0.00 0.00 0.00 2.29
3699 6218 0.118952 AACCCCCAATCAAAGCCCAT 59.881 50.000 0.00 0.00 0.00 4.00
3823 6343 8.786898 CAGGAACTATGACCATGTTAAATATGG 58.213 37.037 15.15 15.15 44.18 2.74
4144 6899 5.533528 GTCAATATATTACCCGCCCAAGTTT 59.466 40.000 0.00 0.00 0.00 2.66
4190 6992 7.148289 CCACATGACATGGCTAATATTCTGATC 60.148 40.741 19.39 0.00 33.60 2.92
4247 7052 9.807921 AACATATGTATTACCTTGGGGAAATAG 57.192 33.333 9.21 0.00 36.25 1.73
4258 7063 6.041637 ACCTTGGGGAAATAGTGTTTTTCTTC 59.958 38.462 0.00 0.00 34.29 2.87
4448 7254 5.821204 ACCAAAAAGAAAACTCTCGTCATG 58.179 37.500 0.00 0.00 0.00 3.07
4829 7636 1.651987 CCAACGTGTGGTGGCTATAG 58.348 55.000 8.17 0.00 43.20 1.31
5103 7910 7.507277 TCTCTGTTATCTACATACATCTGCCTT 59.493 37.037 0.00 0.00 35.85 4.35
5207 8017 5.938125 GGTGCTTCAAGAACAGTTCCTATTA 59.062 40.000 9.85 0.00 0.00 0.98
5242 8052 5.007823 TGTTACCACAAATGTACAAGGAACG 59.992 40.000 0.00 0.00 0.00 3.95
5297 8107 3.894427 TGGGCAACTAAATGAGAAAAGCA 59.106 39.130 0.00 0.00 0.00 3.91
5336 8146 6.495872 TGGTGTGGTACTCATAGAGTTACTTT 59.504 38.462 4.85 0.00 40.28 2.66
5479 8295 3.248266 AGCAAGCGAAGATGAAATTTGC 58.752 40.909 0.00 0.00 39.61 3.68
5503 8319 1.471829 TTGCCTCTCTTGCGGAGACA 61.472 55.000 5.29 1.63 45.20 3.41
5590 8408 3.653344 GAACAAAAAGGTTGGCCTCATC 58.347 45.455 3.32 0.00 46.33 2.92
5629 8447 2.095212 GCGAAGAAGAAATCCAACCACC 60.095 50.000 0.00 0.00 0.00 4.61
5640 8458 1.433985 TCCAACCACCTGTCCCTAGTA 59.566 52.381 0.00 0.00 0.00 1.82
5717 8535 1.257743 TCTTCAGTTCGGGGTGAGAG 58.742 55.000 0.00 0.00 0.00 3.20
5759 8577 1.903877 ATGTCCCGGGTGAGAGCTTG 61.904 60.000 22.86 0.00 0.00 4.01
5898 8731 7.254227 AGACTATCACTGTCTTTATCGACTC 57.746 40.000 0.00 0.00 41.45 3.36
5899 8732 6.261381 AGACTATCACTGTCTTTATCGACTCC 59.739 42.308 0.00 0.00 41.45 3.85
5900 8733 5.886474 ACTATCACTGTCTTTATCGACTCCA 59.114 40.000 0.00 0.00 35.00 3.86
5901 8734 5.860941 ATCACTGTCTTTATCGACTCCAT 57.139 39.130 0.00 0.00 35.00 3.41
5902 8735 4.998788 TCACTGTCTTTATCGACTCCATG 58.001 43.478 0.00 0.00 35.00 3.66
5903 8736 3.553511 CACTGTCTTTATCGACTCCATGC 59.446 47.826 0.00 0.00 35.00 4.06
5904 8737 3.195610 ACTGTCTTTATCGACTCCATGCA 59.804 43.478 0.00 0.00 35.00 3.96
5905 8738 4.183865 CTGTCTTTATCGACTCCATGCAA 58.816 43.478 0.00 0.00 35.00 4.08
5906 8739 4.574892 TGTCTTTATCGACTCCATGCAAA 58.425 39.130 0.00 0.00 35.00 3.68
5907 8740 5.000591 TGTCTTTATCGACTCCATGCAAAA 58.999 37.500 0.00 0.00 35.00 2.44
5908 8741 5.106712 TGTCTTTATCGACTCCATGCAAAAC 60.107 40.000 0.00 0.00 35.00 2.43
5909 8742 5.000591 TCTTTATCGACTCCATGCAAAACA 58.999 37.500 0.00 0.00 0.00 2.83
5910 8743 5.647658 TCTTTATCGACTCCATGCAAAACAT 59.352 36.000 0.00 0.00 40.66 2.71
5924 8757 6.301687 TGCAAAACATGTTCATTGGATTTG 57.698 33.333 19.59 14.84 32.62 2.32
5925 8758 6.053650 TGCAAAACATGTTCATTGGATTTGA 58.946 32.000 19.59 5.01 31.84 2.69
5926 8759 6.711194 TGCAAAACATGTTCATTGGATTTGAT 59.289 30.769 19.59 0.00 31.84 2.57
5927 8760 7.095144 TGCAAAACATGTTCATTGGATTTGATC 60.095 33.333 19.59 5.90 31.84 2.92
5928 8761 7.095144 GCAAAACATGTTCATTGGATTTGATCA 60.095 33.333 19.59 0.00 31.84 2.92
5929 8762 8.775527 CAAAACATGTTCATTGGATTTGATCAA 58.224 29.630 12.39 3.38 31.84 2.57
5930 8763 7.894376 AACATGTTCATTGGATTTGATCAAC 57.106 32.000 7.89 0.00 0.00 3.18
5931 8764 6.995364 ACATGTTCATTGGATTTGATCAACA 58.005 32.000 7.89 0.00 0.00 3.33
5932 8765 7.617225 ACATGTTCATTGGATTTGATCAACAT 58.383 30.769 7.89 5.30 33.70 2.71
5933 8766 7.762615 ACATGTTCATTGGATTTGATCAACATC 59.237 33.333 7.89 13.40 32.15 3.06
5934 8767 7.470935 TGTTCATTGGATTTGATCAACATCT 57.529 32.000 7.89 0.00 0.00 2.90
5935 8768 7.541162 TGTTCATTGGATTTGATCAACATCTC 58.459 34.615 7.89 3.07 0.00 2.75
5936 8769 6.367686 TCATTGGATTTGATCAACATCTCG 57.632 37.500 7.89 5.60 0.00 4.04
5937 8770 6.114767 TCATTGGATTTGATCAACATCTCGA 58.885 36.000 7.89 8.74 0.00 4.04
5938 8771 5.801350 TTGGATTTGATCAACATCTCGAC 57.199 39.130 7.89 3.50 0.00 4.20
5939 8772 5.089970 TGGATTTGATCAACATCTCGACT 57.910 39.130 7.89 0.00 0.00 4.18
5940 8773 5.491070 TGGATTTGATCAACATCTCGACTT 58.509 37.500 7.89 0.00 0.00 3.01
5941 8774 5.582269 TGGATTTGATCAACATCTCGACTTC 59.418 40.000 7.89 2.02 0.00 3.01
5942 8775 5.276584 GGATTTGATCAACATCTCGACTTCG 60.277 44.000 7.89 0.00 41.45 3.79
5943 8776 2.530177 TGATCAACATCTCGACTTCGC 58.470 47.619 0.00 0.00 39.60 4.70
5944 8777 2.164422 TGATCAACATCTCGACTTCGCT 59.836 45.455 0.00 0.00 39.60 4.93
5945 8778 2.264109 TCAACATCTCGACTTCGCTC 57.736 50.000 0.00 0.00 39.60 5.03
5946 8779 0.910513 CAACATCTCGACTTCGCTCG 59.089 55.000 0.00 0.00 39.60 5.03
5947 8780 0.522180 AACATCTCGACTTCGCTCGT 59.478 50.000 0.00 0.00 39.60 4.18
5948 8781 0.522180 ACATCTCGACTTCGCTCGTT 59.478 50.000 0.00 0.00 39.60 3.85
5949 8782 0.910513 CATCTCGACTTCGCTCGTTG 59.089 55.000 0.00 0.00 39.60 4.10
5950 8783 0.522180 ATCTCGACTTCGCTCGTTGT 59.478 50.000 0.00 0.00 39.60 3.32
5951 8784 0.309922 TCTCGACTTCGCTCGTTGTT 59.690 50.000 0.00 0.00 39.60 2.83
5952 8785 1.129326 CTCGACTTCGCTCGTTGTTT 58.871 50.000 0.00 0.00 39.60 2.83
5953 8786 0.850217 TCGACTTCGCTCGTTGTTTG 59.150 50.000 0.00 0.00 39.60 2.93
5954 8787 0.850217 CGACTTCGCTCGTTGTTTGA 59.150 50.000 0.00 0.00 0.00 2.69
5955 8788 1.136884 CGACTTCGCTCGTTGTTTGAG 60.137 52.381 0.00 0.00 36.53 3.02
5956 8789 1.192534 GACTTCGCTCGTTGTTTGAGG 59.807 52.381 0.00 0.00 33.99 3.86
5957 8790 1.217882 CTTCGCTCGTTGTTTGAGGT 58.782 50.000 0.00 0.00 33.99 3.85
5958 8791 2.223876 ACTTCGCTCGTTGTTTGAGGTA 60.224 45.455 0.00 0.00 33.99 3.08
5959 8792 2.512485 TCGCTCGTTGTTTGAGGTAA 57.488 45.000 0.00 0.00 33.99 2.85
5960 8793 2.400399 TCGCTCGTTGTTTGAGGTAAG 58.600 47.619 0.00 0.00 33.99 2.34
5961 8794 2.132762 CGCTCGTTGTTTGAGGTAAGT 58.867 47.619 0.00 0.00 33.99 2.24
5962 8795 3.004629 TCGCTCGTTGTTTGAGGTAAGTA 59.995 43.478 0.00 0.00 33.99 2.24
5963 8796 3.924686 CGCTCGTTGTTTGAGGTAAGTAT 59.075 43.478 0.00 0.00 33.99 2.12
5964 8797 5.097529 CGCTCGTTGTTTGAGGTAAGTATA 58.902 41.667 0.00 0.00 33.99 1.47
5965 8798 5.229469 CGCTCGTTGTTTGAGGTAAGTATAG 59.771 44.000 0.00 0.00 33.99 1.31
5966 8799 6.327934 GCTCGTTGTTTGAGGTAAGTATAGA 58.672 40.000 0.00 0.00 33.99 1.98
5967 8800 6.979238 GCTCGTTGTTTGAGGTAAGTATAGAT 59.021 38.462 0.00 0.00 33.99 1.98
5968 8801 7.167801 GCTCGTTGTTTGAGGTAAGTATAGATC 59.832 40.741 0.00 0.00 33.99 2.75
5969 8802 8.058667 TCGTTGTTTGAGGTAAGTATAGATCA 57.941 34.615 0.00 0.00 0.00 2.92
5970 8803 8.188799 TCGTTGTTTGAGGTAAGTATAGATCAG 58.811 37.037 0.00 0.00 0.00 2.90
5971 8804 8.188799 CGTTGTTTGAGGTAAGTATAGATCAGA 58.811 37.037 0.00 0.00 0.00 3.27
5974 8807 9.647918 TGTTTGAGGTAAGTATAGATCAGATCT 57.352 33.333 17.34 17.34 43.33 2.75
5975 8808 9.906660 GTTTGAGGTAAGTATAGATCAGATCTG 57.093 37.037 21.58 17.07 40.51 2.90
5976 8809 9.647918 TTTGAGGTAAGTATAGATCAGATCTGT 57.352 33.333 21.58 17.55 40.51 3.41
5977 8810 8.856153 TGAGGTAAGTATAGATCAGATCTGTC 57.144 38.462 21.58 17.37 40.51 3.51
5978 8811 7.885922 TGAGGTAAGTATAGATCAGATCTGTCC 59.114 40.741 21.58 14.36 40.51 4.02
5979 8812 7.179269 AGGTAAGTATAGATCAGATCTGTCCC 58.821 42.308 21.58 12.06 40.51 4.46
5980 8813 6.094325 GGTAAGTATAGATCAGATCTGTCCCG 59.906 46.154 21.58 0.00 40.51 5.14
5981 8814 4.594970 AGTATAGATCAGATCTGTCCCGG 58.405 47.826 21.58 0.00 40.51 5.73
5982 8815 2.294449 TAGATCAGATCTGTCCCGGG 57.706 55.000 21.58 16.85 40.51 5.73
5983 8816 0.558220 AGATCAGATCTGTCCCGGGA 59.442 55.000 22.63 22.63 38.44 5.14
5984 8817 1.062886 AGATCAGATCTGTCCCGGGAA 60.063 52.381 28.84 11.12 38.44 3.97
5985 8818 1.974236 GATCAGATCTGTCCCGGGAAT 59.026 52.381 28.84 16.49 0.00 3.01
5986 8819 1.414158 TCAGATCTGTCCCGGGAATC 58.586 55.000 28.84 24.40 0.00 2.52
5987 8820 0.032678 CAGATCTGTCCCGGGAATCG 59.967 60.000 28.84 16.69 38.88 3.34
5988 8821 0.106167 AGATCTGTCCCGGGAATCGA 60.106 55.000 28.84 21.64 42.43 3.59
5989 8822 0.315568 GATCTGTCCCGGGAATCGAG 59.684 60.000 28.84 18.48 42.43 4.04
5990 8823 1.115930 ATCTGTCCCGGGAATCGAGG 61.116 60.000 28.84 11.73 42.43 4.63
5991 8824 2.038329 TGTCCCGGGAATCGAGGT 59.962 61.111 28.84 0.00 42.43 3.85
5992 8825 2.017559 CTGTCCCGGGAATCGAGGTC 62.018 65.000 28.84 11.03 42.43 3.85
5993 8826 2.056223 GTCCCGGGAATCGAGGTCA 61.056 63.158 28.84 0.00 42.43 4.02
5994 8827 1.075525 TCCCGGGAATCGAGGTCAT 60.076 57.895 24.50 0.00 42.43 3.06
5995 8828 0.689745 TCCCGGGAATCGAGGTCATT 60.690 55.000 24.50 0.00 42.43 2.57
5996 8829 0.180406 CCCGGGAATCGAGGTCATTT 59.820 55.000 18.48 0.00 42.43 2.32
5997 8830 1.299541 CCGGGAATCGAGGTCATTTG 58.700 55.000 0.00 0.00 42.43 2.32
5998 8831 1.406887 CCGGGAATCGAGGTCATTTGT 60.407 52.381 0.00 0.00 42.43 2.83
5999 8832 2.159014 CCGGGAATCGAGGTCATTTGTA 60.159 50.000 0.00 0.00 42.43 2.41
6000 8833 3.527533 CGGGAATCGAGGTCATTTGTAA 58.472 45.455 0.00 0.00 42.43 2.41
6001 8834 4.127171 CGGGAATCGAGGTCATTTGTAAT 58.873 43.478 0.00 0.00 42.43 1.89
6002 8835 4.574828 CGGGAATCGAGGTCATTTGTAATT 59.425 41.667 0.00 0.00 42.43 1.40
6003 8836 5.756347 CGGGAATCGAGGTCATTTGTAATTA 59.244 40.000 0.00 0.00 42.43 1.40
6004 8837 6.073765 CGGGAATCGAGGTCATTTGTAATTAG 60.074 42.308 0.00 0.00 42.43 1.73
6005 8838 6.204882 GGGAATCGAGGTCATTTGTAATTAGG 59.795 42.308 0.00 0.00 0.00 2.69
6006 8839 6.766467 GGAATCGAGGTCATTTGTAATTAGGT 59.234 38.462 0.00 0.00 0.00 3.08
6007 8840 7.254795 GGAATCGAGGTCATTTGTAATTAGGTG 60.255 40.741 0.00 0.00 0.00 4.00
6008 8841 6.045072 TCGAGGTCATTTGTAATTAGGTGT 57.955 37.500 0.00 0.00 0.00 4.16
6009 8842 5.872617 TCGAGGTCATTTGTAATTAGGTGTG 59.127 40.000 0.00 0.00 0.00 3.82
6010 8843 5.064707 CGAGGTCATTTGTAATTAGGTGTGG 59.935 44.000 0.00 0.00 0.00 4.17
6011 8844 4.705023 AGGTCATTTGTAATTAGGTGTGGC 59.295 41.667 0.00 0.00 0.00 5.01
6012 8845 4.705023 GGTCATTTGTAATTAGGTGTGGCT 59.295 41.667 0.00 0.00 0.00 4.75
6013 8846 5.393027 GGTCATTTGTAATTAGGTGTGGCTG 60.393 44.000 0.00 0.00 0.00 4.85
6014 8847 5.414454 GTCATTTGTAATTAGGTGTGGCTGA 59.586 40.000 0.00 0.00 0.00 4.26
6015 8848 6.095440 GTCATTTGTAATTAGGTGTGGCTGAT 59.905 38.462 0.00 0.00 0.00 2.90
6016 8849 5.895636 TTTGTAATTAGGTGTGGCTGATG 57.104 39.130 0.00 0.00 0.00 3.07
6017 8850 3.278574 TGTAATTAGGTGTGGCTGATGC 58.721 45.455 0.00 0.00 38.76 3.91
6018 8851 2.512692 AATTAGGTGTGGCTGATGCA 57.487 45.000 0.00 0.00 41.91 3.96
6019 8852 2.512692 ATTAGGTGTGGCTGATGCAA 57.487 45.000 0.00 0.00 41.91 4.08
6020 8853 1.825090 TTAGGTGTGGCTGATGCAAG 58.175 50.000 0.00 0.00 41.91 4.01
6021 8854 0.983467 TAGGTGTGGCTGATGCAAGA 59.017 50.000 0.00 0.00 41.91 3.02
6022 8855 0.111061 AGGTGTGGCTGATGCAAGAA 59.889 50.000 0.00 0.00 41.91 2.52
6023 8856 0.524862 GGTGTGGCTGATGCAAGAAG 59.475 55.000 0.00 0.00 41.91 2.85
6024 8857 1.527034 GTGTGGCTGATGCAAGAAGA 58.473 50.000 0.00 0.00 41.91 2.87
6025 8858 1.198637 GTGTGGCTGATGCAAGAAGAC 59.801 52.381 0.00 0.00 41.91 3.01
6026 8859 1.072806 TGTGGCTGATGCAAGAAGACT 59.927 47.619 0.00 0.00 41.91 3.24
6027 8860 1.467734 GTGGCTGATGCAAGAAGACTG 59.532 52.381 0.00 0.00 41.91 3.51
6028 8861 1.093159 GGCTGATGCAAGAAGACTGG 58.907 55.000 0.00 0.00 41.91 4.00
6029 8862 0.450983 GCTGATGCAAGAAGACTGGC 59.549 55.000 0.00 0.00 42.95 4.85
6030 8863 0.725686 CTGATGCAAGAAGACTGGCG 59.274 55.000 0.00 0.00 45.39 5.69
6031 8864 0.321346 TGATGCAAGAAGACTGGCGA 59.679 50.000 0.00 0.00 45.39 5.54
6032 8865 1.005340 GATGCAAGAAGACTGGCGAG 58.995 55.000 0.00 0.00 45.39 5.03
6033 8866 1.023513 ATGCAAGAAGACTGGCGAGC 61.024 55.000 0.00 0.00 45.39 5.03
6034 8867 1.375268 GCAAGAAGACTGGCGAGCT 60.375 57.895 0.00 0.00 33.12 4.09
6035 8868 1.633852 GCAAGAAGACTGGCGAGCTG 61.634 60.000 0.00 0.00 33.12 4.24
6036 8869 0.320247 CAAGAAGACTGGCGAGCTGT 60.320 55.000 0.00 0.00 0.00 4.40
6037 8870 0.037790 AAGAAGACTGGCGAGCTGTC 60.038 55.000 0.00 11.47 0.00 3.51
6038 8871 1.446966 GAAGACTGGCGAGCTGTCC 60.447 63.158 14.24 0.00 0.00 4.02
6039 8872 2.159819 GAAGACTGGCGAGCTGTCCA 62.160 60.000 14.24 0.00 0.00 4.02
6040 8873 1.548357 AAGACTGGCGAGCTGTCCAT 61.548 55.000 14.24 5.55 0.00 3.41
6041 8874 1.812922 GACTGGCGAGCTGTCCATG 60.813 63.158 0.00 0.00 0.00 3.66
6042 8875 2.513204 CTGGCGAGCTGTCCATGG 60.513 66.667 4.97 4.97 0.00 3.66
6043 8876 3.320879 CTGGCGAGCTGTCCATGGT 62.321 63.158 12.58 0.00 0.00 3.55
6044 8877 2.821366 GGCGAGCTGTCCATGGTG 60.821 66.667 12.58 4.75 0.00 4.17
6045 8878 2.265739 GCGAGCTGTCCATGGTGA 59.734 61.111 12.58 0.00 0.00 4.02
6046 8879 1.812922 GCGAGCTGTCCATGGTGAG 60.813 63.158 12.58 9.87 0.00 3.51
6047 8880 1.893062 CGAGCTGTCCATGGTGAGA 59.107 57.895 12.58 0.00 0.00 3.27
6048 8881 0.247460 CGAGCTGTCCATGGTGAGAA 59.753 55.000 12.58 0.00 0.00 2.87
6049 8882 1.338105 CGAGCTGTCCATGGTGAGAAA 60.338 52.381 12.58 0.00 0.00 2.52
6050 8883 2.783135 GAGCTGTCCATGGTGAGAAAA 58.217 47.619 12.58 0.00 0.00 2.29
6051 8884 2.746362 GAGCTGTCCATGGTGAGAAAAG 59.254 50.000 12.58 0.00 0.00 2.27
6052 8885 2.107204 AGCTGTCCATGGTGAGAAAAGT 59.893 45.455 12.58 0.00 0.00 2.66
6053 8886 2.887152 GCTGTCCATGGTGAGAAAAGTT 59.113 45.455 12.58 0.00 0.00 2.66
6054 8887 4.072131 GCTGTCCATGGTGAGAAAAGTTA 58.928 43.478 12.58 0.00 0.00 2.24
6055 8888 4.702131 GCTGTCCATGGTGAGAAAAGTTAT 59.298 41.667 12.58 0.00 0.00 1.89
6056 8889 5.392380 GCTGTCCATGGTGAGAAAAGTTATG 60.392 44.000 12.58 0.00 0.00 1.90
6057 8890 5.875224 TGTCCATGGTGAGAAAAGTTATGA 58.125 37.500 12.58 0.00 0.00 2.15
6058 8891 6.484288 TGTCCATGGTGAGAAAAGTTATGAT 58.516 36.000 12.58 0.00 0.00 2.45
6059 8892 6.375174 TGTCCATGGTGAGAAAAGTTATGATG 59.625 38.462 12.58 0.00 0.00 3.07
6060 8893 5.357878 TCCATGGTGAGAAAAGTTATGATGC 59.642 40.000 12.58 0.00 0.00 3.91
6061 8894 5.359009 CCATGGTGAGAAAAGTTATGATGCT 59.641 40.000 2.57 0.00 0.00 3.79
6062 8895 6.543465 CCATGGTGAGAAAAGTTATGATGCTA 59.457 38.462 2.57 0.00 0.00 3.49
6063 8896 6.985188 TGGTGAGAAAAGTTATGATGCTAC 57.015 37.500 0.00 0.00 0.00 3.58
6064 8897 6.711277 TGGTGAGAAAAGTTATGATGCTACT 58.289 36.000 0.00 0.00 0.00 2.57
6065 8898 6.595326 TGGTGAGAAAAGTTATGATGCTACTG 59.405 38.462 0.00 0.00 0.00 2.74
6066 8899 6.457528 GGTGAGAAAAGTTATGATGCTACTGC 60.458 42.308 0.00 0.00 40.20 4.40
6098 8931 3.392616 CCTGGTGGGAGTAGAATAATGCT 59.607 47.826 0.00 0.00 37.23 3.79
6131 8964 2.771089 ACACATGTACTGCAGTCAAGG 58.229 47.619 25.56 16.71 0.00 3.61
6223 9056 9.322773 CTTCTCAGAGTATATTTCATGCAAGAA 57.677 33.333 0.00 0.00 0.00 2.52
6246 9080 5.481200 TTGTGACAACATTTTGCCATTTG 57.519 34.783 0.00 0.00 35.83 2.32
6247 9081 4.511527 TGTGACAACATTTTGCCATTTGT 58.488 34.783 0.00 0.00 36.00 2.83
6248 9082 4.331992 TGTGACAACATTTTGCCATTTGTG 59.668 37.500 0.00 0.00 36.00 3.33
6249 9083 4.332268 GTGACAACATTTTGCCATTTGTGT 59.668 37.500 0.00 0.00 36.00 3.72
6250 9084 4.569966 TGACAACATTTTGCCATTTGTGTC 59.430 37.500 0.00 0.00 36.00 3.67
6251 9085 4.768583 ACAACATTTTGCCATTTGTGTCT 58.231 34.783 0.00 0.00 36.00 3.41
6252 9086 5.184711 ACAACATTTTGCCATTTGTGTCTT 58.815 33.333 0.00 0.00 36.00 3.01
6253 9087 5.064962 ACAACATTTTGCCATTTGTGTCTTG 59.935 36.000 0.00 0.00 36.00 3.02
6254 9088 3.560896 ACATTTTGCCATTTGTGTCTTGC 59.439 39.130 0.00 0.00 0.00 4.01
6255 9089 3.540314 TTTTGCCATTTGTGTCTTGCT 57.460 38.095 0.00 0.00 0.00 3.91
6256 9090 2.512485 TTGCCATTTGTGTCTTGCTG 57.488 45.000 0.00 0.00 0.00 4.41
6257 9091 0.675083 TGCCATTTGTGTCTTGCTGG 59.325 50.000 0.00 0.00 0.00 4.85
6258 9092 0.675633 GCCATTTGTGTCTTGCTGGT 59.324 50.000 0.00 0.00 0.00 4.00
6259 9093 1.603678 GCCATTTGTGTCTTGCTGGTG 60.604 52.381 0.00 0.00 0.00 4.17
6260 9094 1.682854 CCATTTGTGTCTTGCTGGTGT 59.317 47.619 0.00 0.00 0.00 4.16
6261 9095 2.101249 CCATTTGTGTCTTGCTGGTGTT 59.899 45.455 0.00 0.00 0.00 3.32
6262 9096 3.430651 CCATTTGTGTCTTGCTGGTGTTT 60.431 43.478 0.00 0.00 0.00 2.83
6263 9097 2.937469 TTGTGTCTTGCTGGTGTTTG 57.063 45.000 0.00 0.00 0.00 2.93
6264 9098 1.832883 TGTGTCTTGCTGGTGTTTGT 58.167 45.000 0.00 0.00 0.00 2.83
6265 9099 2.166829 TGTGTCTTGCTGGTGTTTGTT 58.833 42.857 0.00 0.00 0.00 2.83
6266 9100 2.094803 TGTGTCTTGCTGGTGTTTGTTG 60.095 45.455 0.00 0.00 0.00 3.33
6267 9101 2.094752 GTGTCTTGCTGGTGTTTGTTGT 60.095 45.455 0.00 0.00 0.00 3.32
6268 9102 3.127895 GTGTCTTGCTGGTGTTTGTTGTA 59.872 43.478 0.00 0.00 0.00 2.41
6269 9103 3.759086 TGTCTTGCTGGTGTTTGTTGTAA 59.241 39.130 0.00 0.00 0.00 2.41
6270 9104 4.102649 GTCTTGCTGGTGTTTGTTGTAAC 58.897 43.478 0.00 0.00 0.00 2.50
6271 9105 3.759086 TCTTGCTGGTGTTTGTTGTAACA 59.241 39.130 0.00 0.00 35.75 2.41
6272 9106 4.218635 TCTTGCTGGTGTTTGTTGTAACAA 59.781 37.500 6.11 6.11 46.35 2.83
6310 9144 6.536582 TGTTTGTTGTAACAATGGAACAATGG 59.463 34.615 10.63 0.00 44.80 3.16
6311 9145 6.471233 TTGTTGTAACAATGGAACAATGGA 57.529 33.333 6.11 0.00 44.80 3.41
6312 9146 6.471233 TGTTGTAACAATGGAACAATGGAA 57.529 33.333 6.06 0.00 44.80 3.53
6313 9147 6.276847 TGTTGTAACAATGGAACAATGGAAC 58.723 36.000 6.06 0.00 44.80 3.62
6357 9191 4.640789 TTTTTCAAACATGCTGTACCGT 57.359 36.364 0.00 0.00 0.00 4.83
6358 9192 3.617540 TTTCAAACATGCTGTACCGTG 57.382 42.857 0.00 0.00 0.00 4.94
6365 9199 0.601576 ATGCTGTACCGTGCGTCAAA 60.602 50.000 0.00 0.00 0.00 2.69
6366 9200 1.203313 GCTGTACCGTGCGTCAAAC 59.797 57.895 0.00 0.00 0.00 2.93
6407 9242 0.321564 CATCCAAACAGACGCCAGGA 60.322 55.000 0.00 0.00 0.00 3.86
6408 9243 0.321653 ATCCAAACAGACGCCAGGAC 60.322 55.000 0.00 0.00 0.00 3.85
6409 9244 1.071471 CCAAACAGACGCCAGGACT 59.929 57.895 0.00 0.00 0.00 3.85
6410 9245 0.535102 CCAAACAGACGCCAGGACTT 60.535 55.000 0.00 0.00 0.00 3.01
6411 9246 1.308998 CAAACAGACGCCAGGACTTT 58.691 50.000 0.00 0.00 0.00 2.66
6412 9247 1.676006 CAAACAGACGCCAGGACTTTT 59.324 47.619 0.00 0.00 0.00 2.27
6413 9248 2.052782 AACAGACGCCAGGACTTTTT 57.947 45.000 0.00 0.00 0.00 1.94
6476 9311 2.007608 GCTACCGCTGTAGAAAAAGGG 58.992 52.381 18.36 0.00 46.18 3.95
6557 9392 6.380846 TGATAAATGGCAGGAAATACAAAGCT 59.619 34.615 0.00 0.00 0.00 3.74
6592 9427 0.326595 TGTGCACCGTCAACCCATAT 59.673 50.000 15.69 0.00 0.00 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.664185 CGCCCGATGCTCATCCAG 60.664 66.667 4.45 0.00 38.05 3.86
14 15 0.035036 TGGATTGTTACAACGCCCGA 59.965 50.000 13.77 0.00 0.00 5.14
20 21 2.518949 CTGCGCATGGATTGTTACAAC 58.481 47.619 12.24 0.00 0.00 3.32
63 64 1.450134 GACATGCAGCCACCATCGA 60.450 57.895 0.00 0.00 0.00 3.59
64 65 2.475466 GGACATGCAGCCACCATCG 61.475 63.158 0.00 0.00 0.00 3.84
65 66 1.077212 AGGACATGCAGCCACCATC 60.077 57.895 5.91 0.00 0.00 3.51
70 71 2.672908 CCTCAGGACATGCAGCCA 59.327 61.111 5.91 0.00 0.00 4.75
77 78 1.352352 CACTTTCCACCCTCAGGACAT 59.648 52.381 0.00 0.00 34.19 3.06
78 79 0.764890 CACTTTCCACCCTCAGGACA 59.235 55.000 0.00 0.00 34.19 4.02
84 85 3.056328 GCGCCACTTTCCACCCTC 61.056 66.667 0.00 0.00 0.00 4.30
93 94 1.526575 CCATGAACAAGGCGCCACTT 61.527 55.000 31.54 16.30 0.00 3.16
132 133 4.742201 GCACGCGCCTCCTCTTCA 62.742 66.667 5.73 0.00 0.00 3.02
145 146 4.893241 GACTTTTGTGGTCGCACG 57.107 55.556 0.00 0.00 0.00 5.34
155 156 2.046700 TAGGGGCGGCGACTTTTG 60.047 61.111 14.66 0.00 0.00 2.44
157 158 3.001406 AGTAGGGGCGGCGACTTT 61.001 61.111 14.66 3.31 0.00 2.66
234 235 2.032528 CCTTGCTGGAGTTCGCCA 59.967 61.111 0.00 0.00 38.35 5.69
245 246 2.503356 CCATGTCCTACTCTTCCTTGCT 59.497 50.000 0.00 0.00 0.00 3.91
248 249 3.108376 GTCCCATGTCCTACTCTTCCTT 58.892 50.000 0.00 0.00 0.00 3.36
251 252 2.100989 ACGTCCCATGTCCTACTCTTC 58.899 52.381 0.00 0.00 0.00 2.87
418 419 4.023365 ACTTAGTCTATATGTTCGTCGGCC 60.023 45.833 0.00 0.00 0.00 6.13
420 421 9.507280 TTTTAACTTAGTCTATATGTTCGTCGG 57.493 33.333 0.00 0.00 0.00 4.79
506 509 1.123928 AAACCGGGCAAATTGGACAA 58.876 45.000 6.32 0.00 0.00 3.18
549 552 1.045407 TATAGGGCTTCAACGCGGAT 58.955 50.000 12.47 0.00 0.00 4.18
625 636 0.874607 GTTACTGGGCTACATCGCGG 60.875 60.000 6.13 0.00 0.00 6.46
691 3040 1.209990 AGTGTGTTGGACCGTTGGTAA 59.790 47.619 0.00 0.00 35.25 2.85
692 3041 0.831966 AGTGTGTTGGACCGTTGGTA 59.168 50.000 0.00 0.00 35.25 3.25
694 3043 1.223187 GTAGTGTGTTGGACCGTTGG 58.777 55.000 0.00 0.00 0.00 3.77
695 3044 1.595794 GTGTAGTGTGTTGGACCGTTG 59.404 52.381 0.00 0.00 0.00 4.10
696 3045 1.483415 AGTGTAGTGTGTTGGACCGTT 59.517 47.619 0.00 0.00 0.00 4.44
697 3046 1.117150 AGTGTAGTGTGTTGGACCGT 58.883 50.000 0.00 0.00 0.00 4.83
698 3047 3.587797 ATAGTGTAGTGTGTTGGACCG 57.412 47.619 0.00 0.00 0.00 4.79
699 3048 5.873164 CCTAAATAGTGTAGTGTGTTGGACC 59.127 44.000 0.00 0.00 0.00 4.46
700 3049 6.694447 TCCTAAATAGTGTAGTGTGTTGGAC 58.306 40.000 0.00 0.00 0.00 4.02
701 3050 6.921486 TCCTAAATAGTGTAGTGTGTTGGA 57.079 37.500 0.00 0.00 0.00 3.53
712 3061 7.931948 GCACCAAGTGTATATCCTAAATAGTGT 59.068 37.037 0.00 0.00 35.75 3.55
717 3066 7.290061 ACATGCACCAAGTGTATATCCTAAAT 58.710 34.615 0.00 0.00 36.79 1.40
726 3075 6.658816 TGATAAGAAACATGCACCAAGTGTAT 59.341 34.615 0.00 0.00 39.29 2.29
776 3125 2.414481 GTCCATGCAGCTATTCTATGCG 59.586 50.000 0.00 0.00 42.92 4.73
777 3126 3.436015 CAGTCCATGCAGCTATTCTATGC 59.564 47.826 0.00 0.00 40.40 3.14
785 3134 1.901833 TGAGAACAGTCCATGCAGCTA 59.098 47.619 0.00 0.00 0.00 3.32
799 3148 3.997021 TCGAGAAAAGGCAGAATGAGAAC 59.003 43.478 0.00 0.00 39.69 3.01
805 3154 5.359194 TTCCTATCGAGAAAAGGCAGAAT 57.641 39.130 0.00 0.00 0.00 2.40
819 3170 2.734606 TGCTGTTTCGTGTTTCCTATCG 59.265 45.455 0.00 0.00 0.00 2.92
868 3219 1.821088 ATCCAGGGTAGGTGGGAATC 58.179 55.000 0.00 0.00 35.58 2.52
917 3273 6.978659 CCAGTCGCTTGTTAGTCTGAATAATA 59.021 38.462 0.56 0.00 0.00 0.98
946 3303 5.503194 GCTTTTCCGATCTAGTGATTTCTGC 60.503 44.000 0.00 0.00 32.19 4.26
948 3305 5.814705 CAGCTTTTCCGATCTAGTGATTTCT 59.185 40.000 0.00 0.00 32.19 2.52
963 3320 2.486918 ACAATTTGCAGCAGCTTTTCC 58.513 42.857 1.76 0.00 42.74 3.13
1026 3383 0.108472 GTGCTACGGTGAACCCTACC 60.108 60.000 0.00 0.00 34.81 3.18
1054 3420 4.379243 AACACTGGCGAGGCGGAG 62.379 66.667 12.58 6.92 0.00 4.63
1063 3429 2.328099 CCGAAGCTCCAACACTGGC 61.328 63.158 0.00 0.00 43.17 4.85
1230 3602 3.877508 GCACCTCCTGGTTGATGTAATAC 59.122 47.826 0.00 0.00 46.05 1.89
1394 3766 1.299089 GTGAACTTGTTGGCGGTGC 60.299 57.895 0.00 0.00 0.00 5.01
1734 4121 1.213537 CCCTTGCAGCGTTCCAATG 59.786 57.895 0.00 0.00 0.00 2.82
2123 4540 5.762711 GGCCTGTCAACAAAATTACCATTTT 59.237 36.000 0.00 0.00 42.37 1.82
2144 4561 3.068448 TGGAAAAGGTAAAAGAAACGGCC 59.932 43.478 0.00 0.00 0.00 6.13
2185 4608 3.900941 CCAGTAGATGGTTTTGTGCAAC 58.099 45.455 0.00 0.00 44.91 4.17
2219 4642 2.817258 CCTCGGTTTGGTGCAAGAATTA 59.183 45.455 0.00 0.00 0.00 1.40
2388 4812 4.167554 TCGATGTTGTGCCAAATTTACC 57.832 40.909 0.00 0.00 0.00 2.85
2398 4822 3.670055 CACCTGAAAATTCGATGTTGTGC 59.330 43.478 0.00 0.00 0.00 4.57
2517 4948 1.734047 CGTGAGGAGGAGAAGCGAAAG 60.734 57.143 0.00 0.00 0.00 2.62
2521 4952 1.027255 TCTCGTGAGGAGGAGAAGCG 61.027 60.000 1.99 0.00 43.34 4.68
2537 4970 2.856222 CCCTATTCATTGGGTGCTCTC 58.144 52.381 0.00 0.00 37.94 3.20
2696 5185 3.389329 TCTTCTTGAGCAGGACAGAAACT 59.611 43.478 0.00 0.00 0.00 2.66
2784 5276 1.207089 CCCTCCAATGACGCTAGACAA 59.793 52.381 0.00 0.00 0.00 3.18
2822 5314 1.039068 TATCCCGTAAAATCCGCCGA 58.961 50.000 0.00 0.00 0.00 5.54
2854 5346 4.551702 TCCAAACAGATCCATCGAAGAA 57.448 40.909 0.00 0.00 43.58 2.52
2989 5483 4.082665 AGATAGTCGGGAAGTCGTCATA 57.917 45.455 0.00 0.00 0.00 2.15
3061 5557 1.005037 TGATGCGAGTCAAAGGCGT 60.005 52.632 0.00 0.00 0.00 5.68
3212 5723 4.363573 TGGTGGGTGTAAGGTATATGTCA 58.636 43.478 0.00 0.00 0.00 3.58
3284 5797 7.947890 ACCTCACCTAAATCAAAACATTCCTTA 59.052 33.333 0.00 0.00 0.00 2.69
3411 5924 4.556233 CGTAGTCTCTCAAAACCACATCA 58.444 43.478 0.00 0.00 0.00 3.07
3463 5976 0.974383 AAGGGGAGTCTACGGTTGTG 59.026 55.000 0.00 0.00 0.00 3.33
3519 6032 3.248495 ACCGCTTTAAAGAGAGGCTAC 57.752 47.619 19.48 0.00 39.90 3.58
3538 6051 8.601845 AGGATTTTACATGCCTGTTTAAAAAC 57.398 30.769 0.00 1.60 36.79 2.43
3640 6159 2.037901 TGCAAATTGTGGGCTTTGAGA 58.962 42.857 0.00 0.00 34.93 3.27
3667 6186 3.466395 TGGGGGTTAGGGAAAAGATTG 57.534 47.619 0.00 0.00 0.00 2.67
3676 6195 1.485124 GCTTTGATTGGGGGTTAGGG 58.515 55.000 0.00 0.00 0.00 3.53
3895 6415 0.833287 AGATTGCCTATGAGCCACGT 59.167 50.000 0.00 0.00 0.00 4.49
4144 6899 3.838317 TGGCAGAAGACTAGCTTTCCTAA 59.162 43.478 0.00 0.00 36.83 2.69
4190 6992 6.477053 TCTTGACAAGATTAGGAGATCTGG 57.523 41.667 13.99 0.00 36.53 3.86
4247 7052 8.061125 AGCAAAACAATATCGAAGAAAAACAC 57.939 30.769 0.00 0.00 43.58 3.32
4625 7432 5.222079 TGGTTTTTCTGGAAATAAAGCCC 57.778 39.130 0.00 0.00 32.97 5.19
4829 7636 7.976175 AGATTCCTCAACAAGTTTTGACTTTTC 59.024 33.333 0.00 0.00 32.02 2.29
5103 7910 4.911514 TCACGATGAAAGACCGATATCA 57.088 40.909 3.12 0.00 0.00 2.15
5297 8107 7.228590 AGTACCACACCAAAACTATACACATT 58.771 34.615 0.00 0.00 0.00 2.71
5336 8146 7.339466 ACTTCTAAAAACAGGCTCTTTTCTTGA 59.661 33.333 0.86 0.00 0.00 3.02
5422 8238 1.861982 TGGCTACCACCTCTCTTACC 58.138 55.000 0.00 0.00 0.00 2.85
5479 8295 1.699656 CCGCAAGAGAGGCAACGATG 61.700 60.000 0.00 0.00 41.84 3.84
5503 8319 1.347707 TCTCCCTTGAGACGCAAACAT 59.652 47.619 0.00 0.00 42.73 2.71
5590 8408 2.807967 TCGCTCCTTTCAACAACATGAG 59.192 45.455 0.00 0.00 0.00 2.90
5629 8447 5.109903 CGAAAGGTTGAATACTAGGGACAG 58.890 45.833 0.00 0.00 0.00 3.51
5640 8458 5.221303 CCATATGAATGGCGAAAGGTTGAAT 60.221 40.000 3.65 0.00 46.17 2.57
5728 8546 2.749621 CCCGGGACATTCTCAAAAAGAG 59.250 50.000 18.48 0.00 46.14 2.85
5738 8556 1.153349 GCTCTCACCCGGGACATTC 60.153 63.158 32.02 7.61 0.00 2.67
5746 8564 0.036952 ATGACACAAGCTCTCACCCG 60.037 55.000 0.00 0.00 0.00 5.28
5759 8577 4.986622 GGAACCAGATAAGCAAATGACAC 58.013 43.478 0.00 0.00 0.00 3.67
5878 8711 6.735968 GCATGGAGTCGATAAAGACAGTGATA 60.736 42.308 0.00 0.00 43.24 2.15
5879 8712 5.595885 CATGGAGTCGATAAAGACAGTGAT 58.404 41.667 0.00 0.00 43.24 3.06
5880 8713 4.678044 GCATGGAGTCGATAAAGACAGTGA 60.678 45.833 0.00 0.00 43.24 3.41
5881 8714 3.553511 GCATGGAGTCGATAAAGACAGTG 59.446 47.826 0.00 0.00 43.24 3.66
5882 8715 3.195610 TGCATGGAGTCGATAAAGACAGT 59.804 43.478 0.00 0.00 43.24 3.55
5883 8716 3.785486 TGCATGGAGTCGATAAAGACAG 58.215 45.455 0.00 0.00 43.24 3.51
5884 8717 3.885724 TGCATGGAGTCGATAAAGACA 57.114 42.857 0.00 0.00 43.24 3.41
5885 8718 5.106712 TGTTTTGCATGGAGTCGATAAAGAC 60.107 40.000 0.00 0.00 41.23 3.01
5886 8719 5.000591 TGTTTTGCATGGAGTCGATAAAGA 58.999 37.500 0.00 0.00 0.00 2.52
5887 8720 5.295431 TGTTTTGCATGGAGTCGATAAAG 57.705 39.130 0.00 0.00 0.00 1.85
5888 8721 5.895636 ATGTTTTGCATGGAGTCGATAAA 57.104 34.783 0.00 0.00 36.26 1.40
5900 8733 6.711194 TCAAATCCAATGAACATGTTTTGCAT 59.289 30.769 13.36 8.89 38.60 3.96
5901 8734 6.053650 TCAAATCCAATGAACATGTTTTGCA 58.946 32.000 13.36 6.73 0.00 4.08
5902 8735 6.542574 TCAAATCCAATGAACATGTTTTGC 57.457 33.333 13.36 0.30 0.00 3.68
5903 8736 8.312896 TGATCAAATCCAATGAACATGTTTTG 57.687 30.769 13.36 13.59 0.00 2.44
5904 8737 8.776470 GTTGATCAAATCCAATGAACATGTTTT 58.224 29.630 13.36 0.62 30.97 2.43
5905 8738 7.932491 TGTTGATCAAATCCAATGAACATGTTT 59.068 29.630 13.36 0.00 30.97 2.83
5906 8739 7.443477 TGTTGATCAAATCCAATGAACATGTT 58.557 30.769 11.78 11.78 30.97 2.71
5907 8740 6.995364 TGTTGATCAAATCCAATGAACATGT 58.005 32.000 10.35 0.00 30.97 3.21
5908 8741 7.979537 AGATGTTGATCAAATCCAATGAACATG 59.020 33.333 10.35 0.00 33.64 3.21
5909 8742 8.074613 AGATGTTGATCAAATCCAATGAACAT 57.925 30.769 10.35 5.89 35.15 2.71
5910 8743 7.470935 AGATGTTGATCAAATCCAATGAACA 57.529 32.000 10.35 0.54 0.00 3.18
5911 8744 6.690098 CGAGATGTTGATCAAATCCAATGAAC 59.310 38.462 10.35 0.00 0.00 3.18
5912 8745 6.598850 TCGAGATGTTGATCAAATCCAATGAA 59.401 34.615 10.35 0.00 0.00 2.57
5913 8746 6.037500 GTCGAGATGTTGATCAAATCCAATGA 59.962 38.462 10.35 8.09 0.00 2.57
5914 8747 6.037940 AGTCGAGATGTTGATCAAATCCAATG 59.962 38.462 10.35 6.30 0.00 2.82
5915 8748 6.118170 AGTCGAGATGTTGATCAAATCCAAT 58.882 36.000 10.35 0.00 0.00 3.16
5916 8749 5.491070 AGTCGAGATGTTGATCAAATCCAA 58.509 37.500 10.35 2.50 0.00 3.53
5917 8750 5.089970 AGTCGAGATGTTGATCAAATCCA 57.910 39.130 10.35 4.62 0.00 3.41
5918 8751 5.276584 CGAAGTCGAGATGTTGATCAAATCC 60.277 44.000 10.35 0.00 43.02 3.01
5919 8752 5.722237 CGAAGTCGAGATGTTGATCAAATC 58.278 41.667 10.35 14.39 43.02 2.17
5920 8753 4.033358 GCGAAGTCGAGATGTTGATCAAAT 59.967 41.667 10.35 6.29 43.02 2.32
5921 8754 3.367932 GCGAAGTCGAGATGTTGATCAAA 59.632 43.478 10.35 1.23 43.02 2.69
5922 8755 2.923655 GCGAAGTCGAGATGTTGATCAA 59.076 45.455 3.38 3.38 43.02 2.57
5923 8756 2.164422 AGCGAAGTCGAGATGTTGATCA 59.836 45.455 4.59 0.00 43.02 2.92
5924 8757 2.786578 GAGCGAAGTCGAGATGTTGATC 59.213 50.000 4.59 0.00 43.02 2.92
5925 8758 2.792890 CGAGCGAAGTCGAGATGTTGAT 60.793 50.000 4.59 0.00 42.85 2.57
5926 8759 1.465856 CGAGCGAAGTCGAGATGTTGA 60.466 52.381 4.59 0.00 42.85 3.18
5927 8760 0.910513 CGAGCGAAGTCGAGATGTTG 59.089 55.000 4.59 0.00 42.85 3.33
5928 8761 0.522180 ACGAGCGAAGTCGAGATGTT 59.478 50.000 4.59 0.00 42.85 2.71
5929 8762 0.522180 AACGAGCGAAGTCGAGATGT 59.478 50.000 4.59 0.00 42.85 3.06
5930 8763 0.910513 CAACGAGCGAAGTCGAGATG 59.089 55.000 4.59 0.00 42.85 2.90
5931 8764 0.522180 ACAACGAGCGAAGTCGAGAT 59.478 50.000 4.59 0.00 42.85 2.75
5932 8765 0.309922 AACAACGAGCGAAGTCGAGA 59.690 50.000 4.59 0.00 42.85 4.04
5933 8766 1.129326 AAACAACGAGCGAAGTCGAG 58.871 50.000 4.59 0.00 42.85 4.04
5934 8767 0.850217 CAAACAACGAGCGAAGTCGA 59.150 50.000 4.59 0.00 42.85 4.20
5935 8768 0.850217 TCAAACAACGAGCGAAGTCG 59.150 50.000 0.00 0.00 45.76 4.18
5936 8769 1.192534 CCTCAAACAACGAGCGAAGTC 59.807 52.381 0.00 0.00 0.00 3.01
5937 8770 1.217882 CCTCAAACAACGAGCGAAGT 58.782 50.000 0.00 0.00 0.00 3.01
5938 8771 1.217882 ACCTCAAACAACGAGCGAAG 58.782 50.000 0.00 0.00 0.00 3.79
5939 8772 2.512485 TACCTCAAACAACGAGCGAA 57.488 45.000 0.00 0.00 0.00 4.70
5940 8773 2.223876 ACTTACCTCAAACAACGAGCGA 60.224 45.455 0.00 0.00 0.00 4.93
5941 8774 2.132762 ACTTACCTCAAACAACGAGCG 58.867 47.619 0.00 0.00 0.00 5.03
5942 8775 6.327934 TCTATACTTACCTCAAACAACGAGC 58.672 40.000 0.00 0.00 0.00 5.03
5943 8776 8.188799 TGATCTATACTTACCTCAAACAACGAG 58.811 37.037 0.00 0.00 0.00 4.18
5944 8777 8.058667 TGATCTATACTTACCTCAAACAACGA 57.941 34.615 0.00 0.00 0.00 3.85
5945 8778 8.188799 TCTGATCTATACTTACCTCAAACAACG 58.811 37.037 0.00 0.00 0.00 4.10
5948 8781 9.647918 AGATCTGATCTATACTTACCTCAAACA 57.352 33.333 18.24 0.00 38.00 2.83
5949 8782 9.906660 CAGATCTGATCTATACTTACCTCAAAC 57.093 37.037 18.34 0.00 37.58 2.93
5950 8783 9.647918 ACAGATCTGATCTATACTTACCTCAAA 57.352 33.333 29.27 0.00 37.58 2.69
5951 8784 9.290988 GACAGATCTGATCTATACTTACCTCAA 57.709 37.037 29.27 0.00 37.58 3.02
5952 8785 7.885922 GGACAGATCTGATCTATACTTACCTCA 59.114 40.741 29.27 0.00 37.58 3.86
5953 8786 7.338449 GGGACAGATCTGATCTATACTTACCTC 59.662 44.444 29.27 10.28 37.58 3.85
5954 8787 7.179269 GGGACAGATCTGATCTATACTTACCT 58.821 42.308 29.27 0.75 37.58 3.08
5955 8788 6.094325 CGGGACAGATCTGATCTATACTTACC 59.906 46.154 29.27 12.09 37.58 2.85
5956 8789 6.094325 CCGGGACAGATCTGATCTATACTTAC 59.906 46.154 29.27 3.77 37.58 2.34
5957 8790 6.181190 CCGGGACAGATCTGATCTATACTTA 58.819 44.000 29.27 0.00 37.58 2.24
5958 8791 5.013547 CCGGGACAGATCTGATCTATACTT 58.986 45.833 29.27 2.82 37.58 2.24
5959 8792 4.568804 CCCGGGACAGATCTGATCTATACT 60.569 50.000 29.27 3.62 37.58 2.12
5960 8793 3.697045 CCCGGGACAGATCTGATCTATAC 59.303 52.174 29.27 9.74 37.58 1.47
5961 8794 3.591977 TCCCGGGACAGATCTGATCTATA 59.408 47.826 29.27 6.03 37.58 1.31
5962 8795 2.380249 TCCCGGGACAGATCTGATCTAT 59.620 50.000 29.27 9.14 37.58 1.98
5963 8796 1.780919 TCCCGGGACAGATCTGATCTA 59.219 52.381 29.27 4.92 37.58 1.98
5964 8797 0.558220 TCCCGGGACAGATCTGATCT 59.442 55.000 29.27 14.31 41.15 2.75
5965 8798 1.414158 TTCCCGGGACAGATCTGATC 58.586 55.000 29.27 20.17 0.00 2.92
5966 8799 1.974236 GATTCCCGGGACAGATCTGAT 59.026 52.381 29.27 11.84 0.00 2.90
5967 8800 1.414158 GATTCCCGGGACAGATCTGA 58.586 55.000 29.27 6.10 0.00 3.27
5968 8801 0.032678 CGATTCCCGGGACAGATCTG 59.967 60.000 26.87 21.37 33.91 2.90
5969 8802 0.106167 TCGATTCCCGGGACAGATCT 60.106 55.000 26.87 3.35 39.14 2.75
5970 8803 0.315568 CTCGATTCCCGGGACAGATC 59.684 60.000 26.87 22.52 42.61 2.75
5971 8804 1.115930 CCTCGATTCCCGGGACAGAT 61.116 60.000 26.87 15.43 42.61 2.90
5972 8805 1.756950 CCTCGATTCCCGGGACAGA 60.757 63.158 26.87 21.07 42.61 3.41
5973 8806 2.017559 GACCTCGATTCCCGGGACAG 62.018 65.000 26.87 17.73 42.61 3.51
5974 8807 2.038329 ACCTCGATTCCCGGGACA 59.962 61.111 26.87 15.52 42.61 4.02
5975 8808 1.400530 ATGACCTCGATTCCCGGGAC 61.401 60.000 26.87 12.58 42.61 4.46
5976 8809 0.689745 AATGACCTCGATTCCCGGGA 60.690 55.000 22.63 22.63 42.61 5.14
5977 8810 0.180406 AAATGACCTCGATTCCCGGG 59.820 55.000 16.85 16.85 39.14 5.73
5978 8811 1.299541 CAAATGACCTCGATTCCCGG 58.700 55.000 0.00 0.00 39.14 5.73
5979 8812 2.024176 ACAAATGACCTCGATTCCCG 57.976 50.000 0.00 0.00 40.25 5.14
5980 8813 6.204882 CCTAATTACAAATGACCTCGATTCCC 59.795 42.308 0.00 0.00 0.00 3.97
5981 8814 6.766467 ACCTAATTACAAATGACCTCGATTCC 59.234 38.462 0.00 0.00 0.00 3.01
5982 8815 7.280205 ACACCTAATTACAAATGACCTCGATTC 59.720 37.037 0.00 0.00 0.00 2.52
5983 8816 7.065803 CACACCTAATTACAAATGACCTCGATT 59.934 37.037 0.00 0.00 0.00 3.34
5984 8817 6.538742 CACACCTAATTACAAATGACCTCGAT 59.461 38.462 0.00 0.00 0.00 3.59
5985 8818 5.872617 CACACCTAATTACAAATGACCTCGA 59.127 40.000 0.00 0.00 0.00 4.04
5986 8819 5.064707 CCACACCTAATTACAAATGACCTCG 59.935 44.000 0.00 0.00 0.00 4.63
5987 8820 5.163652 GCCACACCTAATTACAAATGACCTC 60.164 44.000 0.00 0.00 0.00 3.85
5988 8821 4.705023 GCCACACCTAATTACAAATGACCT 59.295 41.667 0.00 0.00 0.00 3.85
5989 8822 4.705023 AGCCACACCTAATTACAAATGACC 59.295 41.667 0.00 0.00 0.00 4.02
5990 8823 5.414454 TCAGCCACACCTAATTACAAATGAC 59.586 40.000 0.00 0.00 0.00 3.06
5991 8824 5.565509 TCAGCCACACCTAATTACAAATGA 58.434 37.500 0.00 0.00 0.00 2.57
5992 8825 5.895636 TCAGCCACACCTAATTACAAATG 57.104 39.130 0.00 0.00 0.00 2.32
5993 8826 5.163519 GCATCAGCCACACCTAATTACAAAT 60.164 40.000 0.00 0.00 33.58 2.32
5994 8827 4.157656 GCATCAGCCACACCTAATTACAAA 59.842 41.667 0.00 0.00 33.58 2.83
5995 8828 3.694072 GCATCAGCCACACCTAATTACAA 59.306 43.478 0.00 0.00 33.58 2.41
5996 8829 3.278574 GCATCAGCCACACCTAATTACA 58.721 45.455 0.00 0.00 33.58 2.41
5997 8830 3.278574 TGCATCAGCCACACCTAATTAC 58.721 45.455 0.00 0.00 41.13 1.89
5998 8831 3.643199 TGCATCAGCCACACCTAATTA 57.357 42.857 0.00 0.00 41.13 1.40
5999 8832 2.512692 TGCATCAGCCACACCTAATT 57.487 45.000 0.00 0.00 41.13 1.40
6000 8833 2.025981 TCTTGCATCAGCCACACCTAAT 60.026 45.455 0.00 0.00 41.13 1.73
6001 8834 1.350684 TCTTGCATCAGCCACACCTAA 59.649 47.619 0.00 0.00 41.13 2.69
6002 8835 0.983467 TCTTGCATCAGCCACACCTA 59.017 50.000 0.00 0.00 41.13 3.08
6003 8836 0.111061 TTCTTGCATCAGCCACACCT 59.889 50.000 0.00 0.00 41.13 4.00
6004 8837 0.524862 CTTCTTGCATCAGCCACACC 59.475 55.000 0.00 0.00 41.13 4.16
6005 8838 1.198637 GTCTTCTTGCATCAGCCACAC 59.801 52.381 0.00 0.00 41.13 3.82
6006 8839 1.072806 AGTCTTCTTGCATCAGCCACA 59.927 47.619 0.00 0.00 41.13 4.17
6007 8840 1.467734 CAGTCTTCTTGCATCAGCCAC 59.532 52.381 0.00 0.00 41.13 5.01
6008 8841 1.612462 CCAGTCTTCTTGCATCAGCCA 60.612 52.381 0.00 0.00 41.13 4.75
6009 8842 1.093159 CCAGTCTTCTTGCATCAGCC 58.907 55.000 0.00 0.00 41.13 4.85
6010 8843 0.450983 GCCAGTCTTCTTGCATCAGC 59.549 55.000 0.00 0.00 42.57 4.26
6011 8844 0.725686 CGCCAGTCTTCTTGCATCAG 59.274 55.000 0.00 0.00 32.73 2.90
6012 8845 0.321346 TCGCCAGTCTTCTTGCATCA 59.679 50.000 0.00 0.00 32.73 3.07
6013 8846 1.005340 CTCGCCAGTCTTCTTGCATC 58.995 55.000 0.00 0.00 32.73 3.91
6014 8847 1.023513 GCTCGCCAGTCTTCTTGCAT 61.024 55.000 0.00 0.00 32.73 3.96
6015 8848 1.669115 GCTCGCCAGTCTTCTTGCA 60.669 57.895 0.00 0.00 32.73 4.08
6016 8849 1.375268 AGCTCGCCAGTCTTCTTGC 60.375 57.895 0.00 0.00 0.00 4.01
6017 8850 0.320247 ACAGCTCGCCAGTCTTCTTG 60.320 55.000 0.00 0.00 0.00 3.02
6018 8851 0.037790 GACAGCTCGCCAGTCTTCTT 60.038 55.000 5.24 0.00 0.00 2.52
6019 8852 1.589113 GACAGCTCGCCAGTCTTCT 59.411 57.895 5.24 0.00 0.00 2.85
6020 8853 1.446966 GGACAGCTCGCCAGTCTTC 60.447 63.158 10.54 0.00 32.98 2.87
6021 8854 1.548357 ATGGACAGCTCGCCAGTCTT 61.548 55.000 9.70 0.00 37.64 3.01
6022 8855 1.986757 ATGGACAGCTCGCCAGTCT 60.987 57.895 9.70 0.00 37.64 3.24
6023 8856 1.812922 CATGGACAGCTCGCCAGTC 60.813 63.158 9.70 1.77 37.64 3.51
6024 8857 2.267006 CATGGACAGCTCGCCAGT 59.733 61.111 9.70 0.00 37.64 4.00
6025 8858 2.513204 CCATGGACAGCTCGCCAG 60.513 66.667 5.56 3.11 37.64 4.85
6026 8859 3.321648 ACCATGGACAGCTCGCCA 61.322 61.111 21.47 6.53 38.78 5.69
6027 8860 2.821366 CACCATGGACAGCTCGCC 60.821 66.667 21.47 0.00 0.00 5.54
6028 8861 1.812922 CTCACCATGGACAGCTCGC 60.813 63.158 21.47 0.00 0.00 5.03
6029 8862 0.247460 TTCTCACCATGGACAGCTCG 59.753 55.000 21.47 0.00 0.00 5.03
6030 8863 2.479566 TTTCTCACCATGGACAGCTC 57.520 50.000 21.47 0.00 0.00 4.09
6031 8864 2.107204 ACTTTTCTCACCATGGACAGCT 59.893 45.455 21.47 0.00 0.00 4.24
6032 8865 2.508526 ACTTTTCTCACCATGGACAGC 58.491 47.619 21.47 0.00 0.00 4.40
6033 8866 5.939883 TCATAACTTTTCTCACCATGGACAG 59.060 40.000 21.47 13.43 0.00 3.51
6034 8867 5.875224 TCATAACTTTTCTCACCATGGACA 58.125 37.500 21.47 2.61 0.00 4.02
6035 8868 6.678900 GCATCATAACTTTTCTCACCATGGAC 60.679 42.308 21.47 0.00 0.00 4.02
6036 8869 5.357878 GCATCATAACTTTTCTCACCATGGA 59.642 40.000 21.47 0.00 0.00 3.41
6037 8870 5.359009 AGCATCATAACTTTTCTCACCATGG 59.641 40.000 11.19 11.19 0.00 3.66
6038 8871 6.446781 AGCATCATAACTTTTCTCACCATG 57.553 37.500 0.00 0.00 0.00 3.66
6039 8872 7.281774 CAGTAGCATCATAACTTTTCTCACCAT 59.718 37.037 0.00 0.00 0.00 3.55
6040 8873 6.595326 CAGTAGCATCATAACTTTTCTCACCA 59.405 38.462 0.00 0.00 0.00 4.17
6041 8874 6.457528 GCAGTAGCATCATAACTTTTCTCACC 60.458 42.308 0.00 0.00 41.58 4.02
6042 8875 6.481984 GCAGTAGCATCATAACTTTTCTCAC 58.518 40.000 0.00 0.00 41.58 3.51
6043 8876 6.668541 GCAGTAGCATCATAACTTTTCTCA 57.331 37.500 0.00 0.00 41.58 3.27
6069 8902 3.813724 CTCCCACCAGGATGCCCC 61.814 72.222 0.00 0.00 46.33 5.80
6070 8903 1.692749 TACTCCCACCAGGATGCCC 60.693 63.158 0.00 0.00 46.33 5.36
6071 8904 0.691078 TCTACTCCCACCAGGATGCC 60.691 60.000 0.00 0.00 46.33 4.40
6072 8905 1.204146 TTCTACTCCCACCAGGATGC 58.796 55.000 0.00 0.00 46.33 3.91
6073 8906 5.555017 CATTATTCTACTCCCACCAGGATG 58.445 45.833 0.00 0.00 46.33 3.51
6074 8907 4.042187 GCATTATTCTACTCCCACCAGGAT 59.958 45.833 0.00 0.00 46.33 3.24
6075 8908 3.391296 GCATTATTCTACTCCCACCAGGA 59.609 47.826 0.00 0.00 44.91 3.86
6076 8909 3.392616 AGCATTATTCTACTCCCACCAGG 59.607 47.826 0.00 0.00 0.00 4.45
6077 8910 4.696479 AGCATTATTCTACTCCCACCAG 57.304 45.455 0.00 0.00 0.00 4.00
6078 8911 5.450818 AAAGCATTATTCTACTCCCACCA 57.549 39.130 0.00 0.00 0.00 4.17
6098 8931 4.762765 AGTACATGTGTTTGGCCGAATAAA 59.237 37.500 9.15 0.83 0.00 1.40
6131 8964 4.278419 ACAGCCACAGAAAAATCTAACACC 59.722 41.667 0.00 0.00 0.00 4.16
6246 9080 2.094752 ACAACAAACACCAGCAAGACAC 60.095 45.455 0.00 0.00 0.00 3.67
6247 9081 2.166829 ACAACAAACACCAGCAAGACA 58.833 42.857 0.00 0.00 0.00 3.41
6248 9082 2.939460 ACAACAAACACCAGCAAGAC 57.061 45.000 0.00 0.00 0.00 3.01
6249 9083 3.759086 TGTTACAACAAACACCAGCAAGA 59.241 39.130 0.00 0.00 34.50 3.02
6250 9084 4.103365 TGTTACAACAAACACCAGCAAG 57.897 40.909 0.00 0.00 34.50 4.01
6251 9085 4.521130 TTGTTACAACAAACACCAGCAA 57.479 36.364 5.08 0.00 45.17 3.91
6262 9096 4.826733 ACCAGCAAGATCATTGTTACAACA 59.173 37.500 0.00 0.00 37.08 3.33
6263 9097 5.156355 CACCAGCAAGATCATTGTTACAAC 58.844 41.667 0.00 0.00 0.00 3.32
6264 9098 4.826733 ACACCAGCAAGATCATTGTTACAA 59.173 37.500 0.00 0.00 0.00 2.41
6265 9099 4.397420 ACACCAGCAAGATCATTGTTACA 58.603 39.130 0.00 0.00 0.00 2.41
6266 9100 5.376854 AACACCAGCAAGATCATTGTTAC 57.623 39.130 0.00 0.00 0.00 2.50
6267 9101 5.301551 ACAAACACCAGCAAGATCATTGTTA 59.698 36.000 0.00 0.00 0.00 2.41
6268 9102 4.099881 ACAAACACCAGCAAGATCATTGTT 59.900 37.500 0.00 0.00 0.00 2.83
6269 9103 3.638160 ACAAACACCAGCAAGATCATTGT 59.362 39.130 0.00 0.00 0.00 2.71
6270 9104 4.247267 ACAAACACCAGCAAGATCATTG 57.753 40.909 0.00 0.00 0.00 2.82
6271 9105 4.099881 ACAACAAACACCAGCAAGATCATT 59.900 37.500 0.00 0.00 0.00 2.57
6272 9106 3.638160 ACAACAAACACCAGCAAGATCAT 59.362 39.130 0.00 0.00 0.00 2.45
6273 9107 3.023119 ACAACAAACACCAGCAAGATCA 58.977 40.909 0.00 0.00 0.00 2.92
6274 9108 3.715628 ACAACAAACACCAGCAAGATC 57.284 42.857 0.00 0.00 0.00 2.75
6275 9109 4.400884 TGTTACAACAAACACCAGCAAGAT 59.599 37.500 0.00 0.00 34.50 2.40
6306 9140 6.210584 CCACTGTGGGTTATTTTAGTTCCATT 59.789 38.462 19.23 0.00 32.67 3.16
6307 9141 5.714806 CCACTGTGGGTTATTTTAGTTCCAT 59.285 40.000 19.23 0.00 32.67 3.41
6308 9142 5.074115 CCACTGTGGGTTATTTTAGTTCCA 58.926 41.667 19.23 0.00 32.67 3.53
6309 9143 5.074804 ACCACTGTGGGTTATTTTAGTTCC 58.925 41.667 29.05 0.00 43.37 3.62
6310 9144 5.766174 TGACCACTGTGGGTTATTTTAGTTC 59.234 40.000 29.05 13.86 43.37 3.01
6311 9145 5.697067 TGACCACTGTGGGTTATTTTAGTT 58.303 37.500 29.05 4.85 43.37 2.24
6312 9146 5.313280 TGACCACTGTGGGTTATTTTAGT 57.687 39.130 29.05 5.39 43.37 2.24
6313 9147 6.834168 AATGACCACTGTGGGTTATTTTAG 57.166 37.500 29.05 2.02 42.53 1.85
6357 9191 1.963855 CATCCGTGGGTTTGACGCA 60.964 57.895 0.00 0.00 38.80 5.24
6358 9192 2.867472 CATCCGTGGGTTTGACGC 59.133 61.111 0.00 0.00 35.45 5.19
6365 9199 3.954740 TAAGGGGGCATCCGTGGGT 62.955 63.158 0.00 0.00 36.01 4.51
6366 9200 3.093835 TAAGGGGGCATCCGTGGG 61.094 66.667 0.00 0.00 36.01 4.61
6414 9249 4.540099 AGTCCTGGGTATGATCCTCAAAAA 59.460 41.667 0.00 0.00 0.00 1.94
6415 9250 4.111577 AGTCCTGGGTATGATCCTCAAAA 58.888 43.478 0.00 0.00 0.00 2.44
6416 9251 3.736094 AGTCCTGGGTATGATCCTCAAA 58.264 45.455 0.00 0.00 0.00 2.69
6417 9252 3.421394 AGTCCTGGGTATGATCCTCAA 57.579 47.619 0.00 0.00 0.00 3.02
6418 9253 4.767000 ATAGTCCTGGGTATGATCCTCA 57.233 45.455 0.00 0.00 0.00 3.86
6419 9254 5.087323 TCAATAGTCCTGGGTATGATCCTC 58.913 45.833 0.00 0.00 0.00 3.71
6420 9255 5.093236 TCAATAGTCCTGGGTATGATCCT 57.907 43.478 0.00 0.00 0.00 3.24
6421 9256 5.552178 GTTCAATAGTCCTGGGTATGATCC 58.448 45.833 0.00 0.00 0.00 3.36
6422 9257 5.230942 CGTTCAATAGTCCTGGGTATGATC 58.769 45.833 0.00 0.00 0.00 2.92
6423 9258 4.040461 CCGTTCAATAGTCCTGGGTATGAT 59.960 45.833 0.00 0.00 0.00 2.45
6424 9259 3.386726 CCGTTCAATAGTCCTGGGTATGA 59.613 47.826 0.00 0.00 0.00 2.15
6425 9260 3.134081 ACCGTTCAATAGTCCTGGGTATG 59.866 47.826 0.00 0.00 0.00 2.39
6426 9261 3.381335 ACCGTTCAATAGTCCTGGGTAT 58.619 45.455 0.00 0.00 0.00 2.73
6427 9262 2.823959 ACCGTTCAATAGTCCTGGGTA 58.176 47.619 0.00 0.00 0.00 3.69
6428 9263 1.652947 ACCGTTCAATAGTCCTGGGT 58.347 50.000 0.00 0.00 0.00 4.51
6429 9264 2.027561 TGAACCGTTCAATAGTCCTGGG 60.028 50.000 11.63 0.00 36.59 4.45
6430 9265 3.328382 TGAACCGTTCAATAGTCCTGG 57.672 47.619 11.63 0.00 36.59 4.45
6431 9266 5.880054 AAATGAACCGTTCAATAGTCCTG 57.120 39.130 17.64 0.00 43.95 3.86
6432 9267 6.677913 CAAAAATGAACCGTTCAATAGTCCT 58.322 36.000 17.64 0.00 43.95 3.85
6433 9268 5.344933 GCAAAAATGAACCGTTCAATAGTCC 59.655 40.000 17.64 2.96 43.95 3.85
6434 9269 6.149633 AGCAAAAATGAACCGTTCAATAGTC 58.850 36.000 17.64 6.41 43.95 2.59
6462 9297 5.447624 TTAAGCAACCCTTTTTCTACAGC 57.552 39.130 0.00 0.00 34.95 4.40
6557 9392 5.468592 GGTGCACAAATCACAATTACATGA 58.531 37.500 20.43 0.00 36.22 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.