Multiple sequence alignment - TraesCS2D01G170500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G170500 chr2D 100.000 3140 0 0 1 3140 114540239 114537100 0.000000e+00 5799.0
1 TraesCS2D01G170500 chr2A 89.916 1904 154 18 491 2373 115788024 115786138 0.000000e+00 2418.0
2 TraesCS2D01G170500 chr2A 93.583 561 32 2 2487 3043 115757749 115757189 0.000000e+00 833.0
3 TraesCS2D01G170500 chr2A 89.050 484 53 0 8 491 115795802 115795319 4.480000e-168 601.0
4 TraesCS2D01G170500 chr2A 76.364 660 121 23 543 1175 56916713 56917364 3.910000e-84 322.0
5 TraesCS2D01G170500 chr2A 96.552 58 2 0 2433 2490 115785816 115785759 2.580000e-16 97.1
6 TraesCS2D01G170500 chr2B 92.404 1040 73 4 1038 2074 165068833 165067797 0.000000e+00 1478.0
7 TraesCS2D01G170500 chr2B 88.258 792 75 5 218 991 165072631 165071840 0.000000e+00 931.0
8 TraesCS2D01G170500 chr2B 93.622 439 28 0 2530 2968 164946859 164946421 0.000000e+00 656.0
9 TraesCS2D01G170500 chr2B 94.850 233 12 0 2530 2762 164956197 164955965 6.400000e-97 364.0
10 TraesCS2D01G170500 chr2B 91.781 219 18 0 1 219 165082310 165082092 3.930000e-79 305.0
11 TraesCS2D01G170500 chr2B 86.607 224 13 13 2072 2281 165067715 165067495 6.770000e-57 231.0
12 TraesCS2D01G170500 chr2B 88.235 136 9 3 3002 3137 164946414 164946286 4.190000e-34 156.0
13 TraesCS2D01G170500 chr4B 85.314 1212 148 13 10 1196 95710746 95709540 0.000000e+00 1225.0
14 TraesCS2D01G170500 chr4B 82.072 753 90 27 1564 2278 95709143 95708398 4.480000e-168 601.0
15 TraesCS2D01G170500 chr4B 77.632 380 67 13 12 387 95433751 95433386 6.820000e-52 215.0
16 TraesCS2D01G170500 chr4A 85.121 1203 155 13 10 1192 531105740 531104542 0.000000e+00 1208.0
17 TraesCS2D01G170500 chr4A 82.394 1011 116 30 1235 2224 698311418 698312387 0.000000e+00 824.0
18 TraesCS2D01G170500 chr4A 86.981 699 76 8 1537 2224 698492709 698493403 0.000000e+00 773.0
19 TraesCS2D01G170500 chr4A 85.837 699 78 12 1537 2224 698669281 698669969 0.000000e+00 723.0
20 TraesCS2D01G170500 chr4A 82.353 238 34 6 1235 1468 698492434 698492667 1.910000e-47 200.0
21 TraesCS2D01G170500 chr5D 84.723 1211 165 10 1 1193 506209647 506210855 0.000000e+00 1194.0
22 TraesCS2D01G170500 chr5D 85.149 808 102 6 403 1193 506167204 506168010 0.000000e+00 811.0
23 TraesCS2D01G170500 chr5D 82.101 676 91 13 1612 2262 506168015 506168685 4.580000e-153 551.0
24 TraesCS2D01G170500 chr3B 83.916 1144 142 20 83 1197 755206285 755207415 0.000000e+00 1055.0
25 TraesCS2D01G170500 chr3B 84.122 655 89 11 1497 2142 755207682 755208330 1.240000e-173 619.0
26 TraesCS2D01G170500 chr7D 83.730 1008 108 24 1235 2224 30396043 30397012 0.000000e+00 902.0
27 TraesCS2D01G170500 chr7D 83.847 681 87 5 534 1193 30395290 30395968 7.390000e-176 627.0
28 TraesCS2D01G170500 chr5B 84.282 808 109 8 403 1193 636928905 636929711 0.000000e+00 773.0
29 TraesCS2D01G170500 chr7A 85.781 647 75 8 1589 2223 30878602 30879243 0.000000e+00 669.0
30 TraesCS2D01G170500 chr7A 83.454 689 83 18 534 1196 30876241 30876924 2.070000e-171 612.0
31 TraesCS2D01G170500 chr7A 74.738 669 148 10 525 1176 217230533 217229869 2.380000e-71 279.0
32 TraesCS2D01G170500 chr7A 82.083 240 31 9 1235 1468 30876995 30877228 8.890000e-46 195.0
33 TraesCS2D01G170500 chr3A 82.487 788 106 14 1 767 701897513 701898289 0.000000e+00 662.0
34 TraesCS2D01G170500 chr3A 81.871 342 39 11 883 1201 701914577 701914918 1.860000e-67 267.0
35 TraesCS2D01G170500 chr3D 83.250 603 76 13 317 905 568522031 568521440 5.960000e-147 531.0
36 TraesCS2D01G170500 chr3D 87.162 296 34 4 3 296 568522318 568522025 1.800000e-87 333.0
37 TraesCS2D01G170500 chr3D 74.942 431 67 22 1083 1488 568509996 568509582 3.240000e-35 159.0
38 TraesCS2D01G170500 chr4D 77.176 609 103 22 601 1181 65860591 65861191 3.910000e-84 322.0
39 TraesCS2D01G170500 chr1B 88.235 187 22 0 2708 2894 113822538 113822352 1.130000e-54 224.0
40 TraesCS2D01G170500 chr1B 79.310 145 22 6 2611 2749 230032108 230031966 9.270000e-16 95.3
41 TraesCS2D01G170500 chr6B 87.701 187 23 0 2708 2894 544666652 544666466 5.270000e-53 219.0
42 TraesCS2D01G170500 chr1A 84.615 117 15 3 2809 2924 209357996 209358110 2.560000e-21 113.0
43 TraesCS2D01G170500 chr1D 74.766 321 44 24 2611 2924 149645031 149644741 3.310000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G170500 chr2D 114537100 114540239 3139 True 5799.00 5799 100.000000 1 3140 1 chr2D.!!$R1 3139
1 TraesCS2D01G170500 chr2A 115785759 115788024 2265 True 1257.55 2418 93.234000 491 2490 2 chr2A.!!$R3 1999
2 TraesCS2D01G170500 chr2A 115757189 115757749 560 True 833.00 833 93.583000 2487 3043 1 chr2A.!!$R1 556
3 TraesCS2D01G170500 chr2A 56916713 56917364 651 False 322.00 322 76.364000 543 1175 1 chr2A.!!$F1 632
4 TraesCS2D01G170500 chr2B 165067495 165072631 5136 True 880.00 1478 89.089667 218 2281 3 chr2B.!!$R4 2063
5 TraesCS2D01G170500 chr2B 164946286 164946859 573 True 406.00 656 90.928500 2530 3137 2 chr2B.!!$R3 607
6 TraesCS2D01G170500 chr4B 95708398 95710746 2348 True 913.00 1225 83.693000 10 2278 2 chr4B.!!$R2 2268
7 TraesCS2D01G170500 chr4A 531104542 531105740 1198 True 1208.00 1208 85.121000 10 1192 1 chr4A.!!$R1 1182
8 TraesCS2D01G170500 chr4A 698311418 698312387 969 False 824.00 824 82.394000 1235 2224 1 chr4A.!!$F1 989
9 TraesCS2D01G170500 chr4A 698669281 698669969 688 False 723.00 723 85.837000 1537 2224 1 chr4A.!!$F2 687
10 TraesCS2D01G170500 chr4A 698492434 698493403 969 False 486.50 773 84.667000 1235 2224 2 chr4A.!!$F3 989
11 TraesCS2D01G170500 chr5D 506209647 506210855 1208 False 1194.00 1194 84.723000 1 1193 1 chr5D.!!$F1 1192
12 TraesCS2D01G170500 chr5D 506167204 506168685 1481 False 681.00 811 83.625000 403 2262 2 chr5D.!!$F2 1859
13 TraesCS2D01G170500 chr3B 755206285 755208330 2045 False 837.00 1055 84.019000 83 2142 2 chr3B.!!$F1 2059
14 TraesCS2D01G170500 chr7D 30395290 30397012 1722 False 764.50 902 83.788500 534 2224 2 chr7D.!!$F1 1690
15 TraesCS2D01G170500 chr5B 636928905 636929711 806 False 773.00 773 84.282000 403 1193 1 chr5B.!!$F1 790
16 TraesCS2D01G170500 chr7A 30876241 30879243 3002 False 492.00 669 83.772667 534 2223 3 chr7A.!!$F1 1689
17 TraesCS2D01G170500 chr7A 217229869 217230533 664 True 279.00 279 74.738000 525 1176 1 chr7A.!!$R1 651
18 TraesCS2D01G170500 chr3A 701897513 701898289 776 False 662.00 662 82.487000 1 767 1 chr3A.!!$F1 766
19 TraesCS2D01G170500 chr3D 568521440 568522318 878 True 432.00 531 85.206000 3 905 2 chr3D.!!$R2 902
20 TraesCS2D01G170500 chr4D 65860591 65861191 600 False 322.00 322 77.176000 601 1181 1 chr4D.!!$F1 580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
204 212 0.534412 AAGGCTGTCATCGAGGTCAG 59.466 55.000 17.91 17.91 0.0 3.51 F
1042 4053 1.450312 GACCAGCCATTCGACAGGG 60.450 63.158 4.63 0.00 0.0 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1202 4216 1.077429 GGAGGAGGTGCATGTTCCC 60.077 63.158 9.65 0.0 0.0 3.97 R
3031 7903 0.322456 TGGTGTTATCTGTGCTGCCC 60.322 55.000 0.00 0.0 0.0 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 4.522789 GGTTCCCAAGTTCAAGCTTGATTA 59.477 41.667 28.89 13.32 46.34 1.75
79 80 1.424493 GCAGCTTCGTCGGAATCCTG 61.424 60.000 0.00 0.00 35.85 3.86
88 89 1.137086 GTCGGAATCCTGAAGCAGCTA 59.863 52.381 0.00 0.00 0.00 3.32
140 148 2.509336 CGTCGGACATGGTGGAGC 60.509 66.667 9.10 0.00 0.00 4.70
204 212 0.534412 AAGGCTGTCATCGAGGTCAG 59.466 55.000 17.91 17.91 0.00 3.51
247 255 1.947212 GCTGTCACCATGATGAGTGCA 60.947 52.381 8.82 8.86 33.90 4.57
424 444 2.333581 CAACGGAAACAACGGGGC 59.666 61.111 0.00 0.00 35.23 5.80
1042 4053 1.450312 GACCAGCCATTCGACAGGG 60.450 63.158 4.63 0.00 0.00 4.45
1128 4142 1.875963 CTGGAAGCCGCAATTCGTT 59.124 52.632 0.00 0.00 36.19 3.85
1320 4427 1.848886 ATGGGGGTCCGTCTCCAAAC 61.849 60.000 0.00 0.00 38.77 2.93
1546 4716 0.318120 CCCCCGCCATAATGCATTTC 59.682 55.000 18.75 4.13 0.00 2.17
1668 6123 3.009916 AGTTCTCCATGTGCATCTTCCTT 59.990 43.478 0.00 0.00 0.00 3.36
2279 6858 6.127897 GCTTTGTGGCTCAGTTTGATTATACT 60.128 38.462 0.00 0.00 0.00 2.12
2286 6865 6.931281 GGCTCAGTTTGATTATACTAGATGCA 59.069 38.462 0.00 0.00 0.00 3.96
2289 6868 9.149225 CTCAGTTTGATTATACTAGATGCATCC 57.851 37.037 23.06 5.58 0.00 3.51
2315 6894 2.946564 GCGCAAGAAGCCAATTAAACT 58.053 42.857 0.30 0.00 41.38 2.66
2334 6913 8.718102 TTAAACTTATATCTCAGGTGTCTTGC 57.282 34.615 0.00 0.00 0.00 4.01
2385 6964 6.829229 ATTGTGCAAGATGAGAAAGAATCA 57.171 33.333 0.00 0.00 0.00 2.57
2386 6965 5.874895 TGTGCAAGATGAGAAAGAATCAG 57.125 39.130 0.00 0.00 0.00 2.90
2387 6966 4.155462 TGTGCAAGATGAGAAAGAATCAGC 59.845 41.667 0.00 0.00 33.29 4.26
2388 6967 4.155462 GTGCAAGATGAGAAAGAATCAGCA 59.845 41.667 0.00 0.00 35.55 4.41
2389 6968 4.395231 TGCAAGATGAGAAAGAATCAGCAG 59.605 41.667 0.00 0.00 35.55 4.24
2390 6969 4.201930 GCAAGATGAGAAAGAATCAGCAGG 60.202 45.833 0.00 0.00 35.55 4.85
2391 6970 3.543665 AGATGAGAAAGAATCAGCAGGC 58.456 45.455 0.00 0.00 35.55 4.85
2392 6971 2.865119 TGAGAAAGAATCAGCAGGCA 57.135 45.000 0.00 0.00 0.00 4.75
2393 6972 3.144657 TGAGAAAGAATCAGCAGGCAA 57.855 42.857 0.00 0.00 0.00 4.52
2394 6973 3.489355 TGAGAAAGAATCAGCAGGCAAA 58.511 40.909 0.00 0.00 0.00 3.68
2395 6974 4.084287 TGAGAAAGAATCAGCAGGCAAAT 58.916 39.130 0.00 0.00 0.00 2.32
2396 6975 4.525487 TGAGAAAGAATCAGCAGGCAAATT 59.475 37.500 0.00 0.00 0.00 1.82
2397 6976 5.069501 AGAAAGAATCAGCAGGCAAATTC 57.930 39.130 9.36 9.36 0.00 2.17
2398 6977 4.525487 AGAAAGAATCAGCAGGCAAATTCA 59.475 37.500 16.05 0.00 31.90 2.57
2399 6978 5.187186 AGAAAGAATCAGCAGGCAAATTCAT 59.813 36.000 16.05 6.17 31.90 2.57
2400 6979 4.386867 AGAATCAGCAGGCAAATTCATG 57.613 40.909 16.05 0.00 31.90 3.07
2401 6980 3.767673 AGAATCAGCAGGCAAATTCATGT 59.232 39.130 16.05 0.11 31.90 3.21
2402 6981 4.951715 AGAATCAGCAGGCAAATTCATGTA 59.048 37.500 16.05 0.00 31.90 2.29
2403 6982 4.644103 ATCAGCAGGCAAATTCATGTAC 57.356 40.909 0.00 0.00 0.00 2.90
2404 6983 3.419943 TCAGCAGGCAAATTCATGTACA 58.580 40.909 0.00 0.00 0.00 2.90
2405 6984 4.018490 TCAGCAGGCAAATTCATGTACAT 58.982 39.130 1.41 1.41 0.00 2.29
2406 6985 4.096833 TCAGCAGGCAAATTCATGTACATC 59.903 41.667 5.07 0.00 0.00 3.06
2407 6986 4.097437 CAGCAGGCAAATTCATGTACATCT 59.903 41.667 5.07 0.00 0.00 2.90
2408 6987 4.097437 AGCAGGCAAATTCATGTACATCTG 59.903 41.667 5.07 8.76 0.00 2.90
2409 6988 4.142315 GCAGGCAAATTCATGTACATCTGT 60.142 41.667 5.07 0.00 0.00 3.41
2410 6989 5.337554 CAGGCAAATTCATGTACATCTGTG 58.662 41.667 5.07 0.00 0.00 3.66
2411 6990 4.107622 GGCAAATTCATGTACATCTGTGC 58.892 43.478 5.07 10.27 0.00 4.57
2455 7323 0.107410 AGGCAGTTCACACCGTCAAA 60.107 50.000 0.00 0.00 0.00 2.69
2458 7326 2.450160 GCAGTTCACACCGTCAAAAAG 58.550 47.619 0.00 0.00 0.00 2.27
2518 7386 6.539649 TTATCTCGTTTTTCTGAACCACTG 57.460 37.500 0.00 0.00 0.00 3.66
2528 7396 1.998315 CTGAACCACTGAATCTGCGAG 59.002 52.381 0.00 0.00 0.00 5.03
2722 7591 7.122501 TCTGAATGCATGCCTAGTTTGAAAATA 59.877 33.333 16.68 0.00 0.00 1.40
2900 7772 5.923204 AGAAGATCATGTACCATGGTTCTC 58.077 41.667 25.38 14.37 0.00 2.87
3009 7881 6.114767 AGTTTGTGATTGCACCAAAGAAATT 58.885 32.000 0.00 0.00 44.51 1.82
3025 7897 8.246871 CCAAAGAAATTATCTCCAAGGAAGAAC 58.753 37.037 0.00 0.00 37.42 3.01
3031 7903 1.699634 TCTCCAAGGAAGAACACCAGG 59.300 52.381 0.00 0.00 0.00 4.45
3040 7912 3.790416 GAACACCAGGGGCAGCACA 62.790 63.158 0.00 0.00 0.00 4.57
3048 7920 0.035056 AGGGGCAGCACAGATAACAC 60.035 55.000 0.00 0.00 0.00 3.32
3079 7951 2.025037 AGGGAACAAATCAGCCATAGCA 60.025 45.455 0.00 0.00 43.56 3.49
3080 7952 2.099756 GGGAACAAATCAGCCATAGCAC 59.900 50.000 0.00 0.00 43.56 4.40
3081 7953 2.754552 GGAACAAATCAGCCATAGCACA 59.245 45.455 0.00 0.00 43.56 4.57
3082 7954 3.193267 GGAACAAATCAGCCATAGCACAA 59.807 43.478 0.00 0.00 43.56 3.33
3083 7955 4.142093 GGAACAAATCAGCCATAGCACAAT 60.142 41.667 0.00 0.00 43.56 2.71
3084 7956 5.410355 AACAAATCAGCCATAGCACAATT 57.590 34.783 0.00 0.00 43.56 2.32
3085 7957 4.751060 ACAAATCAGCCATAGCACAATTG 58.249 39.130 3.24 3.24 43.56 2.32
3111 7983 8.015658 GTGTTGTCATAGACCTACAAAATGAAC 58.984 37.037 0.00 0.00 35.08 3.18
3119 7991 6.299141 AGACCTACAAAATGAACACATGAGT 58.701 36.000 0.00 0.00 0.00 3.41
3137 8009 7.065085 CACATGAGTAATAAGGTCCAAGAACTG 59.935 40.741 0.00 0.00 26.06 3.16
3138 8010 6.928348 TGAGTAATAAGGTCCAAGAACTGA 57.072 37.500 0.00 0.00 26.06 3.41
3139 8011 7.311092 TGAGTAATAAGGTCCAAGAACTGAA 57.689 36.000 0.00 0.00 26.06 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 2.177038 CGACGAAGCTGCTCGAGT 59.823 61.111 21.95 14.15 41.44 4.18
64 65 1.281899 GCTTCAGGATTCCGACGAAG 58.718 55.000 19.85 19.85 34.59 3.79
65 66 0.606096 TGCTTCAGGATTCCGACGAA 59.394 50.000 0.00 1.56 0.00 3.85
154 162 0.234884 CTCGAACGACCAAAGGCAAC 59.765 55.000 0.00 0.00 0.00 4.17
204 212 2.184579 CTTCCGTCCCTTCCTCGC 59.815 66.667 0.00 0.00 0.00 5.03
257 265 1.512996 GGCATCATCATGGGAGCACG 61.513 60.000 0.00 0.00 0.00 5.34
401 421 1.187715 CGTTGTTTCCGTTGCACAAG 58.812 50.000 0.00 0.00 31.10 3.16
424 444 1.687494 GCCTCTGCTCGTTAAGTGCG 61.687 60.000 0.00 0.00 41.88 5.34
1009 1079 2.671682 GTCCTCCCACTTGCCCTC 59.328 66.667 0.00 0.00 0.00 4.30
1202 4216 1.077429 GGAGGAGGTGCATGTTCCC 60.077 63.158 9.65 0.00 0.00 3.97
1320 4427 1.408453 GGGGTCCGGTGGGAAGATAG 61.408 65.000 0.00 0.00 46.08 2.08
1388 4525 2.032681 GGGCGTATGAGATGGGGC 59.967 66.667 0.00 0.00 0.00 5.80
2123 6666 2.778270 ACTTATTACTCCTTGGAGGGGC 59.222 50.000 19.51 0.00 40.45 5.80
2279 6858 0.389817 GCGCCATACGGATGCATCTA 60.390 55.000 25.28 12.00 43.93 1.98
2286 6865 1.160329 GCTTCTTGCGCCATACGGAT 61.160 55.000 4.18 0.00 43.70 4.18
2289 6868 2.709475 GGCTTCTTGCGCCATACG 59.291 61.111 4.18 0.00 46.77 3.06
2315 6894 5.939764 ACAGCAAGACACCTGAGATATAA 57.060 39.130 0.00 0.00 33.40 0.98
2362 6941 6.625300 GCTGATTCTTTCTCATCTTGCACAAT 60.625 38.462 0.00 0.00 0.00 2.71
2373 6952 2.865119 TGCCTGCTGATTCTTTCTCA 57.135 45.000 0.00 0.00 0.00 3.27
2374 6953 4.715527 ATTTGCCTGCTGATTCTTTCTC 57.284 40.909 0.00 0.00 0.00 2.87
2375 6954 4.525487 TGAATTTGCCTGCTGATTCTTTCT 59.475 37.500 14.48 0.00 31.48 2.52
2376 6955 4.813027 TGAATTTGCCTGCTGATTCTTTC 58.187 39.130 14.48 0.00 31.48 2.62
2378 6957 4.222145 ACATGAATTTGCCTGCTGATTCTT 59.778 37.500 0.00 8.78 31.48 2.52
2379 6958 3.767673 ACATGAATTTGCCTGCTGATTCT 59.232 39.130 0.00 3.74 31.48 2.40
2380 6959 4.119442 ACATGAATTTGCCTGCTGATTC 57.881 40.909 0.00 9.56 0.00 2.52
2381 6960 4.463539 TGTACATGAATTTGCCTGCTGATT 59.536 37.500 0.00 0.00 0.00 2.57
2383 6962 3.419943 TGTACATGAATTTGCCTGCTGA 58.580 40.909 0.00 0.00 0.00 4.26
2384 6963 3.853831 TGTACATGAATTTGCCTGCTG 57.146 42.857 0.00 0.00 0.00 4.41
2385 6964 4.097437 CAGATGTACATGAATTTGCCTGCT 59.903 41.667 14.43 0.00 0.00 4.24
2386 6965 4.142315 ACAGATGTACATGAATTTGCCTGC 60.142 41.667 14.43 0.00 0.00 4.85
2387 6966 5.337554 CACAGATGTACATGAATTTGCCTG 58.662 41.667 14.43 13.38 0.00 4.85
2388 6967 4.142315 GCACAGATGTACATGAATTTGCCT 60.142 41.667 14.43 0.00 0.00 4.75
2389 6968 4.107622 GCACAGATGTACATGAATTTGCC 58.892 43.478 14.43 0.00 0.00 4.52
2390 6969 4.796830 CAGCACAGATGTACATGAATTTGC 59.203 41.667 14.43 13.06 0.00 3.68
2391 6970 6.185852 TCAGCACAGATGTACATGAATTTG 57.814 37.500 14.43 6.27 0.00 2.32
2392 6971 6.822667 TTCAGCACAGATGTACATGAATTT 57.177 33.333 14.43 0.00 0.00 1.82
2393 6972 6.432162 AGTTTCAGCACAGATGTACATGAATT 59.568 34.615 14.43 0.00 0.00 2.17
2394 6973 5.942236 AGTTTCAGCACAGATGTACATGAAT 59.058 36.000 14.43 0.00 0.00 2.57
2395 6974 5.308014 AGTTTCAGCACAGATGTACATGAA 58.692 37.500 14.43 7.39 0.00 2.57
2396 6975 4.898320 AGTTTCAGCACAGATGTACATGA 58.102 39.130 14.43 0.46 0.00 3.07
2397 6976 6.147656 TGTTAGTTTCAGCACAGATGTACATG 59.852 38.462 14.43 3.72 0.00 3.21
2398 6977 6.230472 TGTTAGTTTCAGCACAGATGTACAT 58.770 36.000 8.43 8.43 0.00 2.29
2399 6978 5.606505 TGTTAGTTTCAGCACAGATGTACA 58.393 37.500 0.00 0.00 0.00 2.90
2400 6979 6.539649 TTGTTAGTTTCAGCACAGATGTAC 57.460 37.500 0.00 0.00 0.00 2.90
2401 6980 6.017440 GGTTTGTTAGTTTCAGCACAGATGTA 60.017 38.462 0.00 0.00 0.00 2.29
2402 6981 5.221048 GGTTTGTTAGTTTCAGCACAGATGT 60.221 40.000 0.00 0.00 0.00 3.06
2403 6982 5.215160 GGTTTGTTAGTTTCAGCACAGATG 58.785 41.667 0.00 0.00 0.00 2.90
2404 6983 4.024048 CGGTTTGTTAGTTTCAGCACAGAT 60.024 41.667 0.00 0.00 0.00 2.90
2405 6984 3.311322 CGGTTTGTTAGTTTCAGCACAGA 59.689 43.478 0.00 0.00 0.00 3.41
2406 6985 3.548014 CCGGTTTGTTAGTTTCAGCACAG 60.548 47.826 0.00 0.00 0.00 3.66
2407 6986 2.356382 CCGGTTTGTTAGTTTCAGCACA 59.644 45.455 0.00 0.00 0.00 4.57
2408 6987 2.356695 ACCGGTTTGTTAGTTTCAGCAC 59.643 45.455 0.00 0.00 0.00 4.40
2409 6988 2.614983 GACCGGTTTGTTAGTTTCAGCA 59.385 45.455 9.42 0.00 0.00 4.41
2410 6989 2.876550 AGACCGGTTTGTTAGTTTCAGC 59.123 45.455 9.42 0.00 0.00 4.26
2411 6990 3.303791 GCAGACCGGTTTGTTAGTTTCAG 60.304 47.826 24.55 0.00 0.00 3.02
2455 7323 3.550437 ACCTAGCGATGCTGAATCTTT 57.450 42.857 0.70 0.00 40.10 2.52
2458 7326 4.448537 AGATACCTAGCGATGCTGAATC 57.551 45.455 0.70 0.00 40.10 2.52
2507 7375 1.618343 TCGCAGATTCAGTGGTTCAGA 59.382 47.619 0.00 0.00 0.00 3.27
2518 7386 2.289002 CCAATACAAGGCTCGCAGATTC 59.711 50.000 0.00 0.00 33.89 2.52
2528 7396 5.582689 AGCAGAAAATACCAATACAAGGC 57.417 39.130 0.00 0.00 0.00 4.35
2690 7558 7.408756 AACTAGGCATGCATTCAGATAAAAA 57.591 32.000 21.36 0.00 0.00 1.94
2695 7563 4.529897 TCAAACTAGGCATGCATTCAGAT 58.470 39.130 21.36 0.00 0.00 2.90
2710 7579 9.935241 TTGCCAATGCTTAATATTTTCAAACTA 57.065 25.926 0.00 0.00 38.71 2.24
2722 7591 2.937799 CGCCAAATTGCCAATGCTTAAT 59.062 40.909 0.00 0.00 38.71 1.40
2743 7612 3.382855 TGAACAACAGATTTGCATGTGC 58.617 40.909 0.00 0.00 42.50 4.57
2900 7772 9.463443 CTAAAATTTCCAAAACTACAGAAGGTG 57.537 33.333 0.00 0.00 0.00 4.00
2976 7848 3.243468 TGCAATCACAAACTCCACACATG 60.243 43.478 0.00 0.00 0.00 3.21
3009 7881 3.519510 CCTGGTGTTCTTCCTTGGAGATA 59.480 47.826 0.00 0.00 0.00 1.98
3025 7897 1.913951 TATCTGTGCTGCCCCTGGTG 61.914 60.000 0.00 0.00 0.00 4.17
3031 7903 0.322456 TGGTGTTATCTGTGCTGCCC 60.322 55.000 0.00 0.00 0.00 5.36
3040 7912 5.319043 TCCCTCTTTTGTTGGTGTTATCT 57.681 39.130 0.00 0.00 0.00 1.98
3048 7920 5.275067 TGATTTGTTCCCTCTTTTGTTGG 57.725 39.130 0.00 0.00 0.00 3.77
3079 7951 6.530120 TGTAGGTCTATGACAACACAATTGT 58.470 36.000 4.92 4.92 37.67 2.71
3080 7952 7.433708 TTGTAGGTCTATGACAACACAATTG 57.566 36.000 3.24 3.24 32.51 2.32
3081 7953 8.458573 TTTTGTAGGTCTATGACAACACAATT 57.541 30.769 9.85 0.00 33.00 2.32
3082 7954 8.514594 CATTTTGTAGGTCTATGACAACACAAT 58.485 33.333 9.85 9.50 34.18 2.71
3083 7955 7.717436 TCATTTTGTAGGTCTATGACAACACAA 59.283 33.333 0.07 4.16 32.51 3.33
3084 7956 7.220740 TCATTTTGTAGGTCTATGACAACACA 58.779 34.615 0.07 0.00 32.51 3.72
3085 7957 7.667043 TCATTTTGTAGGTCTATGACAACAC 57.333 36.000 0.07 0.00 32.51 3.32
3111 7983 7.065085 CAGTTCTTGGACCTTATTACTCATGTG 59.935 40.741 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.