Multiple sequence alignment - TraesCS2D01G167500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G167500 chr2D 100.000 4696 0 0 1 4696 111324258 111319563 0.000000e+00 8672.0
1 TraesCS2D01G167500 chr2D 84.252 127 14 3 4487 4608 594147604 594147729 8.250000e-23 119.0
2 TraesCS2D01G167500 chr2A 88.822 1664 125 39 2854 4483 111411367 111409731 0.000000e+00 1986.0
3 TraesCS2D01G167500 chr2A 89.904 1040 63 24 752 1768 111413272 111412252 0.000000e+00 1301.0
4 TraesCS2D01G167500 chr2A 92.954 738 29 4 1 720 111414003 111413271 0.000000e+00 1053.0
5 TraesCS2D01G167500 chr2A 91.011 356 29 2 2328 2683 111411770 111411418 1.180000e-130 477.0
6 TraesCS2D01G167500 chr2A 89.238 223 20 3 1803 2025 111412092 111411874 4.630000e-70 276.0
7 TraesCS2D01G167500 chr2A 90.123 162 11 1 4482 4638 111409667 111409506 6.160000e-49 206.0
8 TraesCS2D01G167500 chr2A 86.029 136 12 3 4482 4611 111409525 111409391 6.340000e-29 139.0
9 TraesCS2D01G167500 chr2A 92.683 41 1 2 4598 4638 111409686 111409648 1.830000e-04 58.4
10 TraesCS2D01G167500 chr2B 89.948 1154 69 22 3046 4161 161407192 161406048 0.000000e+00 1445.0
11 TraesCS2D01G167500 chr2B 87.580 942 67 31 787 1702 161408914 161407997 0.000000e+00 1046.0
12 TraesCS2D01G167500 chr2B 91.184 794 33 15 1 786 161409712 161408948 0.000000e+00 1044.0
13 TraesCS2D01G167500 chr2B 90.278 432 29 5 2328 2747 161407792 161407362 1.910000e-153 553.0
14 TraesCS2D01G167500 chr2B 98.276 116 2 0 2745 2860 43851090 43851205 2.220000e-48 204.0
15 TraesCS2D01G167500 chr4D 99.138 116 1 0 2742 2857 16450341 16450226 4.760000e-50 209.0
16 TraesCS2D01G167500 chr4D 92.391 92 4 3 2231 2321 450203792 450203703 1.370000e-25 128.0
17 TraesCS2D01G167500 chr4D 92.045 88 4 3 2232 2318 450203706 450203791 2.300000e-23 121.0
18 TraesCS2D01G167500 chr4D 90.110 91 6 3 2232 2321 179860426 179860338 1.070000e-21 115.0
19 TraesCS2D01G167500 chr7D 100.000 110 0 0 2745 2854 382742644 382742535 2.220000e-48 204.0
20 TraesCS2D01G167500 chr7D 92.857 84 4 2 2232 2315 119897077 119896996 2.300000e-23 121.0
21 TraesCS2D01G167500 chr4B 99.115 113 1 0 2744 2856 242910415 242910303 2.220000e-48 204.0
22 TraesCS2D01G167500 chr4B 97.414 116 3 0 2745 2860 452854965 452855080 1.030000e-46 198.0
23 TraesCS2D01G167500 chr4B 91.209 91 5 3 2229 2318 322674028 322674116 2.300000e-23 121.0
24 TraesCS2D01G167500 chr6B 97.414 116 3 0 2745 2860 458104635 458104520 1.030000e-46 198.0
25 TraesCS2D01G167500 chr3B 97.436 117 2 1 2741 2857 189150274 189150389 1.030000e-46 198.0
26 TraesCS2D01G167500 chr7B 96.610 118 4 0 2743 2860 573744124 573744007 3.710000e-46 196.0
27 TraesCS2D01G167500 chr7A 95.868 121 4 1 2736 2856 724154855 724154974 1.330000e-45 195.0
28 TraesCS2D01G167500 chr4A 91.304 92 5 3 2231 2321 16469322 16469411 6.380000e-24 122.0
29 TraesCS2D01G167500 chr5B 89.796 98 5 5 2223 2319 706306872 706306965 2.300000e-23 121.0
30 TraesCS2D01G167500 chr3D 90.323 93 6 3 2227 2318 556145701 556145791 8.250000e-23 119.0
31 TraesCS2D01G167500 chr1B 90.323 93 5 4 2227 2318 493871876 493871965 8.250000e-23 119.0
32 TraesCS2D01G167500 chr5D 81.102 127 17 4 4491 4611 344517248 344517373 1.390000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G167500 chr2D 111319563 111324258 4695 True 8672.00 8672 100.0000 1 4696 1 chr2D.!!$R1 4695
1 TraesCS2D01G167500 chr2A 111409391 111414003 4612 True 687.05 1986 90.0955 1 4638 8 chr2A.!!$R1 4637
2 TraesCS2D01G167500 chr2B 161406048 161409712 3664 True 1022.00 1445 89.7475 1 4161 4 chr2B.!!$R1 4160

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
523 534 1.844497 AGGGCATTGTAGGGTAGAACC 59.156 52.381 0.0 0.0 37.6 3.62 F
1045 1107 1.006758 CCCTCCTCCACACCTACTACA 59.993 57.143 0.0 0.0 0.0 2.74 F
2759 3017 0.245539 TTTGCTACTCCCTCCGTTCG 59.754 55.000 0.0 0.0 0.0 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1406 1492 0.392193 CAGCAAGCTCCTCCAACGAT 60.392 55.0 0.00 0.00 0.00 3.73 R
2834 3092 0.038744 AGTACTCCCTCCGTTCGGAA 59.961 55.0 14.79 0.04 33.41 4.30 R
4516 4888 0.317020 GACGCTTGTGCACTGTTTCC 60.317 55.0 19.41 0.00 39.64 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 5.665812 AGCTATCATGGTAAACTCCCACTTA 59.334 40.000 0.00 0.00 34.07 2.24
76 77 5.992217 GCTATCATGGTAAACTCCCACTTAG 59.008 44.000 0.00 0.00 34.07 2.18
132 133 2.411935 CGCATCGCATTGCCTAATACAG 60.412 50.000 2.41 0.00 39.52 2.74
231 232 2.280797 GAAGCACGGTGGAGCACA 60.281 61.111 10.60 0.00 35.86 4.57
232 233 1.891919 GAAGCACGGTGGAGCACAA 60.892 57.895 10.60 0.00 35.86 3.33
244 245 5.443252 GTGGAGCACAAGACAGCATTGTC 62.443 52.174 0.00 0.00 42.72 3.18
250 251 3.474806 GACAGCATTGTCGACGGG 58.525 61.111 11.62 3.78 43.84 5.28
301 302 4.271816 CCGCCGTCCCAGATCGAG 62.272 72.222 0.00 0.00 0.00 4.04
337 338 2.465055 AAAGAGCCCACACCTACGCC 62.465 60.000 0.00 0.00 0.00 5.68
497 508 3.711190 TGGCCTATGAGTTATGCAGAAGA 59.289 43.478 3.32 0.00 0.00 2.87
498 509 4.164030 TGGCCTATGAGTTATGCAGAAGAA 59.836 41.667 3.32 0.00 0.00 2.52
499 510 4.754114 GGCCTATGAGTTATGCAGAAGAAG 59.246 45.833 0.00 0.00 0.00 2.85
523 534 1.844497 AGGGCATTGTAGGGTAGAACC 59.156 52.381 0.00 0.00 37.60 3.62
606 630 9.701098 AGCATTTACTGGCAATGAATAAATATG 57.299 29.630 1.16 0.00 34.05 1.78
611 635 9.860650 TTACTGGCAATGAATAAATATGGTACT 57.139 29.630 0.00 0.00 0.00 2.73
730 757 9.683069 CTGTAATTATTTGCTTTCAGAAAGTGT 57.317 29.630 21.61 9.71 40.64 3.55
736 763 6.862944 TTTGCTTTCAGAAAGTGTTTAACG 57.137 33.333 21.61 0.00 40.64 3.18
803 863 7.754924 AGATGGATTATTTGTGTTTTAGCAACG 59.245 33.333 0.00 0.00 0.00 4.10
831 891 4.989168 AGTGTCACTGACGAAAAAGATACC 59.011 41.667 4.21 0.00 34.95 2.73
845 907 2.869503 GATACCCCACCGGCAGTGTG 62.870 65.000 0.00 0.00 45.74 3.82
988 1050 3.854669 CCTAGACCTGCGCCCCAG 61.855 72.222 4.18 0.00 41.41 4.45
1045 1107 1.006758 CCCTCCTCCACACCTACTACA 59.993 57.143 0.00 0.00 0.00 2.74
1046 1108 2.100989 CCTCCTCCACACCTACTACAC 58.899 57.143 0.00 0.00 0.00 2.90
1047 1109 2.291670 CCTCCTCCACACCTACTACACT 60.292 54.545 0.00 0.00 0.00 3.55
1050 1112 2.163815 CCTCCACACCTACTACACTTCG 59.836 54.545 0.00 0.00 0.00 3.79
1059 1121 3.338126 CTACACTTCGTCCGCCGCT 62.338 63.158 0.00 0.00 36.19 5.52
1291 1375 5.613795 GCGCATGGATTTGCAATTATGATTG 60.614 40.000 0.30 5.86 42.91 2.67
1293 1377 5.334569 GCATGGATTTGCAATTATGATTGGC 60.335 40.000 11.75 5.31 42.35 4.52
1294 1378 4.370049 TGGATTTGCAATTATGATTGGCG 58.630 39.130 11.75 0.00 42.35 5.69
1295 1379 4.141981 TGGATTTGCAATTATGATTGGCGT 60.142 37.500 11.75 0.00 42.35 5.68
1296 1380 4.445385 GGATTTGCAATTATGATTGGCGTC 59.555 41.667 11.75 4.91 42.35 5.19
1297 1381 4.717233 TTTGCAATTATGATTGGCGTCT 57.283 36.364 11.75 0.00 42.35 4.18
1298 1382 3.969117 TGCAATTATGATTGGCGTCTC 57.031 42.857 11.75 0.00 42.35 3.36
1299 1383 3.544684 TGCAATTATGATTGGCGTCTCT 58.455 40.909 11.75 0.00 42.35 3.10
1300 1384 3.313249 TGCAATTATGATTGGCGTCTCTG 59.687 43.478 11.75 0.00 42.35 3.35
1337 1423 2.927028 TGGGATGCTGATGATCAGTTG 58.073 47.619 22.23 0.07 45.94 3.16
1358 1444 4.272489 TGACCTGCCAAATCCTTTGATAG 58.728 43.478 1.28 0.23 43.26 2.08
1367 1453 4.439253 AATCCTTTGATAGTACTGGGCC 57.561 45.455 5.39 0.00 0.00 5.80
1406 1492 6.662865 TTGGGAATTTGTTGCTAGATTTGA 57.337 33.333 0.00 0.00 0.00 2.69
1510 1599 2.111384 TCCTTGTGAGATGGGTAGAGC 58.889 52.381 0.00 0.00 0.00 4.09
1534 1623 6.073222 GCGGTCTTAGAATTTTCTCTGTGAAA 60.073 38.462 1.06 1.06 42.33 2.69
1710 1799 5.000012 TGCGTTCCACACATTAACTTTTT 58.000 34.783 0.00 0.00 0.00 1.94
1747 1837 5.334802 CCTTGCTTACAATTCACACGATTCA 60.335 40.000 0.00 0.00 34.61 2.57
1751 1841 5.107104 GCTTACAATTCACACGATTCAGACA 60.107 40.000 0.00 0.00 0.00 3.41
1779 1912 6.320494 TGTTGTTTGTTAATTCATACGCCT 57.680 33.333 0.00 0.00 0.00 5.52
1795 1928 8.229253 TCATACGCCTTTACTATTCAGACTTA 57.771 34.615 0.00 0.00 0.00 2.24
1796 1929 8.689061 TCATACGCCTTTACTATTCAGACTTAA 58.311 33.333 0.00 0.00 0.00 1.85
1797 1930 8.969267 CATACGCCTTTACTATTCAGACTTAAG 58.031 37.037 0.00 0.00 0.00 1.85
1798 1931 6.932947 ACGCCTTTACTATTCAGACTTAAGT 58.067 36.000 8.13 8.13 0.00 2.24
1800 1933 8.526147 ACGCCTTTACTATTCAGACTTAAGTAA 58.474 33.333 8.42 0.00 32.36 2.24
1801 1934 9.362539 CGCCTTTACTATTCAGACTTAAGTAAA 57.637 33.333 8.42 4.17 39.22 2.01
1812 2027 9.918630 TTCAGACTTAAGTAAATAGTAAGCGTT 57.081 29.630 8.42 0.00 0.00 4.84
1833 2048 6.635239 GCGTTGTGTTATTGAGTAAAATGTGT 59.365 34.615 0.00 0.00 0.00 3.72
1836 2051 8.742188 GTTGTGTTATTGAGTAAAATGTGTGTG 58.258 33.333 0.00 0.00 0.00 3.82
1879 2094 3.924144 TGTGGGCATATGCTTGTTTTTC 58.076 40.909 26.12 7.64 41.70 2.29
1898 2113 6.847956 TTTTCAATGAATTCTGTTTGCCAG 57.152 33.333 7.05 0.00 42.97 4.85
1926 2141 0.735978 CTTCACACATAGGCGCACGA 60.736 55.000 10.83 0.00 0.00 4.35
2009 2224 5.534278 TGCTGTGGATTCAGTCATAAAACAA 59.466 36.000 0.00 0.00 37.70 2.83
2020 2235 5.752472 CAGTCATAAAACAACAATTGCACCA 59.248 36.000 5.05 0.00 0.00 4.17
2022 2237 6.424509 AGTCATAAAACAACAATTGCACCATG 59.575 34.615 5.05 0.09 0.00 3.66
2023 2238 6.202570 GTCATAAAACAACAATTGCACCATGT 59.797 34.615 5.05 0.72 0.00 3.21
2024 2239 7.383572 GTCATAAAACAACAATTGCACCATGTA 59.616 33.333 5.05 0.00 0.00 2.29
2025 2240 5.982465 AAAACAACAATTGCACCATGTAC 57.018 34.783 5.05 0.00 0.00 2.90
2026 2241 4.935352 AACAACAATTGCACCATGTACT 57.065 36.364 5.05 0.00 0.00 2.73
2027 2242 4.241590 ACAACAATTGCACCATGTACTG 57.758 40.909 5.05 0.00 0.00 2.74
2043 2258 8.224389 CCATGTACTGGTGATATCATTTTTCA 57.776 34.615 9.02 5.48 40.49 2.69
2044 2259 8.853126 CCATGTACTGGTGATATCATTTTTCAT 58.147 33.333 9.02 7.39 40.49 2.57
2045 2260 9.673454 CATGTACTGGTGATATCATTTTTCATG 57.327 33.333 9.02 14.36 0.00 3.07
2046 2261 7.706159 TGTACTGGTGATATCATTTTTCATGC 58.294 34.615 9.02 0.00 0.00 4.06
2047 2262 6.778834 ACTGGTGATATCATTTTTCATGCA 57.221 33.333 9.02 0.00 0.00 3.96
2048 2263 6.802608 ACTGGTGATATCATTTTTCATGCAG 58.197 36.000 9.02 1.92 0.00 4.41
2049 2264 6.151663 TGGTGATATCATTTTTCATGCAGG 57.848 37.500 9.02 0.00 0.00 4.85
2050 2265 5.892686 TGGTGATATCATTTTTCATGCAGGA 59.107 36.000 9.02 0.00 0.00 3.86
2051 2266 6.551975 TGGTGATATCATTTTTCATGCAGGAT 59.448 34.615 9.02 0.00 0.00 3.24
2052 2267 7.070198 TGGTGATATCATTTTTCATGCAGGATT 59.930 33.333 9.02 0.00 0.00 3.01
2053 2268 7.929785 GGTGATATCATTTTTCATGCAGGATTT 59.070 33.333 9.02 0.00 0.00 2.17
2054 2269 8.975439 GTGATATCATTTTTCATGCAGGATTTC 58.025 33.333 9.02 0.00 0.00 2.17
2055 2270 8.920174 TGATATCATTTTTCATGCAGGATTTCT 58.080 29.630 0.03 0.00 0.00 2.52
2056 2271 9.193133 GATATCATTTTTCATGCAGGATTTCTG 57.807 33.333 0.03 0.00 46.03 3.02
2057 2272 6.349243 TCATTTTTCATGCAGGATTTCTGT 57.651 33.333 0.03 0.00 45.08 3.41
2058 2273 6.761312 TCATTTTTCATGCAGGATTTCTGTT 58.239 32.000 0.03 0.00 45.08 3.16
2059 2274 7.218614 TCATTTTTCATGCAGGATTTCTGTTT 58.781 30.769 0.03 0.00 45.08 2.83
2060 2275 7.385752 TCATTTTTCATGCAGGATTTCTGTTTC 59.614 33.333 0.03 0.00 45.08 2.78
2061 2276 4.424061 TTCATGCAGGATTTCTGTTTCG 57.576 40.909 0.03 0.00 45.08 3.46
2062 2277 2.162208 TCATGCAGGATTTCTGTTTCGC 59.838 45.455 0.00 0.00 45.08 4.70
2063 2278 1.896220 TGCAGGATTTCTGTTTCGCT 58.104 45.000 0.00 0.00 45.08 4.93
2064 2279 3.052455 TGCAGGATTTCTGTTTCGCTA 57.948 42.857 0.00 0.00 45.08 4.26
2065 2280 2.742053 TGCAGGATTTCTGTTTCGCTAC 59.258 45.455 0.00 0.00 45.08 3.58
2066 2281 2.742053 GCAGGATTTCTGTTTCGCTACA 59.258 45.455 0.00 0.00 45.08 2.74
2067 2282 3.375299 GCAGGATTTCTGTTTCGCTACAT 59.625 43.478 0.00 0.00 45.08 2.29
2068 2283 4.570772 GCAGGATTTCTGTTTCGCTACATA 59.429 41.667 0.00 0.00 45.08 2.29
2069 2284 5.237344 GCAGGATTTCTGTTTCGCTACATAT 59.763 40.000 0.00 0.00 45.08 1.78
2070 2285 6.564873 GCAGGATTTCTGTTTCGCTACATATC 60.565 42.308 0.00 0.00 45.08 1.63
2071 2286 6.479990 CAGGATTTCTGTTTCGCTACATATCA 59.520 38.462 0.00 0.00 38.64 2.15
2072 2287 7.011389 CAGGATTTCTGTTTCGCTACATATCAA 59.989 37.037 0.00 0.00 38.64 2.57
2073 2288 7.011482 AGGATTTCTGTTTCGCTACATATCAAC 59.989 37.037 0.00 0.00 0.00 3.18
2074 2289 7.011482 GGATTTCTGTTTCGCTACATATCAACT 59.989 37.037 0.00 0.00 0.00 3.16
2075 2290 7.667043 TTTCTGTTTCGCTACATATCAACTT 57.333 32.000 0.00 0.00 0.00 2.66
2076 2291 8.766000 TTTCTGTTTCGCTACATATCAACTTA 57.234 30.769 0.00 0.00 0.00 2.24
2077 2292 8.766000 TTCTGTTTCGCTACATATCAACTTAA 57.234 30.769 0.00 0.00 0.00 1.85
2078 2293 8.766000 TCTGTTTCGCTACATATCAACTTAAA 57.234 30.769 0.00 0.00 0.00 1.52
2079 2294 9.378551 TCTGTTTCGCTACATATCAACTTAAAT 57.621 29.630 0.00 0.00 0.00 1.40
2080 2295 9.425893 CTGTTTCGCTACATATCAACTTAAATG 57.574 33.333 0.00 0.00 0.00 2.32
2081 2296 8.941977 TGTTTCGCTACATATCAACTTAAATGT 58.058 29.630 0.00 0.00 36.56 2.71
2082 2297 9.210426 GTTTCGCTACATATCAACTTAAATGTG 57.790 33.333 0.00 0.00 34.54 3.21
2083 2298 6.943981 TCGCTACATATCAACTTAAATGTGC 58.056 36.000 0.00 0.00 34.54 4.57
2084 2299 6.761242 TCGCTACATATCAACTTAAATGTGCT 59.239 34.615 0.00 0.00 34.54 4.40
2085 2300 6.847792 CGCTACATATCAACTTAAATGTGCTG 59.152 38.462 0.00 0.00 34.54 4.41
2086 2301 7.134815 GCTACATATCAACTTAAATGTGCTGG 58.865 38.462 0.00 0.00 34.54 4.85
2087 2302 7.012327 GCTACATATCAACTTAAATGTGCTGGA 59.988 37.037 0.00 0.00 34.54 3.86
2088 2303 7.701539 ACATATCAACTTAAATGTGCTGGAA 57.298 32.000 0.00 0.00 31.56 3.53
2089 2304 7.765307 ACATATCAACTTAAATGTGCTGGAAG 58.235 34.615 0.00 0.00 31.56 3.46
2090 2305 7.611467 ACATATCAACTTAAATGTGCTGGAAGA 59.389 33.333 0.00 0.00 30.46 2.87
2091 2306 5.947228 TCAACTTAAATGTGCTGGAAGAG 57.053 39.130 0.00 0.00 34.07 2.85
2092 2307 5.376625 TCAACTTAAATGTGCTGGAAGAGT 58.623 37.500 0.00 0.00 34.07 3.24
2093 2308 5.239306 TCAACTTAAATGTGCTGGAAGAGTG 59.761 40.000 0.00 0.00 34.07 3.51
2094 2309 4.718961 ACTTAAATGTGCTGGAAGAGTGT 58.281 39.130 0.00 0.00 34.07 3.55
2095 2310 5.865085 ACTTAAATGTGCTGGAAGAGTGTA 58.135 37.500 0.00 0.00 34.07 2.90
2096 2311 6.296026 ACTTAAATGTGCTGGAAGAGTGTAA 58.704 36.000 0.00 0.00 34.07 2.41
2097 2312 6.770785 ACTTAAATGTGCTGGAAGAGTGTAAA 59.229 34.615 0.00 0.00 34.07 2.01
2098 2313 7.284489 ACTTAAATGTGCTGGAAGAGTGTAAAA 59.716 33.333 0.00 0.00 34.07 1.52
2099 2314 6.463995 AAATGTGCTGGAAGAGTGTAAAAA 57.536 33.333 0.00 0.00 34.07 1.94
2100 2315 5.695851 ATGTGCTGGAAGAGTGTAAAAAG 57.304 39.130 0.00 0.00 34.07 2.27
2101 2316 3.882888 TGTGCTGGAAGAGTGTAAAAAGG 59.117 43.478 0.00 0.00 34.07 3.11
2102 2317 3.883489 GTGCTGGAAGAGTGTAAAAAGGT 59.117 43.478 0.00 0.00 34.07 3.50
2103 2318 3.882888 TGCTGGAAGAGTGTAAAAAGGTG 59.117 43.478 0.00 0.00 34.07 4.00
2104 2319 3.883489 GCTGGAAGAGTGTAAAAAGGTGT 59.117 43.478 0.00 0.00 34.07 4.16
2105 2320 5.061179 GCTGGAAGAGTGTAAAAAGGTGTA 58.939 41.667 0.00 0.00 34.07 2.90
2106 2321 5.705905 GCTGGAAGAGTGTAAAAAGGTGTAT 59.294 40.000 0.00 0.00 34.07 2.29
2107 2322 6.206829 GCTGGAAGAGTGTAAAAAGGTGTATT 59.793 38.462 0.00 0.00 34.07 1.89
2108 2323 7.255486 GCTGGAAGAGTGTAAAAAGGTGTATTT 60.255 37.037 0.00 0.00 34.07 1.40
2109 2324 7.936584 TGGAAGAGTGTAAAAAGGTGTATTTG 58.063 34.615 0.00 0.00 0.00 2.32
2110 2325 7.558444 TGGAAGAGTGTAAAAAGGTGTATTTGT 59.442 33.333 0.00 0.00 0.00 2.83
2111 2326 8.074370 GGAAGAGTGTAAAAAGGTGTATTTGTC 58.926 37.037 0.00 0.00 0.00 3.18
2112 2327 8.747538 AAGAGTGTAAAAAGGTGTATTTGTCT 57.252 30.769 0.00 0.00 0.00 3.41
2113 2328 8.747538 AGAGTGTAAAAAGGTGTATTTGTCTT 57.252 30.769 0.00 0.00 0.00 3.01
2114 2329 9.841295 AGAGTGTAAAAAGGTGTATTTGTCTTA 57.159 29.630 0.00 0.00 0.00 2.10
2116 2331 9.841295 AGTGTAAAAAGGTGTATTTGTCTTAGA 57.159 29.630 0.00 0.00 0.00 2.10
2119 2334 9.888878 GTAAAAAGGTGTATTTGTCTTAGAACC 57.111 33.333 0.00 0.00 0.00 3.62
2120 2335 6.796705 AAAGGTGTATTTGTCTTAGAACCG 57.203 37.500 0.00 0.00 0.00 4.44
2121 2336 5.479124 AGGTGTATTTGTCTTAGAACCGT 57.521 39.130 0.00 0.00 0.00 4.83
2122 2337 5.235516 AGGTGTATTTGTCTTAGAACCGTG 58.764 41.667 0.00 0.00 0.00 4.94
2123 2338 4.992951 GGTGTATTTGTCTTAGAACCGTGT 59.007 41.667 0.00 0.00 0.00 4.49
2124 2339 5.467735 GGTGTATTTGTCTTAGAACCGTGTT 59.532 40.000 0.00 0.00 0.00 3.32
2125 2340 6.017687 GGTGTATTTGTCTTAGAACCGTGTTT 60.018 38.462 0.00 0.00 0.00 2.83
2126 2341 7.412063 GTGTATTTGTCTTAGAACCGTGTTTT 58.588 34.615 0.00 0.00 0.00 2.43
2127 2342 7.375017 GTGTATTTGTCTTAGAACCGTGTTTTG 59.625 37.037 0.00 0.00 0.00 2.44
2128 2343 3.955771 TGTCTTAGAACCGTGTTTTGC 57.044 42.857 0.00 0.00 0.00 3.68
2129 2344 3.271729 TGTCTTAGAACCGTGTTTTGCA 58.728 40.909 0.00 0.00 0.00 4.08
2130 2345 3.064271 TGTCTTAGAACCGTGTTTTGCAC 59.936 43.478 0.00 0.00 44.36 4.57
2152 2367 3.278367 GCATATAGCTGTGTTGCCATG 57.722 47.619 0.00 0.00 41.15 3.66
2153 2368 2.606308 GCATATAGCTGTGTTGCCATGC 60.606 50.000 0.00 0.00 41.15 4.06
2154 2369 2.416680 TATAGCTGTGTTGCCATGCA 57.583 45.000 0.00 0.00 36.47 3.96
2155 2370 0.813184 ATAGCTGTGTTGCCATGCAC 59.187 50.000 0.00 0.00 38.71 4.57
2156 2371 0.536915 TAGCTGTGTTGCCATGCACA 60.537 50.000 0.00 4.19 42.50 4.57
2157 2372 1.067749 GCTGTGTTGCCATGCACAA 59.932 52.632 5.56 1.04 43.81 3.33
2162 2377 2.228582 TGTGTTGCCATGCACAAGTATC 59.771 45.455 1.88 0.00 41.89 2.24
2163 2378 2.489329 GTGTTGCCATGCACAAGTATCT 59.511 45.455 0.00 0.00 38.71 1.98
2192 2436 6.958192 ACGTTGATAGTATAATAGGGTCCCAT 59.042 38.462 11.55 0.00 0.00 4.00
2221 2466 2.011540 GACCAACAGTCGATTCCTCC 57.988 55.000 0.00 0.00 35.30 4.30
2223 2468 1.909302 ACCAACAGTCGATTCCTCCAT 59.091 47.619 0.00 0.00 0.00 3.41
2233 2478 5.047660 AGTCGATTCCTCCATTCATAGCTAC 60.048 44.000 0.00 0.00 0.00 3.58
2234 2479 5.047660 GTCGATTCCTCCATTCATAGCTACT 60.048 44.000 0.00 0.00 0.00 2.57
2235 2480 6.151312 GTCGATTCCTCCATTCATAGCTACTA 59.849 42.308 0.00 0.00 0.00 1.82
2236 2481 6.151312 TCGATTCCTCCATTCATAGCTACTAC 59.849 42.308 0.00 0.00 0.00 2.73
2237 2482 6.613153 ATTCCTCCATTCATAGCTACTACC 57.387 41.667 0.00 0.00 0.00 3.18
2238 2483 5.340891 TCCTCCATTCATAGCTACTACCT 57.659 43.478 0.00 0.00 0.00 3.08
2239 2484 5.326069 TCCTCCATTCATAGCTACTACCTC 58.674 45.833 0.00 0.00 0.00 3.85
2240 2485 4.464597 CCTCCATTCATAGCTACTACCTCC 59.535 50.000 0.00 0.00 0.00 4.30
2241 2486 4.079970 TCCATTCATAGCTACTACCTCCG 58.920 47.826 0.00 0.00 0.00 4.63
2242 2487 3.827302 CCATTCATAGCTACTACCTCCGT 59.173 47.826 0.00 0.00 0.00 4.69
2243 2488 4.281182 CCATTCATAGCTACTACCTCCGTT 59.719 45.833 0.00 0.00 0.00 4.44
2244 2489 5.462405 CATTCATAGCTACTACCTCCGTTC 58.538 45.833 0.00 0.00 0.00 3.95
2245 2490 3.484407 TCATAGCTACTACCTCCGTTCC 58.516 50.000 0.00 0.00 0.00 3.62
2246 2491 3.117776 TCATAGCTACTACCTCCGTTCCA 60.118 47.826 0.00 0.00 0.00 3.53
2247 2492 2.226962 AGCTACTACCTCCGTTCCAA 57.773 50.000 0.00 0.00 0.00 3.53
2248 2493 2.532843 AGCTACTACCTCCGTTCCAAA 58.467 47.619 0.00 0.00 0.00 3.28
2249 2494 2.901839 AGCTACTACCTCCGTTCCAAAA 59.098 45.455 0.00 0.00 0.00 2.44
2250 2495 3.325716 AGCTACTACCTCCGTTCCAAAAA 59.674 43.478 0.00 0.00 0.00 1.94
2251 2496 4.019591 AGCTACTACCTCCGTTCCAAAAAT 60.020 41.667 0.00 0.00 0.00 1.82
2252 2497 5.188359 AGCTACTACCTCCGTTCCAAAAATA 59.812 40.000 0.00 0.00 0.00 1.40
2253 2498 5.876460 GCTACTACCTCCGTTCCAAAAATAA 59.124 40.000 0.00 0.00 0.00 1.40
2254 2499 6.036844 GCTACTACCTCCGTTCCAAAAATAAG 59.963 42.308 0.00 0.00 0.00 1.73
2255 2500 5.872963 ACTACCTCCGTTCCAAAAATAAGT 58.127 37.500 0.00 0.00 0.00 2.24
2256 2501 5.704053 ACTACCTCCGTTCCAAAAATAAGTG 59.296 40.000 0.00 0.00 0.00 3.16
2257 2502 4.466827 ACCTCCGTTCCAAAAATAAGTGT 58.533 39.130 0.00 0.00 0.00 3.55
2258 2503 4.517832 ACCTCCGTTCCAAAAATAAGTGTC 59.482 41.667 0.00 0.00 0.00 3.67
2259 2504 4.378046 CCTCCGTTCCAAAAATAAGTGTCG 60.378 45.833 0.00 0.00 0.00 4.35
2260 2505 4.128643 TCCGTTCCAAAAATAAGTGTCGT 58.871 39.130 0.00 0.00 0.00 4.34
2261 2506 4.024725 TCCGTTCCAAAAATAAGTGTCGTG 60.025 41.667 0.00 0.00 0.00 4.35
2262 2507 3.662186 CGTTCCAAAAATAAGTGTCGTGC 59.338 43.478 0.00 0.00 0.00 5.34
2263 2508 4.553938 CGTTCCAAAAATAAGTGTCGTGCT 60.554 41.667 0.00 0.00 0.00 4.40
2264 2509 5.278604 GTTCCAAAAATAAGTGTCGTGCTT 58.721 37.500 0.00 0.00 0.00 3.91
2265 2510 5.508200 TCCAAAAATAAGTGTCGTGCTTT 57.492 34.783 0.00 0.00 0.00 3.51
2266 2511 5.897050 TCCAAAAATAAGTGTCGTGCTTTT 58.103 33.333 0.00 0.00 0.00 2.27
2267 2512 7.028926 TCCAAAAATAAGTGTCGTGCTTTTA 57.971 32.000 0.00 0.00 0.00 1.52
2268 2513 7.136119 TCCAAAAATAAGTGTCGTGCTTTTAG 58.864 34.615 0.00 0.00 0.00 1.85
2269 2514 6.915843 CCAAAAATAAGTGTCGTGCTTTTAGT 59.084 34.615 0.00 0.00 0.00 2.24
2270 2515 7.434013 CCAAAAATAAGTGTCGTGCTTTTAGTT 59.566 33.333 0.00 0.00 0.00 2.24
2271 2516 8.469125 CAAAAATAAGTGTCGTGCTTTTAGTTC 58.531 33.333 0.00 0.00 0.00 3.01
2272 2517 6.854496 AATAAGTGTCGTGCTTTTAGTTCA 57.146 33.333 0.00 0.00 0.00 3.18
2273 2518 6.854496 ATAAGTGTCGTGCTTTTAGTTCAA 57.146 33.333 0.00 0.00 0.00 2.69
2274 2519 5.554822 AAGTGTCGTGCTTTTAGTTCAAA 57.445 34.783 0.00 0.00 0.00 2.69
2275 2520 5.751243 AGTGTCGTGCTTTTAGTTCAAAT 57.249 34.783 0.00 0.00 0.00 2.32
2276 2521 6.131544 AGTGTCGTGCTTTTAGTTCAAATT 57.868 33.333 0.00 0.00 0.00 1.82
2277 2522 6.560711 AGTGTCGTGCTTTTAGTTCAAATTT 58.439 32.000 0.00 0.00 0.00 1.82
2278 2523 6.472163 AGTGTCGTGCTTTTAGTTCAAATTTG 59.528 34.615 12.15 12.15 0.00 2.32
2279 2524 6.470877 GTGTCGTGCTTTTAGTTCAAATTTGA 59.529 34.615 16.91 16.91 34.92 2.69
2280 2525 7.008810 GTGTCGTGCTTTTAGTTCAAATTTGAA 59.991 33.333 26.01 26.01 44.31 2.69
2293 2538 7.743520 TTCAAATTTGAACTAAAACCACGAC 57.256 32.000 26.01 0.00 41.88 4.34
2294 2539 6.853720 TCAAATTTGAACTAAAACCACGACA 58.146 32.000 18.45 0.00 33.55 4.35
2295 2540 6.748198 TCAAATTTGAACTAAAACCACGACAC 59.252 34.615 18.45 0.00 33.55 3.67
2296 2541 6.445357 AATTTGAACTAAAACCACGACACT 57.555 33.333 0.00 0.00 0.00 3.55
2297 2542 5.883503 TTTGAACTAAAACCACGACACTT 57.116 34.783 0.00 0.00 0.00 3.16
2298 2543 6.981762 TTTGAACTAAAACCACGACACTTA 57.018 33.333 0.00 0.00 0.00 2.24
2299 2544 7.556733 TTTGAACTAAAACCACGACACTTAT 57.443 32.000 0.00 0.00 0.00 1.73
2300 2545 7.556733 TTGAACTAAAACCACGACACTTATT 57.443 32.000 0.00 0.00 0.00 1.40
2301 2546 7.556733 TGAACTAAAACCACGACACTTATTT 57.443 32.000 0.00 0.00 0.00 1.40
2302 2547 7.987649 TGAACTAAAACCACGACACTTATTTT 58.012 30.769 0.00 0.00 0.00 1.82
2303 2548 8.460428 TGAACTAAAACCACGACACTTATTTTT 58.540 29.630 0.00 0.00 0.00 1.94
2304 2549 8.623310 AACTAAAACCACGACACTTATTTTTG 57.377 30.769 0.00 0.00 0.00 2.44
2305 2550 7.197703 ACTAAAACCACGACACTTATTTTTGG 58.802 34.615 0.00 0.00 0.00 3.28
2306 2551 5.838531 AAACCACGACACTTATTTTTGGA 57.161 34.783 0.00 0.00 0.00 3.53
2307 2552 5.838531 AACCACGACACTTATTTTTGGAA 57.161 34.783 0.00 0.00 0.00 3.53
2308 2553 5.177725 ACCACGACACTTATTTTTGGAAC 57.822 39.130 0.00 0.00 0.00 3.62
2309 2554 4.215965 CCACGACACTTATTTTTGGAACG 58.784 43.478 0.00 0.00 0.00 3.95
2310 2555 4.215965 CACGACACTTATTTTTGGAACGG 58.784 43.478 0.00 0.00 0.00 4.44
2311 2556 4.024725 CACGACACTTATTTTTGGAACGGA 60.025 41.667 0.00 0.00 0.00 4.69
2312 2557 4.212636 ACGACACTTATTTTTGGAACGGAG 59.787 41.667 0.00 0.00 0.00 4.63
2313 2558 4.378046 CGACACTTATTTTTGGAACGGAGG 60.378 45.833 0.00 0.00 0.00 4.30
2314 2559 3.824443 ACACTTATTTTTGGAACGGAGGG 59.176 43.478 0.00 0.00 0.00 4.30
2315 2560 3.192633 CACTTATTTTTGGAACGGAGGGG 59.807 47.826 0.00 0.00 0.00 4.79
2316 2561 3.181426 ACTTATTTTTGGAACGGAGGGGT 60.181 43.478 0.00 0.00 0.00 4.95
2317 2562 4.043184 ACTTATTTTTGGAACGGAGGGGTA 59.957 41.667 0.00 0.00 0.00 3.69
2318 2563 3.750501 ATTTTTGGAACGGAGGGGTAT 57.249 42.857 0.00 0.00 0.00 2.73
2319 2564 3.529216 TTTTTGGAACGGAGGGGTATT 57.471 42.857 0.00 0.00 0.00 1.89
2320 2565 3.529216 TTTTGGAACGGAGGGGTATTT 57.471 42.857 0.00 0.00 0.00 1.40
2321 2566 4.654389 TTTTGGAACGGAGGGGTATTTA 57.346 40.909 0.00 0.00 0.00 1.40
2322 2567 4.866327 TTTGGAACGGAGGGGTATTTAT 57.134 40.909 0.00 0.00 0.00 1.40
2323 2568 4.426736 TTGGAACGGAGGGGTATTTATC 57.573 45.455 0.00 0.00 0.00 1.75
2324 2569 3.660959 TGGAACGGAGGGGTATTTATCT 58.339 45.455 0.00 0.00 0.00 1.98
2325 2570 4.042174 TGGAACGGAGGGGTATTTATCTT 58.958 43.478 0.00 0.00 0.00 2.40
2326 2571 4.102054 TGGAACGGAGGGGTATTTATCTTC 59.898 45.833 0.00 0.00 0.00 2.87
2345 2590 3.695830 TCTGACTGGGAAATGTGTACC 57.304 47.619 0.00 0.00 0.00 3.34
2351 2596 5.163184 TGACTGGGAAATGTGTACCAAACTA 60.163 40.000 0.00 0.00 31.63 2.24
2354 2599 4.822896 TGGGAAATGTGTACCAAACTACAC 59.177 41.667 3.06 3.06 44.68 2.90
2394 2639 6.163135 AGGCTTATAGTTTACCTACAGCTG 57.837 41.667 13.48 13.48 36.31 4.24
2683 2940 6.716628 TCTGAATTTCCATGCTCAACTACTTT 59.283 34.615 0.00 0.00 0.00 2.66
2685 2942 7.816640 TGAATTTCCATGCTCAACTACTTTAC 58.183 34.615 0.00 0.00 0.00 2.01
2754 3012 9.131791 TCATTAATTATTTTTGCTACTCCCTCC 57.868 33.333 0.00 0.00 0.00 4.30
2755 3013 7.562454 TTAATTATTTTTGCTACTCCCTCCG 57.438 36.000 0.00 0.00 0.00 4.63
2756 3014 4.563140 TTATTTTTGCTACTCCCTCCGT 57.437 40.909 0.00 0.00 0.00 4.69
2757 3015 2.943036 TTTTTGCTACTCCCTCCGTT 57.057 45.000 0.00 0.00 0.00 4.44
2758 3016 2.467566 TTTTGCTACTCCCTCCGTTC 57.532 50.000 0.00 0.00 0.00 3.95
2759 3017 0.245539 TTTGCTACTCCCTCCGTTCG 59.754 55.000 0.00 0.00 0.00 3.95
2760 3018 1.601419 TTGCTACTCCCTCCGTTCGG 61.601 60.000 4.74 4.74 0.00 4.30
2761 3019 1.751927 GCTACTCCCTCCGTTCGGA 60.752 63.158 13.34 13.34 0.00 4.55
2762 3020 1.318158 GCTACTCCCTCCGTTCGGAA 61.318 60.000 14.79 0.04 33.41 4.30
2763 3021 1.400737 CTACTCCCTCCGTTCGGAAT 58.599 55.000 14.79 2.09 33.41 3.01
2764 3022 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
2765 3023 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
2766 3024 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
2767 3025 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
2768 3026 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
2769 3027 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
2770 3028 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
2771 3029 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
2772 3030 3.581755 CTCCGTTCGGAATTACTTGTCA 58.418 45.455 14.79 0.00 33.41 3.58
2773 3031 3.319755 TCCGTTCGGAATTACTTGTCAC 58.680 45.455 11.66 0.00 0.00 3.67
2774 3032 3.061322 CCGTTCGGAATTACTTGTCACA 58.939 45.455 5.19 0.00 0.00 3.58
2775 3033 3.495377 CCGTTCGGAATTACTTGTCACAA 59.505 43.478 5.19 0.00 0.00 3.33
2776 3034 4.024725 CCGTTCGGAATTACTTGTCACAAA 60.025 41.667 5.19 0.00 0.00 2.83
2777 3035 5.503498 CGTTCGGAATTACTTGTCACAAAA 58.497 37.500 0.00 0.00 0.00 2.44
2778 3036 5.966503 CGTTCGGAATTACTTGTCACAAAAA 59.033 36.000 0.00 0.00 0.00 1.94
2779 3037 6.635239 CGTTCGGAATTACTTGTCACAAAAAT 59.365 34.615 0.00 0.00 0.00 1.82
2780 3038 7.357206 CGTTCGGAATTACTTGTCACAAAAATG 60.357 37.037 0.00 0.00 0.00 2.32
2781 3039 6.442952 TCGGAATTACTTGTCACAAAAATGG 58.557 36.000 0.00 0.00 0.00 3.16
2782 3040 6.263392 TCGGAATTACTTGTCACAAAAATGGA 59.737 34.615 0.00 0.00 0.00 3.41
2783 3041 7.040062 TCGGAATTACTTGTCACAAAAATGGAT 60.040 33.333 0.00 0.00 0.00 3.41
2784 3042 7.062138 CGGAATTACTTGTCACAAAAATGGATG 59.938 37.037 0.00 0.00 0.00 3.51
2785 3043 7.872483 GGAATTACTTGTCACAAAAATGGATGT 59.128 33.333 0.00 0.00 0.00 3.06
2786 3044 9.906660 GAATTACTTGTCACAAAAATGGATGTA 57.093 29.630 0.00 0.00 0.00 2.29
2789 3047 7.765695 ACTTGTCACAAAAATGGATGTATCT 57.234 32.000 0.00 0.00 0.00 1.98
2790 3048 8.862325 ACTTGTCACAAAAATGGATGTATCTA 57.138 30.769 0.00 0.00 0.00 1.98
2791 3049 8.730680 ACTTGTCACAAAAATGGATGTATCTAC 58.269 33.333 0.00 0.00 0.00 2.59
2792 3050 8.628630 TTGTCACAAAAATGGATGTATCTACA 57.371 30.769 0.00 0.00 40.98 2.74
2793 3051 8.628630 TGTCACAAAAATGGATGTATCTACAA 57.371 30.769 0.00 0.00 39.99 2.41
2794 3052 8.511321 TGTCACAAAAATGGATGTATCTACAAC 58.489 33.333 0.00 0.00 39.99 3.32
2795 3053 8.730680 GTCACAAAAATGGATGTATCTACAACT 58.269 33.333 0.00 0.00 39.99 3.16
2796 3054 9.952030 TCACAAAAATGGATGTATCTACAACTA 57.048 29.630 0.00 0.00 39.99 2.24
2827 3085 9.553064 ACATCTAGATACATTCATTTCTTGGAC 57.447 33.333 4.54 0.00 0.00 4.02
2828 3086 8.706936 CATCTAGATACATTCATTTCTTGGACG 58.293 37.037 4.54 0.00 0.00 4.79
2829 3087 8.007405 TCTAGATACATTCATTTCTTGGACGA 57.993 34.615 0.00 0.00 0.00 4.20
2830 3088 8.138074 TCTAGATACATTCATTTCTTGGACGAG 58.862 37.037 0.00 0.00 0.00 4.18
2831 3089 6.644347 AGATACATTCATTTCTTGGACGAGT 58.356 36.000 0.00 0.00 0.00 4.18
2832 3090 7.782049 AGATACATTCATTTCTTGGACGAGTA 58.218 34.615 0.00 0.00 0.00 2.59
2833 3091 8.258007 AGATACATTCATTTCTTGGACGAGTAA 58.742 33.333 0.00 0.00 0.00 2.24
2834 3092 8.964476 ATACATTCATTTCTTGGACGAGTAAT 57.036 30.769 0.00 0.00 0.00 1.89
2835 3093 7.687941 ACATTCATTTCTTGGACGAGTAATT 57.312 32.000 0.00 0.00 0.00 1.40
2836 3094 7.752695 ACATTCATTTCTTGGACGAGTAATTC 58.247 34.615 0.00 0.00 0.00 2.17
2837 3095 6.737254 TTCATTTCTTGGACGAGTAATTCC 57.263 37.500 0.00 0.00 0.00 3.01
2838 3096 4.868171 TCATTTCTTGGACGAGTAATTCCG 59.132 41.667 0.00 0.00 0.00 4.30
2839 3097 4.524316 TTTCTTGGACGAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
2840 3098 4.524316 TTCTTGGACGAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
2841 3099 3.841643 TCTTGGACGAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
2842 3100 2.267188 TGGACGAGTAATTCCGAACG 57.733 50.000 0.00 0.00 0.00 3.95
2843 3101 1.135315 TGGACGAGTAATTCCGAACGG 60.135 52.381 6.94 6.94 0.00 4.44
2844 3102 1.133025 GGACGAGTAATTCCGAACGGA 59.867 52.381 12.04 12.04 43.52 4.69
2845 3103 2.448219 GACGAGTAATTCCGAACGGAG 58.552 52.381 15.34 5.60 46.06 4.63
2846 3104 1.133790 ACGAGTAATTCCGAACGGAGG 59.866 52.381 15.34 4.28 46.06 4.30
2847 3105 1.535437 CGAGTAATTCCGAACGGAGGG 60.535 57.143 15.34 0.00 46.06 4.30
2848 3106 1.753073 GAGTAATTCCGAACGGAGGGA 59.247 52.381 15.34 2.49 46.06 4.20
2849 3107 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
2850 3108 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
2851 3109 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
2852 3110 1.109609 ATTCCGAACGGAGGGAGTAC 58.890 55.000 15.34 0.00 46.06 2.73
2864 3122 5.105432 ACGGAGGGAGTACTTGTCTTAAATC 60.105 44.000 0.00 0.00 0.00 2.17
2876 3134 7.106239 ACTTGTCTTAAATCCATGTAGGTCTG 58.894 38.462 0.00 0.00 39.02 3.51
2904 3162 7.176285 GTGTTAACCACATAAACGAGTTACA 57.824 36.000 2.48 0.00 43.92 2.41
2905 3163 7.799784 GTGTTAACCACATAAACGAGTTACAT 58.200 34.615 2.48 0.00 43.92 2.29
2910 3171 5.810587 ACCACATAAACGAGTTACATAGCAG 59.189 40.000 0.00 0.00 0.00 4.24
2911 3172 6.040247 CCACATAAACGAGTTACATAGCAGA 58.960 40.000 0.00 0.00 0.00 4.26
2914 3175 8.604035 CACATAAACGAGTTACATAGCAGATTT 58.396 33.333 0.00 0.00 0.00 2.17
2979 3242 4.080695 AGCATCTCTTTATCCTTGTGAGCA 60.081 41.667 0.00 0.00 0.00 4.26
2983 3246 5.003804 TCTCTTTATCCTTGTGAGCAAACC 58.996 41.667 0.00 0.00 33.73 3.27
2985 3248 3.517296 TTATCCTTGTGAGCAAACCCA 57.483 42.857 0.00 0.00 33.73 4.51
2987 3250 3.737559 ATCCTTGTGAGCAAACCCATA 57.262 42.857 0.00 0.00 33.73 2.74
2988 3251 3.737559 TCCTTGTGAGCAAACCCATAT 57.262 42.857 0.00 0.00 33.73 1.78
2989 3252 4.853468 TCCTTGTGAGCAAACCCATATA 57.147 40.909 0.00 0.00 33.73 0.86
3030 3293 0.518636 CATCCAACACGCTGTTCCTG 59.481 55.000 1.17 0.00 38.77 3.86
3031 3294 0.606401 ATCCAACACGCTGTTCCTGG 60.606 55.000 1.17 0.00 38.77 4.45
3048 3319 2.436115 GACTGGGCCAGCGGTAAC 60.436 66.667 33.04 13.50 34.37 2.50
3080 3351 5.418840 AGGAACAACCAATGGATGTCAATAC 59.581 40.000 15.59 1.42 37.73 1.89
3094 3365 8.539544 TGGATGTCAATACAAGTCAGATTCTAA 58.460 33.333 0.00 0.00 39.58 2.10
3102 3373 5.552178 ACAAGTCAGATTCTAACTGGAACC 58.448 41.667 0.00 0.00 36.22 3.62
3105 3376 4.468153 AGTCAGATTCTAACTGGAACCTCC 59.532 45.833 0.00 0.00 36.22 4.30
3115 3386 2.505819 ACTGGAACCTCCCATGTATCAC 59.494 50.000 0.00 0.00 35.03 3.06
3117 3388 2.916269 TGGAACCTCCCATGTATCACAA 59.084 45.455 0.00 0.00 35.03 3.33
3119 3390 4.017591 TGGAACCTCCCATGTATCACAATT 60.018 41.667 0.00 0.00 35.03 2.32
3169 3442 9.916360 TTGTGTAACTATAGGAGAACATAGAGA 57.084 33.333 4.43 0.00 38.04 3.10
3184 3459 9.434420 AGAACATAGAGAGATTCAAAAGTCTTG 57.566 33.333 0.00 0.00 0.00 3.02
3227 3502 3.558931 TGAGAGTGCTGAGGTGAAAAA 57.441 42.857 0.00 0.00 0.00 1.94
3425 3705 8.757982 AGGTCGAAGGTAATTATAAGACACTA 57.242 34.615 0.00 0.00 0.00 2.74
3575 3855 3.287867 ACCCTCGTATTACGGAAGAGA 57.712 47.619 15.69 0.00 42.81 3.10
3730 4022 2.606519 CCCAACCCTCGTCCCAGA 60.607 66.667 0.00 0.00 0.00 3.86
3739 4031 2.747855 CGTCCCAGAAAGCCCTGC 60.748 66.667 0.00 0.00 32.97 4.85
3766 4058 3.247006 TCGCTGAAGTTACTTCCATCC 57.753 47.619 20.69 6.91 39.51 3.51
3767 4059 2.565391 TCGCTGAAGTTACTTCCATCCA 59.435 45.455 20.69 3.28 39.51 3.41
3768 4060 3.197766 TCGCTGAAGTTACTTCCATCCAT 59.802 43.478 20.69 0.00 39.51 3.41
3769 4061 3.557595 CGCTGAAGTTACTTCCATCCATC 59.442 47.826 20.69 0.00 39.51 3.51
3770 4062 3.557595 GCTGAAGTTACTTCCATCCATCG 59.442 47.826 20.69 2.65 39.51 3.84
3771 4063 4.680708 GCTGAAGTTACTTCCATCCATCGA 60.681 45.833 20.69 0.00 39.51 3.59
3772 4064 5.011090 TGAAGTTACTTCCATCCATCGAG 57.989 43.478 20.69 0.00 39.51 4.04
3793 4085 5.336055 CGAGCTGCAGTATATAAGGCTAAGT 60.336 44.000 16.64 0.00 0.00 2.24
3812 4104 1.529713 GAAACCCGGCCTTGTTGGA 60.530 57.895 0.00 0.00 38.35 3.53
3938 4241 4.507710 TCAGTGCTGATTGATACAGTTCC 58.492 43.478 0.00 0.00 37.64 3.62
3993 4296 5.299531 ACTTGCAATAGCTACGACTATCAGA 59.700 40.000 0.00 0.00 42.74 3.27
4143 4449 1.123928 CCTAGATTCTTCCCGTGGCT 58.876 55.000 0.00 0.00 0.00 4.75
4169 4475 6.183360 GGGCACTGTTTCATTACCTGTTATAC 60.183 42.308 0.00 0.00 0.00 1.47
4218 4524 5.390991 CGTCCTTGTTAAAATCTGAAGGCTC 60.391 44.000 0.00 0.00 34.34 4.70
4261 4567 3.370978 CCAAGTGATTGCTAGTAACGTGG 59.629 47.826 0.00 0.00 34.80 4.94
4401 4708 2.724839 GCCTCTACGAAAACGCAATGTG 60.725 50.000 0.00 0.00 0.00 3.21
4414 4721 7.650834 AAACGCAATGTGCTAAAAACATTAT 57.349 28.000 1.76 0.00 44.43 1.28
4415 4722 6.630676 ACGCAATGTGCTAAAAACATTATG 57.369 33.333 1.76 0.00 44.43 1.90
4425 4732 6.098679 GCTAAAAACATTATGGATGCACACA 58.901 36.000 0.00 0.00 39.47 3.72
4429 4736 2.760092 ACATTATGGATGCACACAACCC 59.240 45.455 0.00 0.00 37.94 4.11
4458 4765 4.842139 AGAAGAAAAATCGAACGATCCG 57.158 40.909 10.07 0.00 33.08 4.18
4459 4766 3.062234 AGAAGAAAAATCGAACGATCCGC 59.938 43.478 10.07 1.74 33.08 5.54
4480 4787 4.631377 CGCCTACAGTGATCAATTCTTTGA 59.369 41.667 0.00 0.00 45.57 2.69
4484 4856 7.025963 CCTACAGTGATCAATTCTTTGAAAGC 58.974 38.462 0.00 0.00 44.70 3.51
4494 4866 7.281841 TCAATTCTTTGAAAGCCCAAATTCTT 58.718 30.769 0.00 0.00 38.90 2.52
4505 4877 2.574322 CCAAATTCTTCACAAGCGACG 58.426 47.619 0.00 0.00 0.00 5.12
4509 4881 0.531974 TTCTTCACAAGCGACGCCTT 60.532 50.000 17.79 7.46 0.00 4.35
4516 4888 0.164647 CAAGCGACGCCTTCAGAAAG 59.835 55.000 17.79 0.00 0.00 2.62
4534 4906 0.748005 AGGAAACAGTGCACAAGCGT 60.748 50.000 21.04 7.51 46.23 5.07
4537 4909 1.366111 AAACAGTGCACAAGCGTCGT 61.366 50.000 21.04 1.13 46.23 4.34
4638 5015 4.792068 TGAAGTCCAAATTCTCCACAAGT 58.208 39.130 0.00 0.00 0.00 3.16
4640 5017 4.170468 AGTCCAAATTCTCCACAAGTGT 57.830 40.909 0.00 0.00 0.00 3.55
4641 5018 4.137543 AGTCCAAATTCTCCACAAGTGTC 58.862 43.478 0.00 0.00 0.00 3.67
4642 5019 3.882888 GTCCAAATTCTCCACAAGTGTCA 59.117 43.478 0.00 0.00 0.00 3.58
4662 5070 2.048127 GCCGCCCGATCATAGGTC 60.048 66.667 0.00 0.00 0.00 3.85
4666 5074 1.616865 CCGCCCGATCATAGGTCTTAA 59.383 52.381 0.00 0.00 0.00 1.85
4671 5079 5.123936 GCCCGATCATAGGTCTTAAGTTTT 58.876 41.667 1.63 0.00 0.00 2.43
4681 5089 5.377478 AGGTCTTAAGTTTTCACCCTGAAG 58.623 41.667 1.63 0.00 37.70 3.02
4689 5097 4.278419 AGTTTTCACCCTGAAGAAAATCCG 59.722 41.667 0.00 0.00 43.25 4.18
4694 5102 0.804989 CCTGAAGAAAATCCGCGCTT 59.195 50.000 5.56 0.00 0.00 4.68
4695 5103 2.006888 CCTGAAGAAAATCCGCGCTTA 58.993 47.619 5.56 0.00 0.00 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.588596 TGTGTGCGTGCTGTCCAG 60.589 61.111 0.00 0.00 0.00 3.86
89 90 3.696051 GCTGAAAGTAGATCCCATGCAAA 59.304 43.478 0.00 0.00 35.30 3.68
132 133 2.737252 CTCGGCTGGTTAAAACAGAGAC 59.263 50.000 11.48 0.29 38.20 3.36
244 245 0.601558 CTACCATATCCCACCCGTCG 59.398 60.000 0.00 0.00 0.00 5.12
250 251 1.961394 TCACGCTCTACCATATCCCAC 59.039 52.381 0.00 0.00 0.00 4.61
301 302 3.950794 TTCCCACTGCGCGATGTCC 62.951 63.158 12.10 0.00 0.00 4.02
337 338 4.561735 TTTCTTTTTAGAACCACTGCGG 57.438 40.909 0.00 0.00 42.50 5.69
497 508 2.279173 ACCCTACAATGCCCTTCTCTT 58.721 47.619 0.00 0.00 0.00 2.85
498 509 1.972588 ACCCTACAATGCCCTTCTCT 58.027 50.000 0.00 0.00 0.00 3.10
499 510 3.039011 TCTACCCTACAATGCCCTTCTC 58.961 50.000 0.00 0.00 0.00 2.87
606 630 5.420409 AGCAGTAACATTTCAGCTAGTACC 58.580 41.667 0.00 0.00 0.00 3.34
611 635 5.643777 GGAAAGAGCAGTAACATTTCAGCTA 59.356 40.000 0.00 0.00 32.73 3.32
622 646 6.605471 TTCTGATACAGGAAAGAGCAGTAA 57.395 37.500 0.00 0.00 31.51 2.24
624 648 5.489792 TTTCTGATACAGGAAAGAGCAGT 57.510 39.130 0.00 0.00 31.51 4.40
720 747 6.565811 GCATGATGTCGTTAAACACTTTCTGA 60.566 38.462 0.00 0.00 30.55 3.27
722 749 5.334879 GGCATGATGTCGTTAAACACTTTCT 60.335 40.000 0.00 0.00 30.55 2.52
730 757 5.048434 TCAACATTGGCATGATGTCGTTAAA 60.048 36.000 5.34 0.00 36.76 1.52
736 763 4.707030 TTCTCAACATTGGCATGATGTC 57.293 40.909 5.34 0.00 36.76 3.06
803 863 7.633361 TCTTTTTCGTCAGTGACACTTATAC 57.367 36.000 22.66 4.04 32.09 1.47
971 1033 3.854669 CTGGGGCGCAGGTCTAGG 61.855 72.222 22.71 0.00 0.00 3.02
972 1034 3.854669 CCTGGGGCGCAGGTCTAG 61.855 72.222 35.27 15.09 35.19 2.43
1241 1321 3.260128 TCTCACTAGCATCATAGGCCATG 59.740 47.826 5.01 7.20 35.81 3.66
1291 1375 2.492019 AAAGCAAAAACAGAGACGCC 57.508 45.000 0.00 0.00 0.00 5.68
1358 1444 1.653151 GAACAATCGAGGCCCAGTAC 58.347 55.000 0.00 0.00 0.00 2.73
1381 1467 7.504403 TCAAATCTAGCAACAAATTCCCAAAA 58.496 30.769 0.00 0.00 0.00 2.44
1406 1492 0.392193 CAGCAAGCTCCTCCAACGAT 60.392 55.000 0.00 0.00 0.00 3.73
1485 1571 1.072331 ACCCATCTCACAAGGACACAC 59.928 52.381 0.00 0.00 0.00 3.82
1510 1599 7.421530 TTTCACAGAGAAAATTCTAAGACCG 57.578 36.000 0.00 0.00 43.00 4.79
1534 1623 5.047660 ACAAACCACAACAACACACATTAGT 60.048 36.000 0.00 0.00 0.00 2.24
1710 1799 6.177310 TGTAAGCAAGGAAACACTACCTAA 57.823 37.500 0.00 0.00 35.25 2.69
1715 1804 6.544197 TGTGAATTGTAAGCAAGGAAACACTA 59.456 34.615 0.00 0.00 38.10 2.74
1719 1808 4.675114 CGTGTGAATTGTAAGCAAGGAAAC 59.325 41.667 0.00 0.00 38.10 2.78
1724 1813 5.688823 TGAATCGTGTGAATTGTAAGCAAG 58.311 37.500 0.00 0.00 38.10 4.01
1725 1814 5.468409 TCTGAATCGTGTGAATTGTAAGCAA 59.532 36.000 0.00 0.00 39.16 3.91
1727 1816 5.107104 TGTCTGAATCGTGTGAATTGTAAGC 60.107 40.000 0.00 0.00 0.00 3.09
1774 1907 6.932947 ACTTAAGTCTGAATAGTAAAGGCGT 58.067 36.000 1.12 0.00 0.00 5.68
1796 1929 9.426837 TCAATAACACAACGCTTACTATTTACT 57.573 29.630 0.00 0.00 0.00 2.24
1797 1930 9.685005 CTCAATAACACAACGCTTACTATTTAC 57.315 33.333 0.00 0.00 0.00 2.01
1798 1931 9.426837 ACTCAATAACACAACGCTTACTATTTA 57.573 29.630 0.00 0.00 0.00 1.40
1800 1933 7.900782 ACTCAATAACACAACGCTTACTATT 57.099 32.000 0.00 0.00 0.00 1.73
1801 1934 8.991243 TTACTCAATAACACAACGCTTACTAT 57.009 30.769 0.00 0.00 0.00 2.12
1809 2024 7.642194 ACACACATTTTACTCAATAACACAACG 59.358 33.333 0.00 0.00 0.00 4.10
1812 2027 7.990917 ACACACACATTTTACTCAATAACACA 58.009 30.769 0.00 0.00 0.00 3.72
1851 2066 1.202976 AGCATATGCCCACATCCTTCC 60.203 52.381 23.96 0.00 43.38 3.46
1853 2068 2.313317 CAAGCATATGCCCACATCCTT 58.687 47.619 23.96 6.41 43.38 3.36
1898 2113 3.619038 GCCTATGTGTGAAGCTTACACTC 59.381 47.826 25.69 21.49 46.49 3.51
1920 2135 7.568267 ACTAATAAATAGTCATCATCGTGCG 57.432 36.000 0.00 0.00 41.04 5.34
1976 2191 3.758023 CTGAATCCACAGCATACAACCAA 59.242 43.478 0.00 0.00 0.00 3.67
1978 2193 3.347216 ACTGAATCCACAGCATACAACC 58.653 45.455 0.00 0.00 41.06 3.77
1987 2202 6.969366 TGTTGTTTTATGACTGAATCCACAG 58.031 36.000 0.00 0.00 42.78 3.66
2020 2235 8.355169 GCATGAAAAATGATATCACCAGTACAT 58.645 33.333 7.78 7.31 0.00 2.29
2022 2237 7.706159 TGCATGAAAAATGATATCACCAGTAC 58.294 34.615 7.78 0.00 0.00 2.73
2023 2238 7.013559 CCTGCATGAAAAATGATATCACCAGTA 59.986 37.037 7.78 0.00 30.16 2.74
2024 2239 6.183360 CCTGCATGAAAAATGATATCACCAGT 60.183 38.462 7.78 0.00 30.16 4.00
2025 2240 6.040054 TCCTGCATGAAAAATGATATCACCAG 59.960 38.462 7.78 3.99 0.00 4.00
2026 2241 5.892686 TCCTGCATGAAAAATGATATCACCA 59.107 36.000 7.78 2.17 0.00 4.17
2027 2242 6.395426 TCCTGCATGAAAAATGATATCACC 57.605 37.500 7.78 0.00 0.00 4.02
2028 2243 8.882415 AAATCCTGCATGAAAAATGATATCAC 57.118 30.769 7.78 0.00 0.00 3.06
2029 2244 8.920174 AGAAATCCTGCATGAAAAATGATATCA 58.080 29.630 8.10 8.10 0.00 2.15
2030 2245 9.193133 CAGAAATCCTGCATGAAAAATGATATC 57.807 33.333 0.00 0.00 35.89 1.63
2031 2246 8.701895 ACAGAAATCCTGCATGAAAAATGATAT 58.298 29.630 0.00 0.00 46.81 1.63
2032 2247 8.070034 ACAGAAATCCTGCATGAAAAATGATA 57.930 30.769 0.00 0.00 46.81 2.15
2033 2248 6.942976 ACAGAAATCCTGCATGAAAAATGAT 58.057 32.000 0.00 0.00 46.81 2.45
2034 2249 6.349243 ACAGAAATCCTGCATGAAAAATGA 57.651 33.333 0.00 0.00 46.81 2.57
2035 2250 7.429636 AAACAGAAATCCTGCATGAAAAATG 57.570 32.000 0.00 0.00 46.81 2.32
2036 2251 6.366877 CGAAACAGAAATCCTGCATGAAAAAT 59.633 34.615 0.00 0.00 46.81 1.82
2037 2252 5.691305 CGAAACAGAAATCCTGCATGAAAAA 59.309 36.000 0.00 0.00 46.81 1.94
2038 2253 5.221880 CGAAACAGAAATCCTGCATGAAAA 58.778 37.500 0.00 0.00 46.81 2.29
2039 2254 4.797471 CGAAACAGAAATCCTGCATGAAA 58.203 39.130 0.00 0.00 46.81 2.69
2040 2255 3.366273 GCGAAACAGAAATCCTGCATGAA 60.366 43.478 0.00 0.00 46.81 2.57
2041 2256 2.162208 GCGAAACAGAAATCCTGCATGA 59.838 45.455 0.00 0.00 46.81 3.07
2042 2257 2.163010 AGCGAAACAGAAATCCTGCATG 59.837 45.455 0.00 0.00 46.81 4.06
2043 2258 2.440409 AGCGAAACAGAAATCCTGCAT 58.560 42.857 0.00 0.00 46.81 3.96
2044 2259 1.896220 AGCGAAACAGAAATCCTGCA 58.104 45.000 0.00 0.00 46.81 4.41
2045 2260 2.742053 TGTAGCGAAACAGAAATCCTGC 59.258 45.455 0.00 0.00 46.81 4.85
2047 2262 6.582636 TGATATGTAGCGAAACAGAAATCCT 58.417 36.000 0.00 0.00 31.70 3.24
2048 2263 6.844696 TGATATGTAGCGAAACAGAAATCC 57.155 37.500 0.00 0.00 31.70 3.01
2049 2264 7.910304 AGTTGATATGTAGCGAAACAGAAATC 58.090 34.615 0.00 0.00 31.70 2.17
2050 2265 7.849804 AGTTGATATGTAGCGAAACAGAAAT 57.150 32.000 0.00 0.00 31.70 2.17
2051 2266 7.667043 AAGTTGATATGTAGCGAAACAGAAA 57.333 32.000 0.00 0.00 31.70 2.52
2052 2267 8.766000 TTAAGTTGATATGTAGCGAAACAGAA 57.234 30.769 0.00 0.00 31.70 3.02
2053 2268 8.766000 TTTAAGTTGATATGTAGCGAAACAGA 57.234 30.769 0.00 0.00 31.70 3.41
2054 2269 9.425893 CATTTAAGTTGATATGTAGCGAAACAG 57.574 33.333 0.00 0.00 31.70 3.16
2055 2270 8.941977 ACATTTAAGTTGATATGTAGCGAAACA 58.058 29.630 0.00 0.00 29.93 2.83
2056 2271 9.210426 CACATTTAAGTTGATATGTAGCGAAAC 57.790 33.333 0.00 0.00 30.53 2.78
2057 2272 7.908082 GCACATTTAAGTTGATATGTAGCGAAA 59.092 33.333 0.00 0.00 30.53 3.46
2058 2273 7.279981 AGCACATTTAAGTTGATATGTAGCGAA 59.720 33.333 0.00 0.00 33.90 4.70
2059 2274 6.761242 AGCACATTTAAGTTGATATGTAGCGA 59.239 34.615 0.00 0.00 33.90 4.93
2060 2275 6.847792 CAGCACATTTAAGTTGATATGTAGCG 59.152 38.462 0.00 0.00 33.90 4.26
2061 2276 7.012327 TCCAGCACATTTAAGTTGATATGTAGC 59.988 37.037 0.00 0.00 30.53 3.58
2062 2277 8.437360 TCCAGCACATTTAAGTTGATATGTAG 57.563 34.615 0.00 0.00 30.53 2.74
2063 2278 8.800370 TTCCAGCACATTTAAGTTGATATGTA 57.200 30.769 0.00 0.00 30.53 2.29
2064 2279 7.611467 TCTTCCAGCACATTTAAGTTGATATGT 59.389 33.333 0.00 0.00 0.00 2.29
2065 2280 7.988737 TCTTCCAGCACATTTAAGTTGATATG 58.011 34.615 0.00 0.00 0.00 1.78
2066 2281 7.831193 ACTCTTCCAGCACATTTAAGTTGATAT 59.169 33.333 0.00 0.00 0.00 1.63
2067 2282 7.119699 CACTCTTCCAGCACATTTAAGTTGATA 59.880 37.037 0.00 0.00 0.00 2.15
2068 2283 6.006449 ACTCTTCCAGCACATTTAAGTTGAT 58.994 36.000 0.00 0.00 0.00 2.57
2069 2284 5.239306 CACTCTTCCAGCACATTTAAGTTGA 59.761 40.000 0.00 0.00 0.00 3.18
2070 2285 5.009010 ACACTCTTCCAGCACATTTAAGTTG 59.991 40.000 0.00 0.00 0.00 3.16
2071 2286 5.133221 ACACTCTTCCAGCACATTTAAGTT 58.867 37.500 0.00 0.00 0.00 2.66
2072 2287 4.718961 ACACTCTTCCAGCACATTTAAGT 58.281 39.130 0.00 0.00 0.00 2.24
2073 2288 6.801539 TTACACTCTTCCAGCACATTTAAG 57.198 37.500 0.00 0.00 0.00 1.85
2074 2289 7.575414 TTTTACACTCTTCCAGCACATTTAA 57.425 32.000 0.00 0.00 0.00 1.52
2075 2290 7.255451 CCTTTTTACACTCTTCCAGCACATTTA 60.255 37.037 0.00 0.00 0.00 1.40
2076 2291 6.461509 CCTTTTTACACTCTTCCAGCACATTT 60.462 38.462 0.00 0.00 0.00 2.32
2077 2292 5.010012 CCTTTTTACACTCTTCCAGCACATT 59.990 40.000 0.00 0.00 0.00 2.71
2078 2293 4.520492 CCTTTTTACACTCTTCCAGCACAT 59.480 41.667 0.00 0.00 0.00 3.21
2079 2294 3.882888 CCTTTTTACACTCTTCCAGCACA 59.117 43.478 0.00 0.00 0.00 4.57
2080 2295 3.883489 ACCTTTTTACACTCTTCCAGCAC 59.117 43.478 0.00 0.00 0.00 4.40
2081 2296 3.882888 CACCTTTTTACACTCTTCCAGCA 59.117 43.478 0.00 0.00 0.00 4.41
2082 2297 3.883489 ACACCTTTTTACACTCTTCCAGC 59.117 43.478 0.00 0.00 0.00 4.85
2083 2298 7.745620 AATACACCTTTTTACACTCTTCCAG 57.254 36.000 0.00 0.00 0.00 3.86
2084 2299 7.558444 ACAAATACACCTTTTTACACTCTTCCA 59.442 33.333 0.00 0.00 0.00 3.53
2085 2300 7.937649 ACAAATACACCTTTTTACACTCTTCC 58.062 34.615 0.00 0.00 0.00 3.46
2086 2301 8.837389 AGACAAATACACCTTTTTACACTCTTC 58.163 33.333 0.00 0.00 0.00 2.87
2087 2302 8.747538 AGACAAATACACCTTTTTACACTCTT 57.252 30.769 0.00 0.00 0.00 2.85
2088 2303 8.747538 AAGACAAATACACCTTTTTACACTCT 57.252 30.769 0.00 0.00 0.00 3.24
2090 2305 9.841295 TCTAAGACAAATACACCTTTTTACACT 57.159 29.630 0.00 0.00 0.00 3.55
2093 2308 9.888878 GGTTCTAAGACAAATACACCTTTTTAC 57.111 33.333 0.00 0.00 0.00 2.01
2094 2309 8.776470 CGGTTCTAAGACAAATACACCTTTTTA 58.224 33.333 0.00 0.00 0.00 1.52
2095 2310 7.283807 ACGGTTCTAAGACAAATACACCTTTTT 59.716 33.333 0.00 0.00 0.00 1.94
2096 2311 6.769341 ACGGTTCTAAGACAAATACACCTTTT 59.231 34.615 0.00 0.00 0.00 2.27
2097 2312 6.204108 CACGGTTCTAAGACAAATACACCTTT 59.796 38.462 0.00 0.00 0.00 3.11
2098 2313 5.699458 CACGGTTCTAAGACAAATACACCTT 59.301 40.000 0.00 0.00 0.00 3.50
2099 2314 5.221581 ACACGGTTCTAAGACAAATACACCT 60.222 40.000 0.00 0.00 0.00 4.00
2100 2315 4.992951 ACACGGTTCTAAGACAAATACACC 59.007 41.667 0.00 0.00 0.00 4.16
2101 2316 6.535274 AACACGGTTCTAAGACAAATACAC 57.465 37.500 0.00 0.00 0.00 2.90
2102 2317 7.411274 CAAAACACGGTTCTAAGACAAATACA 58.589 34.615 0.00 0.00 0.00 2.29
2103 2318 6.358822 GCAAAACACGGTTCTAAGACAAATAC 59.641 38.462 0.00 0.00 0.00 1.89
2104 2319 6.038382 TGCAAAACACGGTTCTAAGACAAATA 59.962 34.615 0.00 0.00 0.00 1.40
2105 2320 5.163602 TGCAAAACACGGTTCTAAGACAAAT 60.164 36.000 0.00 0.00 0.00 2.32
2106 2321 4.156190 TGCAAAACACGGTTCTAAGACAAA 59.844 37.500 0.00 0.00 0.00 2.83
2107 2322 3.690139 TGCAAAACACGGTTCTAAGACAA 59.310 39.130 0.00 0.00 0.00 3.18
2108 2323 3.064271 GTGCAAAACACGGTTCTAAGACA 59.936 43.478 0.00 0.00 40.07 3.41
2109 2324 3.614588 GTGCAAAACACGGTTCTAAGAC 58.385 45.455 0.00 0.00 40.07 3.01
2110 2325 3.955771 GTGCAAAACACGGTTCTAAGA 57.044 42.857 0.00 0.00 40.07 2.10
2144 2359 4.576053 TGATAGATACTTGTGCATGGCAAC 59.424 41.667 0.00 0.00 41.47 4.17
2145 2360 4.576053 GTGATAGATACTTGTGCATGGCAA 59.424 41.667 0.00 0.00 41.47 4.52
2146 2361 4.129380 GTGATAGATACTTGTGCATGGCA 58.871 43.478 0.00 0.00 35.60 4.92
2147 2362 3.185188 CGTGATAGATACTTGTGCATGGC 59.815 47.826 0.00 0.00 0.00 4.40
2148 2363 4.371786 ACGTGATAGATACTTGTGCATGG 58.628 43.478 0.00 0.00 0.00 3.66
2149 2364 5.519927 TCAACGTGATAGATACTTGTGCATG 59.480 40.000 0.00 0.00 0.00 4.06
2150 2365 5.660460 TCAACGTGATAGATACTTGTGCAT 58.340 37.500 0.00 0.00 0.00 3.96
2151 2366 5.066968 TCAACGTGATAGATACTTGTGCA 57.933 39.130 0.00 0.00 0.00 4.57
2163 2378 9.182214 GGACCCTATTATACTATCAACGTGATA 57.818 37.037 0.00 0.00 38.26 2.15
2221 2466 5.455056 AACGGAGGTAGTAGCTATGAATG 57.545 43.478 0.89 0.00 0.00 2.67
2223 2468 3.887716 GGAACGGAGGTAGTAGCTATGAA 59.112 47.826 0.89 0.00 0.00 2.57
2233 2478 5.704053 ACACTTATTTTTGGAACGGAGGTAG 59.296 40.000 0.00 0.00 0.00 3.18
2234 2479 5.623169 ACACTTATTTTTGGAACGGAGGTA 58.377 37.500 0.00 0.00 0.00 3.08
2235 2480 4.466827 ACACTTATTTTTGGAACGGAGGT 58.533 39.130 0.00 0.00 0.00 3.85
2236 2481 4.378046 CGACACTTATTTTTGGAACGGAGG 60.378 45.833 0.00 0.00 0.00 4.30
2237 2482 4.212636 ACGACACTTATTTTTGGAACGGAG 59.787 41.667 0.00 0.00 0.00 4.63
2238 2483 4.024725 CACGACACTTATTTTTGGAACGGA 60.025 41.667 0.00 0.00 0.00 4.69
2239 2484 4.215965 CACGACACTTATTTTTGGAACGG 58.784 43.478 0.00 0.00 0.00 4.44
2240 2485 3.662186 GCACGACACTTATTTTTGGAACG 59.338 43.478 0.00 0.00 0.00 3.95
2241 2486 4.855531 AGCACGACACTTATTTTTGGAAC 58.144 39.130 0.00 0.00 0.00 3.62
2242 2487 5.508200 AAGCACGACACTTATTTTTGGAA 57.492 34.783 0.00 0.00 0.00 3.53
2243 2488 5.508200 AAAGCACGACACTTATTTTTGGA 57.492 34.783 0.00 0.00 0.00 3.53
2244 2489 6.915843 ACTAAAAGCACGACACTTATTTTTGG 59.084 34.615 0.00 0.00 0.00 3.28
2245 2490 7.908193 ACTAAAAGCACGACACTTATTTTTG 57.092 32.000 0.00 0.00 0.00 2.44
2246 2491 8.185505 TGAACTAAAAGCACGACACTTATTTTT 58.814 29.630 0.00 0.00 0.00 1.94
2247 2492 7.699566 TGAACTAAAAGCACGACACTTATTTT 58.300 30.769 0.00 0.00 0.00 1.82
2248 2493 7.254227 TGAACTAAAAGCACGACACTTATTT 57.746 32.000 0.00 0.00 0.00 1.40
2249 2494 6.854496 TGAACTAAAAGCACGACACTTATT 57.146 33.333 0.00 0.00 0.00 1.40
2250 2495 6.854496 TTGAACTAAAAGCACGACACTTAT 57.146 33.333 0.00 0.00 0.00 1.73
2251 2496 6.665474 TTTGAACTAAAAGCACGACACTTA 57.335 33.333 0.00 0.00 0.00 2.24
2252 2497 5.554822 TTTGAACTAAAAGCACGACACTT 57.445 34.783 0.00 0.00 0.00 3.16
2253 2498 5.751243 ATTTGAACTAAAAGCACGACACT 57.249 34.783 0.00 0.00 0.00 3.55
2254 2499 6.470877 TCAAATTTGAACTAAAAGCACGACAC 59.529 34.615 18.45 0.00 33.55 3.67
2255 2500 6.556212 TCAAATTTGAACTAAAAGCACGACA 58.444 32.000 18.45 0.00 33.55 4.35
2256 2501 7.444558 TTCAAATTTGAACTAAAAGCACGAC 57.555 32.000 26.01 0.00 41.88 4.34
2269 2514 7.273815 GTGTCGTGGTTTTAGTTCAAATTTGAA 59.726 33.333 26.01 26.01 44.31 2.69
2270 2515 6.748198 GTGTCGTGGTTTTAGTTCAAATTTGA 59.252 34.615 16.91 16.91 34.92 2.69
2271 2516 6.750039 AGTGTCGTGGTTTTAGTTCAAATTTG 59.250 34.615 12.15 12.15 0.00 2.32
2272 2517 6.859017 AGTGTCGTGGTTTTAGTTCAAATTT 58.141 32.000 0.00 0.00 0.00 1.82
2273 2518 6.445357 AGTGTCGTGGTTTTAGTTCAAATT 57.555 33.333 0.00 0.00 0.00 1.82
2274 2519 6.445357 AAGTGTCGTGGTTTTAGTTCAAAT 57.555 33.333 0.00 0.00 0.00 2.32
2275 2520 5.883503 AAGTGTCGTGGTTTTAGTTCAAA 57.116 34.783 0.00 0.00 0.00 2.69
2276 2521 7.556733 AATAAGTGTCGTGGTTTTAGTTCAA 57.443 32.000 0.00 0.00 0.00 2.69
2277 2522 7.556733 AAATAAGTGTCGTGGTTTTAGTTCA 57.443 32.000 0.00 0.00 0.00 3.18
2278 2523 8.739461 CAAAAATAAGTGTCGTGGTTTTAGTTC 58.261 33.333 0.00 0.00 0.00 3.01
2279 2524 7.703197 CCAAAAATAAGTGTCGTGGTTTTAGTT 59.297 33.333 0.00 0.00 0.00 2.24
2280 2525 7.067251 TCCAAAAATAAGTGTCGTGGTTTTAGT 59.933 33.333 0.00 0.00 0.00 2.24
2281 2526 7.419204 TCCAAAAATAAGTGTCGTGGTTTTAG 58.581 34.615 0.00 0.00 0.00 1.85
2282 2527 7.330900 TCCAAAAATAAGTGTCGTGGTTTTA 57.669 32.000 0.00 0.00 0.00 1.52
2283 2528 6.210287 TCCAAAAATAAGTGTCGTGGTTTT 57.790 33.333 0.00 0.00 0.00 2.43
2284 2529 5.838531 TCCAAAAATAAGTGTCGTGGTTT 57.161 34.783 0.00 0.00 0.00 3.27
2285 2530 5.584442 GTTCCAAAAATAAGTGTCGTGGTT 58.416 37.500 0.00 0.00 0.00 3.67
2286 2531 4.260866 CGTTCCAAAAATAAGTGTCGTGGT 60.261 41.667 0.00 0.00 0.00 4.16
2287 2532 4.215965 CGTTCCAAAAATAAGTGTCGTGG 58.784 43.478 0.00 0.00 0.00 4.94
2288 2533 4.024725 TCCGTTCCAAAAATAAGTGTCGTG 60.025 41.667 0.00 0.00 0.00 4.35
2289 2534 4.128643 TCCGTTCCAAAAATAAGTGTCGT 58.871 39.130 0.00 0.00 0.00 4.34
2290 2535 4.378046 CCTCCGTTCCAAAAATAAGTGTCG 60.378 45.833 0.00 0.00 0.00 4.35
2291 2536 4.082949 CCCTCCGTTCCAAAAATAAGTGTC 60.083 45.833 0.00 0.00 0.00 3.67
2292 2537 3.824443 CCCTCCGTTCCAAAAATAAGTGT 59.176 43.478 0.00 0.00 0.00 3.55
2293 2538 3.192633 CCCCTCCGTTCCAAAAATAAGTG 59.807 47.826 0.00 0.00 0.00 3.16
2294 2539 3.181426 ACCCCTCCGTTCCAAAAATAAGT 60.181 43.478 0.00 0.00 0.00 2.24
2295 2540 3.427573 ACCCCTCCGTTCCAAAAATAAG 58.572 45.455 0.00 0.00 0.00 1.73
2296 2541 3.529216 ACCCCTCCGTTCCAAAAATAA 57.471 42.857 0.00 0.00 0.00 1.40
2297 2542 4.866327 ATACCCCTCCGTTCCAAAAATA 57.134 40.909 0.00 0.00 0.00 1.40
2298 2543 3.750501 ATACCCCTCCGTTCCAAAAAT 57.249 42.857 0.00 0.00 0.00 1.82
2299 2544 3.529216 AATACCCCTCCGTTCCAAAAA 57.471 42.857 0.00 0.00 0.00 1.94
2300 2545 3.529216 AAATACCCCTCCGTTCCAAAA 57.471 42.857 0.00 0.00 0.00 2.44
2301 2546 4.475747 AGATAAATACCCCTCCGTTCCAAA 59.524 41.667 0.00 0.00 0.00 3.28
2302 2547 4.042174 AGATAAATACCCCTCCGTTCCAA 58.958 43.478 0.00 0.00 0.00 3.53
2303 2548 3.660959 AGATAAATACCCCTCCGTTCCA 58.339 45.455 0.00 0.00 0.00 3.53
2304 2549 4.347292 AGAAGATAAATACCCCTCCGTTCC 59.653 45.833 0.00 0.00 0.00 3.62
2305 2550 5.070047 TCAGAAGATAAATACCCCTCCGTTC 59.930 44.000 0.00 0.00 0.00 3.95
2306 2551 4.966805 TCAGAAGATAAATACCCCTCCGTT 59.033 41.667 0.00 0.00 0.00 4.44
2307 2552 4.344390 GTCAGAAGATAAATACCCCTCCGT 59.656 45.833 0.00 0.00 0.00 4.69
2308 2553 4.589374 AGTCAGAAGATAAATACCCCTCCG 59.411 45.833 0.00 0.00 0.00 4.63
2309 2554 5.221742 CCAGTCAGAAGATAAATACCCCTCC 60.222 48.000 0.00 0.00 0.00 4.30
2310 2555 5.221742 CCCAGTCAGAAGATAAATACCCCTC 60.222 48.000 0.00 0.00 0.00 4.30
2311 2556 4.660771 CCCAGTCAGAAGATAAATACCCCT 59.339 45.833 0.00 0.00 0.00 4.79
2312 2557 4.658901 TCCCAGTCAGAAGATAAATACCCC 59.341 45.833 0.00 0.00 0.00 4.95
2313 2558 5.888982 TCCCAGTCAGAAGATAAATACCC 57.111 43.478 0.00 0.00 0.00 3.69
2314 2559 7.775561 ACATTTCCCAGTCAGAAGATAAATACC 59.224 37.037 0.00 0.00 0.00 2.73
2315 2560 8.616076 CACATTTCCCAGTCAGAAGATAAATAC 58.384 37.037 0.00 0.00 0.00 1.89
2316 2561 8.328758 ACACATTTCCCAGTCAGAAGATAAATA 58.671 33.333 0.00 0.00 0.00 1.40
2317 2562 7.177878 ACACATTTCCCAGTCAGAAGATAAAT 58.822 34.615 0.00 0.00 0.00 1.40
2318 2563 6.542821 ACACATTTCCCAGTCAGAAGATAAA 58.457 36.000 0.00 0.00 0.00 1.40
2319 2564 6.126863 ACACATTTCCCAGTCAGAAGATAA 57.873 37.500 0.00 0.00 0.00 1.75
2320 2565 5.762179 ACACATTTCCCAGTCAGAAGATA 57.238 39.130 0.00 0.00 0.00 1.98
2321 2566 4.647564 ACACATTTCCCAGTCAGAAGAT 57.352 40.909 0.00 0.00 0.00 2.40
2322 2567 4.262894 GGTACACATTTCCCAGTCAGAAGA 60.263 45.833 0.00 0.00 0.00 2.87
2323 2568 4.003648 GGTACACATTTCCCAGTCAGAAG 58.996 47.826 0.00 0.00 0.00 2.85
2324 2569 3.392947 TGGTACACATTTCCCAGTCAGAA 59.607 43.478 0.00 0.00 0.00 3.02
2325 2570 2.976185 TGGTACACATTTCCCAGTCAGA 59.024 45.455 0.00 0.00 0.00 3.27
2326 2571 3.417069 TGGTACACATTTCCCAGTCAG 57.583 47.619 0.00 0.00 0.00 3.51
2345 2590 6.374707 CACAACTTGTGTTTGTGTAGTTTG 57.625 37.500 13.02 0.00 43.08 2.93
2360 2605 8.827677 GGTAAACTATAAGCCTATCACAACTTG 58.172 37.037 0.00 0.00 0.00 3.16
2377 2622 4.406003 CCTCCACAGCTGTAGGTAAACTAT 59.594 45.833 22.72 0.00 33.43 2.12
2383 2628 2.565834 GTTTCCTCCACAGCTGTAGGTA 59.434 50.000 27.45 19.36 0.00 3.08
2394 2639 2.298163 TGACGGTAAGAGTTTCCTCCAC 59.702 50.000 0.00 0.00 38.58 4.02
2404 2660 8.497554 GTGTCTACTATATTCTGACGGTAAGAG 58.502 40.741 0.00 0.00 0.00 2.85
2409 2665 6.120905 ACAGTGTCTACTATATTCTGACGGT 58.879 40.000 0.00 0.00 34.74 4.83
2507 2764 6.037172 CCCTTACCATCATAAACTTTGAGACG 59.963 42.308 0.00 0.00 0.00 4.18
2554 2811 0.250684 TGATGAAACGGGCTTCAGCA 60.251 50.000 9.98 9.98 46.46 4.41
2602 2859 2.038426 TGCCTTTCTCCTTTCGTCATCA 59.962 45.455 0.00 0.00 0.00 3.07
2683 2940 8.923270 TGTACCATCAGATCATCACAATAAGTA 58.077 33.333 0.00 0.00 0.00 2.24
2685 2942 8.718734 CATGTACCATCAGATCATCACAATAAG 58.281 37.037 0.00 0.00 0.00 1.73
2699 2956 3.614092 ACTTCTTGCCATGTACCATCAG 58.386 45.455 0.00 0.00 0.00 2.90
2729 2986 8.076178 CGGAGGGAGTAGCAAAAATAATTAATG 58.924 37.037 0.00 0.00 0.00 1.90
2730 2987 7.778382 ACGGAGGGAGTAGCAAAAATAATTAAT 59.222 33.333 0.00 0.00 0.00 1.40
2737 2994 3.344515 GAACGGAGGGAGTAGCAAAAAT 58.655 45.455 0.00 0.00 0.00 1.82
2738 2995 2.774687 GAACGGAGGGAGTAGCAAAAA 58.225 47.619 0.00 0.00 0.00 1.94
2747 3005 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
2748 3006 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
2749 3007 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
2750 3008 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
2751 3009 3.367025 GTGACAAGTAATTCCGAACGGAG 59.633 47.826 15.34 5.60 46.06 4.63
2752 3010 3.243805 TGTGACAAGTAATTCCGAACGGA 60.244 43.478 12.04 12.04 43.52 4.69
2753 3011 3.061322 TGTGACAAGTAATTCCGAACGG 58.939 45.455 6.94 6.94 0.00 4.44
2754 3012 4.718858 TTGTGACAAGTAATTCCGAACG 57.281 40.909 0.00 0.00 0.00 3.95
2755 3013 7.096230 CCATTTTTGTGACAAGTAATTCCGAAC 60.096 37.037 0.00 0.00 0.00 3.95
2756 3014 6.920758 CCATTTTTGTGACAAGTAATTCCGAA 59.079 34.615 0.00 0.00 0.00 4.30
2757 3015 6.263392 TCCATTTTTGTGACAAGTAATTCCGA 59.737 34.615 0.00 0.00 0.00 4.55
2758 3016 6.442952 TCCATTTTTGTGACAAGTAATTCCG 58.557 36.000 0.00 0.00 0.00 4.30
2759 3017 7.872483 ACATCCATTTTTGTGACAAGTAATTCC 59.128 33.333 0.00 0.00 0.00 3.01
2760 3018 8.816640 ACATCCATTTTTGTGACAAGTAATTC 57.183 30.769 0.00 0.00 0.00 2.17
2763 3021 9.295825 AGATACATCCATTTTTGTGACAAGTAA 57.704 29.630 0.00 0.00 0.00 2.24
2764 3022 8.862325 AGATACATCCATTTTTGTGACAAGTA 57.138 30.769 0.00 0.00 0.00 2.24
2765 3023 7.765695 AGATACATCCATTTTTGTGACAAGT 57.234 32.000 0.00 0.00 0.00 3.16
2766 3024 8.729756 TGTAGATACATCCATTTTTGTGACAAG 58.270 33.333 0.00 0.00 0.00 3.16
2767 3025 8.628630 TGTAGATACATCCATTTTTGTGACAA 57.371 30.769 0.00 0.00 0.00 3.18
2768 3026 8.511321 GTTGTAGATACATCCATTTTTGTGACA 58.489 33.333 0.00 0.00 35.89 3.58
2769 3027 8.730680 AGTTGTAGATACATCCATTTTTGTGAC 58.269 33.333 0.00 0.00 35.89 3.67
2770 3028 8.862325 AGTTGTAGATACATCCATTTTTGTGA 57.138 30.769 0.00 0.00 35.89 3.58
2801 3059 9.553064 GTCCAAGAAATGAATGTATCTAGATGT 57.447 33.333 15.79 0.00 0.00 3.06
2802 3060 8.706936 CGTCCAAGAAATGAATGTATCTAGATG 58.293 37.037 15.79 0.00 0.00 2.90
2803 3061 8.642432 TCGTCCAAGAAATGAATGTATCTAGAT 58.358 33.333 10.73 10.73 0.00 1.98
2804 3062 8.007405 TCGTCCAAGAAATGAATGTATCTAGA 57.993 34.615 0.00 0.00 0.00 2.43
2805 3063 7.923344 ACTCGTCCAAGAAATGAATGTATCTAG 59.077 37.037 0.00 0.00 0.00 2.43
2806 3064 7.782049 ACTCGTCCAAGAAATGAATGTATCTA 58.218 34.615 0.00 0.00 0.00 1.98
2807 3065 6.644347 ACTCGTCCAAGAAATGAATGTATCT 58.356 36.000 0.00 0.00 0.00 1.98
2808 3066 6.910536 ACTCGTCCAAGAAATGAATGTATC 57.089 37.500 0.00 0.00 0.00 2.24
2809 3067 8.964476 ATTACTCGTCCAAGAAATGAATGTAT 57.036 30.769 0.00 0.00 0.00 2.29
2810 3068 8.786826 AATTACTCGTCCAAGAAATGAATGTA 57.213 30.769 0.00 0.00 0.00 2.29
2811 3069 7.148239 GGAATTACTCGTCCAAGAAATGAATGT 60.148 37.037 0.00 0.00 33.79 2.71
2812 3070 7.189512 GGAATTACTCGTCCAAGAAATGAATG 58.810 38.462 0.00 0.00 33.79 2.67
2813 3071 6.037172 CGGAATTACTCGTCCAAGAAATGAAT 59.963 38.462 0.00 0.00 33.10 2.57
2814 3072 5.350365 CGGAATTACTCGTCCAAGAAATGAA 59.650 40.000 0.00 0.00 33.10 2.57
2815 3073 4.868171 CGGAATTACTCGTCCAAGAAATGA 59.132 41.667 0.00 0.00 33.10 2.57
2816 3074 4.868171 TCGGAATTACTCGTCCAAGAAATG 59.132 41.667 0.00 0.00 33.10 2.32
2817 3075 5.080969 TCGGAATTACTCGTCCAAGAAAT 57.919 39.130 0.00 0.00 33.10 2.17
2818 3076 4.524316 TCGGAATTACTCGTCCAAGAAA 57.476 40.909 0.00 0.00 33.10 2.52
2819 3077 4.240096 GTTCGGAATTACTCGTCCAAGAA 58.760 43.478 0.00 0.00 33.10 2.52
2820 3078 3.671433 CGTTCGGAATTACTCGTCCAAGA 60.671 47.826 0.00 0.00 33.10 3.02
2821 3079 2.597305 CGTTCGGAATTACTCGTCCAAG 59.403 50.000 0.00 0.00 33.10 3.61
2822 3080 2.598589 CGTTCGGAATTACTCGTCCAA 58.401 47.619 0.00 0.00 33.10 3.53
2823 3081 1.135315 CCGTTCGGAATTACTCGTCCA 60.135 52.381 5.19 0.00 33.10 4.02
2824 3082 1.133025 TCCGTTCGGAATTACTCGTCC 59.867 52.381 11.66 0.00 0.00 4.79
2825 3083 2.448219 CTCCGTTCGGAATTACTCGTC 58.552 52.381 14.79 0.00 33.41 4.20
2826 3084 1.133790 CCTCCGTTCGGAATTACTCGT 59.866 52.381 14.79 0.00 33.41 4.18
2827 3085 1.535437 CCCTCCGTTCGGAATTACTCG 60.535 57.143 14.79 1.97 33.41 4.18
2828 3086 1.753073 TCCCTCCGTTCGGAATTACTC 59.247 52.381 14.79 0.00 33.41 2.59
2829 3087 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
2830 3088 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
2831 3089 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
2832 3090 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
2833 3091 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
2834 3092 0.038744 AGTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
2835 3093 0.038744 AAGTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.00 4.55
2836 3094 0.172803 CAAGTACTCCCTCCGTTCGG 59.827 60.000 4.74 4.74 0.00 4.30
2837 3095 0.886563 ACAAGTACTCCCTCCGTTCG 59.113 55.000 0.00 0.00 0.00 3.95
2838 3096 2.169330 AGACAAGTACTCCCTCCGTTC 58.831 52.381 0.00 0.00 0.00 3.95
2839 3097 2.305858 AGACAAGTACTCCCTCCGTT 57.694 50.000 0.00 0.00 0.00 4.44
2840 3098 2.305858 AAGACAAGTACTCCCTCCGT 57.694 50.000 0.00 0.00 0.00 4.69
2841 3099 4.796038 TTTAAGACAAGTACTCCCTCCG 57.204 45.455 0.00 0.00 0.00 4.63
2842 3100 5.189145 TGGATTTAAGACAAGTACTCCCTCC 59.811 44.000 0.00 0.00 0.00 4.30
2843 3101 6.295719 TGGATTTAAGACAAGTACTCCCTC 57.704 41.667 0.00 0.00 0.00 4.30
2844 3102 6.215636 ACATGGATTTAAGACAAGTACTCCCT 59.784 38.462 0.00 0.00 0.00 4.20
2845 3103 6.415573 ACATGGATTTAAGACAAGTACTCCC 58.584 40.000 0.00 0.00 0.00 4.30
2846 3104 7.711339 CCTACATGGATTTAAGACAAGTACTCC 59.289 40.741 0.00 0.00 38.35 3.85
2847 3105 8.258708 ACCTACATGGATTTAAGACAAGTACTC 58.741 37.037 0.00 0.00 39.71 2.59
2848 3106 8.147244 ACCTACATGGATTTAAGACAAGTACT 57.853 34.615 0.00 0.00 39.71 2.73
2849 3107 8.258708 AGACCTACATGGATTTAAGACAAGTAC 58.741 37.037 0.00 0.00 39.71 2.73
2850 3108 8.258007 CAGACCTACATGGATTTAAGACAAGTA 58.742 37.037 0.00 0.00 39.71 2.24
2851 3109 7.106239 CAGACCTACATGGATTTAAGACAAGT 58.894 38.462 0.00 0.00 39.71 3.16
2852 3110 6.037610 GCAGACCTACATGGATTTAAGACAAG 59.962 42.308 0.00 0.00 39.71 3.16
2864 3122 3.895232 AACACTAGCAGACCTACATGG 57.105 47.619 0.00 0.00 42.93 3.66
2895 3153 7.819900 AGAAGAAAAATCTGCTATGTAACTCGT 59.180 33.333 0.00 0.00 0.00 4.18
2896 3154 8.190888 AGAAGAAAAATCTGCTATGTAACTCG 57.809 34.615 0.00 0.00 0.00 4.18
2953 3216 6.166984 TCACAAGGATAAAGAGATGCTAGG 57.833 41.667 0.00 0.00 0.00 3.02
2960 3223 5.003804 GGTTTGCTCACAAGGATAAAGAGA 58.996 41.667 0.00 0.00 37.04 3.10
2961 3224 4.156739 GGGTTTGCTCACAAGGATAAAGAG 59.843 45.833 0.00 0.00 37.04 2.85
2966 3229 3.737559 ATGGGTTTGCTCACAAGGATA 57.262 42.857 0.00 0.00 37.04 2.59
2970 3233 5.473504 GGGTATATATGGGTTTGCTCACAAG 59.526 44.000 0.00 0.00 37.04 3.16
3000 3263 3.550820 CGTGTTGGATGATAATCCCCAA 58.449 45.455 6.64 0.00 39.99 4.12
3018 3281 1.669115 CCAGTCCAGGAACAGCGTG 60.669 63.158 0.00 0.00 0.00 5.34
3019 3282 2.743718 CCAGTCCAGGAACAGCGT 59.256 61.111 0.00 0.00 0.00 5.07
3020 3283 2.046892 CCCAGTCCAGGAACAGCG 60.047 66.667 0.00 0.00 0.00 5.18
3021 3284 2.360475 GCCCAGTCCAGGAACAGC 60.360 66.667 0.00 0.00 0.00 4.40
3022 3285 2.352805 GGCCCAGTCCAGGAACAG 59.647 66.667 0.00 0.00 0.00 3.16
3030 3293 3.712907 TTACCGCTGGCCCAGTCC 61.713 66.667 13.35 0.00 33.43 3.85
3031 3294 2.436115 GTTACCGCTGGCCCAGTC 60.436 66.667 13.35 3.82 33.43 3.51
3042 3305 2.690786 TGTTCCTGAATTCCGTTACCG 58.309 47.619 2.27 0.00 0.00 4.02
3044 3307 3.816523 TGGTTGTTCCTGAATTCCGTTAC 59.183 43.478 2.27 0.00 37.07 2.50
3048 3319 3.367292 CCATTGGTTGTTCCTGAATTCCG 60.367 47.826 2.27 0.00 37.07 4.30
3051 3322 4.840115 ACATCCATTGGTTGTTCCTGAATT 59.160 37.500 12.69 0.00 32.38 2.17
3080 3351 5.799213 AGGTTCCAGTTAGAATCTGACTTG 58.201 41.667 4.85 2.56 35.85 3.16
3094 3365 2.505819 GTGATACATGGGAGGTTCCAGT 59.494 50.000 0.00 0.00 40.56 4.00
3154 3427 9.261035 ACTTTTGAATCTCTCTATGTTCTCCTA 57.739 33.333 0.00 0.00 0.00 2.94
3155 3428 8.144862 ACTTTTGAATCTCTCTATGTTCTCCT 57.855 34.615 0.00 0.00 0.00 3.69
3156 3429 8.257306 AGACTTTTGAATCTCTCTATGTTCTCC 58.743 37.037 0.00 0.00 0.00 3.71
3159 3432 9.213799 ACAAGACTTTTGAATCTCTCTATGTTC 57.786 33.333 0.00 0.00 0.00 3.18
3189 3464 9.102757 GCACTCTCAATTTCAAGTTATCATAGA 57.897 33.333 0.00 0.00 0.00 1.98
3199 3474 4.070716 ACCTCAGCACTCTCAATTTCAAG 58.929 43.478 0.00 0.00 0.00 3.02
3227 3502 4.591321 TCAGGATTTGCAGGAATACCTT 57.409 40.909 0.00 0.00 45.36 3.50
3229 3504 5.659440 TTTTCAGGATTTGCAGGAATACC 57.341 39.130 0.00 0.00 0.00 2.73
3260 3539 2.630158 CCTGAGAAGCCTGATCAACAG 58.370 52.381 0.00 0.00 45.36 3.16
3262 3541 1.339438 TGCCTGAGAAGCCTGATCAAC 60.339 52.381 0.00 0.00 0.00 3.18
3263 3542 0.986527 TGCCTGAGAAGCCTGATCAA 59.013 50.000 0.00 0.00 0.00 2.57
3265 3544 1.595466 CATGCCTGAGAAGCCTGATC 58.405 55.000 0.00 0.00 0.00 2.92
3339 3619 3.003173 TCGGCCCAAGCAGCTACT 61.003 61.111 0.00 0.00 42.56 2.57
3425 3705 3.459598 ACCATAGTACACCATGCAGGATT 59.540 43.478 0.00 0.00 41.22 3.01
3575 3855 1.479730 TCTCTCTTGCGCATGATGTCT 59.520 47.619 24.23 0.00 0.00 3.41
3730 4022 2.041153 CGAAACCTTGCAGGGCTTT 58.959 52.632 16.02 14.07 40.58 3.51
3739 4031 4.319549 GGAAGTAACTTCAGCGAAACCTTG 60.320 45.833 0.00 0.00 41.77 3.61
3766 4058 3.862267 GCCTTATATACTGCAGCTCGATG 59.138 47.826 15.27 0.00 0.00 3.84
3767 4059 3.766591 AGCCTTATATACTGCAGCTCGAT 59.233 43.478 15.27 4.94 0.00 3.59
3768 4060 3.157881 AGCCTTATATACTGCAGCTCGA 58.842 45.455 15.27 0.00 0.00 4.04
3769 4061 3.584406 AGCCTTATATACTGCAGCTCG 57.416 47.619 15.27 0.00 0.00 5.03
3770 4062 5.866633 CACTTAGCCTTATATACTGCAGCTC 59.133 44.000 15.27 0.00 0.00 4.09
3771 4063 5.540337 TCACTTAGCCTTATATACTGCAGCT 59.460 40.000 15.27 4.97 0.00 4.24
3772 4064 5.784177 TCACTTAGCCTTATATACTGCAGC 58.216 41.667 15.27 0.00 0.00 5.25
3793 4085 1.830408 CCAACAAGGCCGGGTTTCA 60.830 57.895 11.75 0.00 0.00 2.69
3832 4124 6.139679 AGGATTTCCTGATCCAACAGTTAA 57.860 37.500 0.00 0.00 46.61 2.01
3993 4296 8.615211 CATCTTGCATGTAACAAGTATACACAT 58.385 33.333 5.50 2.93 43.97 3.21
4143 4449 2.158534 ACAGGTAATGAAACAGTGCCCA 60.159 45.455 0.00 0.00 34.95 5.36
4169 4475 5.007039 ACAAGCGAATCATGCATTGTAGTAG 59.993 40.000 0.00 0.00 34.37 2.57
4218 4524 7.935755 ACTTGGTAGTATTCATCATCATTCAGG 59.064 37.037 0.00 0.00 31.21 3.86
4261 4567 3.748048 AGGCATGCGACAATGTGTATATC 59.252 43.478 12.44 0.00 0.00 1.63
4304 4610 1.630878 AGAGGAATTGGAAGAAGCGGT 59.369 47.619 0.00 0.00 0.00 5.68
4306 4612 2.977914 TGAGAGGAATTGGAAGAAGCG 58.022 47.619 0.00 0.00 0.00 4.68
4358 4664 6.929606 AGGCTCCGCGATATAAATATATTTCC 59.070 38.462 13.95 5.24 0.00 3.13
4375 4682 1.411493 CGTTTTCGTAGAGGCTCCGC 61.411 60.000 11.71 3.24 38.43 5.54
4383 4690 2.587612 GCACATTGCGTTTTCGTAGA 57.412 45.000 0.00 0.00 46.03 2.59
4401 4708 6.098679 TGTGTGCATCCATAATGTTTTTAGC 58.901 36.000 0.00 0.00 37.71 3.09
4414 4721 1.489481 TTTTGGGTTGTGTGCATCCA 58.511 45.000 0.00 0.00 36.44 3.41
4415 4722 2.611225 TTTTTGGGTTGTGTGCATCC 57.389 45.000 0.00 0.00 34.51 3.51
4435 4742 5.618561 CGGATCGTTCGATTTTTCTTCTTT 58.381 37.500 9.05 0.00 0.00 2.52
4436 4743 4.435651 GCGGATCGTTCGATTTTTCTTCTT 60.436 41.667 9.05 0.00 0.00 2.52
4437 4744 3.062234 GCGGATCGTTCGATTTTTCTTCT 59.938 43.478 9.05 0.00 0.00 2.85
4447 4754 1.028330 ACTGTAGGCGGATCGTTCGA 61.028 55.000 0.00 0.00 0.00 3.71
4450 4757 1.067212 GATCACTGTAGGCGGATCGTT 59.933 52.381 0.00 0.00 0.00 3.85
4458 4765 6.500684 TTCAAAGAATTGATCACTGTAGGC 57.499 37.500 0.00 0.00 44.70 3.93
4459 4766 7.025963 GCTTTCAAAGAATTGATCACTGTAGG 58.974 38.462 0.00 0.00 44.70 3.18
4480 4787 3.732212 GCTTGTGAAGAATTTGGGCTTT 58.268 40.909 0.00 0.00 0.00 3.51
4484 4856 2.665519 CGTCGCTTGTGAAGAATTTGGG 60.666 50.000 0.00 0.00 0.00 4.12
4494 4866 1.664649 CTGAAGGCGTCGCTTGTGA 60.665 57.895 18.11 0.00 0.00 3.58
4509 4881 2.997980 TGTGCACTGTTTCCTTTCTGA 58.002 42.857 19.41 0.00 0.00 3.27
4516 4888 0.317020 GACGCTTGTGCACTGTTTCC 60.317 55.000 19.41 0.00 39.64 3.13
4537 4909 2.425592 CCTATGATTGGGCGGCGA 59.574 61.111 12.98 0.00 0.00 5.54
4546 4918 4.044065 TCCAGGGTGAAAACACCTATGATT 59.956 41.667 17.02 0.00 44.41 2.57
4565 4942 0.460987 AGAGCGCGGATTTTCTCCAG 60.461 55.000 8.83 0.00 45.24 3.86
4638 5015 2.513666 GATCGGGCGGCAATGACA 60.514 61.111 12.47 0.00 0.00 3.58
4640 5017 0.320683 CTATGATCGGGCGGCAATGA 60.321 55.000 12.47 5.72 0.00 2.57
4641 5018 1.300971 CCTATGATCGGGCGGCAATG 61.301 60.000 12.47 0.00 0.00 2.82
4642 5019 1.003355 CCTATGATCGGGCGGCAAT 60.003 57.895 12.47 3.11 0.00 3.56
4662 5070 7.867909 GGATTTTCTTCAGGGTGAAAACTTAAG 59.132 37.037 0.00 0.00 42.49 1.85
4666 5074 4.278419 CGGATTTTCTTCAGGGTGAAAACT 59.722 41.667 0.00 0.00 42.49 2.66
4671 5079 1.821216 GCGGATTTTCTTCAGGGTGA 58.179 50.000 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.