Multiple sequence alignment - TraesCS2D01G168600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G168600 chr2D 100.000 2996 0 0 1 2996 112551733 112548738 0.000000e+00 5533.0
1 TraesCS2D01G168600 chr2A 91.438 2511 135 42 410 2886 113831056 113828592 0.000000e+00 3373.0
2 TraesCS2D01G168600 chr2A 80.153 262 31 15 363 607 699416872 699416615 3.070000e-40 176.0
3 TraesCS2D01G168600 chr2A 89.362 141 12 1 6 146 113835689 113835552 1.100000e-39 174.0
4 TraesCS2D01G168600 chr2A 94.845 97 5 0 2900 2996 113827484 113827388 5.170000e-33 152.0
5 TraesCS2D01G168600 chr2A 92.157 51 2 2 355 405 1475978 1475930 1.490000e-08 71.3
6 TraesCS2D01G168600 chr2B 91.988 2309 107 36 723 2996 162874014 162871749 0.000000e+00 3168.0
7 TraesCS2D01G168600 chr2B 80.597 134 17 7 353 483 360843630 360843757 8.840000e-16 95.3
8 TraesCS2D01G168600 chr3D 83.133 249 30 6 408 644 536888142 536888390 1.810000e-52 217.0
9 TraesCS2D01G168600 chr5D 87.166 187 14 4 408 584 103631942 103632128 1.410000e-48 204.0
10 TraesCS2D01G168600 chr5A 79.487 312 41 15 353 646 340428097 340428403 1.820000e-47 200.0
11 TraesCS2D01G168600 chr5A 82.407 108 16 3 1430 1534 385955825 385955932 1.140000e-14 91.6
12 TraesCS2D01G168600 chr5A 78.226 124 21 5 354 472 569682329 569682451 1.150000e-09 75.0
13 TraesCS2D01G168600 chr7D 79.605 304 41 13 353 638 638606853 638606553 6.550000e-47 198.0
14 TraesCS2D01G168600 chr7D 78.667 300 48 10 353 638 243965413 243965710 5.100000e-43 185.0
15 TraesCS2D01G168600 chr7D 78.388 273 42 10 355 613 30752531 30752262 8.590000e-36 161.0
16 TraesCS2D01G168600 chr3A 80.714 280 33 13 356 618 648873007 648872732 6.550000e-47 198.0
17 TraesCS2D01G168600 chr3A 75.273 275 39 14 355 614 737464644 737464904 1.470000e-18 104.0
18 TraesCS2D01G168600 chr1B 80.882 272 33 11 352 607 688380606 688380338 2.360000e-46 196.0
19 TraesCS2D01G168600 chr7B 79.530 298 40 13 359 638 702385242 702385536 3.050000e-45 193.0
20 TraesCS2D01G168600 chr7A 79.125 297 40 14 364 641 632669235 632668942 5.100000e-43 185.0
21 TraesCS2D01G168600 chr1D 84.530 181 24 4 1473 1651 475864104 475864282 3.070000e-40 176.0
22 TraesCS2D01G168600 chr3B 79.668 241 24 15 353 571 143311478 143311241 1.860000e-32 150.0
23 TraesCS2D01G168600 chr3B 80.000 125 19 6 364 483 149452081 149451958 1.480000e-13 87.9
24 TraesCS2D01G168600 chr6D 79.565 230 20 13 353 558 471569548 471569322 4.030000e-29 139.0
25 TraesCS2D01G168600 chr5B 84.615 104 9 6 1436 1534 334683195 334683296 2.460000e-16 97.1
26 TraesCS2D01G168600 chr5B 92.188 64 5 0 1471 1534 334593990 334594053 1.140000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G168600 chr2D 112548738 112551733 2995 True 5533.0 5533 100.0000 1 2996 1 chr2D.!!$R1 2995
1 TraesCS2D01G168600 chr2A 113827388 113831056 3668 True 1762.5 3373 93.1415 410 2996 2 chr2A.!!$R4 2586
2 TraesCS2D01G168600 chr2B 162871749 162874014 2265 True 3168.0 3168 91.9880 723 2996 1 chr2B.!!$R1 2273

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
85 86 0.03582 TAGGGCGGTGTGGATTGAAC 60.036 55.0 0.0 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2049 2091 1.673767 TCTTCCCTCTTGCCAAGGAT 58.326 50.0 4.3 0.0 35.83 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 3.470567 CGTCACTCGCGCTTCCAC 61.471 66.667 5.56 0.00 0.00 4.02
38 39 3.112709 GTCACTCGCGCTTCCACC 61.113 66.667 5.56 0.00 0.00 4.61
39 40 3.611674 TCACTCGCGCTTCCACCA 61.612 61.111 5.56 0.00 0.00 4.17
40 41 3.414700 CACTCGCGCTTCCACCAC 61.415 66.667 5.56 0.00 0.00 4.16
41 42 4.681978 ACTCGCGCTTCCACCACC 62.682 66.667 5.56 0.00 0.00 4.61
42 43 4.680237 CTCGCGCTTCCACCACCA 62.680 66.667 5.56 0.00 0.00 4.17
43 44 4.980805 TCGCGCTTCCACCACCAC 62.981 66.667 5.56 0.00 0.00 4.16
45 46 4.947147 GCGCTTCCACCACCACCA 62.947 66.667 0.00 0.00 0.00 4.17
46 47 2.978010 CGCTTCCACCACCACCAC 60.978 66.667 0.00 0.00 0.00 4.16
47 48 2.597510 GCTTCCACCACCACCACC 60.598 66.667 0.00 0.00 0.00 4.61
48 49 2.923035 CTTCCACCACCACCACCA 59.077 61.111 0.00 0.00 0.00 4.17
49 50 1.528309 CTTCCACCACCACCACCAC 60.528 63.158 0.00 0.00 0.00 4.16
50 51 2.976494 CTTCCACCACCACCACCACC 62.976 65.000 0.00 0.00 0.00 4.61
51 52 4.947147 CCACCACCACCACCACCG 62.947 72.222 0.00 0.00 0.00 4.94
52 53 3.867783 CACCACCACCACCACCGA 61.868 66.667 0.00 0.00 0.00 4.69
53 54 3.556306 ACCACCACCACCACCGAG 61.556 66.667 0.00 0.00 0.00 4.63
54 55 3.556306 CCACCACCACCACCGAGT 61.556 66.667 0.00 0.00 0.00 4.18
55 56 2.030562 CACCACCACCACCGAGTC 59.969 66.667 0.00 0.00 0.00 3.36
56 57 2.445085 ACCACCACCACCGAGTCA 60.445 61.111 0.00 0.00 0.00 3.41
57 58 2.030562 CCACCACCACCGAGTCAC 59.969 66.667 0.00 0.00 0.00 3.67
58 59 2.030562 CACCACCACCGAGTCACC 59.969 66.667 0.00 0.00 0.00 4.02
59 60 3.239253 ACCACCACCGAGTCACCC 61.239 66.667 0.00 0.00 0.00 4.61
60 61 4.373116 CCACCACCGAGTCACCCG 62.373 72.222 0.00 0.00 0.00 5.28
61 62 3.612681 CACCACCGAGTCACCCGT 61.613 66.667 0.00 0.00 0.00 5.28
62 63 3.300765 ACCACCGAGTCACCCGTC 61.301 66.667 0.00 0.00 0.00 4.79
63 64 4.415332 CCACCGAGTCACCCGTCG 62.415 72.222 0.00 0.00 35.91 5.12
67 68 3.129502 CGAGTCACCCGTCGCCTA 61.130 66.667 0.00 0.00 0.00 3.93
68 69 2.799371 GAGTCACCCGTCGCCTAG 59.201 66.667 0.00 0.00 0.00 3.02
69 70 2.754658 AGTCACCCGTCGCCTAGG 60.755 66.667 3.67 3.67 0.00 3.02
80 81 3.480133 GCCTAGGGCGGTGTGGAT 61.480 66.667 11.72 0.00 39.62 3.41
81 82 3.043999 GCCTAGGGCGGTGTGGATT 62.044 63.158 11.72 0.00 39.62 3.01
82 83 1.153168 CCTAGGGCGGTGTGGATTG 60.153 63.158 0.00 0.00 0.00 2.67
83 84 1.622607 CCTAGGGCGGTGTGGATTGA 61.623 60.000 0.00 0.00 0.00 2.57
84 85 0.251916 CTAGGGCGGTGTGGATTGAA 59.748 55.000 0.00 0.00 0.00 2.69
85 86 0.035820 TAGGGCGGTGTGGATTGAAC 60.036 55.000 0.00 0.00 0.00 3.18
86 87 2.686816 GGGCGGTGTGGATTGAACG 61.687 63.158 0.00 0.00 0.00 3.95
87 88 2.175811 GCGGTGTGGATTGAACGC 59.824 61.111 0.00 0.00 40.19 4.84
88 89 2.325082 GCGGTGTGGATTGAACGCT 61.325 57.895 0.00 0.00 43.24 5.07
89 90 1.787847 CGGTGTGGATTGAACGCTC 59.212 57.895 0.00 0.00 0.00 5.03
90 91 1.787847 GGTGTGGATTGAACGCTCG 59.212 57.895 0.00 0.00 0.00 5.03
91 92 0.949105 GGTGTGGATTGAACGCTCGT 60.949 55.000 0.00 0.00 0.00 4.18
92 93 0.163788 GTGTGGATTGAACGCTCGTG 59.836 55.000 0.00 0.00 0.00 4.35
93 94 0.948623 TGTGGATTGAACGCTCGTGG 60.949 55.000 0.00 0.00 0.00 4.94
94 95 0.669318 GTGGATTGAACGCTCGTGGA 60.669 55.000 0.00 0.00 0.00 4.02
95 96 0.389817 TGGATTGAACGCTCGTGGAG 60.390 55.000 0.00 0.00 0.00 3.86
96 97 0.389948 GGATTGAACGCTCGTGGAGT 60.390 55.000 0.00 0.00 31.39 3.85
97 98 0.992802 GATTGAACGCTCGTGGAGTC 59.007 55.000 0.00 0.00 31.39 3.36
98 99 0.317160 ATTGAACGCTCGTGGAGTCA 59.683 50.000 0.00 0.00 31.39 3.41
99 100 0.103390 TTGAACGCTCGTGGAGTCAA 59.897 50.000 0.00 0.00 31.39 3.18
100 101 0.318699 TGAACGCTCGTGGAGTCAAG 60.319 55.000 0.00 0.00 31.39 3.02
101 102 0.318784 GAACGCTCGTGGAGTCAAGT 60.319 55.000 0.00 0.00 31.39 3.16
102 103 0.318784 AACGCTCGTGGAGTCAAGTC 60.319 55.000 0.00 0.00 31.39 3.01
103 104 1.285950 CGCTCGTGGAGTCAAGTCA 59.714 57.895 0.00 0.00 31.39 3.41
104 105 0.109086 CGCTCGTGGAGTCAAGTCAT 60.109 55.000 0.00 0.00 31.39 3.06
105 106 1.670087 CGCTCGTGGAGTCAAGTCATT 60.670 52.381 0.00 0.00 31.39 2.57
106 107 1.996191 GCTCGTGGAGTCAAGTCATTC 59.004 52.381 0.00 0.00 31.39 2.67
107 108 2.254459 CTCGTGGAGTCAAGTCATTCG 58.746 52.381 0.00 0.00 0.00 3.34
108 109 1.611977 TCGTGGAGTCAAGTCATTCGT 59.388 47.619 0.00 0.00 0.00 3.85
109 110 1.721389 CGTGGAGTCAAGTCATTCGTG 59.279 52.381 0.00 0.00 0.00 4.35
110 111 2.755650 GTGGAGTCAAGTCATTCGTGT 58.244 47.619 0.00 0.00 0.00 4.49
111 112 3.131396 GTGGAGTCAAGTCATTCGTGTT 58.869 45.455 0.00 0.00 0.00 3.32
112 113 3.059597 GTGGAGTCAAGTCATTCGTGTTG 60.060 47.826 0.00 0.00 0.00 3.33
113 114 2.480419 GGAGTCAAGTCATTCGTGTTGG 59.520 50.000 0.00 0.00 0.00 3.77
114 115 3.390135 GAGTCAAGTCATTCGTGTTGGA 58.610 45.455 0.00 0.00 0.00 3.53
115 116 3.997021 GAGTCAAGTCATTCGTGTTGGAT 59.003 43.478 0.00 0.00 0.00 3.41
116 117 3.997021 AGTCAAGTCATTCGTGTTGGATC 59.003 43.478 0.00 0.00 0.00 3.36
117 118 2.993220 TCAAGTCATTCGTGTTGGATCG 59.007 45.455 0.00 0.00 0.00 3.69
118 119 2.993220 CAAGTCATTCGTGTTGGATCGA 59.007 45.455 0.00 0.00 0.00 3.59
120 121 3.254060 AGTCATTCGTGTTGGATCGAAG 58.746 45.455 6.22 0.26 46.38 3.79
121 122 2.348666 GTCATTCGTGTTGGATCGAAGG 59.651 50.000 5.79 5.79 46.38 3.46
122 123 1.665679 CATTCGTGTTGGATCGAAGGG 59.334 52.381 6.22 0.00 46.38 3.95
123 124 0.036765 TTCGTGTTGGATCGAAGGGG 60.037 55.000 0.00 0.00 40.34 4.79
124 125 0.901114 TCGTGTTGGATCGAAGGGGA 60.901 55.000 0.00 0.00 33.13 4.81
125 126 0.460284 CGTGTTGGATCGAAGGGGAG 60.460 60.000 0.00 0.00 0.00 4.30
126 127 0.744771 GTGTTGGATCGAAGGGGAGC 60.745 60.000 0.00 0.00 0.00 4.70
127 128 1.198094 TGTTGGATCGAAGGGGAGCA 61.198 55.000 0.00 0.00 0.00 4.26
128 129 0.181350 GTTGGATCGAAGGGGAGCAT 59.819 55.000 0.00 0.00 0.00 3.79
129 130 0.469917 TTGGATCGAAGGGGAGCATC 59.530 55.000 0.00 0.00 0.00 3.91
130 131 0.690744 TGGATCGAAGGGGAGCATCA 60.691 55.000 0.00 0.00 36.25 3.07
131 132 0.689623 GGATCGAAGGGGAGCATCAT 59.310 55.000 0.00 0.00 36.25 2.45
132 133 1.072965 GGATCGAAGGGGAGCATCATT 59.927 52.381 0.00 0.00 36.25 2.57
133 134 2.149578 GATCGAAGGGGAGCATCATTG 58.850 52.381 0.00 0.00 36.25 2.82
134 135 0.181114 TCGAAGGGGAGCATCATTGG 59.819 55.000 0.00 0.00 36.25 3.16
135 136 0.820891 CGAAGGGGAGCATCATTGGG 60.821 60.000 0.00 0.00 36.25 4.12
136 137 1.075748 AAGGGGAGCATCATTGGGC 60.076 57.895 0.00 0.00 36.25 5.36
137 138 2.522680 GGGGAGCATCATTGGGCC 60.523 66.667 0.00 0.00 36.25 5.80
138 139 2.908940 GGGAGCATCATTGGGCCG 60.909 66.667 0.00 0.00 36.25 6.13
139 140 2.908940 GGAGCATCATTGGGCCGG 60.909 66.667 0.00 0.00 36.25 6.13
140 141 3.599704 GAGCATCATTGGGCCGGC 61.600 66.667 21.18 21.18 33.17 6.13
143 144 2.203139 CATCATTGGGCCGGCGTA 60.203 61.111 22.54 9.05 0.00 4.42
144 145 2.203153 ATCATTGGGCCGGCGTAC 60.203 61.111 22.54 14.06 0.00 3.67
145 146 2.742116 ATCATTGGGCCGGCGTACT 61.742 57.895 22.54 2.60 0.00 2.73
146 147 2.265467 ATCATTGGGCCGGCGTACTT 62.265 55.000 22.54 0.30 0.00 2.24
147 148 2.437716 ATTGGGCCGGCGTACTTG 60.438 61.111 22.54 0.00 0.00 3.16
148 149 3.987954 ATTGGGCCGGCGTACTTGG 62.988 63.158 22.54 0.00 0.00 3.61
152 153 4.452733 GCCGGCGTACTTGGCTCT 62.453 66.667 12.58 0.00 45.40 4.09
153 154 3.072486 GCCGGCGTACTTGGCTCTA 62.072 63.158 12.58 0.00 45.40 2.43
154 155 1.740285 CCGGCGTACTTGGCTCTAT 59.260 57.895 6.01 0.00 0.00 1.98
155 156 0.956633 CCGGCGTACTTGGCTCTATA 59.043 55.000 6.01 0.00 0.00 1.31
156 157 1.338973 CCGGCGTACTTGGCTCTATAA 59.661 52.381 6.01 0.00 0.00 0.98
157 158 2.223876 CCGGCGTACTTGGCTCTATAAA 60.224 50.000 6.01 0.00 0.00 1.40
158 159 3.554337 CCGGCGTACTTGGCTCTATAAAT 60.554 47.826 6.01 0.00 0.00 1.40
159 160 4.056050 CGGCGTACTTGGCTCTATAAATT 58.944 43.478 0.00 0.00 0.00 1.82
160 161 4.510340 CGGCGTACTTGGCTCTATAAATTT 59.490 41.667 0.00 0.00 0.00 1.82
161 162 5.558273 CGGCGTACTTGGCTCTATAAATTTG 60.558 44.000 0.00 0.00 0.00 2.32
162 163 5.526111 GGCGTACTTGGCTCTATAAATTTGA 59.474 40.000 0.00 0.00 0.00 2.69
163 164 6.204882 GGCGTACTTGGCTCTATAAATTTGAT 59.795 38.462 0.00 0.00 0.00 2.57
164 165 7.291567 GCGTACTTGGCTCTATAAATTTGATC 58.708 38.462 0.00 0.00 0.00 2.92
165 166 7.042051 GCGTACTTGGCTCTATAAATTTGATCA 60.042 37.037 0.00 0.00 0.00 2.92
166 167 8.826710 CGTACTTGGCTCTATAAATTTGATCAA 58.173 33.333 3.38 3.38 0.00 2.57
194 195 8.873215 TTTACAAAGTTTGACTTTTCACACAA 57.127 26.923 22.23 0.00 45.38 3.33
195 196 8.873215 TTACAAAGTTTGACTTTTCACACAAA 57.127 26.923 22.23 0.00 45.38 2.83
196 197 7.778470 ACAAAGTTTGACTTTTCACACAAAA 57.222 28.000 22.23 0.00 45.38 2.44
197 198 8.376889 ACAAAGTTTGACTTTTCACACAAAAT 57.623 26.923 22.23 0.00 45.38 1.82
198 199 8.281893 ACAAAGTTTGACTTTTCACACAAAATG 58.718 29.630 22.23 0.00 45.38 2.32
199 200 7.961325 AAGTTTGACTTTTCACACAAAATGT 57.039 28.000 0.00 0.00 37.25 2.71
200 201 9.482627 AAAGTTTGACTTTTCACACAAAATGTA 57.517 25.926 0.44 0.00 45.38 2.29
201 202 9.651913 AAGTTTGACTTTTCACACAAAATGTAT 57.348 25.926 0.00 0.00 35.30 2.29
212 213 9.535878 TTCACACAAAATGTATATCTATACGCA 57.464 29.630 3.59 0.00 40.64 5.24
213 214 8.974408 TCACACAAAATGTATATCTATACGCAC 58.026 33.333 3.59 0.00 40.64 5.34
214 215 8.978539 CACACAAAATGTATATCTATACGCACT 58.021 33.333 3.59 0.00 40.64 4.40
228 229 8.797266 TCTATACGCACTACAATATGAAACAG 57.203 34.615 0.00 0.00 0.00 3.16
229 230 8.626526 TCTATACGCACTACAATATGAAACAGA 58.373 33.333 0.00 0.00 0.00 3.41
230 231 9.244799 CTATACGCACTACAATATGAAACAGAA 57.755 33.333 0.00 0.00 0.00 3.02
231 232 6.408858 ACGCACTACAATATGAAACAGAAG 57.591 37.500 0.00 0.00 0.00 2.85
232 233 5.351465 ACGCACTACAATATGAAACAGAAGG 59.649 40.000 0.00 0.00 0.00 3.46
233 234 5.580691 CGCACTACAATATGAAACAGAAGGA 59.419 40.000 0.00 0.00 0.00 3.36
234 235 6.237942 CGCACTACAATATGAAACAGAAGGAG 60.238 42.308 0.00 0.00 0.00 3.69
235 236 6.595716 GCACTACAATATGAAACAGAAGGAGT 59.404 38.462 0.00 0.00 0.00 3.85
236 237 7.764443 GCACTACAATATGAAACAGAAGGAGTA 59.236 37.037 0.00 0.00 0.00 2.59
237 238 9.088512 CACTACAATATGAAACAGAAGGAGTAC 57.911 37.037 0.00 0.00 0.00 2.73
238 239 7.974501 ACTACAATATGAAACAGAAGGAGTACG 59.025 37.037 0.00 0.00 0.00 3.67
239 240 6.931838 ACAATATGAAACAGAAGGAGTACGA 58.068 36.000 0.00 0.00 0.00 3.43
240 241 7.036220 ACAATATGAAACAGAAGGAGTACGAG 58.964 38.462 0.00 0.00 0.00 4.18
241 242 3.936372 TGAAACAGAAGGAGTACGAGG 57.064 47.619 0.00 0.00 0.00 4.63
242 243 3.493334 TGAAACAGAAGGAGTACGAGGA 58.507 45.455 0.00 0.00 0.00 3.71
243 244 3.255149 TGAAACAGAAGGAGTACGAGGAC 59.745 47.826 0.00 0.00 0.00 3.85
244 245 2.581216 ACAGAAGGAGTACGAGGACA 57.419 50.000 0.00 0.00 0.00 4.02
245 246 2.161030 ACAGAAGGAGTACGAGGACAC 58.839 52.381 0.00 0.00 0.00 3.67
246 247 2.160205 CAGAAGGAGTACGAGGACACA 58.840 52.381 0.00 0.00 0.00 3.72
247 248 2.557056 CAGAAGGAGTACGAGGACACAA 59.443 50.000 0.00 0.00 0.00 3.33
248 249 2.557490 AGAAGGAGTACGAGGACACAAC 59.443 50.000 0.00 0.00 0.00 3.32
249 250 0.879765 AGGAGTACGAGGACACAACG 59.120 55.000 0.00 0.00 0.00 4.10
250 251 0.595095 GGAGTACGAGGACACAACGT 59.405 55.000 0.00 0.00 42.70 3.99
251 252 1.806542 GGAGTACGAGGACACAACGTA 59.193 52.381 0.00 0.00 40.61 3.57
252 253 2.159599 GGAGTACGAGGACACAACGTAG 60.160 54.545 0.00 0.00 41.80 3.51
271 272 7.086230 ACGTAGTTTCCAAATTGTGTTTACA 57.914 32.000 0.00 0.00 37.78 2.41
272 273 6.968335 ACGTAGTTTCCAAATTGTGTTTACAC 59.032 34.615 6.07 6.07 37.78 2.90
283 284 3.865224 GTGTTTACACAAGTACACCCG 57.135 47.619 8.09 0.00 45.75 5.28
284 285 2.545106 GTGTTTACACAAGTACACCCGG 59.455 50.000 8.09 0.00 45.75 5.73
285 286 2.170187 TGTTTACACAAGTACACCCGGT 59.830 45.455 0.00 0.00 31.42 5.28
286 287 2.802247 GTTTACACAAGTACACCCGGTC 59.198 50.000 0.00 0.00 0.00 4.79
287 288 1.999648 TACACAAGTACACCCGGTCT 58.000 50.000 0.00 0.00 0.00 3.85
288 289 1.125633 ACACAAGTACACCCGGTCTT 58.874 50.000 0.00 0.00 0.00 3.01
289 290 1.487558 ACACAAGTACACCCGGTCTTT 59.512 47.619 0.00 0.00 0.00 2.52
290 291 2.092807 ACACAAGTACACCCGGTCTTTT 60.093 45.455 0.00 0.00 0.00 2.27
291 292 2.946990 CACAAGTACACCCGGTCTTTTT 59.053 45.455 0.00 0.00 0.00 1.94
314 315 7.837202 TTTTACATAAGTACGACATGGAAGG 57.163 36.000 0.00 0.00 0.00 3.46
315 316 4.402056 ACATAAGTACGACATGGAAGGG 57.598 45.455 0.00 0.00 0.00 3.95
316 317 3.773119 ACATAAGTACGACATGGAAGGGT 59.227 43.478 0.00 0.00 0.00 4.34
317 318 4.224370 ACATAAGTACGACATGGAAGGGTT 59.776 41.667 0.00 0.00 0.00 4.11
318 319 3.329929 AAGTACGACATGGAAGGGTTC 57.670 47.619 0.00 0.00 0.00 3.62
319 320 2.253610 AGTACGACATGGAAGGGTTCA 58.746 47.619 0.00 0.00 0.00 3.18
320 321 2.028385 AGTACGACATGGAAGGGTTCAC 60.028 50.000 0.00 0.00 0.00 3.18
321 322 1.056660 ACGACATGGAAGGGTTCACT 58.943 50.000 0.00 0.00 0.00 3.41
322 323 1.002087 ACGACATGGAAGGGTTCACTC 59.998 52.381 0.00 0.00 0.00 3.51
323 324 1.001974 CGACATGGAAGGGTTCACTCA 59.998 52.381 0.00 0.00 0.00 3.41
324 325 2.549992 CGACATGGAAGGGTTCACTCAA 60.550 50.000 0.00 0.00 0.00 3.02
325 326 3.690460 GACATGGAAGGGTTCACTCAAT 58.310 45.455 0.00 0.00 0.00 2.57
326 327 4.622933 CGACATGGAAGGGTTCACTCAATA 60.623 45.833 0.00 0.00 0.00 1.90
327 328 5.440610 GACATGGAAGGGTTCACTCAATAT 58.559 41.667 0.00 0.00 0.00 1.28
328 329 5.831103 ACATGGAAGGGTTCACTCAATATT 58.169 37.500 0.00 0.00 0.00 1.28
329 330 6.969043 ACATGGAAGGGTTCACTCAATATTA 58.031 36.000 0.00 0.00 0.00 0.98
330 331 7.410174 ACATGGAAGGGTTCACTCAATATTAA 58.590 34.615 0.00 0.00 0.00 1.40
331 332 7.339466 ACATGGAAGGGTTCACTCAATATTAAC 59.661 37.037 0.00 0.00 0.00 2.01
332 333 6.184789 TGGAAGGGTTCACTCAATATTAACC 58.815 40.000 8.11 8.11 39.09 2.85
353 354 7.786178 AACCCTTAATTTTTGTCAAAGAAGC 57.214 32.000 0.00 0.00 0.00 3.86
354 355 5.983118 ACCCTTAATTTTTGTCAAAGAAGCG 59.017 36.000 0.00 0.00 0.00 4.68
355 356 6.183360 ACCCTTAATTTTTGTCAAAGAAGCGA 60.183 34.615 0.00 0.00 0.00 4.93
356 357 6.699642 CCCTTAATTTTTGTCAAAGAAGCGAA 59.300 34.615 0.00 0.00 0.00 4.70
357 358 7.096065 CCCTTAATTTTTGTCAAAGAAGCGAAG 60.096 37.037 0.00 0.44 0.00 3.79
379 380 2.879103 ACCTGTGGTTGGATGGTTAG 57.121 50.000 0.00 0.00 27.29 2.34
380 381 1.354368 ACCTGTGGTTGGATGGTTAGG 59.646 52.381 0.00 0.00 27.29 2.69
381 382 1.633432 CCTGTGGTTGGATGGTTAGGA 59.367 52.381 0.00 0.00 0.00 2.94
382 383 2.356125 CCTGTGGTTGGATGGTTAGGAG 60.356 54.545 0.00 0.00 0.00 3.69
383 384 1.633432 TGTGGTTGGATGGTTAGGAGG 59.367 52.381 0.00 0.00 0.00 4.30
384 385 1.913419 GTGGTTGGATGGTTAGGAGGA 59.087 52.381 0.00 0.00 0.00 3.71
385 386 1.913419 TGGTTGGATGGTTAGGAGGAC 59.087 52.381 0.00 0.00 0.00 3.85
386 387 1.913419 GGTTGGATGGTTAGGAGGACA 59.087 52.381 0.00 0.00 0.00 4.02
387 388 2.092914 GGTTGGATGGTTAGGAGGACAG 60.093 54.545 0.00 0.00 0.00 3.51
388 389 2.572104 GTTGGATGGTTAGGAGGACAGT 59.428 50.000 0.00 0.00 0.00 3.55
389 390 2.187958 TGGATGGTTAGGAGGACAGTG 58.812 52.381 0.00 0.00 0.00 3.66
390 391 1.486726 GGATGGTTAGGAGGACAGTGG 59.513 57.143 0.00 0.00 0.00 4.00
391 392 2.188817 GATGGTTAGGAGGACAGTGGT 58.811 52.381 0.00 0.00 0.00 4.16
392 393 3.371965 GATGGTTAGGAGGACAGTGGTA 58.628 50.000 0.00 0.00 0.00 3.25
393 394 2.532843 TGGTTAGGAGGACAGTGGTAC 58.467 52.381 0.00 0.00 0.00 3.34
394 395 2.111255 TGGTTAGGAGGACAGTGGTACT 59.889 50.000 0.00 0.00 42.39 2.73
395 396 3.171528 GGTTAGGAGGACAGTGGTACTT 58.828 50.000 0.00 0.00 38.71 2.24
396 397 3.195182 GGTTAGGAGGACAGTGGTACTTC 59.805 52.174 0.00 0.00 38.71 3.01
397 398 1.939980 AGGAGGACAGTGGTACTTCC 58.060 55.000 0.00 1.40 38.71 3.46
398 399 1.433592 AGGAGGACAGTGGTACTTCCT 59.566 52.381 10.45 10.45 38.71 3.36
399 400 2.653366 AGGAGGACAGTGGTACTTCCTA 59.347 50.000 13.25 0.00 38.71 2.94
400 401 3.025262 GGAGGACAGTGGTACTTCCTAG 58.975 54.545 0.00 0.00 38.71 3.02
401 402 3.563915 GGAGGACAGTGGTACTTCCTAGT 60.564 52.174 0.00 0.00 38.71 2.57
402 403 3.695556 GAGGACAGTGGTACTTCCTAGTC 59.304 52.174 0.00 0.00 38.71 2.59
403 404 2.759535 GGACAGTGGTACTTCCTAGTCC 59.240 54.545 0.00 0.00 41.14 3.85
404 405 2.759535 GACAGTGGTACTTCCTAGTCCC 59.240 54.545 0.00 0.00 35.78 4.46
405 406 1.749634 CAGTGGTACTTCCTAGTCCCG 59.250 57.143 0.00 0.00 33.24 5.14
406 407 0.459078 GTGGTACTTCCTAGTCCCGC 59.541 60.000 0.00 0.00 33.24 6.13
407 408 0.040058 TGGTACTTCCTAGTCCCGCA 59.960 55.000 0.00 0.00 33.24 5.69
408 409 0.459078 GGTACTTCCTAGTCCCGCAC 59.541 60.000 0.00 0.00 35.78 5.34
409 410 1.472188 GTACTTCCTAGTCCCGCACT 58.528 55.000 0.00 0.00 39.41 4.40
410 411 1.823610 GTACTTCCTAGTCCCGCACTT 59.176 52.381 0.00 0.00 36.43 3.16
411 412 0.608640 ACTTCCTAGTCCCGCACTTG 59.391 55.000 0.00 0.00 36.43 3.16
412 413 0.895530 CTTCCTAGTCCCGCACTTGA 59.104 55.000 0.00 0.00 36.43 3.02
413 414 0.606604 TTCCTAGTCCCGCACTTGAC 59.393 55.000 0.00 0.00 36.43 3.18
418 419 0.606401 AGTCCCGCACTTGACATTGG 60.606 55.000 0.00 0.00 33.89 3.16
431 432 5.477984 ACTTGACATTGGTGCTCACATTATT 59.522 36.000 2.21 0.00 0.00 1.40
432 433 5.981088 TGACATTGGTGCTCACATTATTT 57.019 34.783 2.21 0.00 0.00 1.40
436 437 5.711506 ACATTGGTGCTCACATTATTTCTGA 59.288 36.000 2.21 0.00 0.00 3.27
455 456 9.869757 ATTTCTGAATTTATTTTAGGTTTCCGG 57.130 29.630 0.00 0.00 0.00 5.14
456 457 8.411991 TTCTGAATTTATTTTAGGTTTCCGGT 57.588 30.769 0.00 0.00 0.00 5.28
476 477 1.001974 TGATGTTCGTTCAGTGGGAGG 59.998 52.381 0.00 0.00 0.00 4.30
483 484 0.244178 GTTCAGTGGGAGGAGACGTC 59.756 60.000 7.70 7.70 0.00 4.34
484 485 1.241990 TTCAGTGGGAGGAGACGTCG 61.242 60.000 10.46 0.00 0.00 5.12
485 486 1.674651 CAGTGGGAGGAGACGTCGA 60.675 63.158 10.46 0.00 0.00 4.20
487 488 1.674980 GTGGGAGGAGACGTCGACT 60.675 63.158 14.70 12.30 0.00 4.18
488 489 1.674651 TGGGAGGAGACGTCGACTG 60.675 63.158 17.72 9.79 0.00 3.51
510 517 1.883084 GGCGCCTATGGTGACTTCG 60.883 63.158 22.15 0.00 38.38 3.79
519 526 5.006746 GCCTATGGTGACTTCGTAAAATCTG 59.993 44.000 0.00 0.00 0.00 2.90
522 529 7.495934 CCTATGGTGACTTCGTAAAATCTGAAT 59.504 37.037 0.00 0.00 0.00 2.57
536 543 3.769739 TCTGAATATGTTATGCCGGCT 57.230 42.857 29.70 15.76 0.00 5.52
537 544 3.664107 TCTGAATATGTTATGCCGGCTC 58.336 45.455 29.70 13.87 0.00 4.70
538 545 3.070878 TCTGAATATGTTATGCCGGCTCA 59.929 43.478 29.70 20.43 0.00 4.26
539 546 3.402110 TGAATATGTTATGCCGGCTCAG 58.598 45.455 29.70 0.00 0.00 3.35
540 547 3.181455 TGAATATGTTATGCCGGCTCAGT 60.181 43.478 29.70 13.44 0.00 3.41
541 548 2.526304 TATGTTATGCCGGCTCAGTC 57.474 50.000 29.70 14.37 0.00 3.51
542 549 0.833287 ATGTTATGCCGGCTCAGTCT 59.167 50.000 29.70 5.58 0.00 3.24
543 550 0.175760 TGTTATGCCGGCTCAGTCTC 59.824 55.000 29.70 11.73 0.00 3.36
544 551 0.461961 GTTATGCCGGCTCAGTCTCT 59.538 55.000 29.70 4.41 0.00 3.10
545 552 0.747255 TTATGCCGGCTCAGTCTCTC 59.253 55.000 29.70 0.00 0.00 3.20
546 553 1.448119 TATGCCGGCTCAGTCTCTCG 61.448 60.000 29.70 0.00 0.00 4.04
549 556 2.477176 CCGGCTCAGTCTCTCGGAG 61.477 68.421 0.00 0.00 42.94 4.63
553 560 0.963355 GCTCAGTCTCTCGGAGGTGT 60.963 60.000 4.96 0.00 38.48 4.16
560 567 2.359531 GTCTCTCGGAGGTGTTCATAGG 59.640 54.545 4.96 0.00 0.00 2.57
561 568 2.025226 TCTCTCGGAGGTGTTCATAGGT 60.025 50.000 4.96 0.00 0.00 3.08
562 569 2.099921 CTCTCGGAGGTGTTCATAGGTG 59.900 54.545 4.96 0.00 0.00 4.00
569 576 4.409247 GGAGGTGTTCATAGGTGTAGGATT 59.591 45.833 0.00 0.00 0.00 3.01
570 577 5.359194 AGGTGTTCATAGGTGTAGGATTG 57.641 43.478 0.00 0.00 0.00 2.67
572 579 4.080526 GGTGTTCATAGGTGTAGGATTGGT 60.081 45.833 0.00 0.00 0.00 3.67
576 583 4.101114 TCATAGGTGTAGGATTGGTGTGT 58.899 43.478 0.00 0.00 0.00 3.72
577 584 2.859165 AGGTGTAGGATTGGTGTGTG 57.141 50.000 0.00 0.00 0.00 3.82
579 586 2.441750 AGGTGTAGGATTGGTGTGTGTT 59.558 45.455 0.00 0.00 0.00 3.32
583 590 5.242434 GTGTAGGATTGGTGTGTGTTCATA 58.758 41.667 0.00 0.00 0.00 2.15
584 591 5.703592 GTGTAGGATTGGTGTGTGTTCATAA 59.296 40.000 0.00 0.00 0.00 1.90
585 592 5.937540 TGTAGGATTGGTGTGTGTTCATAAG 59.062 40.000 0.00 0.00 0.00 1.73
586 593 5.241403 AGGATTGGTGTGTGTTCATAAGA 57.759 39.130 0.00 0.00 0.00 2.10
587 594 5.630121 AGGATTGGTGTGTGTTCATAAGAA 58.370 37.500 0.00 0.00 0.00 2.52
589 596 6.151648 AGGATTGGTGTGTGTTCATAAGAATG 59.848 38.462 0.00 0.00 35.92 2.67
590 597 6.150976 GGATTGGTGTGTGTTCATAAGAATGA 59.849 38.462 0.00 0.00 40.43 2.57
591 598 6.558771 TTGGTGTGTGTTCATAAGAATGAG 57.441 37.500 0.00 0.00 42.97 2.90
592 599 5.620206 TGGTGTGTGTTCATAAGAATGAGT 58.380 37.500 0.00 0.00 42.97 3.41
593 600 5.469760 TGGTGTGTGTTCATAAGAATGAGTG 59.530 40.000 0.00 0.00 42.97 3.51
600 607 7.278646 TGTGTTCATAAGAATGAGTGTATGCTC 59.721 37.037 0.00 0.00 42.97 4.26
603 610 7.272037 TCATAAGAATGAGTGTATGCTCGTA 57.728 36.000 0.00 0.00 37.20 3.43
613 620 5.391449 AGTGTATGCTCGTATATGTAAGCG 58.609 41.667 2.26 0.00 37.57 4.68
615 622 5.283247 GTGTATGCTCGTATATGTAAGCGAC 59.717 44.000 0.00 3.60 37.57 5.19
675 684 6.936335 AGAAAAAGTAAAAGCCATCCATTTGG 59.064 34.615 0.00 0.00 39.94 3.28
777 786 4.408821 TACCCGGCAAGGCAGCAG 62.409 66.667 0.00 0.01 39.21 4.24
839 851 1.290134 AATCCCCTCCACCTCACTTC 58.710 55.000 0.00 0.00 0.00 3.01
850 862 3.134458 CACCTCACTTCACTTGAACTCC 58.866 50.000 0.00 0.00 0.00 3.85
891 903 4.087892 CCCGCCTCTCACCACCAG 62.088 72.222 0.00 0.00 0.00 4.00
892 904 3.314331 CCGCCTCTCACCACCAGT 61.314 66.667 0.00 0.00 0.00 4.00
944 958 4.083590 TCGAGAGATATCGCTGATCACTTG 60.084 45.833 14.17 1.70 42.43 3.16
970 984 1.990060 CCTTCCTTCTCCTCCGCCA 60.990 63.158 0.00 0.00 0.00 5.69
1110 1124 2.048222 GAGCTGCACCTACACGCA 60.048 61.111 1.02 0.00 36.52 5.24
1302 1316 7.116736 ACACCAAGAAGAGGTAAAAAGAAAGA 58.883 34.615 0.00 0.00 37.23 2.52
1369 1389 2.270297 ATCCAAATGCGCCGAACTGC 62.270 55.000 4.18 0.00 0.00 4.40
1828 1861 2.358737 GCTCCAACGGTGGTCTGG 60.359 66.667 21.31 9.58 46.11 3.86
2021 2061 0.368227 CGAACAGAGCATCGAAGTGC 59.632 55.000 2.71 2.71 45.38 4.40
2049 2091 2.040884 CTACCCAGCCCCTGCCTA 60.041 66.667 0.00 0.00 38.69 3.93
2077 2122 2.617532 GCAAGAGGGAAGAACAGAGCAT 60.618 50.000 0.00 0.00 0.00 3.79
2078 2123 3.269178 CAAGAGGGAAGAACAGAGCATC 58.731 50.000 0.00 0.00 0.00 3.91
2107 2152 2.026356 TGCAGATTTAGGCACTAGGCAA 60.026 45.455 0.00 0.00 44.25 4.52
2194 2242 8.514136 TGTTGATTTATTTTGTAAGAAAGCGG 57.486 30.769 0.00 0.00 34.52 5.52
2195 2243 8.353684 TGTTGATTTATTTTGTAAGAAAGCGGA 58.646 29.630 0.00 0.00 34.52 5.54
2196 2244 8.850452 GTTGATTTATTTTGTAAGAAAGCGGAG 58.150 33.333 0.00 0.00 34.52 4.63
2241 2289 3.955471 TGTTCTCCTGAATCCATGAACC 58.045 45.455 0.00 0.00 34.63 3.62
2247 2295 3.059884 CCTGAATCCATGAACCGTATCG 58.940 50.000 0.00 0.00 0.00 2.92
2374 2424 6.808704 CGTAGAATCAAATGTTCTGAGACTGA 59.191 38.462 0.00 0.00 36.63 3.41
2375 2425 7.490725 CGTAGAATCAAATGTTCTGAGACTGAT 59.509 37.037 0.00 0.00 36.63 2.90
2477 2527 9.950496 ACTATTGTGAGAAAAGAAGATACACAT 57.050 29.630 0.00 0.00 36.82 3.21
2549 2599 6.169557 ACAACTAGTGGTTACAATGACAGA 57.830 37.500 0.00 0.00 36.23 3.41
2551 2601 5.801531 ACTAGTGGTTACAATGACAGACA 57.198 39.130 0.00 0.00 0.00 3.41
2570 2620 5.047021 CAGACACCAAAGTCCTAATCTGAGA 60.047 44.000 0.00 0.00 39.34 3.27
2739 2790 4.499037 AGTCGTGGCAAAAAGGATAAAC 57.501 40.909 0.00 0.00 0.00 2.01
2847 2898 7.656412 TGATGAAACTTTGCAAGCACTAATTA 58.344 30.769 0.00 0.00 0.00 1.40
2848 2899 8.306038 TGATGAAACTTTGCAAGCACTAATTAT 58.694 29.630 0.00 0.00 0.00 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.470567 GTGGAAGCGCGAGTGACG 61.471 66.667 12.10 0.00 45.66 4.35
21 22 3.112709 GGTGGAAGCGCGAGTGAC 61.113 66.667 12.10 0.00 0.00 3.67
22 23 3.611674 TGGTGGAAGCGCGAGTGA 61.612 61.111 12.10 0.00 36.92 3.41
23 24 3.414700 GTGGTGGAAGCGCGAGTG 61.415 66.667 12.10 0.00 36.92 3.51
28 29 4.947147 TGGTGGTGGTGGAAGCGC 62.947 66.667 0.00 0.00 45.65 5.92
29 30 2.978010 GTGGTGGTGGTGGAAGCG 60.978 66.667 0.00 0.00 36.92 4.68
30 31 2.597510 GGTGGTGGTGGTGGAAGC 60.598 66.667 0.00 0.00 0.00 3.86
31 32 1.528309 GTGGTGGTGGTGGTGGAAG 60.528 63.158 0.00 0.00 0.00 3.46
32 33 2.598467 GTGGTGGTGGTGGTGGAA 59.402 61.111 0.00 0.00 0.00 3.53
33 34 3.494254 GGTGGTGGTGGTGGTGGA 61.494 66.667 0.00 0.00 0.00 4.02
34 35 4.947147 CGGTGGTGGTGGTGGTGG 62.947 72.222 0.00 0.00 0.00 4.61
35 36 3.825160 CTCGGTGGTGGTGGTGGTG 62.825 68.421 0.00 0.00 0.00 4.17
36 37 3.556306 CTCGGTGGTGGTGGTGGT 61.556 66.667 0.00 0.00 0.00 4.16
37 38 3.530910 GACTCGGTGGTGGTGGTGG 62.531 68.421 0.00 0.00 0.00 4.61
38 39 2.030562 GACTCGGTGGTGGTGGTG 59.969 66.667 0.00 0.00 0.00 4.17
39 40 2.445085 TGACTCGGTGGTGGTGGT 60.445 61.111 0.00 0.00 0.00 4.16
40 41 2.030562 GTGACTCGGTGGTGGTGG 59.969 66.667 0.00 0.00 0.00 4.61
41 42 2.030562 GGTGACTCGGTGGTGGTG 59.969 66.667 0.00 0.00 0.00 4.17
42 43 3.239253 GGGTGACTCGGTGGTGGT 61.239 66.667 0.00 0.00 0.00 4.16
43 44 4.373116 CGGGTGACTCGGTGGTGG 62.373 72.222 0.00 0.00 0.00 4.61
44 45 3.569049 GACGGGTGACTCGGTGGTG 62.569 68.421 10.58 0.00 0.00 4.17
45 46 3.300765 GACGGGTGACTCGGTGGT 61.301 66.667 10.58 0.00 0.00 4.16
46 47 4.415332 CGACGGGTGACTCGGTGG 62.415 72.222 10.58 0.00 0.00 4.61
50 51 3.109612 CTAGGCGACGGGTGACTCG 62.110 68.421 1.98 1.98 0.00 4.18
51 52 2.772691 CCTAGGCGACGGGTGACTC 61.773 68.421 0.00 0.00 0.00 3.36
52 53 2.754658 CCTAGGCGACGGGTGACT 60.755 66.667 0.00 0.00 0.00 3.41
53 54 3.834799 CCCTAGGCGACGGGTGAC 61.835 72.222 2.05 0.00 35.65 3.67
63 64 3.043999 AATCCACACCGCCCTAGGC 62.044 63.158 2.05 0.00 46.75 3.93
64 65 1.153168 CAATCCACACCGCCCTAGG 60.153 63.158 0.06 0.06 37.30 3.02
65 66 0.251916 TTCAATCCACACCGCCCTAG 59.748 55.000 0.00 0.00 0.00 3.02
66 67 0.035820 GTTCAATCCACACCGCCCTA 60.036 55.000 0.00 0.00 0.00 3.53
67 68 1.303317 GTTCAATCCACACCGCCCT 60.303 57.895 0.00 0.00 0.00 5.19
68 69 2.686816 CGTTCAATCCACACCGCCC 61.687 63.158 0.00 0.00 0.00 6.13
69 70 2.867472 CGTTCAATCCACACCGCC 59.133 61.111 0.00 0.00 0.00 6.13
70 71 2.175811 GCGTTCAATCCACACCGC 59.824 61.111 0.00 0.00 0.00 5.68
71 72 1.787847 GAGCGTTCAATCCACACCG 59.212 57.895 0.00 0.00 0.00 4.94
72 73 0.949105 ACGAGCGTTCAATCCACACC 60.949 55.000 0.00 0.00 0.00 4.16
73 74 0.163788 CACGAGCGTTCAATCCACAC 59.836 55.000 0.00 0.00 0.00 3.82
74 75 0.948623 CCACGAGCGTTCAATCCACA 60.949 55.000 0.00 0.00 0.00 4.17
75 76 0.669318 TCCACGAGCGTTCAATCCAC 60.669 55.000 0.00 0.00 0.00 4.02
76 77 0.389817 CTCCACGAGCGTTCAATCCA 60.390 55.000 0.00 0.00 0.00 3.41
77 78 0.389948 ACTCCACGAGCGTTCAATCC 60.390 55.000 0.00 0.00 32.04 3.01
78 79 0.992802 GACTCCACGAGCGTTCAATC 59.007 55.000 0.00 0.00 32.04 2.67
79 80 0.317160 TGACTCCACGAGCGTTCAAT 59.683 50.000 0.00 0.00 32.04 2.57
80 81 0.103390 TTGACTCCACGAGCGTTCAA 59.897 50.000 0.00 4.35 32.04 2.69
81 82 0.318699 CTTGACTCCACGAGCGTTCA 60.319 55.000 0.00 0.00 32.04 3.18
82 83 0.318784 ACTTGACTCCACGAGCGTTC 60.319 55.000 0.00 0.00 32.04 3.95
83 84 0.318784 GACTTGACTCCACGAGCGTT 60.319 55.000 0.00 0.00 32.04 4.84
84 85 1.286260 GACTTGACTCCACGAGCGT 59.714 57.895 0.00 0.00 32.04 5.07
85 86 0.109086 ATGACTTGACTCCACGAGCG 60.109 55.000 0.00 0.00 32.04 5.03
86 87 1.996191 GAATGACTTGACTCCACGAGC 59.004 52.381 0.00 0.00 32.04 5.03
87 88 2.254459 CGAATGACTTGACTCCACGAG 58.746 52.381 0.00 0.00 35.52 4.18
88 89 1.611977 ACGAATGACTTGACTCCACGA 59.388 47.619 0.00 0.00 0.00 4.35
89 90 1.721389 CACGAATGACTTGACTCCACG 59.279 52.381 0.00 0.00 0.00 4.94
90 91 2.755650 ACACGAATGACTTGACTCCAC 58.244 47.619 0.00 0.00 0.00 4.02
91 92 3.130633 CAACACGAATGACTTGACTCCA 58.869 45.455 0.00 0.00 0.00 3.86
92 93 2.480419 CCAACACGAATGACTTGACTCC 59.520 50.000 0.00 0.00 0.00 3.85
93 94 3.390135 TCCAACACGAATGACTTGACTC 58.610 45.455 0.00 0.00 0.00 3.36
94 95 3.469008 TCCAACACGAATGACTTGACT 57.531 42.857 0.00 0.00 0.00 3.41
95 96 3.181530 CGATCCAACACGAATGACTTGAC 60.182 47.826 0.00 0.00 0.00 3.18
96 97 2.993220 CGATCCAACACGAATGACTTGA 59.007 45.455 0.00 0.00 0.00 3.02
97 98 2.993220 TCGATCCAACACGAATGACTTG 59.007 45.455 0.00 0.00 35.62 3.16
98 99 3.313012 TCGATCCAACACGAATGACTT 57.687 42.857 0.00 0.00 35.62 3.01
99 100 3.254060 CTTCGATCCAACACGAATGACT 58.746 45.455 0.00 0.00 45.07 3.41
100 101 2.348666 CCTTCGATCCAACACGAATGAC 59.651 50.000 0.00 0.00 45.07 3.06
101 102 2.616960 CCTTCGATCCAACACGAATGA 58.383 47.619 0.00 0.00 45.07 2.57
102 103 1.665679 CCCTTCGATCCAACACGAATG 59.334 52.381 0.00 0.00 45.07 2.67
103 104 1.406887 CCCCTTCGATCCAACACGAAT 60.407 52.381 0.00 0.00 45.07 3.34
104 105 0.036765 CCCCTTCGATCCAACACGAA 60.037 55.000 0.00 0.00 44.26 3.85
105 106 0.901114 TCCCCTTCGATCCAACACGA 60.901 55.000 0.00 0.00 36.75 4.35
106 107 0.460284 CTCCCCTTCGATCCAACACG 60.460 60.000 0.00 0.00 0.00 4.49
107 108 0.744771 GCTCCCCTTCGATCCAACAC 60.745 60.000 0.00 0.00 0.00 3.32
108 109 1.198094 TGCTCCCCTTCGATCCAACA 61.198 55.000 0.00 0.00 0.00 3.33
109 110 0.181350 ATGCTCCCCTTCGATCCAAC 59.819 55.000 0.00 0.00 0.00 3.77
110 111 0.469917 GATGCTCCCCTTCGATCCAA 59.530 55.000 0.00 0.00 0.00 3.53
111 112 0.690744 TGATGCTCCCCTTCGATCCA 60.691 55.000 0.00 0.00 0.00 3.41
112 113 0.689623 ATGATGCTCCCCTTCGATCC 59.310 55.000 0.00 0.00 0.00 3.36
113 114 2.149578 CAATGATGCTCCCCTTCGATC 58.850 52.381 0.00 0.00 0.00 3.69
114 115 1.202855 CCAATGATGCTCCCCTTCGAT 60.203 52.381 0.00 0.00 0.00 3.59
115 116 0.181114 CCAATGATGCTCCCCTTCGA 59.819 55.000 0.00 0.00 0.00 3.71
116 117 0.820891 CCCAATGATGCTCCCCTTCG 60.821 60.000 0.00 0.00 0.00 3.79
117 118 1.111715 GCCCAATGATGCTCCCCTTC 61.112 60.000 0.00 0.00 0.00 3.46
118 119 1.075748 GCCCAATGATGCTCCCCTT 60.076 57.895 0.00 0.00 0.00 3.95
119 120 2.605299 GCCCAATGATGCTCCCCT 59.395 61.111 0.00 0.00 0.00 4.79
120 121 2.522680 GGCCCAATGATGCTCCCC 60.523 66.667 0.00 0.00 0.00 4.81
121 122 2.908940 CGGCCCAATGATGCTCCC 60.909 66.667 0.00 0.00 0.00 4.30
122 123 2.908940 CCGGCCCAATGATGCTCC 60.909 66.667 0.00 0.00 0.00 4.70
123 124 3.599704 GCCGGCCCAATGATGCTC 61.600 66.667 18.11 0.00 0.00 4.26
126 127 2.203139 TACGCCGGCCCAATGATG 60.203 61.111 23.46 6.49 0.00 3.07
127 128 2.203153 GTACGCCGGCCCAATGAT 60.203 61.111 23.46 0.00 0.00 2.45
128 129 2.961893 AAGTACGCCGGCCCAATGA 61.962 57.895 23.46 0.00 0.00 2.57
129 130 2.437716 AAGTACGCCGGCCCAATG 60.438 61.111 23.46 9.08 0.00 2.82
130 131 2.437716 CAAGTACGCCGGCCCAAT 60.438 61.111 23.46 4.68 0.00 3.16
131 132 4.708386 CCAAGTACGCCGGCCCAA 62.708 66.667 23.46 2.80 0.00 4.12
135 136 2.365095 ATAGAGCCAAGTACGCCGGC 62.365 60.000 19.07 19.07 46.62 6.13
136 137 0.956633 TATAGAGCCAAGTACGCCGG 59.043 55.000 0.00 0.00 0.00 6.13
137 138 2.787601 TTATAGAGCCAAGTACGCCG 57.212 50.000 0.00 0.00 0.00 6.46
138 139 5.526111 TCAAATTTATAGAGCCAAGTACGCC 59.474 40.000 0.00 0.00 0.00 5.68
139 140 6.598753 TCAAATTTATAGAGCCAAGTACGC 57.401 37.500 0.00 0.00 0.00 4.42
140 141 8.365399 TGATCAAATTTATAGAGCCAAGTACG 57.635 34.615 0.00 0.00 0.00 3.67
168 169 9.482627 TTGTGTGAAAAGTCAAACTTTGTAAAT 57.517 25.926 5.88 0.00 46.78 1.40
169 170 8.873215 TTGTGTGAAAAGTCAAACTTTGTAAA 57.127 26.923 5.88 0.00 46.78 2.01
170 171 8.873215 TTTGTGTGAAAAGTCAAACTTTGTAA 57.127 26.923 5.88 0.00 46.78 2.41
171 172 8.873215 TTTTGTGTGAAAAGTCAAACTTTGTA 57.127 26.923 5.88 0.00 46.78 2.41
172 173 7.778470 TTTTGTGTGAAAAGTCAAACTTTGT 57.222 28.000 5.88 0.00 46.78 2.83
173 174 8.281893 ACATTTTGTGTGAAAAGTCAAACTTTG 58.718 29.630 5.88 0.00 42.61 2.77
174 175 8.376889 ACATTTTGTGTGAAAAGTCAAACTTT 57.623 26.923 0.00 0.00 44.02 2.66
175 176 7.961325 ACATTTTGTGTGAAAAGTCAAACTT 57.039 28.000 0.00 0.00 41.91 2.66
186 187 9.535878 TGCGTATAGATATACATTTTGTGTGAA 57.464 29.630 9.93 0.00 42.24 3.18
187 188 8.974408 GTGCGTATAGATATACATTTTGTGTGA 58.026 33.333 9.93 0.00 42.24 3.58
188 189 8.978539 AGTGCGTATAGATATACATTTTGTGTG 58.021 33.333 9.93 0.00 42.24 3.82
202 203 9.411801 CTGTTTCATATTGTAGTGCGTATAGAT 57.588 33.333 0.00 0.00 0.00 1.98
203 204 8.626526 TCTGTTTCATATTGTAGTGCGTATAGA 58.373 33.333 0.00 0.00 0.00 1.98
204 205 8.797266 TCTGTTTCATATTGTAGTGCGTATAG 57.203 34.615 0.00 0.00 0.00 1.31
205 206 9.244799 CTTCTGTTTCATATTGTAGTGCGTATA 57.755 33.333 0.00 0.00 0.00 1.47
206 207 7.224753 CCTTCTGTTTCATATTGTAGTGCGTAT 59.775 37.037 0.00 0.00 0.00 3.06
207 208 6.533723 CCTTCTGTTTCATATTGTAGTGCGTA 59.466 38.462 0.00 0.00 0.00 4.42
208 209 5.351465 CCTTCTGTTTCATATTGTAGTGCGT 59.649 40.000 0.00 0.00 0.00 5.24
209 210 5.580691 TCCTTCTGTTTCATATTGTAGTGCG 59.419 40.000 0.00 0.00 0.00 5.34
210 211 6.595716 ACTCCTTCTGTTTCATATTGTAGTGC 59.404 38.462 0.00 0.00 0.00 4.40
211 212 9.088512 GTACTCCTTCTGTTTCATATTGTAGTG 57.911 37.037 0.00 0.00 0.00 2.74
212 213 7.974501 CGTACTCCTTCTGTTTCATATTGTAGT 59.025 37.037 0.00 0.00 0.00 2.73
213 214 8.188799 TCGTACTCCTTCTGTTTCATATTGTAG 58.811 37.037 0.00 0.00 0.00 2.74
214 215 8.058667 TCGTACTCCTTCTGTTTCATATTGTA 57.941 34.615 0.00 0.00 0.00 2.41
215 216 6.931838 TCGTACTCCTTCTGTTTCATATTGT 58.068 36.000 0.00 0.00 0.00 2.71
216 217 6.477033 CCTCGTACTCCTTCTGTTTCATATTG 59.523 42.308 0.00 0.00 0.00 1.90
217 218 6.380274 TCCTCGTACTCCTTCTGTTTCATATT 59.620 38.462 0.00 0.00 0.00 1.28
218 219 5.892119 TCCTCGTACTCCTTCTGTTTCATAT 59.108 40.000 0.00 0.00 0.00 1.78
219 220 5.125097 GTCCTCGTACTCCTTCTGTTTCATA 59.875 44.000 0.00 0.00 0.00 2.15
220 221 4.082136 GTCCTCGTACTCCTTCTGTTTCAT 60.082 45.833 0.00 0.00 0.00 2.57
221 222 3.255149 GTCCTCGTACTCCTTCTGTTTCA 59.745 47.826 0.00 0.00 0.00 2.69
222 223 3.255149 TGTCCTCGTACTCCTTCTGTTTC 59.745 47.826 0.00 0.00 0.00 2.78
223 224 3.005578 GTGTCCTCGTACTCCTTCTGTTT 59.994 47.826 0.00 0.00 0.00 2.83
224 225 2.557490 GTGTCCTCGTACTCCTTCTGTT 59.443 50.000 0.00 0.00 0.00 3.16
225 226 2.161030 GTGTCCTCGTACTCCTTCTGT 58.839 52.381 0.00 0.00 0.00 3.41
226 227 2.160205 TGTGTCCTCGTACTCCTTCTG 58.840 52.381 0.00 0.00 0.00 3.02
227 228 2.557490 GTTGTGTCCTCGTACTCCTTCT 59.443 50.000 0.00 0.00 0.00 2.85
228 229 2.667724 CGTTGTGTCCTCGTACTCCTTC 60.668 54.545 0.00 0.00 0.00 3.46
229 230 1.268899 CGTTGTGTCCTCGTACTCCTT 59.731 52.381 0.00 0.00 0.00 3.36
230 231 0.879765 CGTTGTGTCCTCGTACTCCT 59.120 55.000 0.00 0.00 0.00 3.69
231 232 0.595095 ACGTTGTGTCCTCGTACTCC 59.405 55.000 0.00 0.00 36.05 3.85
232 233 2.481952 ACTACGTTGTGTCCTCGTACTC 59.518 50.000 0.73 0.00 38.69 2.59
233 234 2.498167 ACTACGTTGTGTCCTCGTACT 58.502 47.619 0.73 0.00 38.69 2.73
234 235 2.977405 ACTACGTTGTGTCCTCGTAC 57.023 50.000 0.73 0.00 38.69 3.67
235 236 3.304659 GGAAACTACGTTGTGTCCTCGTA 60.305 47.826 26.28 0.00 40.37 3.43
236 237 2.544486 GGAAACTACGTTGTGTCCTCGT 60.544 50.000 26.28 0.00 40.37 4.18
237 238 2.056577 GGAAACTACGTTGTGTCCTCG 58.943 52.381 26.28 0.00 40.37 4.63
238 239 3.102052 TGGAAACTACGTTGTGTCCTC 57.898 47.619 30.88 13.25 43.16 3.71
239 240 3.547054 TTGGAAACTACGTTGTGTCCT 57.453 42.857 30.88 3.81 43.16 3.85
240 241 4.823790 ATTTGGAAACTACGTTGTGTCC 57.176 40.909 26.67 26.67 43.08 4.02
241 242 5.454232 CACAATTTGGAAACTACGTTGTGTC 59.546 40.000 11.36 11.36 37.26 3.67
242 243 5.106078 ACACAATTTGGAAACTACGTTGTGT 60.106 36.000 13.34 13.34 43.40 3.72
243 244 5.336744 ACACAATTTGGAAACTACGTTGTG 58.663 37.500 2.75 12.23 42.27 3.33
244 245 5.570234 ACACAATTTGGAAACTACGTTGT 57.430 34.783 0.00 0.00 0.00 3.32
245 246 6.879188 AAACACAATTTGGAAACTACGTTG 57.121 33.333 0.00 0.00 0.00 4.10
246 247 7.485595 GTGTAAACACAATTTGGAAACTACGTT 59.514 33.333 8.35 0.00 45.75 3.99
247 248 6.968335 GTGTAAACACAATTTGGAAACTACGT 59.032 34.615 8.35 0.00 45.75 3.57
248 249 7.371338 GTGTAAACACAATTTGGAAACTACG 57.629 36.000 8.35 0.00 45.75 3.51
263 264 2.545106 CCGGGTGTACTTGTGTAAACAC 59.455 50.000 6.29 6.29 46.59 3.32
264 265 2.170187 ACCGGGTGTACTTGTGTAAACA 59.830 45.455 6.32 0.00 38.36 2.83
265 266 2.802247 GACCGGGTGTACTTGTGTAAAC 59.198 50.000 3.30 0.00 36.42 2.01
266 267 2.699846 AGACCGGGTGTACTTGTGTAAA 59.300 45.455 3.30 0.00 0.00 2.01
267 268 2.318908 AGACCGGGTGTACTTGTGTAA 58.681 47.619 3.30 0.00 0.00 2.41
268 269 1.999648 AGACCGGGTGTACTTGTGTA 58.000 50.000 3.30 0.00 0.00 2.90
269 270 1.125633 AAGACCGGGTGTACTTGTGT 58.874 50.000 3.30 0.00 0.00 3.72
270 271 2.249844 AAAGACCGGGTGTACTTGTG 57.750 50.000 3.30 0.00 0.00 3.33
271 272 3.286329 AAAAAGACCGGGTGTACTTGT 57.714 42.857 3.30 0.00 0.00 3.16
289 290 7.334921 CCCTTCCATGTCGTACTTATGTAAAAA 59.665 37.037 0.00 0.00 0.00 1.94
290 291 6.819649 CCCTTCCATGTCGTACTTATGTAAAA 59.180 38.462 0.00 0.00 0.00 1.52
291 292 6.070653 ACCCTTCCATGTCGTACTTATGTAAA 60.071 38.462 0.00 0.00 0.00 2.01
292 293 5.422970 ACCCTTCCATGTCGTACTTATGTAA 59.577 40.000 0.00 0.00 0.00 2.41
293 294 4.957954 ACCCTTCCATGTCGTACTTATGTA 59.042 41.667 0.00 0.00 0.00 2.29
294 295 3.773119 ACCCTTCCATGTCGTACTTATGT 59.227 43.478 0.00 0.00 0.00 2.29
295 296 4.402056 ACCCTTCCATGTCGTACTTATG 57.598 45.455 0.00 0.00 0.00 1.90
296 297 4.468510 TGAACCCTTCCATGTCGTACTTAT 59.531 41.667 0.00 0.00 0.00 1.73
297 298 3.833650 TGAACCCTTCCATGTCGTACTTA 59.166 43.478 0.00 0.00 0.00 2.24
298 299 2.635915 TGAACCCTTCCATGTCGTACTT 59.364 45.455 0.00 0.00 0.00 2.24
299 300 2.028385 GTGAACCCTTCCATGTCGTACT 60.028 50.000 0.00 0.00 0.00 2.73
300 301 2.028385 AGTGAACCCTTCCATGTCGTAC 60.028 50.000 0.00 0.00 0.00 3.67
301 302 2.232941 GAGTGAACCCTTCCATGTCGTA 59.767 50.000 0.00 0.00 0.00 3.43
302 303 1.002087 GAGTGAACCCTTCCATGTCGT 59.998 52.381 0.00 0.00 0.00 4.34
303 304 1.001974 TGAGTGAACCCTTCCATGTCG 59.998 52.381 0.00 0.00 0.00 4.35
304 305 2.859165 TGAGTGAACCCTTCCATGTC 57.141 50.000 0.00 0.00 0.00 3.06
305 306 3.814504 ATTGAGTGAACCCTTCCATGT 57.185 42.857 0.00 0.00 0.00 3.21
306 307 7.201821 GGTTAATATTGAGTGAACCCTTCCATG 60.202 40.741 5.97 0.00 34.67 3.66
307 308 6.833933 GGTTAATATTGAGTGAACCCTTCCAT 59.166 38.462 5.97 0.00 34.67 3.41
308 309 6.184789 GGTTAATATTGAGTGAACCCTTCCA 58.815 40.000 5.97 0.00 34.67 3.53
309 310 6.694877 GGTTAATATTGAGTGAACCCTTCC 57.305 41.667 5.97 0.00 34.67 3.46
327 328 9.320352 GCTTCTTTGACAAAAATTAAGGGTTAA 57.680 29.630 1.62 0.00 0.00 2.01
328 329 7.650104 CGCTTCTTTGACAAAAATTAAGGGTTA 59.350 33.333 1.62 0.00 0.00 2.85
329 330 6.478673 CGCTTCTTTGACAAAAATTAAGGGTT 59.521 34.615 1.62 0.00 0.00 4.11
330 331 5.983118 CGCTTCTTTGACAAAAATTAAGGGT 59.017 36.000 1.62 0.00 0.00 4.34
331 332 6.212955 TCGCTTCTTTGACAAAAATTAAGGG 58.787 36.000 15.48 15.48 31.15 3.95
332 333 7.567590 GCTTCGCTTCTTTGACAAAAATTAAGG 60.568 37.037 1.62 0.00 0.00 2.69
333 334 7.043458 TGCTTCGCTTCTTTGACAAAAATTAAG 60.043 33.333 1.62 5.19 0.00 1.85
334 335 6.754209 TGCTTCGCTTCTTTGACAAAAATTAA 59.246 30.769 1.62 0.00 0.00 1.40
335 336 6.269315 TGCTTCGCTTCTTTGACAAAAATTA 58.731 32.000 1.62 0.00 0.00 1.40
336 337 5.108517 TGCTTCGCTTCTTTGACAAAAATT 58.891 33.333 1.62 0.00 0.00 1.82
337 338 4.681744 TGCTTCGCTTCTTTGACAAAAAT 58.318 34.783 1.62 0.00 0.00 1.82
338 339 4.103365 TGCTTCGCTTCTTTGACAAAAA 57.897 36.364 1.62 0.00 0.00 1.94
339 340 3.773860 TGCTTCGCTTCTTTGACAAAA 57.226 38.095 1.62 0.00 0.00 2.44
340 341 3.434637 GTTGCTTCGCTTCTTTGACAAA 58.565 40.909 0.00 0.00 0.00 2.83
341 342 2.223479 GGTTGCTTCGCTTCTTTGACAA 60.223 45.455 0.00 0.00 0.00 3.18
342 343 1.333619 GGTTGCTTCGCTTCTTTGACA 59.666 47.619 0.00 0.00 0.00 3.58
343 344 1.604278 AGGTTGCTTCGCTTCTTTGAC 59.396 47.619 0.00 0.00 0.00 3.18
344 345 1.603802 CAGGTTGCTTCGCTTCTTTGA 59.396 47.619 0.00 0.00 0.00 2.69
345 346 1.334869 ACAGGTTGCTTCGCTTCTTTG 59.665 47.619 0.00 0.00 0.00 2.77
346 347 1.334869 CACAGGTTGCTTCGCTTCTTT 59.665 47.619 0.00 0.00 0.00 2.52
347 348 0.947244 CACAGGTTGCTTCGCTTCTT 59.053 50.000 0.00 0.00 0.00 2.52
348 349 0.886490 CCACAGGTTGCTTCGCTTCT 60.886 55.000 0.00 0.00 0.00 2.85
349 350 1.166531 ACCACAGGTTGCTTCGCTTC 61.167 55.000 0.00 0.00 27.29 3.86
350 351 0.751643 AACCACAGGTTGCTTCGCTT 60.752 50.000 0.00 0.00 45.07 4.68
351 352 1.152963 AACCACAGGTTGCTTCGCT 60.153 52.632 0.00 0.00 45.07 4.93
352 353 3.432186 AACCACAGGTTGCTTCGC 58.568 55.556 0.00 0.00 45.07 4.70
360 361 1.354368 CCTAACCATCCAACCACAGGT 59.646 52.381 0.00 0.00 37.65 4.00
361 362 1.633432 TCCTAACCATCCAACCACAGG 59.367 52.381 0.00 0.00 0.00 4.00
362 363 2.356125 CCTCCTAACCATCCAACCACAG 60.356 54.545 0.00 0.00 0.00 3.66
363 364 1.633432 CCTCCTAACCATCCAACCACA 59.367 52.381 0.00 0.00 0.00 4.17
364 365 1.913419 TCCTCCTAACCATCCAACCAC 59.087 52.381 0.00 0.00 0.00 4.16
365 366 1.913419 GTCCTCCTAACCATCCAACCA 59.087 52.381 0.00 0.00 0.00 3.67
366 367 1.913419 TGTCCTCCTAACCATCCAACC 59.087 52.381 0.00 0.00 0.00 3.77
367 368 2.572104 ACTGTCCTCCTAACCATCCAAC 59.428 50.000 0.00 0.00 0.00 3.77
368 369 2.571653 CACTGTCCTCCTAACCATCCAA 59.428 50.000 0.00 0.00 0.00 3.53
369 370 2.187958 CACTGTCCTCCTAACCATCCA 58.812 52.381 0.00 0.00 0.00 3.41
370 371 1.486726 CCACTGTCCTCCTAACCATCC 59.513 57.143 0.00 0.00 0.00 3.51
371 372 2.188817 ACCACTGTCCTCCTAACCATC 58.811 52.381 0.00 0.00 0.00 3.51
372 373 2.344093 ACCACTGTCCTCCTAACCAT 57.656 50.000 0.00 0.00 0.00 3.55
373 374 2.111255 AGTACCACTGTCCTCCTAACCA 59.889 50.000 0.00 0.00 0.00 3.67
374 375 2.817665 AGTACCACTGTCCTCCTAACC 58.182 52.381 0.00 0.00 0.00 2.85
375 376 3.195182 GGAAGTACCACTGTCCTCCTAAC 59.805 52.174 0.00 0.00 38.79 2.34
376 377 3.077088 AGGAAGTACCACTGTCCTCCTAA 59.923 47.826 0.00 0.00 42.04 2.69
377 378 2.653366 AGGAAGTACCACTGTCCTCCTA 59.347 50.000 0.00 0.00 42.04 2.94
378 379 1.433592 AGGAAGTACCACTGTCCTCCT 59.566 52.381 0.00 0.00 42.04 3.69
379 380 1.939980 AGGAAGTACCACTGTCCTCC 58.060 55.000 0.00 0.00 42.04 4.30
380 381 3.695556 GACTAGGAAGTACCACTGTCCTC 59.304 52.174 11.06 0.00 42.04 3.71
381 382 3.563915 GGACTAGGAAGTACCACTGTCCT 60.564 52.174 15.38 11.92 43.78 3.85
382 383 2.759535 GGACTAGGAAGTACCACTGTCC 59.240 54.545 0.00 0.00 42.33 4.02
390 391 1.472188 AGTGCGGGACTAGGAAGTAC 58.528 55.000 0.00 0.00 35.56 2.73
391 392 1.822990 CAAGTGCGGGACTAGGAAGTA 59.177 52.381 1.54 0.00 35.56 2.24
392 393 0.608640 CAAGTGCGGGACTAGGAAGT 59.391 55.000 1.54 0.00 39.21 3.01
393 394 0.895530 TCAAGTGCGGGACTAGGAAG 59.104 55.000 1.54 0.00 33.09 3.46
394 395 0.606604 GTCAAGTGCGGGACTAGGAA 59.393 55.000 1.54 0.00 33.09 3.36
395 396 0.541063 TGTCAAGTGCGGGACTAGGA 60.541 55.000 1.54 1.11 33.09 2.94
396 397 0.537188 ATGTCAAGTGCGGGACTAGG 59.463 55.000 1.54 0.00 33.09 3.02
397 398 2.002586 CAATGTCAAGTGCGGGACTAG 58.997 52.381 1.54 0.00 33.09 2.57
398 399 1.338674 CCAATGTCAAGTGCGGGACTA 60.339 52.381 1.54 0.00 33.09 2.59
399 400 0.606401 CCAATGTCAAGTGCGGGACT 60.606 55.000 0.00 0.00 35.94 3.85
400 401 0.889186 ACCAATGTCAAGTGCGGGAC 60.889 55.000 0.00 0.00 34.63 4.46
401 402 0.888736 CACCAATGTCAAGTGCGGGA 60.889 55.000 0.00 0.00 0.00 5.14
402 403 1.580942 CACCAATGTCAAGTGCGGG 59.419 57.895 0.00 0.00 0.00 6.13
403 404 1.081242 GCACCAATGTCAAGTGCGG 60.081 57.895 9.42 0.00 46.43 5.69
404 405 4.539152 GCACCAATGTCAAGTGCG 57.461 55.556 9.42 0.00 46.43 5.34
406 407 1.948834 TGTGAGCACCAATGTCAAGTG 59.051 47.619 0.00 0.00 34.58 3.16
407 408 2.346766 TGTGAGCACCAATGTCAAGT 57.653 45.000 0.00 0.00 0.00 3.16
408 409 3.928727 AATGTGAGCACCAATGTCAAG 57.071 42.857 0.00 0.00 0.00 3.02
409 410 5.981088 AATAATGTGAGCACCAATGTCAA 57.019 34.783 0.00 0.00 0.00 3.18
410 411 5.711506 AGAAATAATGTGAGCACCAATGTCA 59.288 36.000 0.00 0.00 0.00 3.58
411 412 6.032094 CAGAAATAATGTGAGCACCAATGTC 58.968 40.000 0.00 0.00 0.00 3.06
412 413 5.711506 TCAGAAATAATGTGAGCACCAATGT 59.288 36.000 0.00 0.00 0.00 2.71
413 414 6.198650 TCAGAAATAATGTGAGCACCAATG 57.801 37.500 0.00 0.00 0.00 2.82
431 432 8.301002 CACCGGAAACCTAAAATAAATTCAGAA 58.699 33.333 9.46 0.00 0.00 3.02
432 433 7.666388 TCACCGGAAACCTAAAATAAATTCAGA 59.334 33.333 9.46 0.00 0.00 3.27
436 437 8.129496 ACATCACCGGAAACCTAAAATAAATT 57.871 30.769 9.46 0.00 0.00 1.82
452 453 0.790207 CACTGAACGAACATCACCGG 59.210 55.000 0.00 0.00 0.00 5.28
453 454 0.790207 CCACTGAACGAACATCACCG 59.210 55.000 0.00 0.00 0.00 4.94
455 456 2.069273 CTCCCACTGAACGAACATCAC 58.931 52.381 0.00 0.00 0.00 3.06
456 457 1.001974 CCTCCCACTGAACGAACATCA 59.998 52.381 0.00 0.00 0.00 3.07
476 477 2.098680 CCTCGCAGTCGACGTCTC 59.901 66.667 14.70 6.75 40.21 3.36
492 493 1.883084 CGAAGTCACCATAGGCGCC 60.883 63.158 21.89 21.89 0.00 6.53
493 494 0.101759 TACGAAGTCACCATAGGCGC 59.898 55.000 0.00 0.00 43.93 6.53
494 495 2.572191 TTACGAAGTCACCATAGGCG 57.428 50.000 0.00 0.00 43.93 5.52
495 496 5.006746 CAGATTTTACGAAGTCACCATAGGC 59.993 44.000 0.00 0.00 43.93 3.93
499 506 8.830580 CATATTCAGATTTTACGAAGTCACCAT 58.169 33.333 0.00 0.00 43.93 3.55
510 517 6.801862 GCCGGCATAACATATTCAGATTTTAC 59.198 38.462 24.80 0.00 0.00 2.01
519 526 3.403038 ACTGAGCCGGCATAACATATTC 58.597 45.455 31.54 14.56 0.00 1.75
522 529 2.035961 GAGACTGAGCCGGCATAACATA 59.964 50.000 31.54 5.14 0.00 2.29
536 543 1.202891 TGAACACCTCCGAGAGACTGA 60.203 52.381 0.00 0.00 0.00 3.41
537 544 1.248486 TGAACACCTCCGAGAGACTG 58.752 55.000 0.00 1.36 0.00 3.51
538 545 2.223803 ATGAACACCTCCGAGAGACT 57.776 50.000 0.00 0.00 0.00 3.24
539 546 2.359531 CCTATGAACACCTCCGAGAGAC 59.640 54.545 0.00 0.00 0.00 3.36
540 547 2.025226 ACCTATGAACACCTCCGAGAGA 60.025 50.000 0.00 0.00 0.00 3.10
541 548 2.099921 CACCTATGAACACCTCCGAGAG 59.900 54.545 0.00 0.00 0.00 3.20
542 549 2.100197 CACCTATGAACACCTCCGAGA 58.900 52.381 0.00 0.00 0.00 4.04
543 550 1.825474 ACACCTATGAACACCTCCGAG 59.175 52.381 0.00 0.00 0.00 4.63
544 551 1.933021 ACACCTATGAACACCTCCGA 58.067 50.000 0.00 0.00 0.00 4.55
545 552 2.100916 CCTACACCTATGAACACCTCCG 59.899 54.545 0.00 0.00 0.00 4.63
546 553 3.371965 TCCTACACCTATGAACACCTCC 58.628 50.000 0.00 0.00 0.00 4.30
549 556 4.080526 ACCAATCCTACACCTATGAACACC 60.081 45.833 0.00 0.00 0.00 4.16
553 560 4.534500 ACACACCAATCCTACACCTATGAA 59.466 41.667 0.00 0.00 0.00 2.57
560 567 3.472652 TGAACACACACCAATCCTACAC 58.527 45.455 0.00 0.00 0.00 2.90
561 568 3.847671 TGAACACACACCAATCCTACA 57.152 42.857 0.00 0.00 0.00 2.74
562 569 6.170506 TCTTATGAACACACACCAATCCTAC 58.829 40.000 0.00 0.00 0.00 3.18
569 576 5.469760 CACTCATTCTTATGAACACACACCA 59.530 40.000 0.00 0.00 40.17 4.17
570 577 5.470098 ACACTCATTCTTATGAACACACACC 59.530 40.000 0.00 0.00 40.17 4.16
572 579 7.148423 GCATACACTCATTCTTATGAACACACA 60.148 37.037 0.00 0.00 40.17 3.72
576 583 6.476706 CGAGCATACACTCATTCTTATGAACA 59.523 38.462 0.00 0.00 40.17 3.18
577 584 6.477033 ACGAGCATACACTCATTCTTATGAAC 59.523 38.462 0.00 0.00 40.17 3.18
579 586 6.149129 ACGAGCATACACTCATTCTTATGA 57.851 37.500 0.00 0.00 38.45 2.15
583 590 7.661968 ACATATACGAGCATACACTCATTCTT 58.338 34.615 0.00 0.00 36.42 2.52
584 591 7.220741 ACATATACGAGCATACACTCATTCT 57.779 36.000 0.00 0.00 36.42 2.40
585 592 8.965986 TTACATATACGAGCATACACTCATTC 57.034 34.615 0.00 0.00 36.42 2.67
586 593 7.542477 GCTTACATATACGAGCATACACTCATT 59.458 37.037 0.00 0.00 36.42 2.57
587 594 7.030165 GCTTACATATACGAGCATACACTCAT 58.970 38.462 0.00 0.00 36.42 2.90
589 596 5.508573 CGCTTACATATACGAGCATACACTC 59.491 44.000 0.00 0.00 34.90 3.51
590 597 5.180680 TCGCTTACATATACGAGCATACACT 59.819 40.000 0.00 0.00 34.90 3.55
591 598 5.283247 GTCGCTTACATATACGAGCATACAC 59.717 44.000 0.00 0.00 34.83 2.90
592 599 5.180680 AGTCGCTTACATATACGAGCATACA 59.819 40.000 0.00 0.00 34.83 2.29
593 600 5.629097 AGTCGCTTACATATACGAGCATAC 58.371 41.667 0.00 0.00 34.83 2.39
600 607 7.950108 ATAATCGAAGTCGCTTACATATACG 57.050 36.000 0.00 0.00 39.60 3.06
641 648 9.665719 ATGGCTTTTACTTTTTCTTTTCTTTGA 57.334 25.926 0.00 0.00 0.00 2.69
642 649 9.920826 GATGGCTTTTACTTTTTCTTTTCTTTG 57.079 29.630 0.00 0.00 0.00 2.77
643 650 9.109393 GGATGGCTTTTACTTTTTCTTTTCTTT 57.891 29.630 0.00 0.00 0.00 2.52
644 651 8.264347 TGGATGGCTTTTACTTTTTCTTTTCTT 58.736 29.630 0.00 0.00 0.00 2.52
645 652 7.791029 TGGATGGCTTTTACTTTTTCTTTTCT 58.209 30.769 0.00 0.00 0.00 2.52
646 653 8.607441 ATGGATGGCTTTTACTTTTTCTTTTC 57.393 30.769 0.00 0.00 0.00 2.29
675 684 6.389906 GTGTATGCCCAAATATTTAGATGGC 58.610 40.000 17.04 17.04 37.90 4.40
704 713 6.879993 TGCCCGTGAATTAAACACTTTCTATA 59.120 34.615 12.14 0.00 36.29 1.31
799 811 3.541242 TGTTTGACTGGATGGGGATTT 57.459 42.857 0.00 0.00 0.00 2.17
839 851 2.969628 ATAGAGGCGGAGTTCAAGTG 57.030 50.000 0.00 0.00 0.00 3.16
890 902 1.079438 GGAGAGGAGGTGGTGGACT 59.921 63.158 0.00 0.00 0.00 3.85
891 903 1.079438 AGGAGAGGAGGTGGTGGAC 59.921 63.158 0.00 0.00 0.00 4.02
892 904 1.079256 CAGGAGAGGAGGTGGTGGA 59.921 63.158 0.00 0.00 0.00 4.02
935 949 0.610174 AGGAAGCGAGCAAGTGATCA 59.390 50.000 0.00 0.00 0.00 2.92
944 958 0.461163 GGAGAAGGAAGGAAGCGAGC 60.461 60.000 0.00 0.00 0.00 5.03
970 984 1.790623 CACGGAAGAACACGTTCGATT 59.209 47.619 4.35 0.00 43.97 3.34
1233 1247 3.847602 CCGCTGAGGGAGCTGGAG 61.848 72.222 0.00 0.00 46.64 3.86
1302 1316 2.887152 GAGCATTTGAGTTGAGTTGGGT 59.113 45.455 0.00 0.00 0.00 4.51
1369 1389 2.589014 GAAGCGCCAAGAATTCAACAG 58.411 47.619 2.29 0.00 0.00 3.16
1923 1956 3.790437 CAGTCCATGCTCGGGGCT 61.790 66.667 0.00 0.00 42.24 5.19
1980 2013 3.675698 GTCGTCCTCACATGAAGAAGTTC 59.324 47.826 0.00 0.00 0.00 3.01
2021 2061 1.812571 GGCTGGGTAGTGTCACAATTG 59.187 52.381 3.24 3.24 0.00 2.32
2026 2066 1.918800 AGGGGCTGGGTAGTGTCAC 60.919 63.158 0.00 0.00 0.00 3.67
2049 2091 1.673767 TCTTCCCTCTTGCCAAGGAT 58.326 50.000 4.30 0.00 35.83 3.24
2057 2099 2.847327 TGCTCTGTTCTTCCCTCTTG 57.153 50.000 0.00 0.00 0.00 3.02
2077 2122 4.397420 TGCCTAAATCTGCACTTTGAAGA 58.603 39.130 0.00 0.00 31.31 2.87
2078 2123 4.771590 TGCCTAAATCTGCACTTTGAAG 57.228 40.909 0.76 0.00 31.31 3.02
2241 2289 2.649331 AAGGACAGTTCCACGATACG 57.351 50.000 0.00 0.00 45.72 3.06
2247 2295 2.557056 GGGCTTTAAAGGACAGTTCCAC 59.443 50.000 16.78 0.00 45.72 4.02
2315 2364 6.479884 AGTTCTTGACAAAAGGAGCAGATAT 58.520 36.000 0.00 0.00 0.00 1.63
2360 2410 7.543868 CGTTTCTTCTTATCAGTCTCAGAACAT 59.456 37.037 0.00 0.00 0.00 2.71
2374 2424 4.385825 TGTGCTCCAACGTTTCTTCTTAT 58.614 39.130 0.00 0.00 0.00 1.73
2375 2425 3.799366 TGTGCTCCAACGTTTCTTCTTA 58.201 40.909 0.00 0.00 0.00 2.10
2477 2527 6.068010 TGCTTCTTTATTGAGACCTCCAAAA 58.932 36.000 0.00 0.00 0.00 2.44
2510 2560 7.308891 CCACTAGTTGTTGTGGTAATGCATTTA 60.309 37.037 18.75 1.83 46.18 1.40
2549 2599 5.394663 CGATCTCAGATTAGGACTTTGGTGT 60.395 44.000 0.00 0.00 0.00 4.16
2551 2601 4.956700 TCGATCTCAGATTAGGACTTTGGT 59.043 41.667 0.00 0.00 0.00 3.67
2689 2740 8.561212 CACAAATGTGTTTCCATGATGAAAAAT 58.439 29.630 5.38 0.00 40.96 1.82
2722 2773 4.021981 AGCTGAGTTTATCCTTTTTGCCAC 60.022 41.667 0.00 0.00 0.00 5.01
2739 2790 1.475682 GAAGCATTTTGGGGAGCTGAG 59.524 52.381 0.00 0.00 37.41 3.35
2792 2843 3.006110 ACATTTGTGGAAGTCATGGCAAG 59.994 43.478 0.00 0.00 0.00 4.01
2793 2844 2.964464 ACATTTGTGGAAGTCATGGCAA 59.036 40.909 0.00 0.00 0.00 4.52
2799 2850 3.181435 TGGGATCACATTTGTGGAAGTCA 60.181 43.478 10.60 1.88 45.65 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.