Multiple sequence alignment - TraesCS2D01G169700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G169700 chr2D 100.000 4763 0 0 1 4763 113507061 113502299 0.000000e+00 8796.0
1 TraesCS2D01G169700 chr2D 91.860 86 7 0 3599 3684 113503409 113503324 2.330000e-23 121.0
2 TraesCS2D01G169700 chr2D 91.860 86 7 0 3653 3738 113503463 113503378 2.330000e-23 121.0
3 TraesCS2D01G169700 chr2A 94.241 3490 110 23 1292 4763 115122558 115119142 0.000000e+00 5247.0
4 TraesCS2D01G169700 chr2A 82.897 497 77 6 121 612 545734403 545733910 1.570000e-119 440.0
5 TraesCS2D01G169700 chr2A 92.562 121 8 1 1 120 115137775 115137655 6.340000e-39 172.0
6 TraesCS2D01G169700 chr2A 94.915 59 3 0 3680 3738 115120253 115120195 5.080000e-15 93.5
7 TraesCS2D01G169700 chr2B 89.306 1945 104 37 2837 4763 164089707 164087849 0.000000e+00 2344.0
8 TraesCS2D01G169700 chr2B 91.498 1035 68 10 1284 2317 164091181 164090166 0.000000e+00 1406.0
9 TraesCS2D01G169700 chr2B 90.388 593 48 5 120 711 653764738 653764154 0.000000e+00 771.0
10 TraesCS2D01G169700 chr2B 93.053 475 23 4 792 1259 164091652 164091181 0.000000e+00 686.0
11 TraesCS2D01G169700 chr2B 88.602 465 17 5 2347 2777 164090170 164089708 2.520000e-147 532.0
12 TraesCS2D01G169700 chr7A 92.399 592 45 0 120 711 595945873 595945282 0.000000e+00 845.0
13 TraesCS2D01G169700 chr7B 91.737 593 40 5 120 712 719460356 719460939 0.000000e+00 815.0
14 TraesCS2D01G169700 chr7B 87.899 595 43 9 120 711 68044440 68043872 0.000000e+00 673.0
15 TraesCS2D01G169700 chr6D 90.686 612 42 10 120 727 207236290 207236890 0.000000e+00 800.0
16 TraesCS2D01G169700 chr4D 90.541 592 48 3 120 711 437046232 437046815 0.000000e+00 776.0
17 TraesCS2D01G169700 chr4D 89.441 161 16 1 1777 1936 74079504 74079344 8.080000e-48 202.0
18 TraesCS2D01G169700 chr5A 89.899 594 49 6 120 711 483700309 483700893 0.000000e+00 754.0
19 TraesCS2D01G169700 chrUn 88.702 593 56 3 121 712 79100410 79099828 0.000000e+00 713.0
20 TraesCS2D01G169700 chrUn 87.654 162 19 1 1773 1934 126680474 126680634 2.260000e-43 187.0
21 TraesCS2D01G169700 chr1D 90.024 411 33 3 303 711 198046601 198047005 4.220000e-145 525.0
22 TraesCS2D01G169700 chr3A 84.940 498 64 7 121 613 706554224 706554715 1.190000e-135 494.0
23 TraesCS2D01G169700 chr1A 90.260 154 15 0 1777 1930 155857859 155857706 8.080000e-48 202.0
24 TraesCS2D01G169700 chr1A 86.000 100 7 6 23 116 403603445 403603347 3.030000e-17 100.0
25 TraesCS2D01G169700 chr4B 89.677 155 14 2 1779 1933 510827662 510827814 3.760000e-46 196.0
26 TraesCS2D01G169700 chr4B 88.272 162 16 3 1777 1936 106227561 106227401 1.750000e-44 191.0
27 TraesCS2D01G169700 chr3D 87.654 162 20 0 1770 1931 288550451 288550612 6.290000e-44 189.0
28 TraesCS2D01G169700 chr3D 87.578 161 19 1 1777 1937 441388819 441388660 8.140000e-43 185.0
29 TraesCS2D01G169700 chr1B 86.364 110 11 2 17 122 432609571 432609680 3.010000e-22 117.0
30 TraesCS2D01G169700 chr6B 80.180 111 18 4 14 122 672062266 672062158 3.950000e-11 80.5
31 TraesCS2D01G169700 chr6A 79.032 124 20 6 1 121 592224425 592224305 3.950000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G169700 chr2D 113502299 113507061 4762 True 3012.666667 8796 94.573333 1 4763 3 chr2D.!!$R1 4762
1 TraesCS2D01G169700 chr2A 115119142 115122558 3416 True 2670.250000 5247 94.578000 1292 4763 2 chr2A.!!$R3 3471
2 TraesCS2D01G169700 chr2B 164087849 164091652 3803 True 1242.000000 2344 90.614750 792 4763 4 chr2B.!!$R2 3971
3 TraesCS2D01G169700 chr2B 653764154 653764738 584 True 771.000000 771 90.388000 120 711 1 chr2B.!!$R1 591
4 TraesCS2D01G169700 chr7A 595945282 595945873 591 True 845.000000 845 92.399000 120 711 1 chr7A.!!$R1 591
5 TraesCS2D01G169700 chr7B 719460356 719460939 583 False 815.000000 815 91.737000 120 712 1 chr7B.!!$F1 592
6 TraesCS2D01G169700 chr7B 68043872 68044440 568 True 673.000000 673 87.899000 120 711 1 chr7B.!!$R1 591
7 TraesCS2D01G169700 chr6D 207236290 207236890 600 False 800.000000 800 90.686000 120 727 1 chr6D.!!$F1 607
8 TraesCS2D01G169700 chr4D 437046232 437046815 583 False 776.000000 776 90.541000 120 711 1 chr4D.!!$F1 591
9 TraesCS2D01G169700 chr5A 483700309 483700893 584 False 754.000000 754 89.899000 120 711 1 chr5A.!!$F1 591
10 TraesCS2D01G169700 chrUn 79099828 79100410 582 True 713.000000 713 88.702000 121 712 1 chrUn.!!$R1 591

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
38 39 0.036577 CCACTCCTCAAGTCCTGCTG 60.037 60.0 0.00 0.0 35.45 4.41 F
661 667 0.039618 ATGTTCGGAGGCAAATGGGT 59.960 50.0 0.00 0.0 0.00 4.51 F
750 759 0.105964 GCCGGCCTGTTTTCCTTTTT 59.894 50.0 18.11 0.0 0.00 1.94 F
781 790 0.319900 CCGGCCTGGTATCAAGATCG 60.320 60.0 0.00 0.0 0.00 3.69 F
782 791 0.673985 CGGCCTGGTATCAAGATCGA 59.326 55.0 0.00 0.0 0.00 3.59 F
819 828 0.737367 GAACGGTTAGGCCCACGTAC 60.737 60.0 11.24 0.0 38.79 3.67 F
1531 1547 0.824759 ACAAGTATGAGGACGAGGCC 59.175 55.0 0.00 0.0 0.00 5.19 F
2738 2795 1.292061 TCGTTGTCGTTTTCCCACTG 58.708 50.0 0.00 0.0 38.33 3.66 F
3275 3357 0.248702 GCAGGAGTCGTAGCACTAGC 60.249 60.0 0.00 0.0 42.56 3.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1135 1151 0.610687 GGATTAGAGCAGCCGCCTAT 59.389 55.000 0.00 0.0 39.83 2.57 R
1531 1547 2.093216 GCGATCAACTGCCTTCTGG 58.907 57.895 0.00 0.0 0.00 3.86 R
1720 1739 3.005472 CCAGTAGTCAGGAAAGACGTTGA 59.995 47.826 0.00 0.0 43.24 3.18 R
1968 1989 3.350219 ACATCTAGCAAATGACCGGTT 57.650 42.857 9.42 0.0 0.00 4.44 R
2067 2088 3.356529 AACCATCGATTCCTTTGCTCT 57.643 42.857 0.00 0.0 0.00 4.09 R
2069 2090 3.826157 TCAAAACCATCGATTCCTTTGCT 59.174 39.130 14.00 0.0 0.00 3.91 R
2819 2876 0.168128 GCCCACGTGAAATACAGCAC 59.832 55.000 19.30 0.0 0.00 4.40 R
3636 3740 0.026803 GAGAACGGTCATCATTGCGC 59.973 55.000 1.87 0.0 0.00 6.09 R
4240 4350 2.121129 TCATCATCTCCATCACCAGCA 58.879 47.619 0.00 0.0 0.00 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.672983 TGACTTTGTAAAGAATCATCCACTC 57.327 36.000 11.07 0.00 39.31 3.51
25 26 6.655003 TGACTTTGTAAAGAATCATCCACTCC 59.345 38.462 11.07 0.00 39.31 3.85
26 27 6.784031 ACTTTGTAAAGAATCATCCACTCCT 58.216 36.000 11.07 0.00 39.31 3.69
27 28 6.881602 ACTTTGTAAAGAATCATCCACTCCTC 59.118 38.462 11.07 0.00 39.31 3.71
28 29 6.373005 TTGTAAAGAATCATCCACTCCTCA 57.627 37.500 0.00 0.00 0.00 3.86
29 30 6.373005 TGTAAAGAATCATCCACTCCTCAA 57.627 37.500 0.00 0.00 0.00 3.02
30 31 6.409704 TGTAAAGAATCATCCACTCCTCAAG 58.590 40.000 0.00 0.00 0.00 3.02
31 32 5.511386 AAAGAATCATCCACTCCTCAAGT 57.489 39.130 0.00 0.00 39.44 3.16
32 33 4.751767 AGAATCATCCACTCCTCAAGTC 57.248 45.455 0.00 0.00 35.45 3.01
33 34 3.454082 AGAATCATCCACTCCTCAAGTCC 59.546 47.826 0.00 0.00 35.45 3.85
34 35 2.630889 TCATCCACTCCTCAAGTCCT 57.369 50.000 0.00 0.00 35.45 3.85
35 36 2.182827 TCATCCACTCCTCAAGTCCTG 58.817 52.381 0.00 0.00 35.45 3.86
36 37 0.908198 ATCCACTCCTCAAGTCCTGC 59.092 55.000 0.00 0.00 35.45 4.85
37 38 0.178921 TCCACTCCTCAAGTCCTGCT 60.179 55.000 0.00 0.00 35.45 4.24
38 39 0.036577 CCACTCCTCAAGTCCTGCTG 60.037 60.000 0.00 0.00 35.45 4.41
39 40 0.036577 CACTCCTCAAGTCCTGCTGG 60.037 60.000 2.58 2.58 35.45 4.85
40 41 0.178921 ACTCCTCAAGTCCTGCTGGA 60.179 55.000 8.48 8.48 40.69 3.86
41 42 1.202330 CTCCTCAAGTCCTGCTGGAT 58.798 55.000 16.12 0.00 45.29 3.41
42 43 0.907486 TCCTCAAGTCCTGCTGGATG 59.093 55.000 16.12 10.97 45.29 3.51
43 44 0.907486 CCTCAAGTCCTGCTGGATGA 59.093 55.000 16.12 14.56 45.29 2.92
44 45 1.280133 CCTCAAGTCCTGCTGGATGAA 59.720 52.381 16.12 1.69 45.29 2.57
45 46 2.290514 CCTCAAGTCCTGCTGGATGAAA 60.291 50.000 16.12 2.04 45.29 2.69
46 47 2.746362 CTCAAGTCCTGCTGGATGAAAC 59.254 50.000 16.12 2.94 45.29 2.78
47 48 2.106338 TCAAGTCCTGCTGGATGAAACA 59.894 45.455 16.12 0.00 45.29 2.83
48 49 2.886523 CAAGTCCTGCTGGATGAAACAA 59.113 45.455 16.12 0.00 45.29 2.83
49 50 3.228188 AGTCCTGCTGGATGAAACAAA 57.772 42.857 16.12 0.00 45.29 2.83
50 51 3.565307 AGTCCTGCTGGATGAAACAAAA 58.435 40.909 16.12 0.00 45.29 2.44
51 52 3.960102 AGTCCTGCTGGATGAAACAAAAA 59.040 39.130 16.12 0.00 45.29 1.94
52 53 4.590222 AGTCCTGCTGGATGAAACAAAAAT 59.410 37.500 16.12 0.00 45.29 1.82
53 54 4.687483 GTCCTGCTGGATGAAACAAAAATG 59.313 41.667 16.12 0.00 45.29 2.32
54 55 3.434299 CCTGCTGGATGAAACAAAAATGC 59.566 43.478 2.92 0.00 34.57 3.56
55 56 4.059511 CTGCTGGATGAAACAAAAATGCA 58.940 39.130 0.00 0.00 0.00 3.96
56 57 4.449131 TGCTGGATGAAACAAAAATGCAA 58.551 34.783 0.00 0.00 0.00 4.08
57 58 4.880120 TGCTGGATGAAACAAAAATGCAAA 59.120 33.333 0.00 0.00 0.00 3.68
58 59 5.007823 TGCTGGATGAAACAAAAATGCAAAG 59.992 36.000 0.00 0.00 0.00 2.77
59 60 5.421212 TGGATGAAACAAAAATGCAAAGC 57.579 34.783 0.00 0.00 0.00 3.51
60 61 5.124645 TGGATGAAACAAAAATGCAAAGCT 58.875 33.333 0.00 0.00 0.00 3.74
61 62 6.286758 TGGATGAAACAAAAATGCAAAGCTA 58.713 32.000 0.00 0.00 0.00 3.32
62 63 6.424509 TGGATGAAACAAAAATGCAAAGCTAG 59.575 34.615 0.00 0.00 0.00 3.42
63 64 5.655893 TGAAACAAAAATGCAAAGCTAGC 57.344 34.783 6.62 6.62 0.00 3.42
64 65 4.511082 TGAAACAAAAATGCAAAGCTAGCC 59.489 37.500 12.13 0.00 0.00 3.93
65 66 3.749665 ACAAAAATGCAAAGCTAGCCA 57.250 38.095 12.13 1.96 0.00 4.75
66 67 4.070630 ACAAAAATGCAAAGCTAGCCAA 57.929 36.364 12.13 0.00 0.00 4.52
67 68 4.060205 ACAAAAATGCAAAGCTAGCCAAG 58.940 39.130 12.13 2.01 0.00 3.61
68 69 4.202243 ACAAAAATGCAAAGCTAGCCAAGA 60.202 37.500 12.13 0.00 0.00 3.02
69 70 4.605640 AAAATGCAAAGCTAGCCAAGAA 57.394 36.364 12.13 0.00 0.00 2.52
70 71 3.863142 AATGCAAAGCTAGCCAAGAAG 57.137 42.857 12.13 0.00 0.00 2.85
71 72 2.566833 TGCAAAGCTAGCCAAGAAGA 57.433 45.000 12.13 0.00 0.00 2.87
72 73 2.862541 TGCAAAGCTAGCCAAGAAGAA 58.137 42.857 12.13 0.00 0.00 2.52
73 74 3.424703 TGCAAAGCTAGCCAAGAAGAAT 58.575 40.909 12.13 0.00 0.00 2.40
74 75 3.192001 TGCAAAGCTAGCCAAGAAGAATG 59.808 43.478 12.13 0.00 0.00 2.67
75 76 3.428589 GCAAAGCTAGCCAAGAAGAATGG 60.429 47.826 12.13 0.00 41.08 3.16
76 77 3.728385 AAGCTAGCCAAGAAGAATGGT 57.272 42.857 12.13 0.00 40.23 3.55
77 78 2.996631 AGCTAGCCAAGAAGAATGGTG 58.003 47.619 12.13 0.00 40.23 4.17
78 79 2.307098 AGCTAGCCAAGAAGAATGGTGT 59.693 45.455 12.13 0.00 40.23 4.16
79 80 3.084786 GCTAGCCAAGAAGAATGGTGTT 58.915 45.455 2.29 0.00 40.23 3.32
80 81 3.119708 GCTAGCCAAGAAGAATGGTGTTG 60.120 47.826 2.29 0.00 40.23 3.33
81 82 2.242043 AGCCAAGAAGAATGGTGTTGG 58.758 47.619 0.00 0.00 41.27 3.77
82 83 2.158475 AGCCAAGAAGAATGGTGTTGGA 60.158 45.455 4.65 0.00 40.92 3.53
83 84 2.229784 GCCAAGAAGAATGGTGTTGGAG 59.770 50.000 4.65 0.00 40.92 3.86
84 85 2.229784 CCAAGAAGAATGGTGTTGGAGC 59.770 50.000 0.00 0.00 40.92 4.70
85 86 2.886523 CAAGAAGAATGGTGTTGGAGCA 59.113 45.455 0.00 0.00 36.23 4.26
86 87 3.446442 AGAAGAATGGTGTTGGAGCAT 57.554 42.857 0.00 0.00 44.97 3.79
87 88 4.574674 AGAAGAATGGTGTTGGAGCATA 57.425 40.909 0.00 0.00 42.13 3.14
88 89 4.265073 AGAAGAATGGTGTTGGAGCATAC 58.735 43.478 0.00 0.00 42.13 2.39
89 90 3.719268 AGAATGGTGTTGGAGCATACA 57.281 42.857 0.00 0.00 42.13 2.29
90 91 4.032960 AGAATGGTGTTGGAGCATACAA 57.967 40.909 0.00 0.00 42.13 2.41
91 92 4.012374 AGAATGGTGTTGGAGCATACAAG 58.988 43.478 0.00 0.00 42.13 3.16
92 93 2.198827 TGGTGTTGGAGCATACAAGG 57.801 50.000 0.00 0.00 0.00 3.61
93 94 1.702401 TGGTGTTGGAGCATACAAGGA 59.298 47.619 0.00 0.00 0.00 3.36
94 95 2.107378 TGGTGTTGGAGCATACAAGGAA 59.893 45.455 0.00 0.00 0.00 3.36
95 96 2.749621 GGTGTTGGAGCATACAAGGAAG 59.250 50.000 0.00 0.00 0.00 3.46
96 97 3.559171 GGTGTTGGAGCATACAAGGAAGA 60.559 47.826 0.00 0.00 0.00 2.87
97 98 3.686726 GTGTTGGAGCATACAAGGAAGAG 59.313 47.826 0.00 0.00 0.00 2.85
98 99 3.327757 TGTTGGAGCATACAAGGAAGAGT 59.672 43.478 0.00 0.00 0.00 3.24
99 100 4.202461 TGTTGGAGCATACAAGGAAGAGTT 60.202 41.667 0.00 0.00 0.00 3.01
100 101 3.942829 TGGAGCATACAAGGAAGAGTTG 58.057 45.455 0.00 0.00 0.00 3.16
101 102 3.582647 TGGAGCATACAAGGAAGAGTTGA 59.417 43.478 0.00 0.00 0.00 3.18
102 103 4.225942 TGGAGCATACAAGGAAGAGTTGAT 59.774 41.667 0.00 0.00 0.00 2.57
103 104 5.189180 GGAGCATACAAGGAAGAGTTGATT 58.811 41.667 0.00 0.00 0.00 2.57
104 105 5.065731 GGAGCATACAAGGAAGAGTTGATTG 59.934 44.000 0.00 0.00 0.00 2.67
105 106 4.397417 AGCATACAAGGAAGAGTTGATTGC 59.603 41.667 0.00 0.00 36.98 3.56
106 107 4.728882 GCATACAAGGAAGAGTTGATTGCG 60.729 45.833 0.00 0.00 31.66 4.85
107 108 3.126001 ACAAGGAAGAGTTGATTGCGA 57.874 42.857 0.00 0.00 0.00 5.10
108 109 2.808543 ACAAGGAAGAGTTGATTGCGAC 59.191 45.455 0.00 0.00 0.00 5.19
109 110 1.714794 AGGAAGAGTTGATTGCGACG 58.285 50.000 0.00 0.00 33.42 5.12
110 111 0.721718 GGAAGAGTTGATTGCGACGG 59.278 55.000 0.00 0.00 33.42 4.79
111 112 1.429463 GAAGAGTTGATTGCGACGGT 58.571 50.000 0.00 0.00 33.42 4.83
112 113 1.126846 GAAGAGTTGATTGCGACGGTG 59.873 52.381 0.00 0.00 33.42 4.94
113 114 0.670546 AGAGTTGATTGCGACGGTGG 60.671 55.000 0.00 0.00 33.42 4.61
114 115 0.669318 GAGTTGATTGCGACGGTGGA 60.669 55.000 0.00 0.00 33.42 4.02
115 116 0.670546 AGTTGATTGCGACGGTGGAG 60.671 55.000 0.00 0.00 33.42 3.86
116 117 1.375396 TTGATTGCGACGGTGGAGG 60.375 57.895 0.00 0.00 0.00 4.30
117 118 2.107041 TTGATTGCGACGGTGGAGGT 62.107 55.000 0.00 0.00 0.00 3.85
118 119 2.047274 ATTGCGACGGTGGAGGTG 60.047 61.111 0.00 0.00 0.00 4.00
163 164 0.678950 TCCGCATTGACACACTGAGA 59.321 50.000 0.00 0.00 0.00 3.27
177 178 0.461548 CTGAGATAGGCCGTTGCTCA 59.538 55.000 16.17 16.17 37.74 4.26
347 350 4.794278 TCCGAAGCAACAAGTAGATGTA 57.206 40.909 0.00 0.00 32.02 2.29
359 362 4.965200 AGTAGATGTAAAGATGGAGGCC 57.035 45.455 0.00 0.00 0.00 5.19
368 371 2.447379 ATGGAGGCCCGAGAGCAT 60.447 61.111 0.00 0.00 34.29 3.79
477 482 0.537653 AGGAGGAAGAAAGGCTACGC 59.462 55.000 0.00 0.00 0.00 4.42
524 529 4.012374 AGCAAGGTAATGAGGATGTTGTG 58.988 43.478 0.00 0.00 0.00 3.33
603 609 5.844004 TCTGTCCACAAGTCTACTCTTTTC 58.156 41.667 0.00 0.00 0.00 2.29
641 647 6.349860 GCCGAATACTTTGTCCTACCAATTTT 60.350 38.462 0.00 0.00 0.00 1.82
661 667 0.039618 ATGTTCGGAGGCAAATGGGT 59.960 50.000 0.00 0.00 0.00 4.51
674 683 4.100808 GGCAAATGGGTATGCAAGGATTTA 59.899 41.667 0.00 0.00 44.32 1.40
712 721 3.483574 CGCACAGGTATTTTTGCTAGTCG 60.484 47.826 0.00 0.00 32.56 4.18
713 722 3.727970 GCACAGGTATTTTTGCTAGTCGC 60.728 47.826 0.00 0.00 39.77 5.19
725 734 3.188895 GCTAGTCGCAAACAAAAGAGG 57.811 47.619 0.00 0.00 38.92 3.69
726 735 2.806244 GCTAGTCGCAAACAAAAGAGGA 59.194 45.455 0.00 0.00 38.92 3.71
727 736 3.437049 GCTAGTCGCAAACAAAAGAGGAT 59.563 43.478 0.00 0.00 38.92 3.24
728 737 4.436183 GCTAGTCGCAAACAAAAGAGGATC 60.436 45.833 0.00 0.00 38.92 3.36
729 738 2.480419 AGTCGCAAACAAAAGAGGATCG 59.520 45.455 0.00 0.00 42.67 3.69
730 739 1.804151 TCGCAAACAAAAGAGGATCGG 59.196 47.619 0.00 0.00 42.67 4.18
731 740 1.135689 CGCAAACAAAAGAGGATCGGG 60.136 52.381 0.00 0.00 42.67 5.14
732 741 1.402852 GCAAACAAAAGAGGATCGGGC 60.403 52.381 0.00 0.00 42.67 6.13
733 742 1.202348 CAAACAAAAGAGGATCGGGCC 59.798 52.381 0.00 0.00 42.67 5.80
734 743 0.676782 AACAAAAGAGGATCGGGCCG 60.677 55.000 22.51 22.51 42.67 6.13
735 744 1.819632 CAAAAGAGGATCGGGCCGG 60.820 63.158 27.98 7.65 42.67 6.13
736 745 3.699134 AAAAGAGGATCGGGCCGGC 62.699 63.158 27.98 21.18 42.67 6.13
742 751 4.796495 GATCGGGCCGGCCTGTTT 62.796 66.667 45.22 35.29 42.88 2.83
743 752 4.360405 ATCGGGCCGGCCTGTTTT 62.360 61.111 45.22 30.97 42.88 2.43
746 755 4.678743 GGGCCGGCCTGTTTTCCT 62.679 66.667 42.70 0.00 36.10 3.36
747 756 2.600470 GGCCGGCCTGTTTTCCTT 60.600 61.111 38.76 0.00 0.00 3.36
748 757 2.207229 GGCCGGCCTGTTTTCCTTT 61.207 57.895 38.76 0.00 0.00 3.11
749 758 1.745890 GCCGGCCTGTTTTCCTTTT 59.254 52.632 18.11 0.00 0.00 2.27
750 759 0.105964 GCCGGCCTGTTTTCCTTTTT 59.894 50.000 18.11 0.00 0.00 1.94
770 779 4.884668 TTTAGATAATAGTCCGGCCTGG 57.115 45.455 0.00 3.90 40.09 4.45
771 780 2.400467 AGATAATAGTCCGGCCTGGT 57.600 50.000 12.46 0.00 39.52 4.00
772 781 3.537795 AGATAATAGTCCGGCCTGGTA 57.462 47.619 12.46 1.02 39.52 3.25
773 782 4.062490 AGATAATAGTCCGGCCTGGTAT 57.938 45.455 12.46 0.00 39.52 2.73
774 783 4.024670 AGATAATAGTCCGGCCTGGTATC 58.975 47.826 12.46 2.24 39.52 2.24
775 784 2.097110 AATAGTCCGGCCTGGTATCA 57.903 50.000 12.46 0.00 39.52 2.15
776 785 2.097110 ATAGTCCGGCCTGGTATCAA 57.903 50.000 12.46 0.00 39.52 2.57
777 786 1.410004 TAGTCCGGCCTGGTATCAAG 58.590 55.000 12.46 0.00 39.52 3.02
778 787 0.325296 AGTCCGGCCTGGTATCAAGA 60.325 55.000 12.46 0.00 39.52 3.02
779 788 0.759346 GTCCGGCCTGGTATCAAGAT 59.241 55.000 12.46 0.00 39.52 2.40
780 789 1.048601 TCCGGCCTGGTATCAAGATC 58.951 55.000 12.46 0.00 39.52 2.75
781 790 0.319900 CCGGCCTGGTATCAAGATCG 60.320 60.000 0.00 0.00 0.00 3.69
782 791 0.673985 CGGCCTGGTATCAAGATCGA 59.326 55.000 0.00 0.00 0.00 3.59
783 792 1.273606 CGGCCTGGTATCAAGATCGAT 59.726 52.381 0.00 0.00 0.00 3.59
784 793 2.672478 CGGCCTGGTATCAAGATCGATC 60.672 54.545 17.91 17.91 0.00 3.69
785 794 2.600731 GCCTGGTATCAAGATCGATCG 58.399 52.381 19.33 9.36 0.00 3.69
786 795 2.600731 CCTGGTATCAAGATCGATCGC 58.399 52.381 19.33 7.08 0.00 4.58
787 796 2.230025 CCTGGTATCAAGATCGATCGCT 59.770 50.000 19.33 0.00 0.00 4.93
788 797 3.305676 CCTGGTATCAAGATCGATCGCTT 60.306 47.826 19.33 6.18 0.00 4.68
789 798 4.302455 CTGGTATCAAGATCGATCGCTTT 58.698 43.478 19.33 6.18 0.00 3.51
790 799 5.447624 TGGTATCAAGATCGATCGCTTTA 57.552 39.130 19.33 8.16 0.00 1.85
798 807 3.309954 AGATCGATCGCTTTAAAACAGGC 59.690 43.478 19.33 0.00 0.00 4.85
816 825 2.812178 CGAACGGTTAGGCCCACG 60.812 66.667 0.00 1.04 0.00 4.94
817 826 2.344872 GAACGGTTAGGCCCACGT 59.655 61.111 0.00 1.80 41.88 4.49
818 827 1.591183 GAACGGTTAGGCCCACGTA 59.409 57.895 11.24 0.00 38.79 3.57
819 828 0.737367 GAACGGTTAGGCCCACGTAC 60.737 60.000 11.24 0.00 38.79 3.67
820 829 2.171209 AACGGTTAGGCCCACGTACC 62.171 60.000 11.24 5.81 38.79 3.34
821 830 2.586245 GGTTAGGCCCACGTACCC 59.414 66.667 0.00 0.00 0.00 3.69
863 872 1.069935 GCCCTAGAAGGATCGGCAC 59.930 63.158 0.00 0.00 37.67 5.01
873 882 1.026718 GGATCGGCACCTTCTTGTGG 61.027 60.000 0.00 0.00 36.73 4.17
880 889 2.391130 ACCTTCTTGTGGCCACCCA 61.391 57.895 32.62 18.39 39.32 4.51
918 929 1.583967 CCACATCTCGTCGCTCGTC 60.584 63.158 0.00 0.00 40.80 4.20
919 930 1.930188 CACATCTCGTCGCTCGTCG 60.930 63.158 2.80 2.80 40.80 5.12
1082 1098 3.659786 TCAACATCACCTTCCGTAAGTG 58.340 45.455 0.00 0.00 0.00 3.16
1083 1099 3.322541 TCAACATCACCTTCCGTAAGTGA 59.677 43.478 0.00 0.00 31.70 3.41
1086 1102 0.971386 TCACCTTCCGTAAGTGACCC 59.029 55.000 0.00 0.00 0.00 4.46
1089 1105 0.981943 CCTTCCGTAAGTGACCCCTT 59.018 55.000 0.00 0.00 0.00 3.95
1118 1134 2.716017 CCGCGCTCTTCCCTTCTCT 61.716 63.158 5.56 0.00 0.00 3.10
1147 1163 2.507944 CTCCAATAGGCGGCTGCT 59.492 61.111 23.55 5.84 42.25 4.24
1170 1186 4.436998 CCTCCCCGTGCGTGTCTC 62.437 72.222 0.00 0.00 0.00 3.36
1182 1198 1.511464 GTGTCTCGCAGGTACGACG 60.511 63.158 0.00 0.00 37.09 5.12
1242 1258 1.001597 GTCGTCGACATCTACATCCCC 60.002 57.143 20.28 0.00 32.09 4.81
1432 1448 3.482436 TCTGCACACGGAATTTTTAGGT 58.518 40.909 0.00 0.00 0.00 3.08
1457 1473 4.852134 TGGGAGTTGATTCATGTTGTTG 57.148 40.909 0.00 0.00 0.00 3.33
1460 1476 3.236816 GAGTTGATTCATGTTGTTGGCG 58.763 45.455 0.00 0.00 0.00 5.69
1504 1520 1.966451 CTCGCGAGGGTTTGCCTTT 60.966 57.895 28.40 0.00 34.45 3.11
1531 1547 0.824759 ACAAGTATGAGGACGAGGCC 59.175 55.000 0.00 0.00 0.00 5.19
1720 1739 2.988010 TGCTGAGCGGATGTAAGATT 57.012 45.000 0.00 0.00 0.00 2.40
1801 1820 5.031066 TCCCTCGGTTCACAAATATAAGG 57.969 43.478 0.00 0.00 0.00 2.69
1804 1823 5.183228 CCTCGGTTCACAAATATAAGGTGT 58.817 41.667 0.00 0.00 34.27 4.16
1850 1870 8.543774 ACTACATAGGAACTGAAATGAGTGAAT 58.456 33.333 0.00 0.00 41.52 2.57
1856 1876 8.641498 AGGAACTGAAATGAGTGAATAAACAT 57.359 30.769 0.00 0.00 37.18 2.71
1968 1989 5.934043 CCGATGTCTTGATATTTAGGCATGA 59.066 40.000 9.14 0.00 36.87 3.07
2013 2034 4.286297 CTTCCTGGTTGGATGTGTTAGA 57.714 45.455 0.00 0.00 45.68 2.10
2044 2065 3.583086 ACCCTATGTCTAGTGCAACAGTT 59.417 43.478 0.00 0.00 41.43 3.16
2063 2084 7.784633 ACAGTTAGATTACTCGGTACTAGAC 57.215 40.000 0.00 0.00 0.00 2.59
2064 2085 7.334090 ACAGTTAGATTACTCGGTACTAGACA 58.666 38.462 0.00 0.00 0.00 3.41
2065 2086 7.279758 ACAGTTAGATTACTCGGTACTAGACAC 59.720 40.741 0.00 0.00 0.00 3.67
2066 2087 7.495279 CAGTTAGATTACTCGGTACTAGACACT 59.505 40.741 0.00 0.00 0.00 3.55
2067 2088 8.700051 AGTTAGATTACTCGGTACTAGACACTA 58.300 37.037 0.00 0.00 0.00 2.74
2068 2089 8.977505 GTTAGATTACTCGGTACTAGACACTAG 58.022 40.741 0.00 0.00 0.00 2.57
2069 2090 7.358770 AGATTACTCGGTACTAGACACTAGA 57.641 40.000 11.94 0.00 0.00 2.43
2250 2273 9.791820 CACAATTTGCTGATCTCAACATATTAA 57.208 29.630 0.00 0.00 27.91 1.40
2275 2298 9.662947 AACTCTTATTATGTACCAGGTTACAAC 57.337 33.333 0.00 0.00 0.00 3.32
2298 2321 7.202016 ACTTACAACTTGTGTGAATATGTGG 57.798 36.000 4.57 0.00 41.89 4.17
2570 2610 4.265893 TCTGTTTGTTAGTGTTGAAGCCA 58.734 39.130 0.00 0.00 0.00 4.75
2574 2614 4.582701 TTGTTAGTGTTGAAGCCAATGG 57.417 40.909 0.00 0.00 34.39 3.16
2738 2795 1.292061 TCGTTGTCGTTTTCCCACTG 58.708 50.000 0.00 0.00 38.33 3.66
2819 2876 1.290955 CTTGTGCACAAGCCCCATG 59.709 57.895 38.56 20.02 45.59 3.66
2824 2881 2.967397 CACAAGCCCCATGTGCTG 59.033 61.111 7.65 5.43 41.42 4.41
2825 2882 1.904865 CACAAGCCCCATGTGCTGT 60.905 57.895 7.65 5.95 41.42 4.40
2826 2883 0.608856 CACAAGCCCCATGTGCTGTA 60.609 55.000 7.65 0.00 41.42 2.74
2827 2884 0.332632 ACAAGCCCCATGTGCTGTAT 59.667 50.000 7.65 0.00 39.48 2.29
2828 2885 1.272648 ACAAGCCCCATGTGCTGTATT 60.273 47.619 7.65 0.00 39.48 1.89
2829 2886 1.826720 CAAGCCCCATGTGCTGTATTT 59.173 47.619 7.65 0.00 39.48 1.40
2830 2887 1.767759 AGCCCCATGTGCTGTATTTC 58.232 50.000 6.21 0.00 37.76 2.17
2831 2888 1.005805 AGCCCCATGTGCTGTATTTCA 59.994 47.619 6.21 0.00 37.76 2.69
2832 2889 1.134946 GCCCCATGTGCTGTATTTCAC 59.865 52.381 0.00 0.00 0.00 3.18
2833 2890 1.401552 CCCCATGTGCTGTATTTCACG 59.598 52.381 0.00 0.00 36.06 4.35
2834 2891 2.083774 CCCATGTGCTGTATTTCACGT 58.916 47.619 0.00 0.00 36.06 4.49
2835 2892 2.159531 CCCATGTGCTGTATTTCACGTG 60.160 50.000 9.94 9.94 45.14 4.49
2879 2936 9.252962 GGGATTCAATTGAAGCACATTATAAAG 57.747 33.333 31.13 0.00 42.89 1.85
2932 3009 9.178427 CTGTAGTTCAGTAGTTGTGTAAGTAAC 57.822 37.037 0.00 0.00 39.17 2.50
2959 3036 4.154918 GGTTCCAGTAAGTTCTTCAGCATG 59.845 45.833 0.00 0.00 37.54 4.06
3014 3096 4.442052 GCTGACTGCTACCATGTCTATTGA 60.442 45.833 0.00 0.00 38.95 2.57
3102 3184 4.221482 GGATTTCCTCCATTCTTGTTGCTT 59.779 41.667 0.00 0.00 44.26 3.91
3275 3357 0.248702 GCAGGAGTCGTAGCACTAGC 60.249 60.000 0.00 0.00 42.56 3.42
3315 3397 2.223595 CGTGGCAGAGACAGGTATACAG 60.224 54.545 5.01 0.00 0.00 2.74
3475 3557 2.169144 CAGAGACAGGTATGCACATCCA 59.831 50.000 0.00 0.00 0.00 3.41
3511 3593 9.505995 TCTTTTGTTCCGTTTTACTGAATTTAC 57.494 29.630 0.00 0.00 0.00 2.01
3610 3714 4.058434 AGGGGTCTCCTGCTAAGC 57.942 61.111 0.00 0.00 46.07 3.09
3611 3715 2.060980 AGGGGTCTCCTGCTAAGCG 61.061 63.158 0.00 0.00 46.07 4.68
3612 3716 2.202946 GGGTCTCCTGCTAAGCGC 60.203 66.667 0.00 0.00 39.77 5.92
3623 3727 2.223285 GCTAAGCGCAATGATGATCG 57.777 50.000 11.47 0.00 38.92 3.69
3624 3728 1.794701 GCTAAGCGCAATGATGATCGA 59.205 47.619 11.47 0.00 38.92 3.59
3625 3729 2.414481 GCTAAGCGCAATGATGATCGAT 59.586 45.455 11.47 0.00 38.92 3.59
3626 3730 3.483248 GCTAAGCGCAATGATGATCGATC 60.483 47.826 18.72 18.72 38.92 3.69
3627 3731 2.452295 AGCGCAATGATGATCGATCT 57.548 45.000 25.02 11.50 31.55 2.75
3628 3732 2.335752 AGCGCAATGATGATCGATCTC 58.664 47.619 25.02 18.93 31.55 2.75
3629 3733 1.392853 GCGCAATGATGATCGATCTCC 59.607 52.381 25.02 16.58 31.55 3.71
3630 3734 2.930023 GCGCAATGATGATCGATCTCCT 60.930 50.000 25.02 10.70 31.55 3.69
3631 3735 2.666994 CGCAATGATGATCGATCTCCTG 59.333 50.000 25.02 17.86 31.55 3.86
3632 3736 2.415857 GCAATGATGATCGATCTCCTGC 59.584 50.000 25.02 21.95 31.55 4.85
3633 3737 3.865302 GCAATGATGATCGATCTCCTGCT 60.865 47.826 25.02 4.11 31.55 4.24
3634 3738 4.620097 GCAATGATGATCGATCTCCTGCTA 60.620 45.833 25.02 4.41 31.55 3.49
3635 3739 5.476614 CAATGATGATCGATCTCCTGCTAA 58.523 41.667 25.02 3.66 31.55 3.09
3636 3740 4.780275 TGATGATCGATCTCCTGCTAAG 57.220 45.455 25.02 0.00 31.55 2.18
3637 3741 3.056962 TGATGATCGATCTCCTGCTAAGC 60.057 47.826 25.02 6.68 31.55 3.09
3638 3742 1.268079 TGATCGATCTCCTGCTAAGCG 59.732 52.381 25.02 0.00 0.00 4.68
3639 3743 0.038709 ATCGATCTCCTGCTAAGCGC 60.039 55.000 0.00 0.00 39.77 5.92
3649 3753 3.833706 GCTAAGCGCAATGATGACC 57.166 52.632 11.47 0.00 38.92 4.02
3650 3754 0.041839 GCTAAGCGCAATGATGACCG 60.042 55.000 11.47 0.00 38.92 4.79
3651 3755 1.290203 CTAAGCGCAATGATGACCGT 58.710 50.000 11.47 0.00 0.00 4.83
3652 3756 1.665679 CTAAGCGCAATGATGACCGTT 59.334 47.619 11.47 0.00 0.00 4.44
3653 3757 0.447801 AAGCGCAATGATGACCGTTC 59.552 50.000 11.47 0.00 0.00 3.95
3654 3758 0.391661 AGCGCAATGATGACCGTTCT 60.392 50.000 11.47 0.00 0.00 3.01
3655 3759 0.026803 GCGCAATGATGACCGTTCTC 59.973 55.000 0.30 0.00 0.00 2.87
3656 3760 0.652592 CGCAATGATGACCGTTCTCC 59.347 55.000 0.00 0.00 0.00 3.71
3657 3761 1.740380 CGCAATGATGACCGTTCTCCT 60.740 52.381 0.00 0.00 0.00 3.69
3658 3762 1.667724 GCAATGATGACCGTTCTCCTG 59.332 52.381 0.00 0.00 0.00 3.86
3659 3763 2.936993 GCAATGATGACCGTTCTCCTGT 60.937 50.000 0.00 0.00 0.00 4.00
3660 3764 3.338249 CAATGATGACCGTTCTCCTGTT 58.662 45.455 0.00 0.00 0.00 3.16
3661 3765 4.503910 CAATGATGACCGTTCTCCTGTTA 58.496 43.478 0.00 0.00 0.00 2.41
3740 3844 1.482182 CAATGATGACCGGTCTCCAGA 59.518 52.381 33.39 15.07 0.00 3.86
3834 3938 4.655649 TCATCACAGTTGATACCCTAGCAT 59.344 41.667 0.00 0.00 40.79 3.79
3879 3983 5.426509 TCTGTCTACAGGATCAATGGAACAT 59.573 40.000 10.11 0.00 43.76 2.71
4239 4349 6.318144 GCTGTATCCCTTAATGATGATGATGG 59.682 42.308 0.00 0.00 0.00 3.51
4240 4350 7.333779 TGTATCCCTTAATGATGATGATGGT 57.666 36.000 0.00 0.00 0.00 3.55
4241 4351 7.170277 TGTATCCCTTAATGATGATGATGGTG 58.830 38.462 0.00 0.00 0.00 4.17
4427 4537 3.252701 CCATGTTTCTGCATGCTAGGATC 59.747 47.826 20.33 9.00 43.46 3.36
4478 4588 8.310122 AGTCTTTGCCCATGATTTATGTTATT 57.690 30.769 0.00 0.00 34.87 1.40
4538 4653 5.046663 ACAGACATTTGGGTGTTCTTTGTTT 60.047 36.000 0.00 0.00 31.16 2.83
4546 4661 6.591750 TGGGTGTTCTTTGTTTTTAGTTCA 57.408 33.333 0.00 0.00 0.00 3.18
4566 4681 8.230472 AGTTCAGGCCTAAATAAATTCTGATG 57.770 34.615 3.98 0.00 31.16 3.07
4661 4776 7.753659 AGCTATTATGTACAGACTACATAGCG 58.246 38.462 18.95 0.00 40.29 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.655003 GGAGTGGATGATTCTTTACAAAGTCA 59.345 38.462 1.86 0.53 37.31 3.41
1 2 6.881602 AGGAGTGGATGATTCTTTACAAAGTC 59.118 38.462 1.86 0.00 37.31 3.01
2 3 6.784031 AGGAGTGGATGATTCTTTACAAAGT 58.216 36.000 1.86 0.00 37.31 2.66
3 4 6.881065 TGAGGAGTGGATGATTCTTTACAAAG 59.119 38.462 0.00 0.00 37.36 2.77
4 5 6.778821 TGAGGAGTGGATGATTCTTTACAAA 58.221 36.000 0.00 0.00 0.00 2.83
5 6 6.373005 TGAGGAGTGGATGATTCTTTACAA 57.627 37.500 0.00 0.00 0.00 2.41
6 7 6.013379 ACTTGAGGAGTGGATGATTCTTTACA 60.013 38.462 0.00 0.00 37.17 2.41
7 8 6.410540 ACTTGAGGAGTGGATGATTCTTTAC 58.589 40.000 0.00 0.00 37.17 2.01
8 9 6.352222 GGACTTGAGGAGTGGATGATTCTTTA 60.352 42.308 0.00 0.00 39.19 1.85
9 10 5.495640 GACTTGAGGAGTGGATGATTCTTT 58.504 41.667 0.00 0.00 39.19 2.52
10 11 4.080638 GGACTTGAGGAGTGGATGATTCTT 60.081 45.833 0.00 0.00 39.19 2.52
11 12 3.454082 GGACTTGAGGAGTGGATGATTCT 59.546 47.826 0.00 0.00 39.19 2.40
12 13 3.454082 AGGACTTGAGGAGTGGATGATTC 59.546 47.826 0.00 0.00 39.19 2.52
13 14 3.199508 CAGGACTTGAGGAGTGGATGATT 59.800 47.826 0.00 0.00 39.19 2.57
14 15 2.770802 CAGGACTTGAGGAGTGGATGAT 59.229 50.000 0.00 0.00 39.19 2.45
15 16 2.182827 CAGGACTTGAGGAGTGGATGA 58.817 52.381 0.00 0.00 39.19 2.92
16 17 1.406614 GCAGGACTTGAGGAGTGGATG 60.407 57.143 0.00 0.00 39.19 3.51
17 18 0.908198 GCAGGACTTGAGGAGTGGAT 59.092 55.000 0.00 0.00 39.19 3.41
18 19 0.178921 AGCAGGACTTGAGGAGTGGA 60.179 55.000 0.00 0.00 39.19 4.02
19 20 0.036577 CAGCAGGACTTGAGGAGTGG 60.037 60.000 0.00 0.00 39.19 4.00
20 21 0.036577 CCAGCAGGACTTGAGGAGTG 60.037 60.000 0.00 0.00 39.19 3.51
21 22 0.178921 TCCAGCAGGACTTGAGGAGT 60.179 55.000 0.00 0.00 39.61 3.85
22 23 2.676232 TCCAGCAGGACTTGAGGAG 58.324 57.895 0.00 0.00 39.61 3.69
23 24 4.975490 TCCAGCAGGACTTGAGGA 57.025 55.556 0.00 0.00 39.61 3.71
32 33 3.434299 GCATTTTTGTTTCATCCAGCAGG 59.566 43.478 0.00 0.00 0.00 4.85
33 34 4.059511 TGCATTTTTGTTTCATCCAGCAG 58.940 39.130 0.00 0.00 0.00 4.24
34 35 4.069300 TGCATTTTTGTTTCATCCAGCA 57.931 36.364 0.00 0.00 0.00 4.41
35 36 5.421212 TTTGCATTTTTGTTTCATCCAGC 57.579 34.783 0.00 0.00 0.00 4.85
36 37 5.237779 AGCTTTGCATTTTTGTTTCATCCAG 59.762 36.000 0.00 0.00 0.00 3.86
37 38 5.124645 AGCTTTGCATTTTTGTTTCATCCA 58.875 33.333 0.00 0.00 0.00 3.41
38 39 5.678132 AGCTTTGCATTTTTGTTTCATCC 57.322 34.783 0.00 0.00 0.00 3.51
39 40 6.301861 GCTAGCTTTGCATTTTTGTTTCATC 58.698 36.000 7.70 0.00 0.00 2.92
40 41 5.179929 GGCTAGCTTTGCATTTTTGTTTCAT 59.820 36.000 15.72 0.00 0.00 2.57
41 42 4.511082 GGCTAGCTTTGCATTTTTGTTTCA 59.489 37.500 15.72 0.00 0.00 2.69
42 43 4.511082 TGGCTAGCTTTGCATTTTTGTTTC 59.489 37.500 15.72 0.00 0.00 2.78
43 44 4.450053 TGGCTAGCTTTGCATTTTTGTTT 58.550 34.783 15.72 0.00 0.00 2.83
44 45 4.070630 TGGCTAGCTTTGCATTTTTGTT 57.929 36.364 15.72 0.00 0.00 2.83
45 46 3.749665 TGGCTAGCTTTGCATTTTTGT 57.250 38.095 15.72 0.00 0.00 2.83
46 47 4.309099 TCTTGGCTAGCTTTGCATTTTTG 58.691 39.130 15.72 0.00 0.00 2.44
47 48 4.605640 TCTTGGCTAGCTTTGCATTTTT 57.394 36.364 15.72 0.00 0.00 1.94
48 49 4.281688 TCTTCTTGGCTAGCTTTGCATTTT 59.718 37.500 15.72 0.00 0.00 1.82
49 50 3.828451 TCTTCTTGGCTAGCTTTGCATTT 59.172 39.130 15.72 0.00 0.00 2.32
50 51 3.424703 TCTTCTTGGCTAGCTTTGCATT 58.575 40.909 15.72 0.00 0.00 3.56
51 52 3.077484 TCTTCTTGGCTAGCTTTGCAT 57.923 42.857 15.72 0.00 0.00 3.96
52 53 2.566833 TCTTCTTGGCTAGCTTTGCA 57.433 45.000 15.72 0.31 0.00 4.08
53 54 3.428589 CCATTCTTCTTGGCTAGCTTTGC 60.429 47.826 15.72 0.00 0.00 3.68
54 55 3.760684 ACCATTCTTCTTGGCTAGCTTTG 59.239 43.478 15.72 4.93 37.81 2.77
55 56 3.760684 CACCATTCTTCTTGGCTAGCTTT 59.239 43.478 15.72 0.00 37.81 3.51
56 57 3.245052 ACACCATTCTTCTTGGCTAGCTT 60.245 43.478 15.72 0.00 37.81 3.74
57 58 2.307098 ACACCATTCTTCTTGGCTAGCT 59.693 45.455 15.72 0.00 37.81 3.32
58 59 2.716217 ACACCATTCTTCTTGGCTAGC 58.284 47.619 6.04 6.04 37.81 3.42
59 60 3.441572 CCAACACCATTCTTCTTGGCTAG 59.558 47.826 0.00 0.00 37.81 3.42
60 61 3.073798 TCCAACACCATTCTTCTTGGCTA 59.926 43.478 0.00 0.00 37.81 3.93
61 62 2.158475 TCCAACACCATTCTTCTTGGCT 60.158 45.455 0.00 0.00 37.81 4.75
62 63 2.229784 CTCCAACACCATTCTTCTTGGC 59.770 50.000 0.00 0.00 37.81 4.52
63 64 2.229784 GCTCCAACACCATTCTTCTTGG 59.770 50.000 0.00 0.00 40.26 3.61
64 65 2.886523 TGCTCCAACACCATTCTTCTTG 59.113 45.455 0.00 0.00 0.00 3.02
65 66 3.228188 TGCTCCAACACCATTCTTCTT 57.772 42.857 0.00 0.00 0.00 2.52
66 67 2.957402 TGCTCCAACACCATTCTTCT 57.043 45.000 0.00 0.00 0.00 2.85
67 68 4.009675 TGTATGCTCCAACACCATTCTTC 58.990 43.478 0.00 0.00 0.00 2.87
68 69 4.032960 TGTATGCTCCAACACCATTCTT 57.967 40.909 0.00 0.00 0.00 2.52
69 70 3.719268 TGTATGCTCCAACACCATTCT 57.281 42.857 0.00 0.00 0.00 2.40
70 71 3.129287 CCTTGTATGCTCCAACACCATTC 59.871 47.826 0.00 0.00 0.00 2.67
71 72 3.091545 CCTTGTATGCTCCAACACCATT 58.908 45.455 0.00 0.00 0.00 3.16
72 73 2.308570 TCCTTGTATGCTCCAACACCAT 59.691 45.455 0.00 0.00 0.00 3.55
73 74 1.702401 TCCTTGTATGCTCCAACACCA 59.298 47.619 0.00 0.00 0.00 4.17
74 75 2.489938 TCCTTGTATGCTCCAACACC 57.510 50.000 0.00 0.00 0.00 4.16
75 76 3.674997 TCTTCCTTGTATGCTCCAACAC 58.325 45.455 0.00 0.00 0.00 3.32
76 77 3.327757 ACTCTTCCTTGTATGCTCCAACA 59.672 43.478 0.00 0.00 0.00 3.33
77 78 3.944087 ACTCTTCCTTGTATGCTCCAAC 58.056 45.455 0.00 0.00 0.00 3.77
78 79 4.041567 TCAACTCTTCCTTGTATGCTCCAA 59.958 41.667 0.00 0.00 0.00 3.53
79 80 3.582647 TCAACTCTTCCTTGTATGCTCCA 59.417 43.478 0.00 0.00 0.00 3.86
80 81 4.207891 TCAACTCTTCCTTGTATGCTCC 57.792 45.455 0.00 0.00 0.00 4.70
81 82 5.448360 GCAATCAACTCTTCCTTGTATGCTC 60.448 44.000 0.00 0.00 32.97 4.26
82 83 4.397417 GCAATCAACTCTTCCTTGTATGCT 59.603 41.667 0.00 0.00 32.97 3.79
83 84 4.666237 GCAATCAACTCTTCCTTGTATGC 58.334 43.478 0.00 0.00 0.00 3.14
84 85 4.631377 TCGCAATCAACTCTTCCTTGTATG 59.369 41.667 0.00 0.00 0.00 2.39
85 86 4.631813 GTCGCAATCAACTCTTCCTTGTAT 59.368 41.667 0.00 0.00 0.00 2.29
86 87 3.994392 GTCGCAATCAACTCTTCCTTGTA 59.006 43.478 0.00 0.00 0.00 2.41
87 88 2.808543 GTCGCAATCAACTCTTCCTTGT 59.191 45.455 0.00 0.00 0.00 3.16
88 89 2.159787 CGTCGCAATCAACTCTTCCTTG 60.160 50.000 0.00 0.00 0.00 3.61
89 90 2.069273 CGTCGCAATCAACTCTTCCTT 58.931 47.619 0.00 0.00 0.00 3.36
90 91 1.673033 CCGTCGCAATCAACTCTTCCT 60.673 52.381 0.00 0.00 0.00 3.36
91 92 0.721718 CCGTCGCAATCAACTCTTCC 59.278 55.000 0.00 0.00 0.00 3.46
92 93 1.126846 CACCGTCGCAATCAACTCTTC 59.873 52.381 0.00 0.00 0.00 2.87
93 94 1.148310 CACCGTCGCAATCAACTCTT 58.852 50.000 0.00 0.00 0.00 2.85
94 95 0.670546 CCACCGTCGCAATCAACTCT 60.671 55.000 0.00 0.00 0.00 3.24
95 96 0.669318 TCCACCGTCGCAATCAACTC 60.669 55.000 0.00 0.00 0.00 3.01
96 97 0.670546 CTCCACCGTCGCAATCAACT 60.671 55.000 0.00 0.00 0.00 3.16
97 98 1.635663 CCTCCACCGTCGCAATCAAC 61.636 60.000 0.00 0.00 0.00 3.18
98 99 1.375396 CCTCCACCGTCGCAATCAA 60.375 57.895 0.00 0.00 0.00 2.57
99 100 2.264480 CCTCCACCGTCGCAATCA 59.736 61.111 0.00 0.00 0.00 2.57
100 101 2.100631 CACCTCCACCGTCGCAATC 61.101 63.158 0.00 0.00 0.00 2.67
101 102 2.047274 CACCTCCACCGTCGCAAT 60.047 61.111 0.00 0.00 0.00 3.56
102 103 2.709125 CTTCACCTCCACCGTCGCAA 62.709 60.000 0.00 0.00 0.00 4.85
103 104 3.220999 CTTCACCTCCACCGTCGCA 62.221 63.158 0.00 0.00 0.00 5.10
104 105 2.432628 CTTCACCTCCACCGTCGC 60.433 66.667 0.00 0.00 0.00 5.19
105 106 0.944311 CAACTTCACCTCCACCGTCG 60.944 60.000 0.00 0.00 0.00 5.12
106 107 0.391597 TCAACTTCACCTCCACCGTC 59.608 55.000 0.00 0.00 0.00 4.79
107 108 0.106149 GTCAACTTCACCTCCACCGT 59.894 55.000 0.00 0.00 0.00 4.83
108 109 0.602905 GGTCAACTTCACCTCCACCG 60.603 60.000 0.00 0.00 0.00 4.94
109 110 0.472471 TGGTCAACTTCACCTCCACC 59.528 55.000 0.00 0.00 34.66 4.61
110 111 2.568623 ATGGTCAACTTCACCTCCAC 57.431 50.000 0.00 0.00 34.66 4.02
111 112 2.976185 TGTATGGTCAACTTCACCTCCA 59.024 45.455 0.00 0.00 34.66 3.86
112 113 3.695830 TGTATGGTCAACTTCACCTCC 57.304 47.619 0.00 0.00 34.66 4.30
113 114 7.336931 ACATTTATGTATGGTCAACTTCACCTC 59.663 37.037 0.00 0.00 39.68 3.85
114 115 7.175104 ACATTTATGTATGGTCAACTTCACCT 58.825 34.615 0.00 0.00 39.68 4.00
115 116 7.391148 ACATTTATGTATGGTCAACTTCACC 57.609 36.000 0.00 0.00 39.68 4.02
116 117 7.273381 GCAACATTTATGTATGGTCAACTTCAC 59.727 37.037 0.00 0.00 40.80 3.18
117 118 7.176515 AGCAACATTTATGTATGGTCAACTTCA 59.823 33.333 0.00 0.00 40.80 3.02
118 119 7.538575 AGCAACATTTATGTATGGTCAACTTC 58.461 34.615 0.00 0.00 40.80 3.01
163 164 0.253044 ACATGTGAGCAACGGCCTAT 59.747 50.000 0.00 0.00 42.56 2.57
284 287 4.101448 GCCGACATCCCTGCCACT 62.101 66.667 0.00 0.00 0.00 4.00
347 350 1.977293 GCTCTCGGGCCTCCATCTTT 61.977 60.000 0.84 0.00 0.00 2.52
359 362 1.430479 GCATCTGATCATGCTCTCGG 58.570 55.000 13.00 0.00 45.03 4.63
368 371 3.071023 TGCATCTCATCTGCATCTGATCA 59.929 43.478 0.00 0.00 44.30 2.92
382 385 1.078918 CTCCGCCACTTGCATCTCA 60.079 57.895 0.00 0.00 41.33 3.27
416 419 2.689034 CCCAGACCCTCCCACCTC 60.689 72.222 0.00 0.00 0.00 3.85
477 482 2.102252 CCTCTCCCATTCTTCTTCCTCG 59.898 54.545 0.00 0.00 0.00 4.63
524 529 7.524717 ACAATATGTGTTAGAATAATGGGGC 57.475 36.000 0.00 0.00 37.01 5.80
558 564 1.456287 GAGGAGGCAGTGGTGGTTT 59.544 57.895 0.00 0.00 0.00 3.27
603 609 4.380531 AGTATTCGGCAATGTGGTCATAG 58.619 43.478 0.00 0.00 33.49 2.23
641 647 1.283613 ACCCATTTGCCTCCGAACATA 59.716 47.619 0.00 0.00 0.00 2.29
661 667 5.690865 ACGGGAGAAATAAATCCTTGCATA 58.309 37.500 0.00 0.00 35.80 3.14
712 721 1.402852 GCCCGATCCTCTTTTGTTTGC 60.403 52.381 0.00 0.00 0.00 3.68
713 722 1.202348 GGCCCGATCCTCTTTTGTTTG 59.798 52.381 0.00 0.00 0.00 2.93
714 723 1.545841 GGCCCGATCCTCTTTTGTTT 58.454 50.000 0.00 0.00 0.00 2.83
715 724 0.676782 CGGCCCGATCCTCTTTTGTT 60.677 55.000 0.00 0.00 0.00 2.83
716 725 1.078426 CGGCCCGATCCTCTTTTGT 60.078 57.895 0.00 0.00 0.00 2.83
717 726 1.819632 CCGGCCCGATCCTCTTTTG 60.820 63.158 3.71 0.00 0.00 2.44
718 727 2.590092 CCGGCCCGATCCTCTTTT 59.410 61.111 3.71 0.00 0.00 2.27
719 728 4.176752 GCCGGCCCGATCCTCTTT 62.177 66.667 18.11 0.00 0.00 2.52
725 734 4.796495 AAACAGGCCGGCCCGATC 62.796 66.667 41.72 17.41 39.21 3.69
726 735 4.360405 AAAACAGGCCGGCCCGAT 62.360 61.111 41.72 25.09 39.21 4.18
729 738 4.678743 AGGAAAACAGGCCGGCCC 62.679 66.667 41.72 24.74 36.58 5.80
730 739 1.754380 AAAAGGAAAACAGGCCGGCC 61.754 55.000 39.29 39.29 0.00 6.13
731 740 0.105964 AAAAAGGAAAACAGGCCGGC 59.894 50.000 21.18 21.18 0.00 6.13
747 756 5.131475 ACCAGGCCGGACTATTATCTAAAAA 59.869 40.000 11.18 0.00 38.63 1.94
748 757 4.657039 ACCAGGCCGGACTATTATCTAAAA 59.343 41.667 11.18 0.00 38.63 1.52
749 758 4.228824 ACCAGGCCGGACTATTATCTAAA 58.771 43.478 11.18 0.00 38.63 1.85
750 759 3.853207 ACCAGGCCGGACTATTATCTAA 58.147 45.455 11.18 0.00 38.63 2.10
751 760 3.537795 ACCAGGCCGGACTATTATCTA 57.462 47.619 11.18 0.00 38.63 1.98
752 761 2.400467 ACCAGGCCGGACTATTATCT 57.600 50.000 11.18 0.00 38.63 1.98
753 762 3.767673 TGATACCAGGCCGGACTATTATC 59.232 47.826 22.64 22.64 38.63 1.75
754 763 3.786553 TGATACCAGGCCGGACTATTAT 58.213 45.455 11.18 9.93 38.63 1.28
755 764 3.247948 TGATACCAGGCCGGACTATTA 57.752 47.619 11.18 4.03 38.63 0.98
756 765 2.097110 TGATACCAGGCCGGACTATT 57.903 50.000 11.18 1.04 38.63 1.73
757 766 1.971357 CTTGATACCAGGCCGGACTAT 59.029 52.381 11.18 3.27 38.63 2.12
758 767 1.063492 TCTTGATACCAGGCCGGACTA 60.063 52.381 11.18 0.00 38.63 2.59
759 768 0.325296 TCTTGATACCAGGCCGGACT 60.325 55.000 2.12 2.12 38.63 3.85
760 769 0.759346 ATCTTGATACCAGGCCGGAC 59.241 55.000 18.74 0.00 38.63 4.79
761 770 1.048601 GATCTTGATACCAGGCCGGA 58.951 55.000 18.74 4.82 38.63 5.14
762 771 0.319900 CGATCTTGATACCAGGCCGG 60.320 60.000 11.48 11.48 42.50 6.13
763 772 0.673985 TCGATCTTGATACCAGGCCG 59.326 55.000 0.00 0.00 0.00 6.13
764 773 2.672478 CGATCGATCTTGATACCAGGCC 60.672 54.545 22.43 0.00 0.00 5.19
765 774 2.600731 CGATCGATCTTGATACCAGGC 58.399 52.381 22.43 0.00 0.00 4.85
766 775 2.230025 AGCGATCGATCTTGATACCAGG 59.770 50.000 21.57 4.73 0.00 4.45
767 776 3.567576 AGCGATCGATCTTGATACCAG 57.432 47.619 21.57 5.43 0.00 4.00
768 777 4.322080 AAAGCGATCGATCTTGATACCA 57.678 40.909 21.57 0.00 0.00 3.25
769 778 6.764877 TTTAAAGCGATCGATCTTGATACC 57.235 37.500 21.57 0.00 0.00 2.73
770 779 7.618442 TGTTTTAAAGCGATCGATCTTGATAC 58.382 34.615 21.57 12.21 0.00 2.24
771 780 7.042725 CCTGTTTTAAAGCGATCGATCTTGATA 60.043 37.037 21.57 8.46 0.00 2.15
772 781 6.238211 CCTGTTTTAAAGCGATCGATCTTGAT 60.238 38.462 21.57 4.55 0.00 2.57
773 782 5.063438 CCTGTTTTAAAGCGATCGATCTTGA 59.937 40.000 21.57 3.70 0.00 3.02
774 783 5.258622 CCTGTTTTAAAGCGATCGATCTTG 58.741 41.667 21.57 9.66 0.00 3.02
775 784 4.201822 GCCTGTTTTAAAGCGATCGATCTT 60.202 41.667 21.57 10.84 0.00 2.40
776 785 3.309954 GCCTGTTTTAAAGCGATCGATCT 59.690 43.478 21.57 0.22 0.00 2.75
777 786 3.546218 GGCCTGTTTTAAAGCGATCGATC 60.546 47.826 21.57 15.68 0.00 3.69
778 787 2.354821 GGCCTGTTTTAAAGCGATCGAT 59.645 45.455 21.57 10.64 0.00 3.59
779 788 1.735571 GGCCTGTTTTAAAGCGATCGA 59.264 47.619 21.57 0.00 0.00 3.59
780 789 1.529010 CGGCCTGTTTTAAAGCGATCG 60.529 52.381 11.69 11.69 0.00 3.69
781 790 1.735571 TCGGCCTGTTTTAAAGCGATC 59.264 47.619 0.00 0.00 0.00 3.69
782 791 1.816074 TCGGCCTGTTTTAAAGCGAT 58.184 45.000 0.00 0.00 0.00 4.58
783 792 1.264826 GTTCGGCCTGTTTTAAAGCGA 59.735 47.619 0.00 0.00 0.00 4.93
784 793 1.681825 GTTCGGCCTGTTTTAAAGCG 58.318 50.000 0.00 0.00 0.00 4.68
785 794 1.664874 CCGTTCGGCCTGTTTTAAAGC 60.665 52.381 0.00 0.00 0.00 3.51
786 795 1.605232 ACCGTTCGGCCTGTTTTAAAG 59.395 47.619 11.32 0.00 0.00 1.85
787 796 1.677942 ACCGTTCGGCCTGTTTTAAA 58.322 45.000 11.32 0.00 0.00 1.52
788 797 1.677942 AACCGTTCGGCCTGTTTTAA 58.322 45.000 11.32 0.00 0.00 1.52
789 798 2.415776 CTAACCGTTCGGCCTGTTTTA 58.584 47.619 11.32 1.08 0.00 1.52
790 799 1.232119 CTAACCGTTCGGCCTGTTTT 58.768 50.000 11.32 0.00 0.00 2.43
798 807 2.435410 GTGGGCCTAACCGTTCGG 60.435 66.667 4.53 9.81 40.62 4.30
838 847 1.067821 GATCCTTCTAGGGCTCACACG 59.932 57.143 0.00 0.00 35.59 4.49
840 849 1.403814 CGATCCTTCTAGGGCTCACA 58.596 55.000 0.00 0.00 35.59 3.58
841 850 0.676736 CCGATCCTTCTAGGGCTCAC 59.323 60.000 0.00 0.00 35.59 3.51
842 851 1.115930 GCCGATCCTTCTAGGGCTCA 61.116 60.000 0.00 0.00 40.59 4.26
863 872 1.152567 TTGGGTGGCCACAAGAAGG 60.153 57.895 35.78 0.00 0.00 3.46
873 882 4.678743 GAGGGTGGGTTGGGTGGC 62.679 72.222 0.00 0.00 0.00 5.01
880 889 4.324991 GGAACGCGAGGGTGGGTT 62.325 66.667 15.93 0.00 46.22 4.11
918 929 2.045340 AGCGGATTGGGGGAAACG 60.045 61.111 0.00 0.00 0.00 3.60
919 930 2.112815 CGAGCGGATTGGGGGAAAC 61.113 63.158 0.00 0.00 0.00 2.78
1082 1098 1.153349 GTGGAGATGCGAAGGGGTC 60.153 63.158 0.00 0.00 0.00 4.46
1083 1099 2.670148 GGTGGAGATGCGAAGGGGT 61.670 63.158 0.00 0.00 0.00 4.95
1086 1102 2.892425 GCGGTGGAGATGCGAAGG 60.892 66.667 0.00 0.00 0.00 3.46
1135 1151 0.610687 GGATTAGAGCAGCCGCCTAT 59.389 55.000 0.00 0.00 39.83 2.57
1144 1160 1.686325 GCACGGGGAGGATTAGAGCA 61.686 60.000 0.00 0.00 0.00 4.26
1147 1163 1.380785 ACGCACGGGGAGGATTAGA 60.381 57.895 0.00 0.00 0.00 2.10
1179 1195 1.366854 GGAAAAGGTCATCGGCCGTC 61.367 60.000 27.15 11.71 0.00 4.79
1182 1198 2.112815 CGGGAAAAGGTCATCGGCC 61.113 63.158 0.00 0.00 0.00 6.13
1242 1258 4.162690 GCCTACCTGCGGTCCCTG 62.163 72.222 3.45 0.00 37.09 4.45
1262 1278 9.209048 AGAACCTAGGGTTTTATTTGTCTTTTT 57.791 29.630 14.81 0.00 46.95 1.94
1263 1279 8.777578 AGAACCTAGGGTTTTATTTGTCTTTT 57.222 30.769 14.81 0.00 46.95 2.27
1264 1280 8.777578 AAGAACCTAGGGTTTTATTTGTCTTT 57.222 30.769 14.81 0.00 46.95 2.52
1265 1281 7.174426 CGAAGAACCTAGGGTTTTATTTGTCTT 59.826 37.037 14.81 2.28 46.95 3.01
1266 1282 6.653740 CGAAGAACCTAGGGTTTTATTTGTCT 59.346 38.462 14.81 0.00 46.95 3.41
1267 1283 6.429078 ACGAAGAACCTAGGGTTTTATTTGTC 59.571 38.462 14.81 0.00 46.95 3.18
1268 1284 6.301486 ACGAAGAACCTAGGGTTTTATTTGT 58.699 36.000 14.81 9.10 46.95 2.83
1269 1285 6.812879 ACGAAGAACCTAGGGTTTTATTTG 57.187 37.500 14.81 8.48 46.95 2.32
1270 1286 7.066645 GCATACGAAGAACCTAGGGTTTTATTT 59.933 37.037 14.81 0.00 46.95 1.40
1271 1287 6.541278 GCATACGAAGAACCTAGGGTTTTATT 59.459 38.462 14.81 1.68 46.95 1.40
1272 1288 6.053650 GCATACGAAGAACCTAGGGTTTTAT 58.946 40.000 14.81 2.68 46.95 1.40
1273 1289 5.188359 AGCATACGAAGAACCTAGGGTTTTA 59.812 40.000 14.81 0.00 46.95 1.52
1274 1290 4.019591 AGCATACGAAGAACCTAGGGTTTT 60.020 41.667 14.81 8.27 46.95 2.43
1275 1291 3.518303 AGCATACGAAGAACCTAGGGTTT 59.482 43.478 14.81 0.00 46.95 3.27
1277 1293 2.431057 CAGCATACGAAGAACCTAGGGT 59.569 50.000 14.81 6.29 37.65 4.34
1278 1294 2.224066 CCAGCATACGAAGAACCTAGGG 60.224 54.545 14.81 0.00 0.00 3.53
1279 1295 2.431057 ACCAGCATACGAAGAACCTAGG 59.569 50.000 7.41 7.41 0.00 3.02
1280 1296 3.802948 ACCAGCATACGAAGAACCTAG 57.197 47.619 0.00 0.00 0.00 3.02
1281 1297 4.250464 CAAACCAGCATACGAAGAACCTA 58.750 43.478 0.00 0.00 0.00 3.08
1282 1298 3.074412 CAAACCAGCATACGAAGAACCT 58.926 45.455 0.00 0.00 0.00 3.50
1283 1299 2.161609 CCAAACCAGCATACGAAGAACC 59.838 50.000 0.00 0.00 0.00 3.62
1284 1300 2.414161 GCCAAACCAGCATACGAAGAAC 60.414 50.000 0.00 0.00 0.00 3.01
1285 1301 1.810151 GCCAAACCAGCATACGAAGAA 59.190 47.619 0.00 0.00 0.00 2.52
1286 1302 1.271108 TGCCAAACCAGCATACGAAGA 60.271 47.619 0.00 0.00 34.69 2.87
1287 1303 1.131126 CTGCCAAACCAGCATACGAAG 59.869 52.381 0.00 0.00 40.04 3.79
1432 1448 6.232581 ACAACATGAATCAACTCCCAAAAA 57.767 33.333 0.00 0.00 0.00 1.94
1457 1473 1.002033 CCTGCAGAAAATAGATGCGCC 60.002 52.381 17.39 0.00 42.92 6.53
1460 1476 3.314635 CCAGTCCTGCAGAAAATAGATGC 59.685 47.826 17.39 0.00 40.40 3.91
1504 1520 3.442625 CGTCCTCATACTTGTACCTCACA 59.557 47.826 0.00 0.00 34.51 3.58
1531 1547 2.093216 GCGATCAACTGCCTTCTGG 58.907 57.895 0.00 0.00 0.00 3.86
1720 1739 3.005472 CCAGTAGTCAGGAAAGACGTTGA 59.995 47.826 0.00 0.00 43.24 3.18
1832 1852 7.274250 GCATGTTTATTCACTCATTTCAGTTCC 59.726 37.037 0.00 0.00 0.00 3.62
1856 1876 8.655901 TGGGATGTATATAGACACATTTTAGCA 58.344 33.333 1.52 0.00 35.55 3.49
1968 1989 3.350219 ACATCTAGCAAATGACCGGTT 57.650 42.857 9.42 0.00 0.00 4.44
2044 2065 8.470657 TCTAGTGTCTAGTACCGAGTAATCTA 57.529 38.462 4.13 0.00 0.00 1.98
2063 2084 3.806521 CCATCGATTCCTTTGCTCTAGTG 59.193 47.826 0.00 0.00 0.00 2.74
2064 2085 3.452627 ACCATCGATTCCTTTGCTCTAGT 59.547 43.478 0.00 0.00 0.00 2.57
2065 2086 4.065321 ACCATCGATTCCTTTGCTCTAG 57.935 45.455 0.00 0.00 0.00 2.43
2066 2087 4.487714 AACCATCGATTCCTTTGCTCTA 57.512 40.909 0.00 0.00 0.00 2.43
2067 2088 3.356529 AACCATCGATTCCTTTGCTCT 57.643 42.857 0.00 0.00 0.00 4.09
2068 2089 4.082787 TCAAAACCATCGATTCCTTTGCTC 60.083 41.667 14.00 0.00 0.00 4.26
2069 2090 3.826157 TCAAAACCATCGATTCCTTTGCT 59.174 39.130 14.00 0.00 0.00 3.91
2250 2273 9.043548 AGTTGTAACCTGGTACATAATAAGAGT 57.956 33.333 0.00 0.00 38.20 3.24
2260 2283 6.237887 AGTTGTAAGTTGTAACCTGGTACA 57.762 37.500 0.00 2.39 32.11 2.90
2272 2295 7.591057 CCACATATTCACACAAGTTGTAAGTTG 59.409 37.037 8.49 9.92 43.34 3.16
2273 2296 7.284489 ACCACATATTCACACAAGTTGTAAGTT 59.716 33.333 8.49 0.00 35.67 2.66
2274 2297 6.770785 ACCACATATTCACACAAGTTGTAAGT 59.229 34.615 8.49 0.20 35.67 2.24
2275 2298 7.202016 ACCACATATTCACACAAGTTGTAAG 57.798 36.000 8.49 4.39 35.67 2.34
2298 2321 9.092876 CAAGAAAATGATTCCTAGACAGAGTAC 57.907 37.037 0.00 0.00 0.00 2.73
2570 2610 5.898972 TCAGGCAAAAGAATATTAGGCCATT 59.101 36.000 5.01 0.00 42.26 3.16
2574 2614 6.456795 AGTTCAGGCAAAAGAATATTAGGC 57.543 37.500 0.00 0.00 0.00 3.93
2819 2876 0.168128 GCCCACGTGAAATACAGCAC 59.832 55.000 19.30 0.00 0.00 4.40
2823 2880 2.036006 GCCGCCCACGTGAAATACA 61.036 57.895 19.30 0.00 37.70 2.29
2824 2881 1.303091 AAGCCGCCCACGTGAAATAC 61.303 55.000 19.30 3.30 37.70 1.89
2825 2882 0.249676 TAAGCCGCCCACGTGAAATA 59.750 50.000 19.30 0.00 37.70 1.40
2826 2883 0.393808 ATAAGCCGCCCACGTGAAAT 60.394 50.000 19.30 0.00 37.70 2.17
2827 2884 1.003112 ATAAGCCGCCCACGTGAAA 60.003 52.632 19.30 0.00 37.70 2.69
2828 2885 1.448893 GATAAGCCGCCCACGTGAA 60.449 57.895 19.30 0.00 37.70 3.18
2829 2886 2.185867 GATAAGCCGCCCACGTGA 59.814 61.111 19.30 0.00 37.70 4.35
2830 2887 2.173669 CAGATAAGCCGCCCACGTG 61.174 63.158 9.08 9.08 37.70 4.49
2831 2888 2.186903 CAGATAAGCCGCCCACGT 59.813 61.111 0.00 0.00 37.70 4.49
2832 2889 2.588877 CCAGATAAGCCGCCCACG 60.589 66.667 0.00 0.00 39.67 4.94
2833 2890 0.679960 AAACCAGATAAGCCGCCCAC 60.680 55.000 0.00 0.00 0.00 4.61
2834 2891 0.679640 CAAACCAGATAAGCCGCCCA 60.680 55.000 0.00 0.00 0.00 5.36
2835 2892 1.384222 CCAAACCAGATAAGCCGCCC 61.384 60.000 0.00 0.00 0.00 6.13
2878 2935 8.791675 CCTATTTCTCTTGCTTTCTTTCTTTCT 58.208 33.333 0.00 0.00 0.00 2.52
2879 2936 8.026026 CCCTATTTCTCTTGCTTTCTTTCTTTC 58.974 37.037 0.00 0.00 0.00 2.62
2880 2937 7.524532 GCCCTATTTCTCTTGCTTTCTTTCTTT 60.525 37.037 0.00 0.00 0.00 2.52
2881 2938 6.071672 GCCCTATTTCTCTTGCTTTCTTTCTT 60.072 38.462 0.00 0.00 0.00 2.52
2882 2939 5.417266 GCCCTATTTCTCTTGCTTTCTTTCT 59.583 40.000 0.00 0.00 0.00 2.52
2883 2940 5.417266 AGCCCTATTTCTCTTGCTTTCTTTC 59.583 40.000 0.00 0.00 0.00 2.62
2884 2941 5.184671 CAGCCCTATTTCTCTTGCTTTCTTT 59.815 40.000 0.00 0.00 0.00 2.52
2885 2942 4.704057 CAGCCCTATTTCTCTTGCTTTCTT 59.296 41.667 0.00 0.00 0.00 2.52
2886 2943 4.263683 ACAGCCCTATTTCTCTTGCTTTCT 60.264 41.667 0.00 0.00 0.00 2.52
2887 2944 4.013050 ACAGCCCTATTTCTCTTGCTTTC 58.987 43.478 0.00 0.00 0.00 2.62
2932 3009 3.006537 TGAAGAACTTACTGGAACCTCCG 59.993 47.826 0.00 0.00 40.17 4.63
3275 3357 2.158900 ACGCCTCTTGTAATCATCAGGG 60.159 50.000 0.00 0.00 0.00 4.45
3475 3557 4.911390 ACGGAACAAAAGAGATGATTCCT 58.089 39.130 0.00 0.00 34.65 3.36
3511 3593 4.586001 ACTGCAATAATAAAGGGCATCAGG 59.414 41.667 0.00 0.00 33.50 3.86
3608 3712 2.335752 GAGATCGATCATCATTGCGCT 58.664 47.619 26.47 2.11 33.29 5.92
3609 3713 1.392853 GGAGATCGATCATCATTGCGC 59.607 52.381 26.47 0.00 33.29 6.09
3610 3714 2.666994 CAGGAGATCGATCATCATTGCG 59.333 50.000 26.47 4.77 33.29 4.85
3611 3715 2.415857 GCAGGAGATCGATCATCATTGC 59.584 50.000 26.47 23.64 33.29 3.56
3612 3716 3.927854 AGCAGGAGATCGATCATCATTG 58.072 45.455 26.47 19.65 33.29 2.82
3613 3717 5.722263 CTTAGCAGGAGATCGATCATCATT 58.278 41.667 26.47 5.98 33.29 2.57
3614 3718 4.381825 GCTTAGCAGGAGATCGATCATCAT 60.382 45.833 26.47 15.36 33.29 2.45
3615 3719 3.056962 GCTTAGCAGGAGATCGATCATCA 60.057 47.826 26.47 2.40 33.29 3.07
3616 3720 3.510719 GCTTAGCAGGAGATCGATCATC 58.489 50.000 26.47 18.99 0.00 2.92
3617 3721 2.094803 CGCTTAGCAGGAGATCGATCAT 60.095 50.000 26.47 12.09 0.00 2.45
3618 3722 1.268079 CGCTTAGCAGGAGATCGATCA 59.732 52.381 26.47 1.56 0.00 2.92
3619 3723 1.975837 CGCTTAGCAGGAGATCGATC 58.024 55.000 17.91 17.91 0.00 3.69
3632 3736 1.290203 ACGGTCATCATTGCGCTTAG 58.710 50.000 9.73 0.00 0.00 2.18
3633 3737 1.663643 GAACGGTCATCATTGCGCTTA 59.336 47.619 9.73 0.00 0.00 3.09
3634 3738 0.447801 GAACGGTCATCATTGCGCTT 59.552 50.000 9.73 0.00 0.00 4.68
3635 3739 0.391661 AGAACGGTCATCATTGCGCT 60.392 50.000 9.73 0.00 0.00 5.92
3636 3740 0.026803 GAGAACGGTCATCATTGCGC 59.973 55.000 1.87 0.00 0.00 6.09
3637 3741 0.652592 GGAGAACGGTCATCATTGCG 59.347 55.000 1.87 0.00 0.00 4.85
3638 3742 1.667724 CAGGAGAACGGTCATCATTGC 59.332 52.381 1.87 0.00 0.00 3.56
3639 3743 2.977914 ACAGGAGAACGGTCATCATTG 58.022 47.619 1.87 3.16 0.00 2.82
3640 3744 3.703001 AACAGGAGAACGGTCATCATT 57.297 42.857 1.87 0.00 0.00 2.57
3641 3745 3.133003 CCTAACAGGAGAACGGTCATCAT 59.867 47.826 1.87 0.00 37.67 2.45
3642 3746 2.496070 CCTAACAGGAGAACGGTCATCA 59.504 50.000 1.87 0.00 37.67 3.07
3643 3747 2.738964 GCCTAACAGGAGAACGGTCATC 60.739 54.545 1.87 0.00 37.67 2.92
3644 3748 1.207329 GCCTAACAGGAGAACGGTCAT 59.793 52.381 1.87 0.00 37.67 3.06
3645 3749 0.606604 GCCTAACAGGAGAACGGTCA 59.393 55.000 1.87 0.00 37.67 4.02
3646 3750 0.458025 CGCCTAACAGGAGAACGGTC 60.458 60.000 0.00 0.00 37.36 4.79
3647 3751 1.590147 CGCCTAACAGGAGAACGGT 59.410 57.895 0.00 0.00 37.36 4.83
3648 3752 1.810030 GCGCCTAACAGGAGAACGG 60.810 63.158 0.00 0.00 37.36 4.44
3649 3753 0.669318 TTGCGCCTAACAGGAGAACG 60.669 55.000 4.18 0.00 37.36 3.95
3650 3754 1.398390 CATTGCGCCTAACAGGAGAAC 59.602 52.381 4.18 0.00 37.36 3.01
3651 3755 1.277842 TCATTGCGCCTAACAGGAGAA 59.722 47.619 4.18 0.00 37.36 2.87
3652 3756 0.901827 TCATTGCGCCTAACAGGAGA 59.098 50.000 4.18 0.00 37.36 3.71
3653 3757 1.600957 CATCATTGCGCCTAACAGGAG 59.399 52.381 4.18 0.00 37.67 3.69
3654 3758 1.209261 TCATCATTGCGCCTAACAGGA 59.791 47.619 4.18 0.00 37.67 3.86
3655 3759 1.331756 GTCATCATTGCGCCTAACAGG 59.668 52.381 4.18 0.00 38.80 4.00
3656 3760 1.331756 GGTCATCATTGCGCCTAACAG 59.668 52.381 4.18 0.00 0.00 3.16
3657 3761 1.378531 GGTCATCATTGCGCCTAACA 58.621 50.000 4.18 0.00 0.00 2.41
3658 3762 0.304705 CGGTCATCATTGCGCCTAAC 59.695 55.000 4.18 0.00 0.00 2.34
3659 3763 0.107897 ACGGTCATCATTGCGCCTAA 60.108 50.000 4.18 0.00 0.00 2.69
3660 3764 0.107897 AACGGTCATCATTGCGCCTA 60.108 50.000 4.18 0.00 0.00 3.93
3661 3765 1.369091 GAACGGTCATCATTGCGCCT 61.369 55.000 4.18 0.00 0.00 5.52
3809 3913 3.526931 AGGGTATCAACTGTGATGACG 57.473 47.619 0.00 0.00 44.49 4.35
3834 3938 2.698803 AGCACAAGTCATGTTATCGCA 58.301 42.857 0.00 0.00 41.46 5.10
3879 3983 0.891373 GCCTCCGATATGAGCAGCTA 59.109 55.000 0.00 0.00 0.00 3.32
3949 4059 2.039480 AGTCACTGATGTCAAGCACCAT 59.961 45.455 0.00 0.00 0.00 3.55
4239 4349 2.158856 TCATCATCTCCATCACCAGCAC 60.159 50.000 0.00 0.00 0.00 4.40
4240 4350 2.121129 TCATCATCTCCATCACCAGCA 58.879 47.619 0.00 0.00 0.00 4.41
4241 4351 2.924757 TCATCATCTCCATCACCAGC 57.075 50.000 0.00 0.00 0.00 4.85
4458 4568 7.093156 TGGTTGAATAACATAAATCATGGGCAA 60.093 33.333 0.00 0.00 39.13 4.52
4462 4572 9.086336 GTTGTGGTTGAATAACATAAATCATGG 57.914 33.333 0.00 0.00 39.13 3.66
4478 4588 8.908903 ACTTTTGTAAAGATATGTTGTGGTTGA 58.091 29.630 6.20 0.00 0.00 3.18
4538 4653 9.747898 TCAGAATTTATTTAGGCCTGAACTAAA 57.252 29.630 17.99 18.24 42.58 1.85
4546 4661 8.000709 TCATCACATCAGAATTTATTTAGGCCT 58.999 33.333 11.78 11.78 0.00 5.19
4566 4681 9.593134 ACTTATCTTTCAAGACTGTATCATCAC 57.407 33.333 0.00 0.00 37.98 3.06
4661 4776 6.909357 GTCAGCACATTAAGAGTATTTGCATC 59.091 38.462 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.