Multiple sequence alignment - TraesCS2D01G169300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G169300 chr2D 100.000 4655 0 0 1 4655 113049503 113054157 0.000000e+00 8597.0
1 TraesCS2D01G169300 chr2D 80.892 157 24 3 4502 4655 421813471 421813624 8.180000e-23 119.0
2 TraesCS2D01G169300 chr2B 92.857 2268 101 30 385 2626 163712190 163714422 0.000000e+00 3234.0
3 TraesCS2D01G169300 chr2B 92.987 1654 53 27 2694 4308 163714591 163716220 0.000000e+00 2353.0
4 TraesCS2D01G169300 chr2B 97.368 38 1 0 4608 4645 64854806 64854769 1.080000e-06 65.8
5 TraesCS2D01G169300 chr2A 91.512 2321 98 41 392 2675 114571536 114569278 0.000000e+00 3103.0
6 TraesCS2D01G169300 chr2A 92.990 1341 36 24 2675 3995 114569211 114567909 0.000000e+00 1903.0
7 TraesCS2D01G169300 chr2A 83.301 509 41 26 3984 4478 114567723 114567245 3.330000e-116 429.0
8 TraesCS2D01G169300 chr1D 97.951 244 4 1 1 244 155739759 155739517 5.570000e-114 422.0
9 TraesCS2D01G169300 chr7D 95.113 266 9 4 1 265 513322322 513322584 2.590000e-112 416.0
10 TraesCS2D01G169300 chr7D 97.131 244 5 1 1 244 459615097 459615338 1.210000e-110 411.0
11 TraesCS2D01G169300 chr7D 96.735 245 6 2 1 244 180607648 180607891 1.560000e-109 407.0
12 TraesCS2D01G169300 chr7D 82.353 136 18 5 4345 4480 614934099 614934228 3.810000e-21 113.0
13 TraesCS2D01G169300 chr3D 97.541 244 5 1 1 244 15709897 15710139 2.590000e-112 416.0
14 TraesCS2D01G169300 chr5D 96.735 245 7 1 1 245 177557458 177557701 1.560000e-109 407.0
15 TraesCS2D01G169300 chr4D 96.721 244 8 0 1 244 352511899 352511656 1.560000e-109 407.0
16 TraesCS2D01G169300 chr4D 96.721 244 7 1 1 244 277621782 277622024 5.610000e-109 405.0
17 TraesCS2D01G169300 chr4D 96.708 243 8 0 1 243 455277639 455277397 5.610000e-109 405.0
18 TraesCS2D01G169300 chr5A 80.645 155 23 4 4505 4655 118696608 118696759 3.810000e-21 113.0
19 TraesCS2D01G169300 chr5A 79.130 115 14 7 4533 4645 572883299 572883193 2.320000e-08 71.3
20 TraesCS2D01G169300 chr6A 76.871 147 27 4 4348 4492 590091612 590091753 4.990000e-10 76.8
21 TraesCS2D01G169300 chr4B 87.500 64 8 0 4592 4655 428228737 428228800 1.800000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G169300 chr2D 113049503 113054157 4654 False 8597.000000 8597 100.000000 1 4655 1 chr2D.!!$F1 4654
1 TraesCS2D01G169300 chr2B 163712190 163716220 4030 False 2793.500000 3234 92.922000 385 4308 2 chr2B.!!$F1 3923
2 TraesCS2D01G169300 chr2A 114567245 114571536 4291 True 1811.666667 3103 89.267667 392 4478 3 chr2A.!!$R1 4086

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
155 156 0.040058 TTAGGTCCAGTCGGCCTACA 59.960 55.0 10.45 0.00 39.40 2.74 F
915 930 0.108567 GAGAGAAACACGAGCTCCCC 60.109 60.0 8.47 0.00 0.00 4.81 F
1189 1217 0.326238 ATTCCCGTCCCCTGCTTCTA 60.326 55.0 0.00 0.00 0.00 2.10 F
1595 1628 0.387239 GTTGGTGAGATTTGTGCGCC 60.387 55.0 4.18 0.00 0.00 6.53 F
2005 2045 0.457851 CTGAGGAAGACGAATCCGCT 59.542 55.0 9.85 0.00 42.03 5.52 F
3411 3568 0.793478 CTGGTCTAACAGCGACGACG 60.793 60.0 2.12 2.12 42.93 5.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1190 1218 0.108662 CCCAGCAATTCGAAAAGGGC 60.109 55.000 0.00 3.72 0.00 5.19 R
2803 2958 1.073923 GAGGTTGGCTTCTTGGGAGAA 59.926 52.381 0.00 0.00 39.54 2.87 R
3099 3256 0.734889 CCGAAGGCGATTGAAAGCAT 59.265 50.000 0.00 0.00 46.14 3.79 R
3565 3738 1.070134 GGGGAAAACCAAACCAGAAGC 59.930 52.381 0.00 0.00 42.91 3.86 R
3645 3822 1.167851 CAGCCACTAACCACACCATG 58.832 55.000 0.00 0.00 0.00 3.66 R
4631 5033 0.099436 GACGAGTTGGATGCCAATGC 59.901 55.000 1.79 0.00 45.80 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 3.151022 CCGACAGCTCCCTCCCTC 61.151 72.222 0.00 0.00 0.00 4.30
41 42 3.151022 CGACAGCTCCCTCCCTCC 61.151 72.222 0.00 0.00 0.00 4.30
42 43 2.766229 GACAGCTCCCTCCCTCCC 60.766 72.222 0.00 0.00 0.00 4.30
43 44 4.423209 ACAGCTCCCTCCCTCCCC 62.423 72.222 0.00 0.00 0.00 4.81
46 47 4.890306 GCTCCCTCCCTCCCCCTC 62.890 77.778 0.00 0.00 0.00 4.30
47 48 4.548513 CTCCCTCCCTCCCCCTCG 62.549 77.778 0.00 0.00 0.00 4.63
70 71 2.679092 TGGCCAGCCCAATCAGAG 59.321 61.111 0.00 0.00 41.82 3.35
71 72 2.123982 GGCCAGCCCAATCAGAGG 60.124 66.667 0.00 0.00 0.00 3.69
76 77 2.514824 GCCCAATCAGAGGCCGAC 60.515 66.667 0.00 0.00 43.76 4.79
77 78 2.202932 CCCAATCAGAGGCCGACG 60.203 66.667 0.00 0.00 0.00 5.12
78 79 2.892425 CCAATCAGAGGCCGACGC 60.892 66.667 0.00 0.00 0.00 5.19
79 80 3.257561 CAATCAGAGGCCGACGCG 61.258 66.667 3.53 3.53 35.02 6.01
80 81 3.760035 AATCAGAGGCCGACGCGT 61.760 61.111 13.85 13.85 35.02 6.01
81 82 3.989698 AATCAGAGGCCGACGCGTG 62.990 63.158 20.70 9.33 35.02 5.34
112 113 3.429141 CAGTCGGCCAGCAGCAAG 61.429 66.667 2.24 0.00 46.50 4.01
138 139 2.589540 CCTGCTGTGGGCCGATTA 59.410 61.111 0.00 0.00 40.92 1.75
139 140 1.524621 CCTGCTGTGGGCCGATTAG 60.525 63.158 0.00 0.00 40.92 1.73
140 141 1.524621 CTGCTGTGGGCCGATTAGG 60.525 63.158 0.00 0.00 44.97 2.69
141 142 2.257409 CTGCTGTGGGCCGATTAGGT 62.257 60.000 0.00 0.00 43.70 3.08
142 143 1.523938 GCTGTGGGCCGATTAGGTC 60.524 63.158 0.00 0.00 46.15 3.85
148 149 1.067582 GGCCGATTAGGTCCAGTCG 59.932 63.158 0.00 0.00 43.70 4.18
150 151 1.067582 CCGATTAGGTCCAGTCGGC 59.932 63.158 14.21 0.00 45.80 5.54
151 152 1.067582 CGATTAGGTCCAGTCGGCC 59.932 63.158 0.00 0.00 0.00 6.13
152 153 1.392710 CGATTAGGTCCAGTCGGCCT 61.393 60.000 0.00 0.00 40.58 5.19
153 154 1.700955 GATTAGGTCCAGTCGGCCTA 58.299 55.000 0.00 0.00 38.99 3.93
154 155 1.340568 GATTAGGTCCAGTCGGCCTAC 59.659 57.143 0.00 0.00 39.40 3.18
155 156 0.040058 TTAGGTCCAGTCGGCCTACA 59.960 55.000 10.45 0.00 39.40 2.74
156 157 0.395311 TAGGTCCAGTCGGCCTACAG 60.395 60.000 10.45 0.99 38.99 2.74
157 158 2.184579 GTCCAGTCGGCCTACAGC 59.815 66.667 10.45 0.00 42.60 4.40
158 159 3.449227 TCCAGTCGGCCTACAGCG 61.449 66.667 10.45 0.00 45.17 5.18
159 160 4.514577 CCAGTCGGCCTACAGCGG 62.515 72.222 10.45 3.28 45.17 5.52
160 161 4.514577 CAGTCGGCCTACAGCGGG 62.515 72.222 10.45 0.00 45.17 6.13
173 174 4.825252 GCGGGCCGACGGTGTATT 62.825 66.667 33.44 0.00 0.00 1.89
174 175 2.806929 CGGGCCGACGGTGTATTA 59.193 61.111 24.41 0.00 0.00 0.98
175 176 1.364901 CGGGCCGACGGTGTATTAT 59.635 57.895 24.41 0.00 0.00 1.28
176 177 0.249573 CGGGCCGACGGTGTATTATT 60.250 55.000 24.41 0.00 0.00 1.40
177 178 1.807377 CGGGCCGACGGTGTATTATTT 60.807 52.381 24.41 0.00 0.00 1.40
178 179 2.291365 GGGCCGACGGTGTATTATTTT 58.709 47.619 16.73 0.00 0.00 1.82
179 180 2.684374 GGGCCGACGGTGTATTATTTTT 59.316 45.455 16.73 0.00 0.00 1.94
180 181 3.487879 GGGCCGACGGTGTATTATTTTTG 60.488 47.826 16.73 0.00 0.00 2.44
181 182 3.374678 GGCCGACGGTGTATTATTTTTGA 59.625 43.478 16.73 0.00 0.00 2.69
182 183 4.142643 GGCCGACGGTGTATTATTTTTGAA 60.143 41.667 16.73 0.00 0.00 2.69
183 184 5.392286 GCCGACGGTGTATTATTTTTGAAA 58.608 37.500 16.73 0.00 0.00 2.69
184 185 5.857517 GCCGACGGTGTATTATTTTTGAAAA 59.142 36.000 16.73 0.00 0.00 2.29
185 186 6.528774 GCCGACGGTGTATTATTTTTGAAAAT 59.471 34.615 16.73 6.88 41.24 1.82
186 187 7.062488 GCCGACGGTGTATTATTTTTGAAAATT 59.938 33.333 16.73 0.00 39.24 1.82
187 188 9.557338 CCGACGGTGTATTATTTTTGAAAATTA 57.443 29.630 5.48 0.00 39.24 1.40
266 267 6.743575 AAAATAGCGCCAATATAGACATCC 57.256 37.500 2.29 0.00 0.00 3.51
267 268 5.420725 AATAGCGCCAATATAGACATCCA 57.579 39.130 2.29 0.00 0.00 3.41
268 269 3.988976 AGCGCCAATATAGACATCCAT 57.011 42.857 2.29 0.00 0.00 3.41
269 270 3.866651 AGCGCCAATATAGACATCCATC 58.133 45.455 2.29 0.00 0.00 3.51
270 271 2.939103 GCGCCAATATAGACATCCATCC 59.061 50.000 0.00 0.00 0.00 3.51
271 272 3.619733 GCGCCAATATAGACATCCATCCA 60.620 47.826 0.00 0.00 0.00 3.41
272 273 4.578871 CGCCAATATAGACATCCATCCAA 58.421 43.478 0.00 0.00 0.00 3.53
273 274 5.003160 CGCCAATATAGACATCCATCCAAA 58.997 41.667 0.00 0.00 0.00 3.28
274 275 5.106555 CGCCAATATAGACATCCATCCAAAC 60.107 44.000 0.00 0.00 0.00 2.93
275 276 5.769662 GCCAATATAGACATCCATCCAAACA 59.230 40.000 0.00 0.00 0.00 2.83
276 277 6.435277 GCCAATATAGACATCCATCCAAACAT 59.565 38.462 0.00 0.00 0.00 2.71
277 278 7.362401 GCCAATATAGACATCCATCCAAACATC 60.362 40.741 0.00 0.00 0.00 3.06
278 279 7.666804 CCAATATAGACATCCATCCAAACATCA 59.333 37.037 0.00 0.00 0.00 3.07
279 280 9.070179 CAATATAGACATCCATCCAAACATCAA 57.930 33.333 0.00 0.00 0.00 2.57
280 281 6.949352 ATAGACATCCATCCAAACATCAAC 57.051 37.500 0.00 0.00 0.00 3.18
281 282 4.927049 AGACATCCATCCAAACATCAACT 58.073 39.130 0.00 0.00 0.00 3.16
282 283 6.065976 AGACATCCATCCAAACATCAACTA 57.934 37.500 0.00 0.00 0.00 2.24
283 284 6.484288 AGACATCCATCCAAACATCAACTAA 58.516 36.000 0.00 0.00 0.00 2.24
284 285 6.947733 AGACATCCATCCAAACATCAACTAAA 59.052 34.615 0.00 0.00 0.00 1.85
285 286 7.451255 AGACATCCATCCAAACATCAACTAAAA 59.549 33.333 0.00 0.00 0.00 1.52
286 287 7.961351 ACATCCATCCAAACATCAACTAAAAA 58.039 30.769 0.00 0.00 0.00 1.94
322 323 8.635765 AAAAATCAAATAGAAGTAGCACTCCA 57.364 30.769 0.00 0.00 0.00 3.86
323 324 8.635765 AAAATCAAATAGAAGTAGCACTCCAA 57.364 30.769 0.00 0.00 0.00 3.53
324 325 7.856145 AATCAAATAGAAGTAGCACTCCAAG 57.144 36.000 0.00 0.00 0.00 3.61
325 326 6.360370 TCAAATAGAAGTAGCACTCCAAGT 57.640 37.500 0.00 0.00 0.00 3.16
326 327 6.769512 TCAAATAGAAGTAGCACTCCAAGTT 58.230 36.000 0.00 0.00 0.00 2.66
327 328 7.903145 TCAAATAGAAGTAGCACTCCAAGTTA 58.097 34.615 0.00 0.00 0.00 2.24
328 329 8.372459 TCAAATAGAAGTAGCACTCCAAGTTAA 58.628 33.333 0.00 0.00 0.00 2.01
329 330 8.999431 CAAATAGAAGTAGCACTCCAAGTTAAA 58.001 33.333 0.00 0.00 0.00 1.52
330 331 9.569122 AAATAGAAGTAGCACTCCAAGTTAAAA 57.431 29.630 0.00 0.00 0.00 1.52
331 332 9.569122 AATAGAAGTAGCACTCCAAGTTAAAAA 57.431 29.630 0.00 0.00 0.00 1.94
332 333 7.497925 AGAAGTAGCACTCCAAGTTAAAAAG 57.502 36.000 0.00 0.00 0.00 2.27
333 334 6.486993 AGAAGTAGCACTCCAAGTTAAAAAGG 59.513 38.462 0.00 0.00 0.00 3.11
334 335 5.937111 AGTAGCACTCCAAGTTAAAAAGGA 58.063 37.500 0.00 0.00 0.00 3.36
335 336 6.362248 AGTAGCACTCCAAGTTAAAAAGGAA 58.638 36.000 0.00 0.00 0.00 3.36
336 337 5.515797 AGCACTCCAAGTTAAAAAGGAAC 57.484 39.130 0.00 0.00 0.00 3.62
337 338 4.036380 AGCACTCCAAGTTAAAAAGGAACG 59.964 41.667 0.00 0.00 31.85 3.95
338 339 4.791734 GCACTCCAAGTTAAAAAGGAACGG 60.792 45.833 0.00 0.00 31.85 4.44
339 340 4.577283 CACTCCAAGTTAAAAAGGAACGGA 59.423 41.667 0.00 0.00 31.85 4.69
340 341 5.066764 CACTCCAAGTTAAAAAGGAACGGAA 59.933 40.000 0.00 0.00 31.85 4.30
341 342 5.831525 ACTCCAAGTTAAAAAGGAACGGAAT 59.168 36.000 0.00 0.00 31.85 3.01
342 343 6.999871 ACTCCAAGTTAAAAAGGAACGGAATA 59.000 34.615 0.00 0.00 31.85 1.75
343 344 7.503230 ACTCCAAGTTAAAAAGGAACGGAATAA 59.497 33.333 0.00 0.00 31.85 1.40
344 345 7.878036 TCCAAGTTAAAAAGGAACGGAATAAG 58.122 34.615 0.00 0.00 31.85 1.73
345 346 6.584942 CCAAGTTAAAAAGGAACGGAATAAGC 59.415 38.462 0.00 0.00 31.85 3.09
346 347 5.934921 AGTTAAAAAGGAACGGAATAAGCG 58.065 37.500 0.00 0.00 31.85 4.68
347 348 2.913777 AAAAGGAACGGAATAAGCGC 57.086 45.000 0.00 0.00 0.00 5.92
348 349 1.816074 AAAGGAACGGAATAAGCGCA 58.184 45.000 11.47 0.00 0.00 6.09
349 350 1.816074 AAGGAACGGAATAAGCGCAA 58.184 45.000 11.47 0.00 0.00 4.85
350 351 1.369625 AGGAACGGAATAAGCGCAAG 58.630 50.000 11.47 0.00 43.44 4.01
351 352 1.066430 AGGAACGGAATAAGCGCAAGA 60.066 47.619 11.47 0.00 43.02 3.02
352 353 1.940613 GGAACGGAATAAGCGCAAGAT 59.059 47.619 11.47 0.00 43.02 2.40
353 354 2.286418 GGAACGGAATAAGCGCAAGATG 60.286 50.000 11.47 0.00 43.02 2.90
354 355 0.657840 ACGGAATAAGCGCAAGATGC 59.342 50.000 11.47 0.00 40.69 3.91
355 356 0.657312 CGGAATAAGCGCAAGATGCA 59.343 50.000 11.47 0.00 45.36 3.96
356 357 1.063912 CGGAATAAGCGCAAGATGCAA 59.936 47.619 11.47 0.00 45.36 4.08
357 358 2.477694 CGGAATAAGCGCAAGATGCAAA 60.478 45.455 11.47 0.00 45.36 3.68
358 359 3.709987 GGAATAAGCGCAAGATGCAAAT 58.290 40.909 11.47 0.00 45.36 2.32
359 360 3.488310 GGAATAAGCGCAAGATGCAAATG 59.512 43.478 11.47 0.00 45.36 2.32
360 361 3.788333 ATAAGCGCAAGATGCAAATGT 57.212 38.095 11.47 0.00 45.36 2.71
361 362 4.898829 ATAAGCGCAAGATGCAAATGTA 57.101 36.364 11.47 0.00 45.36 2.29
362 363 2.549633 AGCGCAAGATGCAAATGTAC 57.450 45.000 11.47 0.00 45.36 2.90
363 364 2.086869 AGCGCAAGATGCAAATGTACT 58.913 42.857 11.47 0.00 45.36 2.73
364 365 3.270027 AGCGCAAGATGCAAATGTACTA 58.730 40.909 11.47 0.00 45.36 1.82
365 366 3.879295 AGCGCAAGATGCAAATGTACTAT 59.121 39.130 11.47 0.00 45.36 2.12
366 367 3.970610 GCGCAAGATGCAAATGTACTATG 59.029 43.478 0.30 0.00 45.36 2.23
367 368 4.530388 CGCAAGATGCAAATGTACTATGG 58.470 43.478 2.99 0.00 45.36 2.74
368 369 4.273235 CGCAAGATGCAAATGTACTATGGA 59.727 41.667 2.99 0.00 45.36 3.41
369 370 5.220835 CGCAAGATGCAAATGTACTATGGAA 60.221 40.000 2.99 0.00 45.36 3.53
370 371 6.563422 GCAAGATGCAAATGTACTATGGAAA 58.437 36.000 0.00 0.00 44.26 3.13
371 372 6.473455 GCAAGATGCAAATGTACTATGGAAAC 59.527 38.462 0.00 0.00 44.26 2.78
372 373 6.699575 AGATGCAAATGTACTATGGAAACC 57.300 37.500 0.00 0.00 0.00 3.27
373 374 5.594317 AGATGCAAATGTACTATGGAAACCC 59.406 40.000 0.00 0.00 0.00 4.11
374 375 4.929479 TGCAAATGTACTATGGAAACCCT 58.071 39.130 0.00 0.00 0.00 4.34
375 376 6.068461 TGCAAATGTACTATGGAAACCCTA 57.932 37.500 0.00 0.00 0.00 3.53
376 377 6.119536 TGCAAATGTACTATGGAAACCCTAG 58.880 40.000 0.00 0.00 0.00 3.02
377 378 6.069905 TGCAAATGTACTATGGAAACCCTAGA 60.070 38.462 7.01 0.00 0.00 2.43
378 379 6.826741 GCAAATGTACTATGGAAACCCTAGAA 59.173 38.462 7.01 0.00 0.00 2.10
379 380 7.338449 GCAAATGTACTATGGAAACCCTAGAAA 59.662 37.037 7.01 0.00 0.00 2.52
380 381 9.238368 CAAATGTACTATGGAAACCCTAGAAAA 57.762 33.333 7.01 0.00 0.00 2.29
381 382 9.816787 AAATGTACTATGGAAACCCTAGAAAAA 57.183 29.630 7.01 0.00 0.00 1.94
382 383 9.990868 AATGTACTATGGAAACCCTAGAAAAAT 57.009 29.630 7.01 0.00 0.00 1.82
383 384 8.801882 TGTACTATGGAAACCCTAGAAAAATG 57.198 34.615 7.01 0.00 0.00 2.32
453 454 2.128853 AAATCGTGCAACAGCCACCG 62.129 55.000 0.00 0.00 35.74 4.94
491 492 2.143122 CCCGTAATCCCATCATTGACG 58.857 52.381 0.00 0.00 0.00 4.35
496 497 3.315544 TCCCATCATTGACGGGAGA 57.684 52.632 16.43 0.00 39.31 3.71
500 501 0.877649 CATCATTGACGGGAGAGGCG 60.878 60.000 0.00 0.00 0.00 5.52
549 556 2.757056 GGCAACGGTAATGGACGCC 61.757 63.158 0.00 0.00 0.00 5.68
912 927 4.688511 TTAGAGAGAGAAACACGAGCTC 57.311 45.455 2.73 2.73 0.00 4.09
913 928 1.816224 AGAGAGAGAAACACGAGCTCC 59.184 52.381 8.47 0.00 0.00 4.70
914 929 0.892063 AGAGAGAAACACGAGCTCCC 59.108 55.000 8.47 0.00 0.00 4.30
915 930 0.108567 GAGAGAAACACGAGCTCCCC 60.109 60.000 8.47 0.00 0.00 4.81
916 931 1.079057 GAGAAACACGAGCTCCCCC 60.079 63.158 8.47 0.00 0.00 5.40
917 932 1.827399 GAGAAACACGAGCTCCCCCA 61.827 60.000 8.47 0.00 0.00 4.96
918 933 1.671379 GAAACACGAGCTCCCCCAC 60.671 63.158 8.47 0.00 0.00 4.61
962 990 4.540906 AGGTAGTAGAGAGAGAAACCCAGA 59.459 45.833 0.00 0.00 0.00 3.86
968 996 0.615850 GAGAGAAACCCAGACCCAGG 59.384 60.000 0.00 0.00 0.00 4.45
996 1024 4.463879 CCCCTGCACCGAGCTCAG 62.464 72.222 15.40 4.66 45.94 3.35
997 1025 4.463879 CCCTGCACCGAGCTCAGG 62.464 72.222 15.40 17.55 45.94 3.86
1002 1030 3.449227 CACCGAGCTCAGGCCGTA 61.449 66.667 20.11 0.00 39.73 4.02
1003 1031 3.141488 ACCGAGCTCAGGCCGTAG 61.141 66.667 20.11 0.00 39.73 3.51
1004 1032 4.577246 CCGAGCTCAGGCCGTAGC 62.577 72.222 20.99 20.99 39.73 3.58
1005 1033 4.914420 CGAGCTCAGGCCGTAGCG 62.914 72.222 21.90 9.12 43.63 4.26
1189 1217 0.326238 ATTCCCGTCCCCTGCTTCTA 60.326 55.000 0.00 0.00 0.00 2.10
1190 1218 0.976073 TTCCCGTCCCCTGCTTCTAG 60.976 60.000 0.00 0.00 0.00 2.43
1378 1410 1.696832 GCTAGTAGTTGCGTGCTGCC 61.697 60.000 0.00 0.00 45.60 4.85
1428 1460 1.156736 CGATTTCGGGCTGTGTTTCT 58.843 50.000 0.00 0.00 35.37 2.52
1458 1490 1.450312 AGATTTGGGCTTCGGCGAG 60.450 57.895 10.46 5.82 42.91 5.03
1494 1526 4.838152 TCATGCCGCCTCCTTCGC 62.838 66.667 0.00 0.00 0.00 4.70
1509 1541 0.734942 TTCGCGAATCGTTGGTCTCC 60.735 55.000 19.38 0.00 39.67 3.71
1559 1592 1.760613 TGTCTAGGGAAATACGCCTGG 59.239 52.381 0.00 0.00 0.00 4.45
1587 1620 6.098124 TGAATTTCTGTTTGGTTGGTGAGATT 59.902 34.615 0.00 0.00 0.00 2.40
1595 1628 0.387239 GTTGGTGAGATTTGTGCGCC 60.387 55.000 4.18 0.00 0.00 6.53
1632 1665 1.068741 GGATAGGCTTGTAGGGTCACG 59.931 57.143 0.00 0.00 0.00 4.35
1783 1823 4.865925 CACCCTGATTTGTGCATAAACATG 59.134 41.667 11.07 8.29 0.00 3.21
1800 1840 9.810231 CATAAACATGTTAATTTGCTTTGTTCC 57.190 29.630 12.39 0.00 0.00 3.62
1841 1881 6.597280 AGAATCTTGTCACAAAGAGGCTTATC 59.403 38.462 0.00 0.00 39.47 1.75
1996 2036 0.534873 GAGGTGAGGCTGAGGAAGAC 59.465 60.000 0.00 0.00 0.00 3.01
2005 2045 0.457851 CTGAGGAAGACGAATCCGCT 59.542 55.000 9.85 0.00 42.03 5.52
2057 2097 5.105997 GCTTCAAAGAATTATCAGGTGCTGT 60.106 40.000 0.00 0.00 32.61 4.40
2108 2152 7.040201 ACAGAACAGAAACATGCTGATTAATGT 60.040 33.333 5.90 0.00 38.66 2.71
2110 2154 5.404946 ACAGAAACATGCTGATTAATGTGC 58.595 37.500 5.90 0.00 37.11 4.57
2138 2182 3.097877 TCGATCTGCGATATTGCAAGT 57.902 42.857 18.27 9.86 45.59 3.16
2141 2185 3.001634 CGATCTGCGATATTGCAAGTTGT 59.998 43.478 18.27 3.47 45.74 3.32
2171 2215 4.808895 TGTTATGCATTGCTAGTAAGGACG 59.191 41.667 3.54 0.00 0.00 4.79
2226 2270 4.737855 TGATTGAGAGGGTAGCACTTAC 57.262 45.455 0.00 0.00 0.00 2.34
2249 2293 3.303351 AGTATCCCCCTGATTTGCTTG 57.697 47.619 0.00 0.00 34.76 4.01
2499 2543 4.100653 GTGGGATTTAGGTAGTCAGGTACC 59.899 50.000 2.73 2.73 42.68 3.34
2535 2583 5.079689 TCCGTTCACAAGATACAGCATTA 57.920 39.130 0.00 0.00 0.00 1.90
2566 2614 4.455533 GGTGTAGTGCTTCATGACATTTCA 59.544 41.667 0.00 0.00 35.73 2.69
2584 2632 7.593825 ACATTTCATAAAAGTAGACCAACTGC 58.406 34.615 0.00 0.00 0.00 4.40
2599 2647 5.193679 ACCAACTGCTTCCATAATTAGGAC 58.806 41.667 0.00 0.00 34.19 3.85
2600 2648 5.044846 ACCAACTGCTTCCATAATTAGGACT 60.045 40.000 0.00 0.00 34.19 3.85
2603 2651 6.808321 ACTGCTTCCATAATTAGGACTACA 57.192 37.500 0.00 0.83 34.19 2.74
2604 2652 6.583562 ACTGCTTCCATAATTAGGACTACAC 58.416 40.000 0.00 0.00 34.19 2.90
2605 2653 6.156256 ACTGCTTCCATAATTAGGACTACACA 59.844 38.462 0.00 0.00 34.19 3.72
2606 2654 7.136822 TGCTTCCATAATTAGGACTACACAT 57.863 36.000 0.00 0.00 34.19 3.21
2696 2849 5.044558 GGTACGGTTGCAAAATTGAAAAGA 58.955 37.500 0.00 0.00 0.00 2.52
2708 2861 7.620215 CAAAATTGAAAAGAACATTTCGCTCA 58.380 30.769 0.00 0.00 41.24 4.26
2733 2886 2.603021 AGACTTCCTGACAGAGCTCAA 58.397 47.619 17.77 0.00 0.00 3.02
2848 3003 2.669569 GAGGTGGCAAAGCAGCGA 60.670 61.111 0.00 0.00 34.64 4.93
2917 3072 2.349817 GCAGGTATCCAATGCGAAATCG 60.350 50.000 0.00 0.00 43.27 3.34
3063 3218 3.637769 GTCTCCTCCTAATCTGGACACT 58.362 50.000 0.00 0.00 31.94 3.55
3066 3221 1.765314 CCTCCTAATCTGGACACTGGG 59.235 57.143 0.00 0.00 31.94 4.45
3097 3254 4.202295 CCAGCTCTGAATGGAGTGCTTATA 60.202 45.833 3.08 0.00 40.07 0.98
3098 3255 5.512749 CCAGCTCTGAATGGAGTGCTTATAT 60.513 44.000 3.08 0.00 40.07 0.86
3099 3256 6.295518 CCAGCTCTGAATGGAGTGCTTATATA 60.296 42.308 3.08 0.00 40.07 0.86
3100 3257 7.329499 CAGCTCTGAATGGAGTGCTTATATAT 58.671 38.462 0.00 0.00 40.07 0.86
3111 3268 7.118245 TGGAGTGCTTATATATGCTTTCAATCG 59.882 37.037 18.37 0.00 0.00 3.34
3113 3270 6.024049 GTGCTTATATATGCTTTCAATCGCC 58.976 40.000 18.37 0.00 0.00 5.54
3319 3476 2.486966 GGCAGCAACATCTTCGCC 59.513 61.111 0.00 0.00 0.00 5.54
3411 3568 0.793478 CTGGTCTAACAGCGACGACG 60.793 60.000 2.12 2.12 42.93 5.12
3415 3572 0.800631 TCTAACAGCGACGACGACAT 59.199 50.000 12.29 0.00 42.66 3.06
3565 3738 1.137675 TGGGACTGATCTGCGATTGAG 59.862 52.381 0.00 0.00 0.00 3.02
3598 3772 3.314693 GTTTTCCCCCTTTCCTTTTCCT 58.685 45.455 0.00 0.00 0.00 3.36
3645 3822 6.018669 CCTGTTCTCGCTGTTAATTAATCCTC 60.019 42.308 0.31 0.00 0.00 3.71
3701 3878 0.319211 TGATGGCTCGTTCGTTCGTT 60.319 50.000 0.00 0.00 0.00 3.85
3815 3997 3.482156 AGTGAGTGATGTTTCAGCTGT 57.518 42.857 14.67 0.00 30.85 4.40
3897 4083 2.369629 CGTCGCATGGTTCGTTCGT 61.370 57.895 0.00 0.00 0.00 3.85
3924 4110 0.764890 AGCAGTGCCACCTAACTTCA 59.235 50.000 12.58 0.00 0.00 3.02
4200 4596 0.393808 GCATGGGATTGTGTACCGGT 60.394 55.000 13.98 13.98 30.92 5.28
4252 4648 0.608035 CAGTTGTGGGCATACGGGTT 60.608 55.000 0.00 0.00 0.00 4.11
4275 4674 5.901413 TTTCTCATGATGAATAGCTCCCT 57.099 39.130 0.00 0.00 0.00 4.20
4276 4675 5.480642 TTCTCATGATGAATAGCTCCCTC 57.519 43.478 0.00 0.00 0.00 4.30
4277 4676 3.837146 TCTCATGATGAATAGCTCCCTCC 59.163 47.826 0.00 0.00 0.00 4.30
4278 4677 2.909006 TCATGATGAATAGCTCCCTCCC 59.091 50.000 0.00 0.00 0.00 4.30
4280 4679 0.988063 GATGAATAGCTCCCTCCCCC 59.012 60.000 0.00 0.00 0.00 5.40
4281 4680 0.271927 ATGAATAGCTCCCTCCCCCA 59.728 55.000 0.00 0.00 0.00 4.96
4282 4681 0.271927 TGAATAGCTCCCTCCCCCAT 59.728 55.000 0.00 0.00 0.00 4.00
4283 4682 0.988063 GAATAGCTCCCTCCCCCATC 59.012 60.000 0.00 0.00 0.00 3.51
4285 4684 0.118144 ATAGCTCCCTCCCCCATCTC 59.882 60.000 0.00 0.00 0.00 2.75
4286 4685 2.037304 TAGCTCCCTCCCCCATCTCC 62.037 65.000 0.00 0.00 0.00 3.71
4288 4687 1.004758 CTCCCTCCCCCATCTCCAA 59.995 63.158 0.00 0.00 0.00 3.53
4289 4688 1.004758 TCCCTCCCCCATCTCCAAG 59.995 63.158 0.00 0.00 0.00 3.61
4297 4696 2.158549 CCCCCATCTCCAAGAATCTTCC 60.159 54.545 0.00 0.00 0.00 3.46
4298 4697 2.511218 CCCCATCTCCAAGAATCTTCCA 59.489 50.000 0.00 0.00 0.00 3.53
4308 4707 1.916181 AGAATCTTCCACACCCGGAAT 59.084 47.619 0.73 0.00 44.06 3.01
4309 4708 3.112263 AGAATCTTCCACACCCGGAATA 58.888 45.455 0.73 0.00 44.06 1.75
4310 4709 3.134804 AGAATCTTCCACACCCGGAATAG 59.865 47.826 0.73 0.00 44.06 1.73
4311 4710 1.946984 TCTTCCACACCCGGAATAGT 58.053 50.000 0.73 0.00 44.06 2.12
4312 4711 3.104519 TCTTCCACACCCGGAATAGTA 57.895 47.619 0.73 0.00 44.06 1.82
4313 4712 3.649843 TCTTCCACACCCGGAATAGTAT 58.350 45.455 0.73 0.00 44.06 2.12
4314 4713 3.386726 TCTTCCACACCCGGAATAGTATG 59.613 47.826 0.73 0.00 44.06 2.39
4315 4714 2.043992 TCCACACCCGGAATAGTATGG 58.956 52.381 0.73 0.14 29.93 2.74
4316 4715 2.043992 CCACACCCGGAATAGTATGGA 58.956 52.381 0.73 0.00 0.00 3.41
4317 4716 2.037251 CCACACCCGGAATAGTATGGAG 59.963 54.545 0.73 0.00 0.00 3.86
4318 4717 2.963101 CACACCCGGAATAGTATGGAGA 59.037 50.000 0.73 0.00 0.00 3.71
4320 4719 3.578716 ACACCCGGAATAGTATGGAGATG 59.421 47.826 0.73 0.00 0.00 2.90
4322 4721 4.770531 CACCCGGAATAGTATGGAGATGTA 59.229 45.833 0.73 0.00 0.00 2.29
4323 4722 5.422331 CACCCGGAATAGTATGGAGATGTAT 59.578 44.000 0.73 0.00 0.00 2.29
4324 4723 5.422331 ACCCGGAATAGTATGGAGATGTATG 59.578 44.000 0.73 0.00 0.00 2.39
4325 4724 5.352284 CCGGAATAGTATGGAGATGTATGC 58.648 45.833 0.00 0.00 0.00 3.14
4326 4725 5.037385 CGGAATAGTATGGAGATGTATGCG 58.963 45.833 0.00 0.00 0.00 4.73
4327 4726 5.352284 GGAATAGTATGGAGATGTATGCGG 58.648 45.833 0.00 0.00 0.00 5.69
4330 4729 4.527509 AGTATGGAGATGTATGCGGAAG 57.472 45.455 0.00 0.00 0.00 3.46
4358 4759 6.072342 GCTCAAATCTGGCCAATTTGAATTTT 60.072 34.615 32.36 16.04 46.74 1.82
4360 4761 8.915057 TCAAATCTGGCCAATTTGAATTTTAA 57.085 26.923 31.78 19.17 45.40 1.52
4387 4788 5.456822 GCATAGCAATAGCAAGTTAAAGTGC 59.543 40.000 3.89 3.89 45.49 4.40
4389 4790 3.751175 AGCAATAGCAAGTTAAAGTGCGA 59.249 39.130 6.09 2.29 45.62 5.10
4391 4792 5.095490 GCAATAGCAAGTTAAAGTGCGATT 58.905 37.500 11.71 11.71 43.88 3.34
4392 4793 5.572896 GCAATAGCAAGTTAAAGTGCGATTT 59.427 36.000 13.75 4.91 41.44 2.17
4393 4794 6.089417 GCAATAGCAAGTTAAAGTGCGATTTT 59.911 34.615 13.75 3.14 41.44 1.82
4394 4795 7.272515 GCAATAGCAAGTTAAAGTGCGATTTTA 59.727 33.333 13.75 0.84 41.44 1.52
4401 4802 9.128107 CAAGTTAAAGTGCGATTTTATTCACAT 57.872 29.630 0.00 0.00 32.25 3.21
4414 4815 6.918892 TTTATTCACATAACACCCGATCAG 57.081 37.500 0.00 0.00 0.00 2.90
4416 4817 4.545208 TTCACATAACACCCGATCAGAA 57.455 40.909 0.00 0.00 0.00 3.02
4417 4818 3.857052 TCACATAACACCCGATCAGAAC 58.143 45.455 0.00 0.00 0.00 3.01
4418 4819 2.936498 CACATAACACCCGATCAGAACC 59.064 50.000 0.00 0.00 0.00 3.62
4419 4820 2.569853 ACATAACACCCGATCAGAACCA 59.430 45.455 0.00 0.00 0.00 3.67
4423 4824 2.938838 ACACCCGATCAGAACCAAAAA 58.061 42.857 0.00 0.00 0.00 1.94
4424 4825 2.621526 ACACCCGATCAGAACCAAAAAC 59.378 45.455 0.00 0.00 0.00 2.43
4429 4830 4.298332 CCGATCAGAACCAAAAACAAAGG 58.702 43.478 0.00 0.00 0.00 3.11
4430 4831 3.735746 CGATCAGAACCAAAAACAAAGGC 59.264 43.478 0.00 0.00 0.00 4.35
4431 4832 3.157932 TCAGAACCAAAAACAAAGGCG 57.842 42.857 0.00 0.00 0.00 5.52
4442 4844 3.764885 AACAAAGGCGATGTTCATAGC 57.235 42.857 8.88 8.88 36.28 2.97
4455 4857 3.376859 TGTTCATAGCTTTTACATGCCCG 59.623 43.478 0.00 0.00 0.00 6.13
4463 4865 1.934589 TTTACATGCCCGATCACGAG 58.065 50.000 0.00 0.00 42.66 4.18
4465 4867 1.107945 TACATGCCCGATCACGAGAA 58.892 50.000 0.00 0.00 42.66 2.87
4475 4877 5.517054 GCCCGATCACGAGAATATCTTAATC 59.483 44.000 0.00 0.00 42.66 1.75
4478 4880 7.362142 CCCGATCACGAGAATATCTTAATCTGA 60.362 40.741 0.00 0.00 42.66 3.27
4479 4881 7.483375 CCGATCACGAGAATATCTTAATCTGAC 59.517 40.741 0.00 0.00 42.66 3.51
4480 4882 8.233868 CGATCACGAGAATATCTTAATCTGACT 58.766 37.037 0.00 0.00 42.66 3.41
4488 4890 9.632807 AGAATATCTTAATCTGACTATTCGTGC 57.367 33.333 0.00 0.00 33.13 5.34
4489 4891 9.411801 GAATATCTTAATCTGACTATTCGTGCA 57.588 33.333 0.00 0.00 0.00 4.57
4490 4892 9.764363 AATATCTTAATCTGACTATTCGTGCAA 57.236 29.630 0.00 0.00 0.00 4.08
4491 4893 9.764363 ATATCTTAATCTGACTATTCGTGCAAA 57.236 29.630 0.00 0.00 0.00 3.68
4492 4894 8.668510 ATCTTAATCTGACTATTCGTGCAAAT 57.331 30.769 0.00 0.00 0.00 2.32
4493 4895 8.131455 TCTTAATCTGACTATTCGTGCAAATC 57.869 34.615 0.00 0.00 0.00 2.17
4494 4896 7.981789 TCTTAATCTGACTATTCGTGCAAATCT 59.018 33.333 0.00 0.00 0.00 2.40
4495 4897 5.980698 ATCTGACTATTCGTGCAAATCTG 57.019 39.130 0.00 0.00 0.00 2.90
4496 4898 5.072040 TCTGACTATTCGTGCAAATCTGA 57.928 39.130 0.00 0.00 0.00 3.27
4497 4899 5.105063 TCTGACTATTCGTGCAAATCTGAG 58.895 41.667 0.00 0.00 0.00 3.35
4498 4900 3.618594 TGACTATTCGTGCAAATCTGAGC 59.381 43.478 0.00 0.00 0.00 4.26
4499 4901 2.939103 ACTATTCGTGCAAATCTGAGCC 59.061 45.455 0.00 0.00 0.00 4.70
4500 4902 2.119801 ATTCGTGCAAATCTGAGCCT 57.880 45.000 0.00 0.00 0.00 4.58
4501 4903 1.442769 TTCGTGCAAATCTGAGCCTC 58.557 50.000 0.00 0.00 0.00 4.70
4502 4904 0.391661 TCGTGCAAATCTGAGCCTCC 60.392 55.000 0.00 0.00 0.00 4.30
4503 4905 0.674581 CGTGCAAATCTGAGCCTCCA 60.675 55.000 0.00 0.00 0.00 3.86
4504 4906 0.807496 GTGCAAATCTGAGCCTCCAC 59.193 55.000 0.00 0.00 0.00 4.02
4505 4907 0.674581 TGCAAATCTGAGCCTCCACG 60.675 55.000 0.00 0.00 0.00 4.94
4506 4908 1.986575 GCAAATCTGAGCCTCCACGC 61.987 60.000 0.00 0.00 0.00 5.34
4507 4909 0.392193 CAAATCTGAGCCTCCACGCT 60.392 55.000 0.00 0.00 43.42 5.07
4513 4915 2.283532 AGCCTCCACGCTCACTCT 60.284 61.111 0.00 0.00 32.06 3.24
4514 4916 2.125753 GCCTCCACGCTCACTCTG 60.126 66.667 0.00 0.00 0.00 3.35
4515 4917 2.936912 GCCTCCACGCTCACTCTGT 61.937 63.158 0.00 0.00 0.00 3.41
4516 4918 1.214062 CCTCCACGCTCACTCTGTC 59.786 63.158 0.00 0.00 0.00 3.51
4517 4919 1.527433 CCTCCACGCTCACTCTGTCA 61.527 60.000 0.00 0.00 0.00 3.58
4518 4920 0.387878 CTCCACGCTCACTCTGTCAC 60.388 60.000 0.00 0.00 0.00 3.67
4519 4921 1.373497 CCACGCTCACTCTGTCACC 60.373 63.158 0.00 0.00 0.00 4.02
4520 4922 1.730902 CACGCTCACTCTGTCACCG 60.731 63.158 0.00 0.00 0.00 4.94
4521 4923 1.897137 ACGCTCACTCTGTCACCGA 60.897 57.895 0.00 0.00 0.00 4.69
4522 4924 1.442857 CGCTCACTCTGTCACCGAC 60.443 63.158 0.00 0.00 0.00 4.79
4523 4925 1.857318 CGCTCACTCTGTCACCGACT 61.857 60.000 0.00 0.00 33.15 4.18
4524 4926 0.109504 GCTCACTCTGTCACCGACTC 60.110 60.000 0.00 0.00 33.15 3.36
4525 4927 0.523966 CTCACTCTGTCACCGACTCC 59.476 60.000 0.00 0.00 33.15 3.85
4526 4928 0.110678 TCACTCTGTCACCGACTCCT 59.889 55.000 0.00 0.00 33.15 3.69
4527 4929 0.962489 CACTCTGTCACCGACTCCTT 59.038 55.000 0.00 0.00 33.15 3.36
4528 4930 1.068194 CACTCTGTCACCGACTCCTTC 60.068 57.143 0.00 0.00 33.15 3.46
4529 4931 1.202952 ACTCTGTCACCGACTCCTTCT 60.203 52.381 0.00 0.00 33.15 2.85
4530 4932 1.470890 CTCTGTCACCGACTCCTTCTC 59.529 57.143 0.00 0.00 33.15 2.87
4531 4933 1.202891 TCTGTCACCGACTCCTTCTCA 60.203 52.381 0.00 0.00 33.15 3.27
4532 4934 1.201181 CTGTCACCGACTCCTTCTCAG 59.799 57.143 0.00 0.00 33.15 3.35
4533 4935 1.249407 GTCACCGACTCCTTCTCAGT 58.751 55.000 0.00 0.00 0.00 3.41
4534 4936 1.614413 GTCACCGACTCCTTCTCAGTT 59.386 52.381 0.00 0.00 0.00 3.16
4535 4937 1.613925 TCACCGACTCCTTCTCAGTTG 59.386 52.381 0.00 0.00 0.00 3.16
4536 4938 0.318762 ACCGACTCCTTCTCAGTTGC 59.681 55.000 0.00 0.00 0.00 4.17
4537 4939 0.390472 CCGACTCCTTCTCAGTTGCC 60.390 60.000 0.00 0.00 0.00 4.52
4538 4940 0.605589 CGACTCCTTCTCAGTTGCCT 59.394 55.000 0.00 0.00 0.00 4.75
4539 4941 1.403514 CGACTCCTTCTCAGTTGCCTC 60.404 57.143 0.00 0.00 0.00 4.70
4540 4942 0.980423 ACTCCTTCTCAGTTGCCTCC 59.020 55.000 0.00 0.00 0.00 4.30
4541 4943 0.108424 CTCCTTCTCAGTTGCCTCCG 60.108 60.000 0.00 0.00 0.00 4.63
4542 4944 0.832135 TCCTTCTCAGTTGCCTCCGT 60.832 55.000 0.00 0.00 0.00 4.69
4543 4945 0.390472 CCTTCTCAGTTGCCTCCGTC 60.390 60.000 0.00 0.00 0.00 4.79
4544 4946 0.605589 CTTCTCAGTTGCCTCCGTCT 59.394 55.000 0.00 0.00 0.00 4.18
4545 4947 1.001406 CTTCTCAGTTGCCTCCGTCTT 59.999 52.381 0.00 0.00 0.00 3.01
4546 4948 0.603569 TCTCAGTTGCCTCCGTCTTC 59.396 55.000 0.00 0.00 0.00 2.87
4547 4949 0.605589 CTCAGTTGCCTCCGTCTTCT 59.394 55.000 0.00 0.00 0.00 2.85
4548 4950 0.603569 TCAGTTGCCTCCGTCTTCTC 59.396 55.000 0.00 0.00 0.00 2.87
4549 4951 0.318441 CAGTTGCCTCCGTCTTCTCA 59.682 55.000 0.00 0.00 0.00 3.27
4550 4952 0.605589 AGTTGCCTCCGTCTTCTCAG 59.394 55.000 0.00 0.00 0.00 3.35
4551 4953 0.318762 GTTGCCTCCGTCTTCTCAGT 59.681 55.000 0.00 0.00 0.00 3.41
4552 4954 0.603569 TTGCCTCCGTCTTCTCAGTC 59.396 55.000 0.00 0.00 0.00 3.51
4553 4955 1.137825 GCCTCCGTCTTCTCAGTCG 59.862 63.158 0.00 0.00 0.00 4.18
4554 4956 1.587933 GCCTCCGTCTTCTCAGTCGT 61.588 60.000 0.00 0.00 30.48 4.34
4555 4957 0.448593 CCTCCGTCTTCTCAGTCGTC 59.551 60.000 0.00 0.00 30.48 4.20
4556 4958 1.444836 CTCCGTCTTCTCAGTCGTCT 58.555 55.000 0.00 0.00 30.48 4.18
4557 4959 1.395608 CTCCGTCTTCTCAGTCGTCTC 59.604 57.143 0.00 0.00 30.48 3.36
4558 4960 0.448593 CCGTCTTCTCAGTCGTCTCC 59.551 60.000 0.00 0.00 30.48 3.71
4559 4961 1.444836 CGTCTTCTCAGTCGTCTCCT 58.555 55.000 0.00 0.00 0.00 3.69
4560 4962 1.807742 CGTCTTCTCAGTCGTCTCCTT 59.192 52.381 0.00 0.00 0.00 3.36
4561 4963 2.159626 CGTCTTCTCAGTCGTCTCCTTC 60.160 54.545 0.00 0.00 0.00 3.46
4562 4964 3.078837 GTCTTCTCAGTCGTCTCCTTCT 58.921 50.000 0.00 0.00 0.00 2.85
4563 4965 3.126343 GTCTTCTCAGTCGTCTCCTTCTC 59.874 52.174 0.00 0.00 0.00 2.87
4564 4966 2.116827 TCTCAGTCGTCTCCTTCTCC 57.883 55.000 0.00 0.00 0.00 3.71
4565 4967 0.730265 CTCAGTCGTCTCCTTCTCCG 59.270 60.000 0.00 0.00 0.00 4.63
4566 4968 0.677098 TCAGTCGTCTCCTTCTCCGG 60.677 60.000 0.00 0.00 0.00 5.14
4567 4969 2.047443 AGTCGTCTCCTTCTCCGGC 61.047 63.158 0.00 0.00 0.00 6.13
4568 4970 3.132139 TCGTCTCCTTCTCCGGCG 61.132 66.667 0.00 0.00 0.00 6.46
4569 4971 3.441290 CGTCTCCTTCTCCGGCGT 61.441 66.667 6.01 0.00 0.00 5.68
4570 4972 2.490685 GTCTCCTTCTCCGGCGTC 59.509 66.667 6.01 0.00 0.00 5.19
4571 4973 2.047443 GTCTCCTTCTCCGGCGTCT 61.047 63.158 6.01 0.00 0.00 4.18
4572 4974 1.749638 TCTCCTTCTCCGGCGTCTC 60.750 63.158 6.01 0.00 0.00 3.36
4573 4975 3.114647 CTCCTTCTCCGGCGTCTCG 62.115 68.421 6.01 0.00 0.00 4.04
4574 4976 3.132139 CCTTCTCCGGCGTCTCGA 61.132 66.667 6.01 0.00 0.00 4.04
4575 4977 2.697761 CCTTCTCCGGCGTCTCGAA 61.698 63.158 6.01 1.82 0.00 3.71
4576 4978 1.514443 CTTCTCCGGCGTCTCGAAC 60.514 63.158 6.01 0.00 0.00 3.95
4577 4979 1.924320 CTTCTCCGGCGTCTCGAACT 61.924 60.000 6.01 0.00 0.00 3.01
4578 4980 1.919956 TTCTCCGGCGTCTCGAACTC 61.920 60.000 6.01 0.00 0.00 3.01
4579 4981 3.720106 CTCCGGCGTCTCGAACTCG 62.720 68.421 6.01 0.00 41.45 4.18
4580 4982 4.831307 CCGGCGTCTCGAACTCGG 62.831 72.222 6.01 11.48 40.29 4.63
4582 4984 4.117661 GGCGTCTCGAACTCGGCT 62.118 66.667 17.72 0.00 44.45 5.52
4583 4985 2.126424 GCGTCTCGAACTCGGCTT 60.126 61.111 0.00 0.00 40.29 4.35
4584 4986 1.733399 GCGTCTCGAACTCGGCTTT 60.733 57.895 0.00 0.00 40.29 3.51
4585 4987 1.675524 GCGTCTCGAACTCGGCTTTC 61.676 60.000 0.00 0.00 40.29 2.62
4586 4988 0.386858 CGTCTCGAACTCGGCTTTCA 60.387 55.000 0.00 0.00 40.29 2.69
4587 4989 1.779569 GTCTCGAACTCGGCTTTCAA 58.220 50.000 0.00 0.00 40.29 2.69
4588 4990 1.721926 GTCTCGAACTCGGCTTTCAAG 59.278 52.381 0.00 0.00 40.29 3.02
4602 5004 4.843220 CTTTCAAGCACTTCAACATCCT 57.157 40.909 0.00 0.00 0.00 3.24
4603 5005 5.947228 CTTTCAAGCACTTCAACATCCTA 57.053 39.130 0.00 0.00 0.00 2.94
4604 5006 6.317789 CTTTCAAGCACTTCAACATCCTAA 57.682 37.500 0.00 0.00 0.00 2.69
4605 5007 5.947228 TTCAAGCACTTCAACATCCTAAG 57.053 39.130 0.00 0.00 0.00 2.18
4606 5008 5.227569 TCAAGCACTTCAACATCCTAAGA 57.772 39.130 0.00 0.00 0.00 2.10
4607 5009 5.809001 TCAAGCACTTCAACATCCTAAGAT 58.191 37.500 0.00 0.00 0.00 2.40
4616 5018 2.918712 CATCCTAAGATGGACGGCTT 57.081 50.000 0.00 0.00 45.30 4.35
4617 5019 2.487934 CATCCTAAGATGGACGGCTTG 58.512 52.381 0.00 0.00 45.30 4.01
4618 5020 0.178068 TCCTAAGATGGACGGCTTGC 59.822 55.000 0.00 0.00 0.00 4.01
4619 5021 0.107703 CCTAAGATGGACGGCTTGCA 60.108 55.000 0.00 0.00 0.00 4.08
4620 5022 1.009829 CTAAGATGGACGGCTTGCAC 58.990 55.000 0.00 0.00 0.00 4.57
4621 5023 0.739462 TAAGATGGACGGCTTGCACG 60.739 55.000 0.00 0.00 37.36 5.34
4622 5024 2.434185 GATGGACGGCTTGCACGA 60.434 61.111 1.86 0.00 34.93 4.35
4623 5025 1.815421 GATGGACGGCTTGCACGAT 60.815 57.895 1.86 0.00 34.93 3.73
4624 5026 1.766143 GATGGACGGCTTGCACGATC 61.766 60.000 1.86 0.00 34.93 3.69
4625 5027 2.434185 GGACGGCTTGCACGATCA 60.434 61.111 1.86 0.00 34.93 2.92
4626 5028 1.815421 GGACGGCTTGCACGATCAT 60.815 57.895 1.86 0.00 34.93 2.45
4627 5029 1.638467 GACGGCTTGCACGATCATC 59.362 57.895 1.86 0.00 34.93 2.92
4628 5030 1.766143 GACGGCTTGCACGATCATCC 61.766 60.000 1.86 0.00 34.93 3.51
4629 5031 1.522355 CGGCTTGCACGATCATCCT 60.522 57.895 0.00 0.00 0.00 3.24
4630 5032 1.091771 CGGCTTGCACGATCATCCTT 61.092 55.000 0.00 0.00 0.00 3.36
4631 5033 0.379669 GGCTTGCACGATCATCCTTG 59.620 55.000 0.00 0.00 0.00 3.61
4632 5034 0.248377 GCTTGCACGATCATCCTTGC 60.248 55.000 0.00 0.00 35.45 4.01
4633 5035 1.089112 CTTGCACGATCATCCTTGCA 58.911 50.000 4.72 4.72 43.11 4.08
4634 5036 1.674441 CTTGCACGATCATCCTTGCAT 59.326 47.619 9.00 0.00 44.16 3.96
4635 5037 1.753930 TGCACGATCATCCTTGCATT 58.246 45.000 4.72 0.00 40.01 3.56
4636 5038 1.402613 TGCACGATCATCCTTGCATTG 59.597 47.619 4.72 0.00 40.01 2.82
4637 5039 1.268896 GCACGATCATCCTTGCATTGG 60.269 52.381 1.63 0.00 34.97 3.16
4638 5040 1.027357 ACGATCATCCTTGCATTGGC 58.973 50.000 0.00 0.00 41.68 4.52
4648 5050 2.182496 TGCATTGGCATCCAACTCG 58.818 52.632 0.00 0.00 46.95 4.18
4649 5051 0.608856 TGCATTGGCATCCAACTCGT 60.609 50.000 0.00 0.00 46.95 4.18
4650 5052 0.099436 GCATTGGCATCCAACTCGTC 59.901 55.000 0.00 0.00 46.95 4.20
4651 5053 0.734889 CATTGGCATCCAACTCGTCC 59.265 55.000 0.00 0.00 46.95 4.79
4652 5054 0.327924 ATTGGCATCCAACTCGTCCA 59.672 50.000 0.00 0.00 46.95 4.02
4653 5055 0.327924 TTGGCATCCAACTCGTCCAT 59.672 50.000 0.00 0.00 38.75 3.41
4654 5056 0.107703 TGGCATCCAACTCGTCCATC 60.108 55.000 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 3.151022 GAGGGAGGGAGCTGTCGG 61.151 72.222 0.00 0.00 0.00 4.79
24 25 3.151022 GGAGGGAGGGAGCTGTCG 61.151 72.222 0.00 0.00 0.00 4.35
25 26 2.766229 GGGAGGGAGGGAGCTGTC 60.766 72.222 0.00 0.00 0.00 3.51
26 27 4.423209 GGGGAGGGAGGGAGCTGT 62.423 72.222 0.00 0.00 0.00 4.40
29 30 4.890306 GAGGGGGAGGGAGGGAGC 62.890 77.778 0.00 0.00 0.00 4.70
30 31 4.548513 CGAGGGGGAGGGAGGGAG 62.549 77.778 0.00 0.00 0.00 4.30
51 52 3.136123 CTGATTGGGCTGGCCACG 61.136 66.667 23.90 7.96 37.98 4.94
52 53 1.751927 CTCTGATTGGGCTGGCCAC 60.752 63.158 23.90 13.12 37.98 5.01
53 54 2.679092 CTCTGATTGGGCTGGCCA 59.321 61.111 20.19 20.19 37.98 5.36
54 55 2.123982 CCTCTGATTGGGCTGGCC 60.124 66.667 14.23 14.23 0.00 5.36
55 56 2.832201 GCCTCTGATTGGGCTGGC 60.832 66.667 0.00 0.00 44.48 4.85
56 57 2.123982 GGCCTCTGATTGGGCTGG 60.124 66.667 0.00 0.00 46.80 4.85
57 58 2.515523 CGGCCTCTGATTGGGCTG 60.516 66.667 0.00 3.94 46.80 4.85
58 59 2.688666 TCGGCCTCTGATTGGGCT 60.689 61.111 0.00 0.00 46.80 5.19
59 60 2.514824 GTCGGCCTCTGATTGGGC 60.515 66.667 0.00 0.00 46.89 5.36
60 61 2.202932 CGTCGGCCTCTGATTGGG 60.203 66.667 0.00 0.00 0.00 4.12
61 62 2.892425 GCGTCGGCCTCTGATTGG 60.892 66.667 0.00 0.00 0.00 3.16
62 63 3.257561 CGCGTCGGCCTCTGATTG 61.258 66.667 0.00 0.00 35.02 2.67
63 64 3.760035 ACGCGTCGGCCTCTGATT 61.760 61.111 5.58 0.00 35.02 2.57
64 65 4.498520 CACGCGTCGGCCTCTGAT 62.499 66.667 9.86 0.00 35.02 2.90
95 96 3.429141 CTTGCTGCTGGCCGACTG 61.429 66.667 0.00 0.00 40.92 3.51
121 122 1.524621 CTAATCGGCCCACAGCAGG 60.525 63.158 0.00 0.00 46.50 4.85
122 123 1.524621 CCTAATCGGCCCACAGCAG 60.525 63.158 0.00 0.00 46.50 4.24
123 124 2.252072 GACCTAATCGGCCCACAGCA 62.252 60.000 0.00 0.00 46.50 4.41
124 125 1.523938 GACCTAATCGGCCCACAGC 60.524 63.158 0.00 0.00 42.60 4.40
125 126 1.146263 GGACCTAATCGGCCCACAG 59.854 63.158 0.00 0.00 34.93 3.66
126 127 1.613928 TGGACCTAATCGGCCCACA 60.614 57.895 0.00 0.00 40.88 4.17
127 128 1.146263 CTGGACCTAATCGGCCCAC 59.854 63.158 0.00 0.00 40.88 4.61
128 129 1.306654 ACTGGACCTAATCGGCCCA 60.307 57.895 0.00 0.00 43.93 5.36
129 130 1.446366 GACTGGACCTAATCGGCCC 59.554 63.158 0.00 0.00 35.50 5.80
130 131 1.067582 CGACTGGACCTAATCGGCC 59.932 63.158 0.00 0.00 35.61 6.13
131 132 1.067582 CCGACTGGACCTAATCGGC 59.932 63.158 15.63 0.00 46.75 5.54
133 134 1.067582 GGCCGACTGGACCTAATCG 59.932 63.158 0.00 0.00 37.27 3.34
141 142 3.449227 CGCTGTAGGCCGACTGGA 61.449 66.667 21.31 0.01 37.49 3.86
142 143 4.514577 CCGCTGTAGGCCGACTGG 62.515 72.222 21.31 14.47 37.74 4.00
143 144 4.514577 CCCGCTGTAGGCCGACTG 62.515 72.222 17.46 17.16 37.74 3.51
156 157 2.704342 ATAATACACCGTCGGCCCGC 62.704 60.000 12.28 0.00 0.00 6.13
157 158 0.249573 AATAATACACCGTCGGCCCG 60.250 55.000 12.28 0.00 0.00 6.13
158 159 1.957668 AAATAATACACCGTCGGCCC 58.042 50.000 12.28 0.00 0.00 5.80
159 160 3.374678 TCAAAAATAATACACCGTCGGCC 59.625 43.478 12.28 0.00 0.00 6.13
160 161 4.603231 TCAAAAATAATACACCGTCGGC 57.397 40.909 12.28 0.00 0.00 5.54
161 162 8.455598 AATTTTCAAAAATAATACACCGTCGG 57.544 30.769 10.48 10.48 37.62 4.79
242 243 6.714810 TGGATGTCTATATTGGCGCTATTTTT 59.285 34.615 7.64 0.00 0.00 1.94
243 244 6.237901 TGGATGTCTATATTGGCGCTATTTT 58.762 36.000 7.64 0.00 0.00 1.82
244 245 5.804639 TGGATGTCTATATTGGCGCTATTT 58.195 37.500 7.64 0.00 0.00 1.40
245 246 5.420725 TGGATGTCTATATTGGCGCTATT 57.579 39.130 7.64 0.00 0.00 1.73
246 247 5.453903 GGATGGATGTCTATATTGGCGCTAT 60.454 44.000 7.64 3.88 0.00 2.97
247 248 4.141937 GGATGGATGTCTATATTGGCGCTA 60.142 45.833 7.64 0.00 0.00 4.26
248 249 3.369892 GGATGGATGTCTATATTGGCGCT 60.370 47.826 7.64 0.00 0.00 5.92
249 250 2.939103 GGATGGATGTCTATATTGGCGC 59.061 50.000 0.00 0.00 0.00 6.53
250 251 4.206477 TGGATGGATGTCTATATTGGCG 57.794 45.455 0.00 0.00 0.00 5.69
251 252 5.769662 TGTTTGGATGGATGTCTATATTGGC 59.230 40.000 0.00 0.00 0.00 4.52
252 253 7.666804 TGATGTTTGGATGGATGTCTATATTGG 59.333 37.037 0.00 0.00 0.00 3.16
253 254 8.625786 TGATGTTTGGATGGATGTCTATATTG 57.374 34.615 0.00 0.00 0.00 1.90
254 255 9.071276 GTTGATGTTTGGATGGATGTCTATATT 57.929 33.333 0.00 0.00 0.00 1.28
255 256 8.443176 AGTTGATGTTTGGATGGATGTCTATAT 58.557 33.333 0.00 0.00 0.00 0.86
256 257 7.805163 AGTTGATGTTTGGATGGATGTCTATA 58.195 34.615 0.00 0.00 0.00 1.31
257 258 6.666678 AGTTGATGTTTGGATGGATGTCTAT 58.333 36.000 0.00 0.00 0.00 1.98
258 259 6.065976 AGTTGATGTTTGGATGGATGTCTA 57.934 37.500 0.00 0.00 0.00 2.59
259 260 4.927049 AGTTGATGTTTGGATGGATGTCT 58.073 39.130 0.00 0.00 0.00 3.41
260 261 6.757897 TTAGTTGATGTTTGGATGGATGTC 57.242 37.500 0.00 0.00 0.00 3.06
261 262 7.537596 TTTTAGTTGATGTTTGGATGGATGT 57.462 32.000 0.00 0.00 0.00 3.06
296 297 9.733556 TGGAGTGCTACTTCTATTTGATTTTTA 57.266 29.630 0.00 0.00 0.00 1.52
297 298 8.635765 TGGAGTGCTACTTCTATTTGATTTTT 57.364 30.769 0.00 0.00 0.00 1.94
298 299 8.635765 TTGGAGTGCTACTTCTATTTGATTTT 57.364 30.769 0.00 0.00 0.00 1.82
299 300 7.885399 ACTTGGAGTGCTACTTCTATTTGATTT 59.115 33.333 0.00 0.00 0.00 2.17
300 301 7.398024 ACTTGGAGTGCTACTTCTATTTGATT 58.602 34.615 0.00 0.00 0.00 2.57
301 302 6.951971 ACTTGGAGTGCTACTTCTATTTGAT 58.048 36.000 0.00 0.00 0.00 2.57
302 303 6.360370 ACTTGGAGTGCTACTTCTATTTGA 57.640 37.500 0.00 0.00 0.00 2.69
303 304 8.547967 TTAACTTGGAGTGCTACTTCTATTTG 57.452 34.615 0.00 0.00 0.00 2.32
304 305 9.569122 TTTTAACTTGGAGTGCTACTTCTATTT 57.431 29.630 0.00 0.00 0.00 1.40
305 306 9.569122 TTTTTAACTTGGAGTGCTACTTCTATT 57.431 29.630 0.00 0.00 0.00 1.73
306 307 9.220767 CTTTTTAACTTGGAGTGCTACTTCTAT 57.779 33.333 0.00 0.00 0.00 1.98
307 308 7.660208 CCTTTTTAACTTGGAGTGCTACTTCTA 59.340 37.037 0.00 0.00 0.00 2.10
308 309 6.486993 CCTTTTTAACTTGGAGTGCTACTTCT 59.513 38.462 0.00 0.00 0.00 2.85
309 310 6.485648 TCCTTTTTAACTTGGAGTGCTACTTC 59.514 38.462 0.00 0.00 0.00 3.01
310 311 6.362248 TCCTTTTTAACTTGGAGTGCTACTT 58.638 36.000 0.00 0.00 0.00 2.24
311 312 5.937111 TCCTTTTTAACTTGGAGTGCTACT 58.063 37.500 0.00 0.00 0.00 2.57
312 313 6.436261 GTTCCTTTTTAACTTGGAGTGCTAC 58.564 40.000 0.00 0.00 0.00 3.58
313 314 5.237779 CGTTCCTTTTTAACTTGGAGTGCTA 59.762 40.000 0.00 0.00 0.00 3.49
314 315 4.036380 CGTTCCTTTTTAACTTGGAGTGCT 59.964 41.667 0.00 0.00 0.00 4.40
315 316 4.287720 CGTTCCTTTTTAACTTGGAGTGC 58.712 43.478 0.00 0.00 0.00 4.40
316 317 4.577283 TCCGTTCCTTTTTAACTTGGAGTG 59.423 41.667 0.00 0.00 0.00 3.51
317 318 4.784177 TCCGTTCCTTTTTAACTTGGAGT 58.216 39.130 0.00 0.00 0.00 3.85
318 319 5.761165 TTCCGTTCCTTTTTAACTTGGAG 57.239 39.130 0.00 0.00 0.00 3.86
319 320 7.522562 GCTTATTCCGTTCCTTTTTAACTTGGA 60.523 37.037 0.00 0.00 0.00 3.53
320 321 6.584942 GCTTATTCCGTTCCTTTTTAACTTGG 59.415 38.462 0.00 0.00 0.00 3.61
321 322 6.304683 CGCTTATTCCGTTCCTTTTTAACTTG 59.695 38.462 0.00 0.00 0.00 3.16
322 323 6.376177 CGCTTATTCCGTTCCTTTTTAACTT 58.624 36.000 0.00 0.00 0.00 2.66
323 324 5.618418 GCGCTTATTCCGTTCCTTTTTAACT 60.618 40.000 0.00 0.00 0.00 2.24
324 325 4.556135 GCGCTTATTCCGTTCCTTTTTAAC 59.444 41.667 0.00 0.00 0.00 2.01
325 326 4.215827 TGCGCTTATTCCGTTCCTTTTTAA 59.784 37.500 9.73 0.00 0.00 1.52
326 327 3.752222 TGCGCTTATTCCGTTCCTTTTTA 59.248 39.130 9.73 0.00 0.00 1.52
327 328 2.554893 TGCGCTTATTCCGTTCCTTTTT 59.445 40.909 9.73 0.00 0.00 1.94
328 329 2.156098 TGCGCTTATTCCGTTCCTTTT 58.844 42.857 9.73 0.00 0.00 2.27
329 330 1.816074 TGCGCTTATTCCGTTCCTTT 58.184 45.000 9.73 0.00 0.00 3.11
330 331 1.737793 CTTGCGCTTATTCCGTTCCTT 59.262 47.619 9.73 0.00 0.00 3.36
331 332 1.066430 TCTTGCGCTTATTCCGTTCCT 60.066 47.619 9.73 0.00 0.00 3.36
332 333 1.365699 TCTTGCGCTTATTCCGTTCC 58.634 50.000 9.73 0.00 0.00 3.62
333 334 2.851008 GCATCTTGCGCTTATTCCGTTC 60.851 50.000 9.73 0.00 31.71 3.95
334 335 1.064060 GCATCTTGCGCTTATTCCGTT 59.936 47.619 9.73 0.00 31.71 4.44
335 336 0.657840 GCATCTTGCGCTTATTCCGT 59.342 50.000 9.73 0.00 31.71 4.69
336 337 3.444657 GCATCTTGCGCTTATTCCG 57.555 52.632 9.73 0.00 31.71 4.30
346 347 5.756195 TCCATAGTACATTTGCATCTTGC 57.244 39.130 0.00 0.00 45.29 4.01
347 348 6.974622 GGTTTCCATAGTACATTTGCATCTTG 59.025 38.462 0.00 0.00 0.00 3.02
348 349 6.096846 GGGTTTCCATAGTACATTTGCATCTT 59.903 38.462 0.00 0.00 0.00 2.40
349 350 5.594317 GGGTTTCCATAGTACATTTGCATCT 59.406 40.000 0.00 0.00 0.00 2.90
350 351 5.594317 AGGGTTTCCATAGTACATTTGCATC 59.406 40.000 0.00 0.00 34.83 3.91
351 352 5.518865 AGGGTTTCCATAGTACATTTGCAT 58.481 37.500 0.00 0.00 34.83 3.96
352 353 4.929479 AGGGTTTCCATAGTACATTTGCA 58.071 39.130 0.00 0.00 34.83 4.08
353 354 6.354130 TCTAGGGTTTCCATAGTACATTTGC 58.646 40.000 7.24 0.00 34.83 3.68
354 355 8.801882 TTTCTAGGGTTTCCATAGTACATTTG 57.198 34.615 7.24 0.00 34.83 2.32
355 356 9.816787 TTTTTCTAGGGTTTCCATAGTACATTT 57.183 29.630 7.24 0.00 34.83 2.32
356 357 9.990868 ATTTTTCTAGGGTTTCCATAGTACATT 57.009 29.630 7.24 0.00 34.83 2.71
357 358 9.408648 CATTTTTCTAGGGTTTCCATAGTACAT 57.591 33.333 7.24 0.00 34.83 2.29
358 359 7.338449 GCATTTTTCTAGGGTTTCCATAGTACA 59.662 37.037 7.24 0.00 34.83 2.90
359 360 7.338449 TGCATTTTTCTAGGGTTTCCATAGTAC 59.662 37.037 7.24 0.00 34.83 2.73
360 361 7.406916 TGCATTTTTCTAGGGTTTCCATAGTA 58.593 34.615 7.24 0.00 34.83 1.82
361 362 6.252995 TGCATTTTTCTAGGGTTTCCATAGT 58.747 36.000 7.24 0.00 34.83 2.12
362 363 6.773976 TGCATTTTTCTAGGGTTTCCATAG 57.226 37.500 1.64 1.64 34.83 2.23
363 364 7.015682 TGTTTGCATTTTTCTAGGGTTTCCATA 59.984 33.333 0.00 0.00 34.83 2.74
364 365 6.183361 TGTTTGCATTTTTCTAGGGTTTCCAT 60.183 34.615 0.00 0.00 34.83 3.41
365 366 5.129485 TGTTTGCATTTTTCTAGGGTTTCCA 59.871 36.000 0.00 0.00 34.83 3.53
366 367 5.606505 TGTTTGCATTTTTCTAGGGTTTCC 58.393 37.500 0.00 0.00 0.00 3.13
367 368 9.087424 GATATGTTTGCATTTTTCTAGGGTTTC 57.913 33.333 0.00 0.00 36.58 2.78
368 369 7.759433 CGATATGTTTGCATTTTTCTAGGGTTT 59.241 33.333 0.00 0.00 36.58 3.27
369 370 7.122055 TCGATATGTTTGCATTTTTCTAGGGTT 59.878 33.333 0.00 0.00 36.58 4.11
370 371 6.601613 TCGATATGTTTGCATTTTTCTAGGGT 59.398 34.615 0.00 0.00 36.58 4.34
371 372 7.026631 TCGATATGTTTGCATTTTTCTAGGG 57.973 36.000 0.00 0.00 36.58 3.53
372 373 9.173939 GAATCGATATGTTTGCATTTTTCTAGG 57.826 33.333 0.00 0.00 36.58 3.02
373 374 9.720667 TGAATCGATATGTTTGCATTTTTCTAG 57.279 29.630 0.00 0.00 36.58 2.43
374 375 9.502145 GTGAATCGATATGTTTGCATTTTTCTA 57.498 29.630 0.00 0.00 36.58 2.10
375 376 7.218773 CGTGAATCGATATGTTTGCATTTTTCT 59.781 33.333 0.00 0.00 42.86 2.52
376 377 7.322260 CGTGAATCGATATGTTTGCATTTTTC 58.678 34.615 0.00 0.00 42.86 2.29
377 378 6.253298 CCGTGAATCGATATGTTTGCATTTTT 59.747 34.615 0.00 0.00 42.86 1.94
378 379 5.743398 CCGTGAATCGATATGTTTGCATTTT 59.257 36.000 0.00 0.00 42.86 1.82
379 380 5.273170 CCGTGAATCGATATGTTTGCATTT 58.727 37.500 0.00 0.00 42.86 2.32
380 381 4.261155 CCCGTGAATCGATATGTTTGCATT 60.261 41.667 0.00 0.00 42.86 3.56
381 382 3.250762 CCCGTGAATCGATATGTTTGCAT 59.749 43.478 0.00 0.00 42.86 3.96
382 383 2.611751 CCCGTGAATCGATATGTTTGCA 59.388 45.455 0.00 0.00 42.86 4.08
383 384 2.869801 TCCCGTGAATCGATATGTTTGC 59.130 45.455 0.00 0.00 42.86 3.68
453 454 2.224305 CGGGAATGTTCTAGGGTGATCC 60.224 54.545 0.00 0.00 0.00 3.36
508 509 4.754667 TCTGCTCTGCTGCTGCCG 62.755 66.667 13.47 6.90 38.71 5.69
509 510 2.799814 TTCTCTGCTCTGCTGCTGCC 62.800 60.000 13.47 0.00 38.71 4.85
698 711 4.451150 TGTGTGCCGATCTCCGCC 62.451 66.667 0.00 0.00 36.84 6.13
930 945 0.549950 CTCTACTACCTCGGTGGGGA 59.450 60.000 4.44 1.77 41.11 4.81
999 1027 1.894756 CTCCTCCTCCTCCGCTACG 60.895 68.421 0.00 0.00 0.00 3.51
1000 1028 1.529713 CCTCCTCCTCCTCCGCTAC 60.530 68.421 0.00 0.00 0.00 3.58
1001 1029 1.696674 TCCTCCTCCTCCTCCGCTA 60.697 63.158 0.00 0.00 0.00 4.26
1002 1030 3.024356 TCCTCCTCCTCCTCCGCT 61.024 66.667 0.00 0.00 0.00 5.52
1003 1031 2.366153 ATCTCCTCCTCCTCCTCCGC 62.366 65.000 0.00 0.00 0.00 5.54
1004 1032 0.539438 CATCTCCTCCTCCTCCTCCG 60.539 65.000 0.00 0.00 0.00 4.63
1005 1033 0.178935 CCATCTCCTCCTCCTCCTCC 60.179 65.000 0.00 0.00 0.00 4.30
1172 1200 1.381327 CTAGAAGCAGGGGACGGGA 60.381 63.158 0.00 0.00 0.00 5.14
1189 1217 0.890683 CCAGCAATTCGAAAAGGGCT 59.109 50.000 0.00 6.17 0.00 5.19
1190 1218 0.108662 CCCAGCAATTCGAAAAGGGC 60.109 55.000 0.00 3.72 0.00 5.19
1405 1437 0.953960 ACACAGCCCGAAATCGTTCC 60.954 55.000 1.79 0.00 37.74 3.62
1428 1460 2.034053 GCCCAAATCTGTGAACGAAACA 59.966 45.455 0.00 0.00 0.00 2.83
1458 1490 6.140110 GCATGAAACTCGAGAGATCTACTAC 58.860 44.000 21.68 0.00 40.84 2.73
1494 1526 1.518572 CCCGGAGACCAACGATTCG 60.519 63.158 0.73 4.14 0.00 3.34
1559 1592 5.872070 TCACCAACCAAACAGAAATTCAAAC 59.128 36.000 0.00 0.00 0.00 2.93
1587 1620 2.115911 ACCAAAACTCGGCGCACAA 61.116 52.632 10.83 0.00 0.00 3.33
1595 1628 1.021202 TCCAACAGCACCAAAACTCG 58.979 50.000 0.00 0.00 0.00 4.18
1632 1665 0.304705 CAGTCGAGCACACAAACCAC 59.695 55.000 0.00 0.00 0.00 4.16
1731 1771 7.820648 ACACATCAGTAATCAGTTCAAATTCC 58.179 34.615 0.00 0.00 0.00 3.01
1783 1823 9.914131 AAGATCTAAGGAACAAAGCAAATTAAC 57.086 29.630 0.00 0.00 0.00 2.01
1841 1881 5.006746 GTGTAATTCAGTAAATCAGGGCGAG 59.993 44.000 0.00 0.00 0.00 5.03
2005 2045 1.225376 CGGGTGTTGCAGAAGCGTTA 61.225 55.000 0.00 0.00 46.23 3.18
2077 2121 6.054941 TCAGCATGTTTCTGTTCTGTAAGAA 58.945 36.000 0.00 0.00 44.89 2.52
2137 2181 6.498304 AGCAATGCATAACAGCTAATACAAC 58.502 36.000 8.35 0.00 33.06 3.32
2138 2182 6.698008 AGCAATGCATAACAGCTAATACAA 57.302 33.333 8.35 0.00 33.06 2.41
2141 2185 9.208022 CTTACTAGCAATGCATAACAGCTAATA 57.792 33.333 8.35 12.70 37.35 0.98
2226 2270 4.713792 AGCAAATCAGGGGGATACTAAG 57.286 45.455 0.00 0.00 34.28 2.18
2249 2293 4.037208 ACCAGCAGCTAATATCAAATGTGC 59.963 41.667 0.00 0.00 0.00 4.57
2535 2583 2.632996 TGAAGCACTACACCTAAGCTGT 59.367 45.455 0.00 0.00 35.42 4.40
2566 2614 5.876357 TGGAAGCAGTTGGTCTACTTTTAT 58.124 37.500 0.00 0.00 30.65 1.40
2610 2695 7.176865 AGTGCAGTGACAGTATTTCTCTAGTTA 59.823 37.037 0.00 0.00 0.00 2.24
2611 2696 6.015010 AGTGCAGTGACAGTATTTCTCTAGTT 60.015 38.462 0.00 0.00 0.00 2.24
2616 2701 4.560128 TGAGTGCAGTGACAGTATTTCTC 58.440 43.478 0.00 0.00 0.00 2.87
2645 2731 4.942761 ACAGTTTTTCAGAGTACCGGTA 57.057 40.909 11.16 11.16 0.00 4.02
2657 2743 5.989249 ACCGTACCGAATTTACAGTTTTTC 58.011 37.500 0.00 0.00 0.00 2.29
2682 2835 6.421405 AGCGAAATGTTCTTTTCAATTTTGC 58.579 32.000 10.00 10.00 38.18 3.68
2688 2841 9.773328 CTATATTGAGCGAAATGTTCTTTTCAA 57.227 29.630 10.28 0.00 35.73 2.69
2690 2843 9.427127 GTCTATATTGAGCGAAATGTTCTTTTC 57.573 33.333 0.00 2.44 33.24 2.29
2691 2844 9.167311 AGTCTATATTGAGCGAAATGTTCTTTT 57.833 29.630 0.00 0.00 0.00 2.27
2692 2845 8.723942 AGTCTATATTGAGCGAAATGTTCTTT 57.276 30.769 0.00 0.00 0.00 2.52
2696 2849 7.225538 CAGGAAGTCTATATTGAGCGAAATGTT 59.774 37.037 0.00 0.00 0.00 2.71
2708 2861 6.132658 TGAGCTCTGTCAGGAAGTCTATATT 58.867 40.000 16.19 0.00 0.00 1.28
2733 2886 6.265196 TGCCTGTAGTTTGACAAAAATCAGAT 59.735 34.615 19.72 0.00 0.00 2.90
2743 2896 4.085357 ACTGATTGCCTGTAGTTTGACA 57.915 40.909 0.00 0.00 0.00 3.58
2744 2897 4.392138 GGTACTGATTGCCTGTAGTTTGAC 59.608 45.833 0.00 0.00 31.17 3.18
2745 2898 4.041075 TGGTACTGATTGCCTGTAGTTTGA 59.959 41.667 0.00 0.00 31.17 2.69
2746 2899 4.323417 TGGTACTGATTGCCTGTAGTTTG 58.677 43.478 0.00 0.00 31.17 2.93
2803 2958 1.073923 GAGGTTGGCTTCTTGGGAGAA 59.926 52.381 0.00 0.00 39.54 2.87
2848 3003 3.382111 AGCGTGCCACTTAGCTCT 58.618 55.556 0.00 0.00 34.48 4.09
2917 3072 4.087892 TGGCCGCTCAGCTCCTTC 62.088 66.667 0.00 0.00 0.00 3.46
3097 3254 2.549754 CCGAAGGCGATTGAAAGCATAT 59.450 45.455 0.00 0.00 46.14 1.78
3098 3255 1.939934 CCGAAGGCGATTGAAAGCATA 59.060 47.619 0.00 0.00 46.14 3.14
3099 3256 0.734889 CCGAAGGCGATTGAAAGCAT 59.265 50.000 0.00 0.00 46.14 3.79
3100 3257 2.170738 CCGAAGGCGATTGAAAGCA 58.829 52.632 0.00 0.00 46.14 3.91
3113 3270 3.123620 GCTGCTCACCTGCCGAAG 61.124 66.667 0.00 0.00 32.77 3.79
3565 3738 1.070134 GGGGAAAACCAAACCAGAAGC 59.930 52.381 0.00 0.00 42.91 3.86
3645 3822 1.167851 CAGCCACTAACCACACCATG 58.832 55.000 0.00 0.00 0.00 3.66
3701 3878 2.640989 CGACCTGACGACGAACCA 59.359 61.111 0.00 0.00 35.09 3.67
3815 3997 2.806945 AAGAATCCAAGATCCCGCAA 57.193 45.000 0.00 0.00 0.00 4.85
3897 4083 2.195411 TGGCACTGCTGCAAGGAA 59.805 55.556 3.02 0.00 46.28 3.36
3924 4110 3.673594 CGCTCAGAAAGTCGTAGTTGGAT 60.674 47.826 0.00 0.00 0.00 3.41
4044 4438 0.179240 CAAAGAGCGCGCAACAGTAG 60.179 55.000 35.10 12.62 0.00 2.57
4252 4648 6.257994 AGGGAGCTATTCATCATGAGAAAA 57.742 37.500 0.09 0.00 0.00 2.29
4275 4674 2.594536 AGATTCTTGGAGATGGGGGA 57.405 50.000 0.00 0.00 0.00 4.81
4276 4675 2.158549 GGAAGATTCTTGGAGATGGGGG 60.159 54.545 3.03 0.00 0.00 5.40
4277 4676 2.511218 TGGAAGATTCTTGGAGATGGGG 59.489 50.000 3.03 0.00 0.00 4.96
4278 4677 3.054139 TGTGGAAGATTCTTGGAGATGGG 60.054 47.826 3.03 0.00 0.00 4.00
4280 4679 3.944015 GGTGTGGAAGATTCTTGGAGATG 59.056 47.826 3.03 0.00 0.00 2.90
4281 4680 3.054065 GGGTGTGGAAGATTCTTGGAGAT 60.054 47.826 3.03 0.00 0.00 2.75
4282 4681 2.305927 GGGTGTGGAAGATTCTTGGAGA 59.694 50.000 3.03 0.00 0.00 3.71
4283 4682 2.716217 GGGTGTGGAAGATTCTTGGAG 58.284 52.381 3.03 0.00 0.00 3.86
4285 4684 1.453155 CGGGTGTGGAAGATTCTTGG 58.547 55.000 3.03 0.00 0.00 3.61
4286 4685 1.003118 TCCGGGTGTGGAAGATTCTTG 59.997 52.381 3.03 0.00 34.30 3.02
4288 4687 1.358152 TTCCGGGTGTGGAAGATTCT 58.642 50.000 0.00 0.00 43.01 2.40
4289 4688 3.948735 TTCCGGGTGTGGAAGATTC 57.051 52.632 0.00 0.00 43.01 2.52
4297 4696 2.963101 TCTCCATACTATTCCGGGTGTG 59.037 50.000 0.00 0.00 0.00 3.82
4298 4697 3.323774 TCTCCATACTATTCCGGGTGT 57.676 47.619 0.00 0.00 0.00 4.16
4308 4707 4.082190 GCTTCCGCATACATCTCCATACTA 60.082 45.833 0.00 0.00 35.78 1.82
4309 4708 3.306364 GCTTCCGCATACATCTCCATACT 60.306 47.826 0.00 0.00 35.78 2.12
4310 4709 2.996621 GCTTCCGCATACATCTCCATAC 59.003 50.000 0.00 0.00 35.78 2.39
4311 4710 2.028112 GGCTTCCGCATACATCTCCATA 60.028 50.000 0.00 0.00 38.10 2.74
4312 4711 1.271054 GGCTTCCGCATACATCTCCAT 60.271 52.381 0.00 0.00 38.10 3.41
4313 4712 0.106708 GGCTTCCGCATACATCTCCA 59.893 55.000 0.00 0.00 38.10 3.86
4314 4713 0.946221 CGGCTTCCGCATACATCTCC 60.946 60.000 0.00 0.00 41.17 3.71
4315 4714 2.522060 CGGCTTCCGCATACATCTC 58.478 57.895 0.00 0.00 41.17 2.75
4316 4715 4.758692 CGGCTTCCGCATACATCT 57.241 55.556 0.00 0.00 41.17 2.90
4326 4725 1.997928 GCCAGATTTGAGCGGCTTCC 61.998 60.000 2.97 0.00 41.50 3.46
4327 4726 1.431036 GCCAGATTTGAGCGGCTTC 59.569 57.895 2.97 0.00 41.50 3.86
4330 4729 1.669999 ATTGGCCAGATTTGAGCGGC 61.670 55.000 5.11 0.00 44.10 6.53
4331 4730 0.819582 AATTGGCCAGATTTGAGCGG 59.180 50.000 5.11 0.00 0.00 5.52
4333 4732 3.598019 TCAAATTGGCCAGATTTGAGC 57.402 42.857 31.03 0.00 44.30 4.26
4335 4734 8.915057 TTAAAATTCAAATTGGCCAGATTTGA 57.085 26.923 31.03 31.03 46.26 2.69
4338 4737 8.245491 GCATTTAAAATTCAAATTGGCCAGATT 58.755 29.630 5.11 6.43 0.00 2.40
4340 4739 6.713903 TGCATTTAAAATTCAAATTGGCCAGA 59.286 30.769 5.11 0.00 0.00 3.86
4341 4740 6.910995 TGCATTTAAAATTCAAATTGGCCAG 58.089 32.000 5.11 0.00 0.00 4.85
4358 4759 9.734620 CTTTAACTTGCTATTGCTATGCATTTA 57.265 29.630 3.54 0.00 38.76 1.40
4360 4761 7.703621 CACTTTAACTTGCTATTGCTATGCATT 59.296 33.333 3.54 0.00 38.76 3.56
4387 4788 6.352682 TCGGGTGTTATGTGAATAAAATCG 57.647 37.500 0.00 0.00 0.00 3.34
4389 4790 7.773224 TCTGATCGGGTGTTATGTGAATAAAAT 59.227 33.333 0.62 0.00 0.00 1.82
4391 4792 6.645306 TCTGATCGGGTGTTATGTGAATAAA 58.355 36.000 0.62 0.00 0.00 1.40
4392 4793 6.228616 TCTGATCGGGTGTTATGTGAATAA 57.771 37.500 0.62 0.00 0.00 1.40
4393 4794 5.862678 TCTGATCGGGTGTTATGTGAATA 57.137 39.130 0.62 0.00 0.00 1.75
4394 4795 4.753516 TCTGATCGGGTGTTATGTGAAT 57.246 40.909 0.62 0.00 0.00 2.57
4401 4802 3.773418 TTTGGTTCTGATCGGGTGTTA 57.227 42.857 0.62 0.00 0.00 2.41
4405 4806 2.938838 TGTTTTTGGTTCTGATCGGGT 58.061 42.857 0.62 0.00 0.00 5.28
4414 4815 3.453424 ACATCGCCTTTGTTTTTGGTTC 58.547 40.909 0.00 0.00 0.00 3.62
4416 4817 3.118956 TGAACATCGCCTTTGTTTTTGGT 60.119 39.130 0.00 0.00 37.43 3.67
4417 4818 3.452474 TGAACATCGCCTTTGTTTTTGG 58.548 40.909 0.00 0.00 37.43 3.28
4418 4819 5.164061 GCTATGAACATCGCCTTTGTTTTTG 60.164 40.000 0.76 0.00 37.43 2.44
4419 4820 4.923281 GCTATGAACATCGCCTTTGTTTTT 59.077 37.500 0.76 0.00 37.43 1.94
4423 4824 2.991250 AGCTATGAACATCGCCTTTGT 58.009 42.857 7.50 0.00 30.67 2.83
4424 4825 4.361451 AAAGCTATGAACATCGCCTTTG 57.639 40.909 7.50 0.00 30.67 2.77
4429 4830 4.672413 GCATGTAAAAGCTATGAACATCGC 59.328 41.667 3.63 3.63 0.00 4.58
4430 4831 5.207768 GGCATGTAAAAGCTATGAACATCG 58.792 41.667 0.00 0.00 0.00 3.84
4431 4832 5.523369 GGGCATGTAAAAGCTATGAACATC 58.477 41.667 0.00 0.00 0.00 3.06
4442 4844 2.276201 TCGTGATCGGGCATGTAAAAG 58.724 47.619 0.00 0.00 37.69 2.27
4463 4865 9.411801 TGCACGAATAGTCAGATTAAGATATTC 57.588 33.333 0.00 0.00 0.00 1.75
4465 4867 9.764363 TTTGCACGAATAGTCAGATTAAGATAT 57.236 29.630 0.00 0.00 0.00 1.63
4475 4877 4.260132 GCTCAGATTTGCACGAATAGTCAG 60.260 45.833 0.00 0.00 0.00 3.51
4478 4880 2.939103 GGCTCAGATTTGCACGAATAGT 59.061 45.455 0.00 0.00 0.00 2.12
4479 4881 3.201290 AGGCTCAGATTTGCACGAATAG 58.799 45.455 0.00 0.00 0.00 1.73
4480 4882 3.198068 GAGGCTCAGATTTGCACGAATA 58.802 45.455 10.25 0.00 0.00 1.75
4481 4883 2.012673 GAGGCTCAGATTTGCACGAAT 58.987 47.619 10.25 0.00 0.00 3.34
4482 4884 1.442769 GAGGCTCAGATTTGCACGAA 58.557 50.000 10.25 0.00 0.00 3.85
4483 4885 0.391661 GGAGGCTCAGATTTGCACGA 60.392 55.000 17.69 0.00 0.00 4.35
4484 4886 0.674581 TGGAGGCTCAGATTTGCACG 60.675 55.000 17.69 0.00 0.00 5.34
4485 4887 0.807496 GTGGAGGCTCAGATTTGCAC 59.193 55.000 17.69 9.29 0.00 4.57
4486 4888 0.674581 CGTGGAGGCTCAGATTTGCA 60.675 55.000 17.69 0.00 0.00 4.08
4487 4889 1.986575 GCGTGGAGGCTCAGATTTGC 61.987 60.000 17.69 7.20 0.00 3.68
4488 4890 0.392193 AGCGTGGAGGCTCAGATTTG 60.392 55.000 17.69 0.61 39.61 2.32
4489 4891 1.986413 AGCGTGGAGGCTCAGATTT 59.014 52.632 17.69 0.00 39.61 2.17
4490 4892 3.719121 AGCGTGGAGGCTCAGATT 58.281 55.556 17.69 0.00 39.61 2.40
4497 4899 2.125753 CAGAGTGAGCGTGGAGGC 60.126 66.667 0.00 0.00 0.00 4.70
4498 4900 1.214062 GACAGAGTGAGCGTGGAGG 59.786 63.158 0.00 0.00 0.00 4.30
4499 4901 0.387878 GTGACAGAGTGAGCGTGGAG 60.388 60.000 0.00 0.00 0.00 3.86
4500 4902 1.660355 GTGACAGAGTGAGCGTGGA 59.340 57.895 0.00 0.00 0.00 4.02
4501 4903 1.373497 GGTGACAGAGTGAGCGTGG 60.373 63.158 0.00 0.00 0.00 4.94
4502 4904 1.730902 CGGTGACAGAGTGAGCGTG 60.731 63.158 0.28 0.00 36.11 5.34
4503 4905 1.897137 TCGGTGACAGAGTGAGCGT 60.897 57.895 7.92 0.00 40.92 5.07
4504 4906 1.442857 GTCGGTGACAGAGTGAGCG 60.443 63.158 1.96 1.96 41.40 5.03
4505 4907 0.109504 GAGTCGGTGACAGAGTGAGC 60.110 60.000 0.00 0.00 34.60 4.26
4506 4908 0.523966 GGAGTCGGTGACAGAGTGAG 59.476 60.000 0.00 0.00 34.60 3.51
4507 4909 0.110678 AGGAGTCGGTGACAGAGTGA 59.889 55.000 0.00 0.00 34.60 3.41
4508 4910 0.962489 AAGGAGTCGGTGACAGAGTG 59.038 55.000 0.00 0.00 34.60 3.51
4509 4911 1.202952 AGAAGGAGTCGGTGACAGAGT 60.203 52.381 0.00 0.00 34.60 3.24
4510 4912 1.470890 GAGAAGGAGTCGGTGACAGAG 59.529 57.143 0.00 0.00 34.60 3.35
4511 4913 1.202891 TGAGAAGGAGTCGGTGACAGA 60.203 52.381 0.00 0.00 34.60 3.41
4512 4914 1.201181 CTGAGAAGGAGTCGGTGACAG 59.799 57.143 0.00 0.00 34.60 3.51
4513 4915 1.248486 CTGAGAAGGAGTCGGTGACA 58.752 55.000 0.00 0.00 34.60 3.58
4514 4916 1.249407 ACTGAGAAGGAGTCGGTGAC 58.751 55.000 0.00 0.00 32.05 3.67
4515 4917 1.613925 CAACTGAGAAGGAGTCGGTGA 59.386 52.381 0.00 0.00 33.64 4.02
4516 4918 1.937108 GCAACTGAGAAGGAGTCGGTG 60.937 57.143 0.00 0.00 33.64 4.94
4517 4919 0.318762 GCAACTGAGAAGGAGTCGGT 59.681 55.000 0.00 0.00 34.88 4.69
4518 4920 0.390472 GGCAACTGAGAAGGAGTCGG 60.390 60.000 0.00 0.00 0.00 4.79
4519 4921 3.129792 GGCAACTGAGAAGGAGTCG 57.870 57.895 0.00 0.00 0.00 4.18
4532 4934 0.318762 ACTGAGAAGACGGAGGCAAC 59.681 55.000 0.00 0.00 0.00 4.17
4533 4935 0.603569 GACTGAGAAGACGGAGGCAA 59.396 55.000 0.00 0.00 0.00 4.52
4534 4936 1.587043 CGACTGAGAAGACGGAGGCA 61.587 60.000 0.00 0.00 0.00 4.75
4535 4937 1.137825 CGACTGAGAAGACGGAGGC 59.862 63.158 0.00 0.00 0.00 4.70
4536 4938 0.448593 GACGACTGAGAAGACGGAGG 59.551 60.000 0.00 0.00 0.00 4.30
4537 4939 1.395608 GAGACGACTGAGAAGACGGAG 59.604 57.143 0.00 0.00 0.00 4.63
4538 4940 1.440708 GAGACGACTGAGAAGACGGA 58.559 55.000 0.00 0.00 0.00 4.69
4539 4941 0.448593 GGAGACGACTGAGAAGACGG 59.551 60.000 0.00 0.00 0.00 4.79
4540 4942 1.444836 AGGAGACGACTGAGAAGACG 58.555 55.000 0.00 0.00 0.00 4.18
4541 4943 3.078837 AGAAGGAGACGACTGAGAAGAC 58.921 50.000 0.00 0.00 0.00 3.01
4542 4944 3.340034 GAGAAGGAGACGACTGAGAAGA 58.660 50.000 0.00 0.00 0.00 2.87
4543 4945 2.422127 GGAGAAGGAGACGACTGAGAAG 59.578 54.545 0.00 0.00 0.00 2.85
4544 4946 2.438411 GGAGAAGGAGACGACTGAGAA 58.562 52.381 0.00 0.00 0.00 2.87
4545 4947 1.676314 CGGAGAAGGAGACGACTGAGA 60.676 57.143 0.00 0.00 0.00 3.27
4546 4948 0.730265 CGGAGAAGGAGACGACTGAG 59.270 60.000 0.00 0.00 0.00 3.35
4547 4949 0.677098 CCGGAGAAGGAGACGACTGA 60.677 60.000 0.00 0.00 0.00 3.41
4548 4950 1.803943 CCGGAGAAGGAGACGACTG 59.196 63.158 0.00 0.00 0.00 3.51
4549 4951 2.047443 GCCGGAGAAGGAGACGACT 61.047 63.158 5.05 0.00 0.00 4.18
4550 4952 2.490685 GCCGGAGAAGGAGACGAC 59.509 66.667 5.05 0.00 0.00 4.34
4551 4953 3.132139 CGCCGGAGAAGGAGACGA 61.132 66.667 5.05 0.00 32.51 4.20
4552 4954 3.398353 GACGCCGGAGAAGGAGACG 62.398 68.421 13.83 0.73 35.00 4.18
4553 4955 1.995646 GAGACGCCGGAGAAGGAGAC 61.996 65.000 13.83 0.00 35.00 3.36
4554 4956 1.749638 GAGACGCCGGAGAAGGAGA 60.750 63.158 13.83 0.00 35.00 3.71
4555 4957 2.802106 GAGACGCCGGAGAAGGAG 59.198 66.667 13.83 0.00 37.11 3.69
4556 4958 3.132139 CGAGACGCCGGAGAAGGA 61.132 66.667 13.83 0.00 0.00 3.36
4557 4959 2.697761 TTCGAGACGCCGGAGAAGG 61.698 63.158 13.83 0.00 0.00 3.46
4558 4960 1.514443 GTTCGAGACGCCGGAGAAG 60.514 63.158 13.83 0.00 0.00 2.85
4559 4961 1.919956 GAGTTCGAGACGCCGGAGAA 61.920 60.000 13.83 0.41 0.00 2.87
4560 4962 2.359602 AGTTCGAGACGCCGGAGA 60.360 61.111 13.83 0.00 0.00 3.71
4561 4963 2.100603 GAGTTCGAGACGCCGGAG 59.899 66.667 5.05 3.72 0.00 4.63
4562 4964 3.796443 CGAGTTCGAGACGCCGGA 61.796 66.667 5.05 0.00 43.02 5.14
4563 4965 4.831307 CCGAGTTCGAGACGCCGG 62.831 72.222 0.00 0.00 43.02 6.13
4565 4967 3.628280 AAGCCGAGTTCGAGACGCC 62.628 63.158 2.59 0.00 43.02 5.68
4566 4968 1.675524 GAAAGCCGAGTTCGAGACGC 61.676 60.000 2.59 0.00 43.02 5.19
4567 4969 0.386858 TGAAAGCCGAGTTCGAGACG 60.387 55.000 2.59 0.00 43.02 4.18
4568 4970 1.721926 CTTGAAAGCCGAGTTCGAGAC 59.278 52.381 2.59 0.00 43.02 3.36
4569 4971 1.935300 GCTTGAAAGCCGAGTTCGAGA 60.935 52.381 3.56 0.00 46.20 4.04
4570 4972 0.440371 GCTTGAAAGCCGAGTTCGAG 59.560 55.000 3.56 5.88 46.20 4.04
4571 4973 2.528797 GCTTGAAAGCCGAGTTCGA 58.471 52.632 3.56 0.00 46.20 3.71
4581 4983 4.843220 AGGATGTTGAAGTGCTTGAAAG 57.157 40.909 0.00 0.00 0.00 2.62
4582 4984 6.061441 TCTTAGGATGTTGAAGTGCTTGAAA 58.939 36.000 0.00 0.00 0.00 2.69
4583 4985 5.620206 TCTTAGGATGTTGAAGTGCTTGAA 58.380 37.500 0.00 0.00 0.00 2.69
4584 4986 5.227569 TCTTAGGATGTTGAAGTGCTTGA 57.772 39.130 0.00 0.00 0.00 3.02
4585 4987 5.163683 CCATCTTAGGATGTTGAAGTGCTTG 60.164 44.000 13.26 0.00 45.66 4.01
4586 4988 4.946157 CCATCTTAGGATGTTGAAGTGCTT 59.054 41.667 13.26 0.00 45.66 3.91
4587 4989 4.225942 TCCATCTTAGGATGTTGAAGTGCT 59.774 41.667 13.26 0.00 45.66 4.40
4588 4990 4.333926 GTCCATCTTAGGATGTTGAAGTGC 59.666 45.833 13.26 0.00 45.66 4.40
4589 4991 4.568359 CGTCCATCTTAGGATGTTGAAGTG 59.432 45.833 13.26 0.00 45.66 3.16
4590 4992 4.383118 CCGTCCATCTTAGGATGTTGAAGT 60.383 45.833 13.26 0.00 45.66 3.01
4591 4993 4.122776 CCGTCCATCTTAGGATGTTGAAG 58.877 47.826 13.26 6.97 45.66 3.02
4592 4994 3.681594 GCCGTCCATCTTAGGATGTTGAA 60.682 47.826 13.26 0.00 45.66 2.69
4593 4995 2.158957 GCCGTCCATCTTAGGATGTTGA 60.159 50.000 13.26 2.42 45.66 3.18
4594 4996 2.158900 AGCCGTCCATCTTAGGATGTTG 60.159 50.000 13.26 3.32 45.66 3.33
4595 4997 2.119495 AGCCGTCCATCTTAGGATGTT 58.881 47.619 13.26 0.00 45.66 2.71
4596 4998 1.794714 AGCCGTCCATCTTAGGATGT 58.205 50.000 13.26 0.00 45.66 3.06
4597 4999 2.487934 CAAGCCGTCCATCTTAGGATG 58.512 52.381 7.84 7.84 46.41 3.51
4598 5000 1.202698 GCAAGCCGTCCATCTTAGGAT 60.203 52.381 0.00 0.00 40.42 3.24
4599 5001 0.178068 GCAAGCCGTCCATCTTAGGA 59.822 55.000 0.00 0.00 34.64 2.94
4600 5002 0.107703 TGCAAGCCGTCCATCTTAGG 60.108 55.000 0.00 0.00 0.00 2.69
4601 5003 1.009829 GTGCAAGCCGTCCATCTTAG 58.990 55.000 0.00 0.00 0.00 2.18
4602 5004 0.739462 CGTGCAAGCCGTCCATCTTA 60.739 55.000 0.00 0.00 0.00 2.10
4603 5005 2.034879 CGTGCAAGCCGTCCATCTT 61.035 57.895 0.00 0.00 0.00 2.40
4604 5006 2.244117 ATCGTGCAAGCCGTCCATCT 62.244 55.000 0.00 0.00 0.00 2.90
4605 5007 1.766143 GATCGTGCAAGCCGTCCATC 61.766 60.000 0.00 0.00 0.00 3.51
4606 5008 1.815421 GATCGTGCAAGCCGTCCAT 60.815 57.895 0.00 0.00 0.00 3.41
4607 5009 2.434185 GATCGTGCAAGCCGTCCA 60.434 61.111 0.00 0.00 0.00 4.02
4608 5010 1.766143 GATGATCGTGCAAGCCGTCC 61.766 60.000 0.00 0.00 0.00 4.79
4609 5011 1.638467 GATGATCGTGCAAGCCGTC 59.362 57.895 0.00 0.00 0.00 4.79
4610 5012 1.815421 GGATGATCGTGCAAGCCGT 60.815 57.895 0.90 0.00 0.00 5.68
4611 5013 1.091771 AAGGATGATCGTGCAAGCCG 61.092 55.000 9.29 0.00 0.00 5.52
4612 5014 0.379669 CAAGGATGATCGTGCAAGCC 59.620 55.000 9.29 0.00 0.00 4.35
4613 5015 0.248377 GCAAGGATGATCGTGCAAGC 60.248 55.000 9.29 8.13 40.81 4.01
4614 5016 1.089112 TGCAAGGATGATCGTGCAAG 58.911 50.000 16.87 0.00 45.91 4.01
4615 5017 3.246403 TGCAAGGATGATCGTGCAA 57.754 47.368 16.87 4.58 45.91 4.08
4617 5019 1.268896 CCAATGCAAGGATGATCGTGC 60.269 52.381 11.48 11.48 41.34 5.34
4618 5020 1.268896 GCCAATGCAAGGATGATCGTG 60.269 52.381 12.36 0.00 37.47 4.35
4619 5021 1.027357 GCCAATGCAAGGATGATCGT 58.973 50.000 12.36 0.00 37.47 3.73
4620 5022 1.026584 TGCCAATGCAAGGATGATCG 58.973 50.000 12.36 0.00 46.66 3.69
4631 5033 0.099436 GACGAGTTGGATGCCAATGC 59.901 55.000 1.79 0.00 45.80 3.56
4632 5034 0.734889 GGACGAGTTGGATGCCAATG 59.265 55.000 1.79 0.00 45.80 2.82
4633 5035 0.327924 TGGACGAGTTGGATGCCAAT 59.672 50.000 1.79 0.00 45.80 3.16
4634 5036 0.327924 ATGGACGAGTTGGATGCCAA 59.672 50.000 0.00 0.00 41.69 4.52
4635 5037 0.107703 GATGGACGAGTTGGATGCCA 60.108 55.000 0.00 0.00 0.00 4.92
4636 5038 2.695314 GATGGACGAGTTGGATGCC 58.305 57.895 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.