Multiple sequence alignment - TraesCS2D01G167300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G167300 chr2D 100.000 6570 0 0 1 6570 111148602 111155171 0.000000e+00 12133
1 TraesCS2D01G167300 chr2D 96.124 129 5 0 1 129 600160853 600160981 1.860000e-50 211
2 TraesCS2D01G167300 chr2B 93.939 5808 205 63 227 5965 160899841 160905570 0.000000e+00 8639
3 TraesCS2D01G167300 chr2B 84.507 426 25 15 5966 6362 160905599 160906012 3.720000e-102 383
4 TraesCS2D01G167300 chr2A 94.727 5348 197 37 635 5941 108266677 108271980 0.000000e+00 8235
5 TraesCS2D01G167300 chr2A 84.765 361 23 15 5966 6295 108272067 108272426 3.800000e-87 333
6 TraesCS2D01G167300 chr2A 94.595 148 7 1 214 360 108266025 108266172 1.840000e-55 228
7 TraesCS2D01G167300 chr2A 86.301 219 19 10 420 629 108266174 108266390 1.840000e-55 228
8 TraesCS2D01G167300 chr5D 96.154 130 5 0 1 130 335778367 335778496 5.160000e-51 213
9 TraesCS2D01G167300 chr5D 87.662 154 15 3 6 159 373953058 373952909 6.770000e-40 176
10 TraesCS2D01G167300 chr3D 96.154 130 5 0 1 130 161915465 161915594 5.160000e-51 213
11 TraesCS2D01G167300 chr3D 93.846 130 7 1 3 131 604180808 604180679 1.870000e-45 195
12 TraesCS2D01G167300 chr7D 96.094 128 5 0 1 128 6967571 6967698 6.680000e-50 209
13 TraesCS2D01G167300 chr6B 94.488 127 7 0 3 129 20776995 20777121 5.200000e-46 196
14 TraesCS2D01G167300 chr6B 88.462 156 17 1 3 158 701868138 701867984 3.130000e-43 187
15 TraesCS2D01G167300 chr6D 94.444 126 7 0 3 128 90890407 90890282 1.870000e-45 195


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G167300 chr2D 111148602 111155171 6569 False 12133 12133 100.000 1 6570 1 chr2D.!!$F1 6569
1 TraesCS2D01G167300 chr2B 160899841 160906012 6171 False 4511 8639 89.223 227 6362 2 chr2B.!!$F1 6135
2 TraesCS2D01G167300 chr2A 108266025 108272426 6401 False 2256 8235 90.097 214 6295 4 chr2A.!!$F1 6081

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
279 280 0.880441 TGACATGTGATTTGGTGCCG 59.120 50.000 1.15 0.00 0.00 5.69 F
452 455 1.212935 ACCCTGCATCTCATGTTACCC 59.787 52.381 0.00 0.00 0.00 3.69 F
1875 2186 1.288188 TTGGGATGATGCCTGAGACA 58.712 50.000 4.19 0.00 0.00 3.41 F
2083 2394 1.520787 GCCTTGCCAATGCTGATGC 60.521 57.895 0.00 0.00 38.71 3.91 F
2435 2746 2.035237 TTGGTCTTTCTCGCGTGGGT 62.035 55.000 5.77 0.00 0.00 4.51 F
2933 3257 1.083489 TTTGCGTTCTTGGGATAGCG 58.917 50.000 0.00 0.00 0.00 4.26 F
3631 3955 0.179202 CACAGAGTCGAGCGTCTCAG 60.179 60.000 16.77 12.22 33.79 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1842 2153 0.254747 TCCCAAAGAGGCCATTACCG 59.745 55.000 5.01 0.00 35.39 4.02 R
2425 2736 0.881159 TTGTAAACCACCCACGCGAG 60.881 55.000 15.93 4.16 0.00 5.03 R
2857 3181 0.583438 CAACTGAGACACACTTGCCG 59.417 55.000 0.00 0.00 0.00 5.69 R
2930 3254 1.204941 GTCAATCACCTCCACTACGCT 59.795 52.381 0.00 0.00 0.00 5.07 R
3631 3955 2.171448 ACCAGCCTTATGTCCATGAGAC 59.829 50.000 0.00 0.39 46.51 3.36 R
4924 5251 0.393077 CGGTACCCCAATGCTCCTAG 59.607 60.000 6.25 0.00 0.00 3.02 R
5584 5944 0.038166 ACTGTGCTGGGTAACATGGG 59.962 55.000 0.00 0.00 39.74 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.930848 GGTTCCACTAGAAACCACATACG 59.069 47.826 16.40 0.00 36.04 3.06
23 24 3.880047 TCCACTAGAAACCACATACGG 57.120 47.619 0.00 0.00 0.00 4.02
24 25 3.433343 TCCACTAGAAACCACATACGGA 58.567 45.455 0.00 0.00 0.00 4.69
25 26 4.028131 TCCACTAGAAACCACATACGGAT 58.972 43.478 0.00 0.00 0.00 4.18
26 27 4.119862 CCACTAGAAACCACATACGGATG 58.880 47.826 5.94 5.94 39.16 3.51
27 28 9.877542 GTTCCACTAGAAACCACATACGGATGT 62.878 44.444 7.68 7.68 40.79 3.06
28 29 5.163488 CCACTAGAAACCACATACGGATGTA 60.163 44.000 14.23 0.00 44.82 2.29
29 30 6.462487 CCACTAGAAACCACATACGGATGTAT 60.462 42.308 14.23 1.38 44.82 2.29
30 31 7.255695 CCACTAGAAACCACATACGGATGTATA 60.256 40.741 14.23 0.00 44.82 1.47
31 32 8.304596 CACTAGAAACCACATACGGATGTATAT 58.695 37.037 14.23 0.00 44.82 0.86
32 33 9.524496 ACTAGAAACCACATACGGATGTATATA 57.476 33.333 14.23 1.54 44.82 0.86
34 35 8.645814 AGAAACCACATACGGATGTATATAGA 57.354 34.615 14.23 0.00 44.82 1.98
35 36 9.256228 AGAAACCACATACGGATGTATATAGAT 57.744 33.333 14.23 0.00 44.82 1.98
78 79 9.624697 TTCATTCATTTTGCTTTGTATGTAGTC 57.375 29.630 0.00 0.00 0.00 2.59
79 80 8.243426 TCATTCATTTTGCTTTGTATGTAGTCC 58.757 33.333 0.00 0.00 0.00 3.85
80 81 7.517614 TTCATTTTGCTTTGTATGTAGTCCA 57.482 32.000 0.00 0.00 0.00 4.02
81 82 7.701539 TCATTTTGCTTTGTATGTAGTCCAT 57.298 32.000 0.00 0.00 37.58 3.41
82 83 7.761409 TCATTTTGCTTTGTATGTAGTCCATC 58.239 34.615 0.00 0.00 34.86 3.51
83 84 7.611467 TCATTTTGCTTTGTATGTAGTCCATCT 59.389 33.333 0.00 0.00 34.86 2.90
84 85 8.892723 CATTTTGCTTTGTATGTAGTCCATCTA 58.107 33.333 0.00 0.00 34.86 1.98
85 86 8.492673 TTTTGCTTTGTATGTAGTCCATCTAG 57.507 34.615 0.00 0.00 34.86 2.43
86 87 6.791867 TGCTTTGTATGTAGTCCATCTAGT 57.208 37.500 0.00 0.00 34.86 2.57
87 88 6.573434 TGCTTTGTATGTAGTCCATCTAGTG 58.427 40.000 0.00 0.00 34.86 2.74
124 125 8.855804 AAGACTTATATTTAGGAACTGAGGGA 57.144 34.615 0.00 0.00 41.52 4.20
125 126 8.485578 AGACTTATATTTAGGAACTGAGGGAG 57.514 38.462 0.00 0.00 41.52 4.30
126 127 8.068733 AGACTTATATTTAGGAACTGAGGGAGT 58.931 37.037 0.00 0.00 41.52 3.85
127 128 9.364653 GACTTATATTTAGGAACTGAGGGAGTA 57.635 37.037 0.00 0.00 41.52 2.59
128 129 9.900112 ACTTATATTTAGGAACTGAGGGAGTAT 57.100 33.333 0.00 0.00 41.52 2.12
133 134 8.709272 ATTTAGGAACTGAGGGAGTATACTAC 57.291 38.462 6.55 6.55 41.52 2.73
134 135 5.728937 AGGAACTGAGGGAGTATACTACA 57.271 43.478 17.06 8.86 37.18 2.74
135 136 6.088541 AGGAACTGAGGGAGTATACTACAA 57.911 41.667 17.06 1.21 37.18 2.41
136 137 5.892686 AGGAACTGAGGGAGTATACTACAAC 59.107 44.000 17.06 10.06 37.18 3.32
137 138 5.655532 GGAACTGAGGGAGTATACTACAACA 59.344 44.000 17.06 13.71 33.09 3.33
138 139 6.324254 GGAACTGAGGGAGTATACTACAACAT 59.676 42.308 17.06 2.67 33.09 2.71
139 140 6.716934 ACTGAGGGAGTATACTACAACATG 57.283 41.667 17.06 11.13 30.86 3.21
140 141 6.432581 ACTGAGGGAGTATACTACAACATGA 58.567 40.000 17.06 0.00 30.86 3.07
141 142 7.069986 ACTGAGGGAGTATACTACAACATGAT 58.930 38.462 17.06 2.99 30.86 2.45
142 143 7.565398 ACTGAGGGAGTATACTACAACATGATT 59.435 37.037 17.06 0.00 30.86 2.57
143 144 7.952671 TGAGGGAGTATACTACAACATGATTC 58.047 38.462 17.06 0.00 0.00 2.52
144 145 7.785028 TGAGGGAGTATACTACAACATGATTCT 59.215 37.037 17.06 1.20 0.00 2.40
145 146 7.957002 AGGGAGTATACTACAACATGATTCTG 58.043 38.462 17.06 0.00 0.00 3.02
146 147 7.565398 AGGGAGTATACTACAACATGATTCTGT 59.435 37.037 17.06 0.00 0.00 3.41
147 148 8.204836 GGGAGTATACTACAACATGATTCTGTT 58.795 37.037 17.06 0.00 39.91 3.16
148 149 9.601217 GGAGTATACTACAACATGATTCTGTTT 57.399 33.333 10.44 0.00 37.25 2.83
179 180 9.705290 TTTAATTTTCCTTTCTTGAATAGGTGC 57.295 29.630 0.00 0.00 0.00 5.01
180 181 5.722021 TTTTCCTTTCTTGAATAGGTGCC 57.278 39.130 0.00 0.00 0.00 5.01
181 182 4.380843 TTCCTTTCTTGAATAGGTGCCA 57.619 40.909 0.00 0.00 0.00 4.92
182 183 4.591321 TCCTTTCTTGAATAGGTGCCAT 57.409 40.909 0.00 0.00 0.00 4.40
183 184 5.708736 TCCTTTCTTGAATAGGTGCCATA 57.291 39.130 0.00 0.00 0.00 2.74
184 185 6.266131 TCCTTTCTTGAATAGGTGCCATAT 57.734 37.500 0.00 0.00 0.00 1.78
185 186 6.299141 TCCTTTCTTGAATAGGTGCCATATC 58.701 40.000 0.00 0.00 0.00 1.63
186 187 5.180117 CCTTTCTTGAATAGGTGCCATATCG 59.820 44.000 0.00 0.00 0.00 2.92
187 188 4.271696 TCTTGAATAGGTGCCATATCGG 57.728 45.455 0.00 0.00 38.11 4.18
188 189 3.901222 TCTTGAATAGGTGCCATATCGGA 59.099 43.478 0.00 0.00 36.56 4.55
189 190 3.961480 TGAATAGGTGCCATATCGGAG 57.039 47.619 0.00 0.00 36.56 4.63
190 191 3.506398 TGAATAGGTGCCATATCGGAGA 58.494 45.455 0.00 0.00 45.75 3.71
191 192 3.511540 TGAATAGGTGCCATATCGGAGAG 59.488 47.826 0.00 0.00 43.63 3.20
192 193 2.971901 TAGGTGCCATATCGGAGAGA 57.028 50.000 0.00 0.00 43.63 3.10
193 194 2.088104 AGGTGCCATATCGGAGAGAA 57.912 50.000 0.00 0.00 43.63 2.87
194 195 2.398588 AGGTGCCATATCGGAGAGAAA 58.601 47.619 0.00 0.00 43.63 2.52
195 196 2.771943 AGGTGCCATATCGGAGAGAAAA 59.228 45.455 0.00 0.00 43.63 2.29
196 197 2.872858 GGTGCCATATCGGAGAGAAAAC 59.127 50.000 0.00 0.00 43.63 2.43
197 198 3.432326 GGTGCCATATCGGAGAGAAAACT 60.432 47.826 0.00 0.00 43.63 2.66
198 199 3.557595 GTGCCATATCGGAGAGAAAACTG 59.442 47.826 0.00 0.00 43.63 3.16
199 200 3.450817 TGCCATATCGGAGAGAAAACTGA 59.549 43.478 0.00 0.00 43.63 3.41
200 201 4.081142 TGCCATATCGGAGAGAAAACTGAA 60.081 41.667 0.00 0.00 43.63 3.02
201 202 4.271291 GCCATATCGGAGAGAAAACTGAAC 59.729 45.833 0.00 0.00 43.63 3.18
202 203 5.419542 CCATATCGGAGAGAAAACTGAACA 58.580 41.667 0.00 0.00 43.63 3.18
203 204 6.051717 CCATATCGGAGAGAAAACTGAACAT 58.948 40.000 0.00 0.00 43.63 2.71
204 205 6.540189 CCATATCGGAGAGAAAACTGAACATT 59.460 38.462 0.00 0.00 43.63 2.71
205 206 7.066284 CCATATCGGAGAGAAAACTGAACATTT 59.934 37.037 0.00 0.00 43.63 2.32
206 207 5.924475 TCGGAGAGAAAACTGAACATTTC 57.076 39.130 0.00 0.00 36.11 2.17
207 208 5.611374 TCGGAGAGAAAACTGAACATTTCT 58.389 37.500 0.72 0.72 45.85 2.52
208 209 6.055588 TCGGAGAGAAAACTGAACATTTCTT 58.944 36.000 2.66 0.00 43.86 2.52
209 210 6.202954 TCGGAGAGAAAACTGAACATTTCTTC 59.797 38.462 2.66 3.34 43.86 2.87
210 211 6.203723 CGGAGAGAAAACTGAACATTTCTTCT 59.796 38.462 2.66 2.41 43.86 2.85
211 212 7.358830 GGAGAGAAAACTGAACATTTCTTCTG 58.641 38.462 2.66 0.00 43.86 3.02
212 213 6.733145 AGAGAAAACTGAACATTTCTTCTGC 58.267 36.000 2.66 0.00 43.86 4.26
213 214 6.545298 AGAGAAAACTGAACATTTCTTCTGCT 59.455 34.615 2.66 0.00 43.86 4.24
214 215 7.067981 AGAGAAAACTGAACATTTCTTCTGCTT 59.932 33.333 2.66 0.00 43.86 3.91
215 216 7.550712 AGAAAACTGAACATTTCTTCTGCTTT 58.449 30.769 0.00 0.00 41.79 3.51
216 217 8.686334 AGAAAACTGAACATTTCTTCTGCTTTA 58.314 29.630 0.00 0.00 41.79 1.85
217 218 9.468532 GAAAACTGAACATTTCTTCTGCTTTAT 57.531 29.630 0.00 0.00 33.72 1.40
218 219 8.807667 AAACTGAACATTTCTTCTGCTTTATG 57.192 30.769 0.00 0.00 0.00 1.90
219 220 6.917533 ACTGAACATTTCTTCTGCTTTATGG 58.082 36.000 0.00 0.00 0.00 2.74
220 221 6.491403 ACTGAACATTTCTTCTGCTTTATGGT 59.509 34.615 0.00 0.00 0.00 3.55
221 222 7.665559 ACTGAACATTTCTTCTGCTTTATGGTA 59.334 33.333 0.00 0.00 0.00 3.25
222 223 7.816640 TGAACATTTCTTCTGCTTTATGGTAC 58.183 34.615 0.00 0.00 0.00 3.34
223 224 6.759497 ACATTTCTTCTGCTTTATGGTACC 57.241 37.500 4.43 4.43 0.00 3.34
224 225 5.354234 ACATTTCTTCTGCTTTATGGTACCG 59.646 40.000 7.57 0.00 0.00 4.02
225 226 4.546829 TTCTTCTGCTTTATGGTACCGT 57.453 40.909 12.27 12.27 0.00 4.83
232 233 5.996513 TCTGCTTTATGGTACCGTTTTGTTA 59.003 36.000 12.97 0.00 0.00 2.41
236 237 7.808856 TGCTTTATGGTACCGTTTTGTTAAATC 59.191 33.333 12.97 2.15 0.00 2.17
279 280 0.880441 TGACATGTGATTTGGTGCCG 59.120 50.000 1.15 0.00 0.00 5.69
292 293 3.351794 TGGTGCCGTCCATTTATAACA 57.648 42.857 0.00 0.00 31.96 2.41
391 392 7.219917 CACTCGAGACATTTTCTTCTCTCATAC 59.780 40.741 21.68 0.00 36.82 2.39
417 420 3.034924 AAAAATCCAGCACGCAGGA 57.965 47.368 5.56 5.56 36.07 3.86
448 451 1.340405 GGTCACCCTGCATCTCATGTT 60.340 52.381 0.00 0.00 0.00 2.71
450 453 2.939103 GTCACCCTGCATCTCATGTTAC 59.061 50.000 0.00 0.00 0.00 2.50
452 455 1.212935 ACCCTGCATCTCATGTTACCC 59.787 52.381 0.00 0.00 0.00 3.69
466 471 4.396357 TGTTACCCTTTTCATGACCCAT 57.604 40.909 0.00 0.00 0.00 4.00
522 540 8.462811 TGTAAAACACATGAAGAAAACTAGCAA 58.537 29.630 0.00 0.00 30.04 3.91
524 542 6.699575 AACACATGAAGAAAACTAGCAACT 57.300 33.333 0.00 0.00 0.00 3.16
525 543 7.801716 AACACATGAAGAAAACTAGCAACTA 57.198 32.000 0.00 0.00 0.00 2.24
526 544 7.190920 ACACATGAAGAAAACTAGCAACTAC 57.809 36.000 0.00 0.00 0.00 2.73
527 545 6.073765 ACACATGAAGAAAACTAGCAACTACG 60.074 38.462 0.00 0.00 0.00 3.51
777 1076 6.053005 CCACTTGTAACTTTCCAGTCTGTAA 58.947 40.000 0.00 0.00 30.45 2.41
792 1091 4.020543 GTCTGTAATGGACACCTCTCTCT 58.979 47.826 0.00 0.00 33.31 3.10
795 1094 1.872773 AATGGACACCTCTCTCTCCC 58.127 55.000 0.00 0.00 0.00 4.30
825 1124 6.481643 CGTTATTATTACCATCCATCCCCTT 58.518 40.000 0.00 0.00 0.00 3.95
983 1294 4.101448 CCCTAGCCGCAGCCTGTT 62.101 66.667 0.00 0.00 41.25 3.16
996 1307 3.726517 CTGTTTCCACAGCCCGCG 61.727 66.667 0.00 0.00 44.16 6.46
1021 1332 3.041940 CCGCGCTCCACGTTTTCT 61.042 61.111 5.56 0.00 46.11 2.52
1727 2038 2.047274 CGGCGGCTTCTTCAGGAA 60.047 61.111 7.61 0.00 0.00 3.36
1785 2096 1.401905 GATTTGAGCAACACCGGGATC 59.598 52.381 6.32 0.00 0.00 3.36
1827 2138 1.986378 GATTCGTGGTTCTCACTGTCG 59.014 52.381 0.00 0.00 43.94 4.35
1842 2153 3.319198 TCGGTCTTCAGGGTGGCC 61.319 66.667 0.00 0.00 0.00 5.36
1875 2186 1.288188 TTGGGATGATGCCTGAGACA 58.712 50.000 4.19 0.00 0.00 3.41
2011 2322 7.020602 CACGATCTACTAGTAGCATGAATCTG 58.979 42.308 22.87 16.65 33.32 2.90
2020 2331 3.446442 AGCATGAATCTGAACCCAAGT 57.554 42.857 0.00 0.00 0.00 3.16
2043 2354 3.521531 TGGAATAGTGGTGATGTTGGCTA 59.478 43.478 0.00 0.00 0.00 3.93
2083 2394 1.520787 GCCTTGCCAATGCTGATGC 60.521 57.895 0.00 0.00 38.71 3.91
2100 2411 2.667418 CCCAGTGAGCTCCCACAG 59.333 66.667 12.15 0.86 39.42 3.66
2230 2541 2.686405 TGCATCTTGAATCTGGACATGC 59.314 45.455 0.00 0.00 0.00 4.06
2396 2707 2.926200 CGCATGCATGACTAGCCTATAC 59.074 50.000 30.64 6.66 0.00 1.47
2435 2746 2.035237 TTGGTCTTTCTCGCGTGGGT 62.035 55.000 5.77 0.00 0.00 4.51
2649 2965 3.774066 TCAGTGCTATCACAACAGATCG 58.226 45.455 0.00 0.00 45.49 3.69
2698 3014 3.242673 GCTTTCATGACTAGTGAGCATGC 60.243 47.826 10.51 10.51 37.24 4.06
2824 3148 8.072567 ACTTTGAAAATGTTGAATCTCTCTTCG 58.927 33.333 0.00 0.00 28.79 3.79
2857 3181 2.084546 GGTTCATTACCAGCCACTGTC 58.915 52.381 0.00 0.00 46.92 3.51
2930 3254 4.523083 AGCTATTTTGCGTTCTTGGGATA 58.477 39.130 0.00 0.00 38.13 2.59
2933 3257 1.083489 TTTGCGTTCTTGGGATAGCG 58.917 50.000 0.00 0.00 0.00 4.26
3027 3351 4.699925 ACTTAGTTACCCTGAAGTTGCA 57.300 40.909 0.00 0.00 0.00 4.08
3631 3955 0.179202 CACAGAGTCGAGCGTCTCAG 60.179 60.000 16.77 12.22 33.79 3.35
3853 4177 7.035612 GTCCAAAAGATAATGTCATTCCAACC 58.964 38.462 0.07 0.00 0.00 3.77
4384 4708 2.900337 GCGTTCTATTGGGGGCCG 60.900 66.667 0.00 0.00 0.00 6.13
4487 4812 4.464951 TGCTCATTTCCTTTGAATCTGCAT 59.535 37.500 0.00 0.00 0.00 3.96
4531 4858 7.977293 TGTTAGTTCGATATACTTTGCTTGCTA 59.023 33.333 0.00 0.00 0.00 3.49
4549 4876 7.967178 GCTTGCTAGCAATGAAATATTTTGTT 58.033 30.769 29.40 0.00 46.95 2.83
4552 4879 9.709495 TTGCTAGCAATGAAATATTTTGTTCTT 57.291 25.926 26.06 0.00 0.00 2.52
4553 4880 9.142515 TGCTAGCAATGAAATATTTTGTTCTTG 57.857 29.630 16.84 4.09 0.00 3.02
4562 4889 8.998377 TGAAATATTTTGTTCTTGTCATCTCGA 58.002 29.630 1.43 0.00 0.00 4.04
4575 4902 4.455533 TGTCATCTCGAAAATTGTTCCTGG 59.544 41.667 0.00 0.00 0.00 4.45
4587 4914 6.909550 AATTGTTCCTGGTGCTATTTGTTA 57.090 33.333 0.00 0.00 0.00 2.41
4593 4920 8.465999 TGTTCCTGGTGCTATTTGTTAATATTG 58.534 33.333 0.00 0.00 0.00 1.90
4620 4947 8.046107 TCATATGATATTCGGCATGTAATTCCA 58.954 33.333 0.00 0.00 0.00 3.53
4658 4985 4.156556 TGCATACTGAACATTTCCTTCTGC 59.843 41.667 0.00 0.00 0.00 4.26
4675 5002 8.099364 TCCTTCTGCAATTACTTACTGAAAAG 57.901 34.615 0.00 0.00 0.00 2.27
4701 5028 1.708993 TTTGCCCCTGTGCAGAGTCT 61.709 55.000 10.34 0.00 43.21 3.24
4875 5202 2.301870 TCCGAAGCTGGTTGATTACTGT 59.698 45.455 0.00 0.00 0.00 3.55
4878 5205 3.369147 CGAAGCTGGTTGATTACTGTCTG 59.631 47.826 0.00 0.00 0.00 3.51
5022 5349 0.390603 CGTTTGGCGTGGTCATCCTA 60.391 55.000 0.00 0.00 35.54 2.94
5070 5397 0.689080 ACATCATCTCGGGGCAGTCT 60.689 55.000 0.00 0.00 0.00 3.24
5136 5463 2.750350 CGGGGGACTGACTGCTTT 59.250 61.111 0.00 0.00 39.98 3.51
5341 5669 6.370718 AGTGTACATGTAACCGATTTTTCTCC 59.629 38.462 7.25 0.00 0.00 3.71
5352 5683 2.042104 TTTTTCTCCTCGTCGTCGTC 57.958 50.000 1.33 0.00 38.33 4.20
5528 5885 5.180492 TGTTGGTATCCACTCGTCAATTTTC 59.820 40.000 0.00 0.00 30.78 2.29
5537 5897 7.193595 TCCACTCGTCAATTTTCTTTTCTTTC 58.806 34.615 0.00 0.00 0.00 2.62
5570 5930 3.552478 CGGATCCTGTGATGATCTGTGAG 60.552 52.174 10.75 0.00 39.65 3.51
5584 5944 3.279116 TGAGGTGCACAGCGTTGC 61.279 61.111 20.43 5.69 43.31 4.17
5650 6011 6.481313 TGATCTTCTCTTTCTTGTGTGAAGTG 59.519 38.462 0.00 0.00 36.09 3.16
5651 6012 5.977635 TCTTCTCTTTCTTGTGTGAAGTGA 58.022 37.500 0.00 0.00 36.09 3.41
5652 6013 6.406370 TCTTCTCTTTCTTGTGTGAAGTGAA 58.594 36.000 0.00 0.00 36.09 3.18
5653 6014 6.536582 TCTTCTCTTTCTTGTGTGAAGTGAAG 59.463 38.462 15.51 15.51 36.09 3.02
5654 6015 5.734720 TCTCTTTCTTGTGTGAAGTGAAGT 58.265 37.500 0.00 0.00 0.00 3.01
5662 6023 4.119862 TGTGTGAAGTGAAGTTACTCTGC 58.880 43.478 0.00 0.00 0.00 4.26
5685 6049 3.970640 TCTGGCCTTTGGGTTTTAAACAT 59.029 39.130 10.14 0.00 34.45 2.71
5708 6072 2.209809 ATGGTGGTGGTCTGGGGA 59.790 61.111 0.00 0.00 0.00 4.81
5773 6137 3.441496 AACTGGCGCATGATTTATTGG 57.559 42.857 10.83 0.00 0.00 3.16
5885 6249 1.079503 GCTGTCTGATCAAACCGTCC 58.920 55.000 0.00 0.00 0.00 4.79
5894 6258 1.302033 CAAACCGTCCAGAGCAGCT 60.302 57.895 0.00 0.00 0.00 4.24
5967 6362 2.740826 CACGGTGAAATCGGCGGT 60.741 61.111 7.21 0.00 0.00 5.68
6017 6449 0.620556 GTCCTTGGATTGGAGGAGCA 59.379 55.000 0.00 0.00 42.49 4.26
6062 6494 3.676598 CGGGCATGAATGATTTTGCTTCA 60.677 43.478 11.92 0.00 35.46 3.02
6068 6500 7.148306 GGCATGAATGATTTTGCTTCAGAAAAT 60.148 33.333 11.92 0.00 36.04 1.82
6100 6532 1.080230 CTGTGGTCCTCTGTCTGCG 60.080 63.158 0.00 0.00 0.00 5.18
6116 6554 2.829914 CGCACCACATGGGATGGG 60.830 66.667 0.00 0.00 43.98 4.00
6138 6576 2.181021 GCAGATGCAGTTGCTGGC 59.819 61.111 15.72 0.64 42.66 4.85
6235 6678 0.103755 GATGGCTCTGTCGATGCAGA 59.896 55.000 5.69 5.69 42.56 4.26
6240 6683 1.803289 TCTGTCGATGCAGAGGTCG 59.197 57.895 1.80 0.98 40.23 4.79
6243 6686 4.320910 TCGATGCAGAGGTCGACT 57.679 55.556 16.46 0.90 41.44 4.18
6244 6687 1.803289 TCGATGCAGAGGTCGACTG 59.197 57.895 16.46 7.24 41.44 3.51
6245 6688 0.676782 TCGATGCAGAGGTCGACTGA 60.677 55.000 16.46 0.00 41.44 3.41
6246 6689 0.383590 CGATGCAGAGGTCGACTGAT 59.616 55.000 16.46 1.52 40.11 2.90
6247 6690 1.202348 CGATGCAGAGGTCGACTGATT 60.202 52.381 16.46 0.00 40.11 2.57
6248 6691 2.200067 GATGCAGAGGTCGACTGATTG 58.800 52.381 16.46 10.05 37.54 2.67
6249 6692 1.256812 TGCAGAGGTCGACTGATTGA 58.743 50.000 16.46 0.00 37.54 2.57
6250 6693 1.827344 TGCAGAGGTCGACTGATTGAT 59.173 47.619 16.46 0.00 37.54 2.57
6251 6694 2.200067 GCAGAGGTCGACTGATTGATG 58.800 52.381 16.46 6.34 37.54 3.07
6318 6786 0.390735 GCCACCCGAGTAAATGACGT 60.391 55.000 0.00 0.00 0.00 4.34
6327 6795 0.739813 GTAAATGACGTGGGCGAGCT 60.740 55.000 0.00 0.00 42.00 4.09
6329 6797 0.739813 AAATGACGTGGGCGAGCTAC 60.740 55.000 0.00 0.00 42.00 3.58
6330 6798 1.884075 AATGACGTGGGCGAGCTACA 61.884 55.000 0.00 0.00 42.00 2.74
6331 6799 2.506438 GACGTGGGCGAGCTACAC 60.506 66.667 0.00 11.37 42.00 2.90
6374 6842 4.869440 CGAGCTCCTCCGCTGCTG 62.869 72.222 8.47 0.00 41.08 4.41
6378 6846 4.172512 CTCCTCCGCTGCTGCCAT 62.173 66.667 10.24 0.00 35.36 4.40
6379 6847 4.478371 TCCTCCGCTGCTGCCATG 62.478 66.667 10.24 0.00 35.36 3.66
6384 6852 4.569023 CGCTGCTGCCATGCCATG 62.569 66.667 10.24 0.00 35.36 3.66
6385 6853 4.891727 GCTGCTGCCATGCCATGC 62.892 66.667 3.85 0.00 0.00 4.06
6386 6854 3.147595 CTGCTGCCATGCCATGCT 61.148 61.111 0.00 0.00 0.00 3.79
6387 6855 1.826487 CTGCTGCCATGCCATGCTA 60.826 57.895 0.00 0.00 0.00 3.49
6388 6856 1.380112 TGCTGCCATGCCATGCTAA 60.380 52.632 0.00 0.00 0.00 3.09
6389 6857 0.757561 TGCTGCCATGCCATGCTAAT 60.758 50.000 0.00 0.00 0.00 1.73
6390 6858 0.038526 GCTGCCATGCCATGCTAATC 60.039 55.000 0.00 0.00 0.00 1.75
6391 6859 1.617322 CTGCCATGCCATGCTAATCT 58.383 50.000 0.00 0.00 0.00 2.40
6392 6860 1.269723 CTGCCATGCCATGCTAATCTG 59.730 52.381 0.00 0.00 0.00 2.90
6393 6861 0.038526 GCCATGCCATGCTAATCTGC 60.039 55.000 0.00 0.00 0.00 4.26
6394 6862 0.601558 CCATGCCATGCTAATCTGCC 59.398 55.000 0.00 0.00 0.00 4.85
6395 6863 1.324383 CATGCCATGCTAATCTGCCA 58.676 50.000 0.00 0.00 0.00 4.92
6396 6864 1.893137 CATGCCATGCTAATCTGCCAT 59.107 47.619 0.00 0.00 0.00 4.40
6397 6865 2.076207 TGCCATGCTAATCTGCCATT 57.924 45.000 0.00 0.00 0.00 3.16
6398 6866 1.684450 TGCCATGCTAATCTGCCATTG 59.316 47.619 0.00 0.00 0.00 2.82
6399 6867 1.604693 GCCATGCTAATCTGCCATTGC 60.605 52.381 0.00 0.00 38.26 3.56
6400 6868 1.000506 CCATGCTAATCTGCCATTGCC 59.999 52.381 0.00 0.00 36.33 4.52
6401 6869 0.956633 ATGCTAATCTGCCATTGCCG 59.043 50.000 0.00 0.00 36.33 5.69
6402 6870 0.107263 TGCTAATCTGCCATTGCCGA 60.107 50.000 0.00 0.00 35.09 5.54
6403 6871 0.590195 GCTAATCTGCCATTGCCGAG 59.410 55.000 0.00 0.00 34.04 4.63
6404 6872 1.811558 GCTAATCTGCCATTGCCGAGA 60.812 52.381 0.00 0.00 34.04 4.04
6405 6873 2.141517 CTAATCTGCCATTGCCGAGAG 58.858 52.381 0.00 0.00 34.04 3.20
6406 6874 1.099879 AATCTGCCATTGCCGAGAGC 61.100 55.000 0.00 0.00 44.14 4.09
6429 6897 3.948719 GCGGGTCAGGGTTGGACA 61.949 66.667 0.00 0.00 37.00 4.02
6430 6898 2.347490 CGGGTCAGGGTTGGACAG 59.653 66.667 0.00 0.00 37.00 3.51
6431 6899 2.034221 GGGTCAGGGTTGGACAGC 59.966 66.667 0.00 0.00 37.00 4.40
6432 6900 2.358737 GGTCAGGGTTGGACAGCG 60.359 66.667 0.00 0.00 37.00 5.18
6433 6901 2.426023 GTCAGGGTTGGACAGCGT 59.574 61.111 0.00 0.00 35.36 5.07
6434 6902 1.961277 GTCAGGGTTGGACAGCGTG 60.961 63.158 0.00 0.00 39.64 5.34
6435 6903 3.357079 CAGGGTTGGACAGCGTGC 61.357 66.667 0.00 0.00 32.37 5.34
6436 6904 4.643387 AGGGTTGGACAGCGTGCC 62.643 66.667 0.00 0.00 0.00 5.01
6439 6907 4.643387 GTTGGACAGCGTGCCCCT 62.643 66.667 0.00 0.00 0.00 4.79
6440 6908 4.329545 TTGGACAGCGTGCCCCTC 62.330 66.667 0.00 0.00 0.00 4.30
6445 6913 4.899239 CAGCGTGCCCCTCCGATC 62.899 72.222 0.00 0.00 0.00 3.69
6449 6917 4.222847 GTGCCCCTCCGATCCGTC 62.223 72.222 0.00 0.00 0.00 4.79
6453 6921 4.271816 CCCTCCGATCCGTCGCTG 62.272 72.222 0.00 0.00 46.32 5.18
6454 6922 4.271816 CCTCCGATCCGTCGCTGG 62.272 72.222 0.00 0.00 46.32 4.85
6455 6923 4.933064 CTCCGATCCGTCGCTGGC 62.933 72.222 0.00 0.00 46.32 4.85
6459 6927 4.148825 GATCCGTCGCTGGCAGGT 62.149 66.667 17.64 0.00 0.00 4.00
6460 6928 3.665675 GATCCGTCGCTGGCAGGTT 62.666 63.158 17.64 0.00 0.00 3.50
6461 6929 3.665675 ATCCGTCGCTGGCAGGTTC 62.666 63.158 17.64 0.00 0.00 3.62
6462 6930 4.680237 CCGTCGCTGGCAGGTTCA 62.680 66.667 17.64 0.00 0.00 3.18
6463 6931 2.434884 CGTCGCTGGCAGGTTCAT 60.435 61.111 17.64 0.00 0.00 2.57
6464 6932 2.456119 CGTCGCTGGCAGGTTCATC 61.456 63.158 17.64 0.00 0.00 2.92
6465 6933 1.375908 GTCGCTGGCAGGTTCATCA 60.376 57.895 17.64 0.00 0.00 3.07
6466 6934 1.078918 TCGCTGGCAGGTTCATCAG 60.079 57.895 17.64 0.00 0.00 2.90
6467 6935 2.758089 CGCTGGCAGGTTCATCAGC 61.758 63.158 17.64 0.00 46.32 4.26
6468 6936 2.413142 GCTGGCAGGTTCATCAGCC 61.413 63.158 17.64 0.00 44.70 4.85
6470 6938 4.421365 GGCAGGTTCATCAGCCAA 57.579 55.556 0.00 0.00 46.26 4.52
6471 6939 2.187073 GGCAGGTTCATCAGCCAAG 58.813 57.895 0.00 0.00 46.26 3.61
6472 6940 0.610232 GGCAGGTTCATCAGCCAAGT 60.610 55.000 0.00 0.00 46.26 3.16
6473 6941 0.524862 GCAGGTTCATCAGCCAAGTG 59.475 55.000 0.00 0.00 0.00 3.16
6474 6942 1.883638 GCAGGTTCATCAGCCAAGTGA 60.884 52.381 0.00 0.00 0.00 3.41
6475 6943 1.808945 CAGGTTCATCAGCCAAGTGAC 59.191 52.381 0.00 0.00 0.00 3.67
6476 6944 1.701847 AGGTTCATCAGCCAAGTGACT 59.298 47.619 0.00 0.00 0.00 3.41
6477 6945 2.079925 GGTTCATCAGCCAAGTGACTC 58.920 52.381 0.00 0.00 0.00 3.36
6478 6946 1.728971 GTTCATCAGCCAAGTGACTCG 59.271 52.381 0.00 0.00 0.00 4.18
6479 6947 1.256812 TCATCAGCCAAGTGACTCGA 58.743 50.000 0.00 0.00 0.00 4.04
6480 6948 1.827344 TCATCAGCCAAGTGACTCGAT 59.173 47.619 0.00 0.00 0.00 3.59
6481 6949 1.931841 CATCAGCCAAGTGACTCGATG 59.068 52.381 0.00 0.00 0.00 3.84
6482 6950 0.247460 TCAGCCAAGTGACTCGATGG 59.753 55.000 0.00 0.00 36.00 3.51
6483 6951 0.247460 CAGCCAAGTGACTCGATGGA 59.753 55.000 6.00 0.00 34.82 3.41
6484 6952 0.976641 AGCCAAGTGACTCGATGGAA 59.023 50.000 6.00 0.00 34.82 3.53
6485 6953 1.079503 GCCAAGTGACTCGATGGAAC 58.920 55.000 6.00 0.00 34.82 3.62
6486 6954 1.350193 CCAAGTGACTCGATGGAACG 58.650 55.000 0.00 0.00 34.82 3.95
6487 6955 0.716108 CAAGTGACTCGATGGAACGC 59.284 55.000 0.00 0.00 0.00 4.84
6488 6956 0.389948 AAGTGACTCGATGGAACGCC 60.390 55.000 0.00 0.00 0.00 5.68
6499 6967 2.973694 TGGAACGCCAGAGGTAATAC 57.026 50.000 0.00 0.00 39.92 1.89
6500 6968 2.181125 TGGAACGCCAGAGGTAATACA 58.819 47.619 0.00 0.00 39.92 2.29
6501 6969 2.167693 TGGAACGCCAGAGGTAATACAG 59.832 50.000 0.00 0.00 39.92 2.74
6502 6970 2.429610 GGAACGCCAGAGGTAATACAGA 59.570 50.000 0.00 0.00 0.00 3.41
6503 6971 3.069729 GGAACGCCAGAGGTAATACAGAT 59.930 47.826 0.00 0.00 0.00 2.90
6504 6972 4.299978 GAACGCCAGAGGTAATACAGATC 58.700 47.826 0.00 0.00 0.00 2.75
6505 6973 2.293677 ACGCCAGAGGTAATACAGATCG 59.706 50.000 0.00 0.00 0.00 3.69
6506 6974 2.293677 CGCCAGAGGTAATACAGATCGT 59.706 50.000 0.00 0.00 0.00 3.73
6507 6975 3.609644 CGCCAGAGGTAATACAGATCGTC 60.610 52.174 0.00 0.00 0.00 4.20
6508 6976 3.570550 GCCAGAGGTAATACAGATCGTCT 59.429 47.826 0.00 0.00 0.00 4.18
6509 6977 4.760715 GCCAGAGGTAATACAGATCGTCTA 59.239 45.833 0.00 0.00 0.00 2.59
6510 6978 5.416326 GCCAGAGGTAATACAGATCGTCTAT 59.584 44.000 0.00 0.00 0.00 1.98
6511 6979 6.623986 GCCAGAGGTAATACAGATCGTCTATG 60.624 46.154 0.00 0.00 0.00 2.23
6512 6980 6.655425 CCAGAGGTAATACAGATCGTCTATGA 59.345 42.308 0.00 0.00 0.00 2.15
6513 6981 7.148323 CCAGAGGTAATACAGATCGTCTATGAG 60.148 44.444 0.00 0.00 0.00 2.90
6514 6982 6.373216 AGAGGTAATACAGATCGTCTATGAGC 59.627 42.308 0.00 0.00 0.00 4.26
6515 6983 5.122554 AGGTAATACAGATCGTCTATGAGCG 59.877 44.000 0.00 0.00 0.00 5.03
6516 6984 2.971430 TACAGATCGTCTATGAGCGC 57.029 50.000 0.00 0.00 0.00 5.92
6517 6985 1.025041 ACAGATCGTCTATGAGCGCA 58.975 50.000 11.47 0.00 0.00 6.09
6518 6986 1.268794 ACAGATCGTCTATGAGCGCAC 60.269 52.381 11.47 3.13 0.00 5.34
6519 6987 1.025041 AGATCGTCTATGAGCGCACA 58.975 50.000 10.65 10.65 0.00 4.57
6520 6988 1.001924 AGATCGTCTATGAGCGCACAG 60.002 52.381 14.07 0.38 0.00 3.66
6521 6989 0.741326 ATCGTCTATGAGCGCACAGT 59.259 50.000 14.07 4.52 0.00 3.55
6522 6990 0.526211 TCGTCTATGAGCGCACAGTT 59.474 50.000 14.07 0.00 0.00 3.16
6523 6991 1.067846 TCGTCTATGAGCGCACAGTTT 60.068 47.619 14.07 0.00 0.00 2.66
6524 6992 1.726791 CGTCTATGAGCGCACAGTTTT 59.273 47.619 14.07 0.00 0.00 2.43
6525 6993 2.157668 CGTCTATGAGCGCACAGTTTTT 59.842 45.455 14.07 0.00 0.00 1.94
6557 7025 5.539582 TTTTTGGACGTCGATAAGGATTG 57.460 39.130 9.92 0.00 0.00 2.67
6558 7026 4.459390 TTTGGACGTCGATAAGGATTGA 57.541 40.909 9.92 0.00 0.00 2.57
6559 7027 4.459390 TTGGACGTCGATAAGGATTGAA 57.541 40.909 9.92 0.00 0.00 2.69
6560 7028 3.777478 TGGACGTCGATAAGGATTGAAC 58.223 45.455 9.92 0.00 0.00 3.18
6561 7029 2.787680 GGACGTCGATAAGGATTGAACG 59.212 50.000 9.92 0.00 0.00 3.95
6562 7030 3.432782 GACGTCGATAAGGATTGAACGT 58.567 45.455 0.00 0.00 36.63 3.99
6563 7031 3.841643 ACGTCGATAAGGATTGAACGTT 58.158 40.909 0.00 0.00 33.31 3.99
6564 7032 3.855950 ACGTCGATAAGGATTGAACGTTC 59.144 43.478 21.42 21.42 33.31 3.95
6565 7033 3.062059 CGTCGATAAGGATTGAACGTTCG 60.062 47.826 22.48 8.13 0.00 3.95
6566 7034 3.242248 GTCGATAAGGATTGAACGTTCGG 59.758 47.826 22.48 2.89 0.00 4.30
6567 7035 3.119388 TCGATAAGGATTGAACGTTCGGT 60.119 43.478 22.48 13.75 0.00 4.69
6568 7036 3.242248 CGATAAGGATTGAACGTTCGGTC 59.758 47.826 22.48 20.48 0.00 4.79
6569 7037 2.833631 AAGGATTGAACGTTCGGTCT 57.166 45.000 22.48 14.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.930848 CGTATGTGGTTTCTAGTGGAACC 59.069 47.826 14.44 14.44 37.80 3.62
1 2 3.930848 CCGTATGTGGTTTCTAGTGGAAC 59.069 47.826 0.00 0.00 33.13 3.62
3 4 3.433343 TCCGTATGTGGTTTCTAGTGGA 58.567 45.455 0.00 0.00 0.00 4.02
4 5 3.880047 TCCGTATGTGGTTTCTAGTGG 57.120 47.619 0.00 0.00 0.00 4.00
5 6 4.755411 ACATCCGTATGTGGTTTCTAGTG 58.245 43.478 0.00 0.00 44.79 2.74
6 7 6.726490 ATACATCCGTATGTGGTTTCTAGT 57.274 37.500 3.56 0.00 45.99 2.57
9 10 8.645814 TCTATATACATCCGTATGTGGTTTCT 57.354 34.615 3.56 0.00 45.99 2.52
52 53 9.624697 GACTACATACAAAGCAAAATGAATGAA 57.375 29.630 0.00 0.00 0.00 2.57
53 54 8.243426 GGACTACATACAAAGCAAAATGAATGA 58.757 33.333 0.00 0.00 0.00 2.57
54 55 8.028354 TGGACTACATACAAAGCAAAATGAATG 58.972 33.333 0.00 0.00 0.00 2.67
55 56 8.121305 TGGACTACATACAAAGCAAAATGAAT 57.879 30.769 0.00 0.00 0.00 2.57
56 57 7.517614 TGGACTACATACAAAGCAAAATGAA 57.482 32.000 0.00 0.00 0.00 2.57
57 58 7.611467 AGATGGACTACATACAAAGCAAAATGA 59.389 33.333 0.00 0.00 40.72 2.57
58 59 7.765307 AGATGGACTACATACAAAGCAAAATG 58.235 34.615 0.00 0.00 40.72 2.32
59 60 7.944729 AGATGGACTACATACAAAGCAAAAT 57.055 32.000 0.00 0.00 40.72 1.82
60 61 8.100791 ACTAGATGGACTACATACAAAGCAAAA 58.899 33.333 0.00 0.00 40.72 2.44
61 62 7.549134 CACTAGATGGACTACATACAAAGCAAA 59.451 37.037 0.00 0.00 40.72 3.68
62 63 7.041721 CACTAGATGGACTACATACAAAGCAA 58.958 38.462 0.00 0.00 40.72 3.91
63 64 6.573434 CACTAGATGGACTACATACAAAGCA 58.427 40.000 0.00 0.00 40.72 3.91
98 99 9.280456 TCCCTCAGTTCCTAAATATAAGTCTTT 57.720 33.333 0.00 0.00 0.00 2.52
99 100 8.855804 TCCCTCAGTTCCTAAATATAAGTCTT 57.144 34.615 0.00 0.00 0.00 3.01
100 101 8.068733 ACTCCCTCAGTTCCTAAATATAAGTCT 58.931 37.037 0.00 0.00 26.56 3.24
101 102 8.252624 ACTCCCTCAGTTCCTAAATATAAGTC 57.747 38.462 0.00 0.00 26.56 3.01
102 103 9.900112 ATACTCCCTCAGTTCCTAAATATAAGT 57.100 33.333 0.00 0.00 36.43 2.24
107 108 9.804977 GTAGTATACTCCCTCAGTTCCTAAATA 57.195 37.037 9.12 0.00 38.91 1.40
108 109 8.287350 TGTAGTATACTCCCTCAGTTCCTAAAT 58.713 37.037 9.12 0.00 43.54 1.40
109 110 7.645942 TGTAGTATACTCCCTCAGTTCCTAAA 58.354 38.462 9.12 0.00 43.54 1.85
110 111 7.217028 TGTAGTATACTCCCTCAGTTCCTAA 57.783 40.000 9.12 0.00 43.54 2.69
111 112 6.836714 TGTAGTATACTCCCTCAGTTCCTA 57.163 41.667 9.12 0.00 43.54 2.94
112 113 5.728937 TGTAGTATACTCCCTCAGTTCCT 57.271 43.478 9.12 0.00 43.54 3.36
113 114 5.655532 TGTTGTAGTATACTCCCTCAGTTCC 59.344 44.000 9.12 0.00 43.54 3.62
114 115 6.770746 TGTTGTAGTATACTCCCTCAGTTC 57.229 41.667 9.12 2.07 43.54 3.01
115 116 6.895756 TCATGTTGTAGTATACTCCCTCAGTT 59.104 38.462 9.12 0.00 43.54 3.16
116 117 6.432581 TCATGTTGTAGTATACTCCCTCAGT 58.567 40.000 9.12 0.00 43.54 3.41
117 118 6.961360 TCATGTTGTAGTATACTCCCTCAG 57.039 41.667 9.12 0.00 43.54 3.35
118 119 7.785028 AGAATCATGTTGTAGTATACTCCCTCA 59.215 37.037 9.12 6.00 43.54 3.86
119 120 8.085296 CAGAATCATGTTGTAGTATACTCCCTC 58.915 40.741 9.12 0.31 43.54 4.30
120 121 7.565398 ACAGAATCATGTTGTAGTATACTCCCT 59.435 37.037 9.12 0.00 43.54 4.20
121 122 7.727181 ACAGAATCATGTTGTAGTATACTCCC 58.273 38.462 9.12 2.06 43.54 4.30
122 123 9.601217 AAACAGAATCATGTTGTAGTATACTCC 57.399 33.333 9.12 0.00 42.49 3.85
153 154 9.705290 GCACCTATTCAAGAAAGGAAAATTAAA 57.295 29.630 14.00 0.00 34.34 1.52
154 155 8.311109 GGCACCTATTCAAGAAAGGAAAATTAA 58.689 33.333 14.00 0.00 34.34 1.40
155 156 7.453126 TGGCACCTATTCAAGAAAGGAAAATTA 59.547 33.333 14.00 0.00 34.34 1.40
156 157 6.269769 TGGCACCTATTCAAGAAAGGAAAATT 59.730 34.615 14.00 0.00 34.34 1.82
157 158 5.779771 TGGCACCTATTCAAGAAAGGAAAAT 59.220 36.000 14.00 0.00 34.34 1.82
158 159 5.144100 TGGCACCTATTCAAGAAAGGAAAA 58.856 37.500 14.00 0.00 34.34 2.29
159 160 4.735369 TGGCACCTATTCAAGAAAGGAAA 58.265 39.130 14.00 0.00 34.34 3.13
160 161 4.380843 TGGCACCTATTCAAGAAAGGAA 57.619 40.909 14.00 0.00 34.34 3.36
161 162 4.591321 ATGGCACCTATTCAAGAAAGGA 57.409 40.909 14.00 0.00 34.34 3.36
162 163 5.180117 CGATATGGCACCTATTCAAGAAAGG 59.820 44.000 0.00 8.51 36.42 3.11
163 164 5.180117 CCGATATGGCACCTATTCAAGAAAG 59.820 44.000 0.00 0.00 0.00 2.62
164 165 5.063204 CCGATATGGCACCTATTCAAGAAA 58.937 41.667 0.00 0.00 0.00 2.52
165 166 4.346709 TCCGATATGGCACCTATTCAAGAA 59.653 41.667 0.00 0.00 37.80 2.52
166 167 3.901222 TCCGATATGGCACCTATTCAAGA 59.099 43.478 0.00 0.00 37.80 3.02
167 168 4.021104 TCTCCGATATGGCACCTATTCAAG 60.021 45.833 0.00 0.00 37.80 3.02
168 169 3.901222 TCTCCGATATGGCACCTATTCAA 59.099 43.478 0.00 0.00 37.80 2.69
169 170 3.506398 TCTCCGATATGGCACCTATTCA 58.494 45.455 0.00 0.00 37.80 2.57
170 171 3.764434 TCTCTCCGATATGGCACCTATTC 59.236 47.826 0.00 0.00 37.80 1.75
171 172 3.779444 TCTCTCCGATATGGCACCTATT 58.221 45.455 0.00 0.00 37.80 1.73
172 173 3.458044 TCTCTCCGATATGGCACCTAT 57.542 47.619 0.00 0.00 37.80 2.57
173 174 2.971901 TCTCTCCGATATGGCACCTA 57.028 50.000 0.00 0.00 37.80 3.08
174 175 2.088104 TTCTCTCCGATATGGCACCT 57.912 50.000 0.00 0.00 37.80 4.00
175 176 2.872858 GTTTTCTCTCCGATATGGCACC 59.127 50.000 0.00 0.00 37.80 5.01
176 177 3.557595 CAGTTTTCTCTCCGATATGGCAC 59.442 47.826 0.00 0.00 37.80 5.01
177 178 3.450817 TCAGTTTTCTCTCCGATATGGCA 59.549 43.478 0.00 0.00 37.80 4.92
178 179 4.060038 TCAGTTTTCTCTCCGATATGGC 57.940 45.455 0.00 0.00 37.80 4.40
179 180 5.419542 TGTTCAGTTTTCTCTCCGATATGG 58.580 41.667 0.00 0.00 40.09 2.74
180 181 7.545362 AATGTTCAGTTTTCTCTCCGATATG 57.455 36.000 0.00 0.00 0.00 1.78
181 182 8.043710 AGAAATGTTCAGTTTTCTCTCCGATAT 58.956 33.333 0.00 0.00 37.58 1.63
182 183 7.386851 AGAAATGTTCAGTTTTCTCTCCGATA 58.613 34.615 0.00 0.00 37.58 2.92
183 184 6.234177 AGAAATGTTCAGTTTTCTCTCCGAT 58.766 36.000 0.00 0.00 37.58 4.18
184 185 5.611374 AGAAATGTTCAGTTTTCTCTCCGA 58.389 37.500 0.00 0.00 37.58 4.55
185 186 5.931441 AGAAATGTTCAGTTTTCTCTCCG 57.069 39.130 0.00 0.00 37.58 4.63
186 187 7.358830 CAGAAGAAATGTTCAGTTTTCTCTCC 58.641 38.462 0.00 0.00 40.39 3.71
187 188 6.855403 GCAGAAGAAATGTTCAGTTTTCTCTC 59.145 38.462 0.00 0.00 40.39 3.20
188 189 6.545298 AGCAGAAGAAATGTTCAGTTTTCTCT 59.455 34.615 0.00 0.00 40.39 3.10
189 190 6.733145 AGCAGAAGAAATGTTCAGTTTTCTC 58.267 36.000 0.00 0.00 40.39 2.87
190 191 6.705863 AGCAGAAGAAATGTTCAGTTTTCT 57.294 33.333 0.00 0.00 42.46 2.52
191 192 7.761651 AAAGCAGAAGAAATGTTCAGTTTTC 57.238 32.000 0.00 0.00 25.57 2.29
192 193 9.252962 CATAAAGCAGAAGAAATGTTCAGTTTT 57.747 29.630 3.89 3.89 33.24 2.43
193 194 7.869429 CCATAAAGCAGAAGAAATGTTCAGTTT 59.131 33.333 0.00 0.00 0.00 2.66
194 195 7.014615 ACCATAAAGCAGAAGAAATGTTCAGTT 59.985 33.333 0.00 0.00 0.00 3.16
195 196 6.491403 ACCATAAAGCAGAAGAAATGTTCAGT 59.509 34.615 0.00 0.00 0.00 3.41
196 197 6.917533 ACCATAAAGCAGAAGAAATGTTCAG 58.082 36.000 0.00 0.00 0.00 3.02
197 198 6.899393 ACCATAAAGCAGAAGAAATGTTCA 57.101 33.333 0.00 0.00 0.00 3.18
198 199 7.251281 GGTACCATAAAGCAGAAGAAATGTTC 58.749 38.462 7.15 0.00 0.00 3.18
199 200 6.128007 CGGTACCATAAAGCAGAAGAAATGTT 60.128 38.462 13.54 0.00 0.00 2.71
200 201 5.354234 CGGTACCATAAAGCAGAAGAAATGT 59.646 40.000 13.54 0.00 0.00 2.71
201 202 5.354234 ACGGTACCATAAAGCAGAAGAAATG 59.646 40.000 13.54 0.00 0.00 2.32
202 203 5.497474 ACGGTACCATAAAGCAGAAGAAAT 58.503 37.500 13.54 0.00 0.00 2.17
203 204 4.901868 ACGGTACCATAAAGCAGAAGAAA 58.098 39.130 13.54 0.00 0.00 2.52
204 205 4.546829 ACGGTACCATAAAGCAGAAGAA 57.453 40.909 13.54 0.00 0.00 2.52
205 206 4.546829 AACGGTACCATAAAGCAGAAGA 57.453 40.909 13.54 0.00 0.00 2.87
206 207 5.048991 ACAAAACGGTACCATAAAGCAGAAG 60.049 40.000 13.54 0.00 0.00 2.85
207 208 4.822896 ACAAAACGGTACCATAAAGCAGAA 59.177 37.500 13.54 0.00 0.00 3.02
208 209 4.391155 ACAAAACGGTACCATAAAGCAGA 58.609 39.130 13.54 0.00 0.00 4.26
209 210 4.759516 ACAAAACGGTACCATAAAGCAG 57.240 40.909 13.54 0.00 0.00 4.24
210 211 6.630444 TTAACAAAACGGTACCATAAAGCA 57.370 33.333 13.54 0.00 0.00 3.91
211 212 7.007636 CGATTTAACAAAACGGTACCATAAAGC 59.992 37.037 13.54 7.07 33.69 3.51
212 213 8.229137 TCGATTTAACAAAACGGTACCATAAAG 58.771 33.333 13.54 0.75 37.29 1.85
213 214 8.092521 TCGATTTAACAAAACGGTACCATAAA 57.907 30.769 13.54 5.84 37.29 1.40
214 215 7.148440 CCTCGATTTAACAAAACGGTACCATAA 60.148 37.037 13.54 0.00 37.29 1.90
215 216 6.313411 CCTCGATTTAACAAAACGGTACCATA 59.687 38.462 13.54 0.00 37.29 2.74
216 217 5.122711 CCTCGATTTAACAAAACGGTACCAT 59.877 40.000 13.54 0.00 37.29 3.55
217 218 4.451774 CCTCGATTTAACAAAACGGTACCA 59.548 41.667 13.54 0.00 37.29 3.25
218 219 4.452114 ACCTCGATTTAACAAAACGGTACC 59.548 41.667 0.16 0.16 37.29 3.34
219 220 5.596268 ACCTCGATTTAACAAAACGGTAC 57.404 39.130 2.23 0.00 37.29 3.34
220 221 6.616774 AAACCTCGATTTAACAAAACGGTA 57.383 33.333 2.23 0.00 37.29 4.02
221 222 5.503662 AAACCTCGATTTAACAAAACGGT 57.496 34.783 2.23 0.00 37.29 4.83
236 237 4.032900 CACTCATTACAATCCGAAACCTCG 59.967 45.833 0.00 0.00 45.02 4.63
443 446 4.085733 TGGGTCATGAAAAGGGTAACATG 58.914 43.478 0.00 0.00 40.65 3.21
448 451 2.243736 GGGATGGGTCATGAAAAGGGTA 59.756 50.000 0.00 0.00 0.00 3.69
450 453 1.006998 TGGGATGGGTCATGAAAAGGG 59.993 52.381 0.00 0.00 0.00 3.95
452 455 3.431207 GCAATGGGATGGGTCATGAAAAG 60.431 47.826 0.00 0.00 0.00 2.27
466 471 0.907704 ACTACTGGACGGCAATGGGA 60.908 55.000 0.00 0.00 0.00 4.37
562 580 9.877178 ACTTGTATAATGAGTTTCTCTAACCTG 57.123 33.333 0.00 0.00 37.46 4.00
644 943 4.227300 ACTCTTATGGGTGTGGATTAAGCA 59.773 41.667 0.00 0.00 0.00 3.91
647 946 6.206787 TCCTACTCTTATGGGTGTGGATTAA 58.793 40.000 0.00 0.00 0.00 1.40
777 1076 0.031616 GGGGAGAGAGAGGTGTCCAT 60.032 60.000 0.00 0.00 31.19 3.41
792 1091 2.299867 GGTAATAATAACGGCGAGGGGA 59.700 50.000 16.62 0.00 0.00 4.81
795 1094 3.930848 GGATGGTAATAATAACGGCGAGG 59.069 47.826 16.62 0.00 0.00 4.63
1021 1332 1.165907 CCGAACACCAGCAGAAGCAA 61.166 55.000 0.00 0.00 45.49 3.91
1785 2096 4.891727 CTCGGAACCATCCCGGCG 62.892 72.222 0.00 0.00 46.47 6.46
1827 2138 4.410400 CCGGCCACCCTGAAGACC 62.410 72.222 2.24 0.00 0.00 3.85
1842 2153 0.254747 TCCCAAAGAGGCCATTACCG 59.745 55.000 5.01 0.00 35.39 4.02
2011 2322 3.506067 CACCACTATTCCAACTTGGGTTC 59.494 47.826 8.01 0.00 38.32 3.62
2020 2331 3.088532 GCCAACATCACCACTATTCCAA 58.911 45.455 0.00 0.00 0.00 3.53
2043 2354 3.662759 TCCAAAGTTCAAGGAACAGGT 57.337 42.857 11.28 0.00 44.11 4.00
2083 2394 2.219875 ACTGTGGGAGCTCACTGGG 61.220 63.158 18.70 9.14 39.75 4.45
2100 2411 5.493133 TTGTGATCCAAGTACAACAACAC 57.507 39.130 0.00 0.00 30.06 3.32
2230 2541 1.821136 GGAATCCTCCAAGCAAACAGG 59.179 52.381 0.00 0.00 41.96 4.00
2311 2622 1.659098 GATTTTCCGAGTCGCGACAAT 59.341 47.619 37.85 26.82 44.57 2.71
2425 2736 0.881159 TTGTAAACCACCCACGCGAG 60.881 55.000 15.93 4.16 0.00 5.03
2431 2742 3.866703 TGACATCTTGTAAACCACCCA 57.133 42.857 0.00 0.00 0.00 4.51
2435 2746 4.635765 GCTAGCATGACATCTTGTAAACCA 59.364 41.667 10.63 0.00 0.00 3.67
2506 2817 4.197750 CTCCTAAGCATGCAAGAGTCAAT 58.802 43.478 21.98 0.00 0.00 2.57
2547 2858 1.390463 CTAGCACGGAAGAAACGAAGC 59.610 52.381 0.00 0.00 36.64 3.86
2698 3014 8.840867 GCAATTATTCAAAGTTCGAAACTACTG 58.159 33.333 0.00 2.12 41.91 2.74
2707 3024 8.131100 AGACATATGGCAATTATTCAAAGTTCG 58.869 33.333 12.11 0.00 0.00 3.95
2824 3148 6.305693 GGTAATGAACCTGATAGCACATTC 57.694 41.667 0.00 0.00 45.75 2.67
2857 3181 0.583438 CAACTGAGACACACTTGCCG 59.417 55.000 0.00 0.00 0.00 5.69
2930 3254 1.204941 GTCAATCACCTCCACTACGCT 59.795 52.381 0.00 0.00 0.00 5.07
2933 3257 4.021016 ACTCAAGTCAATCACCTCCACTAC 60.021 45.833 0.00 0.00 0.00 2.73
3027 3351 4.697352 CAGATCCCTTCAACGAATTGTTCT 59.303 41.667 0.00 0.00 39.29 3.01
3631 3955 2.171448 ACCAGCCTTATGTCCATGAGAC 59.829 50.000 0.00 0.39 46.51 3.36
3853 4177 6.135290 TGGTCATTTGAGAAACTTGTCTTG 57.865 37.500 0.00 0.00 0.00 3.02
4531 4858 9.715121 ATGACAAGAACAAAATATTTCATTGCT 57.285 25.926 0.10 0.00 0.00 3.91
4546 4873 6.618287 ACAATTTTCGAGATGACAAGAACA 57.382 33.333 0.00 0.00 0.00 3.18
4547 4874 6.578919 GGAACAATTTTCGAGATGACAAGAAC 59.421 38.462 0.00 0.00 0.00 3.01
4549 4876 5.997746 AGGAACAATTTTCGAGATGACAAGA 59.002 36.000 0.00 0.00 0.00 3.02
4552 4879 4.455533 CCAGGAACAATTTTCGAGATGACA 59.544 41.667 0.00 0.00 0.00 3.58
4553 4880 4.455877 ACCAGGAACAATTTTCGAGATGAC 59.544 41.667 0.00 0.00 0.00 3.06
4562 4889 6.173427 ACAAATAGCACCAGGAACAATTTT 57.827 33.333 0.00 0.00 0.00 1.82
4587 4914 9.399797 ACATGCCGAATATCATATGACAATATT 57.600 29.630 7.78 8.52 0.00 1.28
4593 4920 8.338259 GGAATTACATGCCGAATATCATATGAC 58.662 37.037 7.78 0.00 0.00 3.06
4598 4925 7.231317 ACTTTGGAATTACATGCCGAATATCAT 59.769 33.333 0.00 0.00 0.00 2.45
4599 4926 6.545666 ACTTTGGAATTACATGCCGAATATCA 59.454 34.615 0.00 0.00 0.00 2.15
4605 4932 3.680490 TGACTTTGGAATTACATGCCGA 58.320 40.909 0.00 0.00 0.00 5.54
4620 4947 7.692460 TCAGTATGCAGAAATGAATGACTTT 57.308 32.000 0.00 0.00 34.76 2.66
4675 5002 0.817654 GCACAGGGGCAAAGGTAATC 59.182 55.000 0.00 0.00 0.00 1.75
4678 5005 1.074775 CTGCACAGGGGCAAAGGTA 59.925 57.895 0.00 0.00 44.40 3.08
4683 5010 0.835971 TAGACTCTGCACAGGGGCAA 60.836 55.000 6.07 0.00 40.25 4.52
4701 5028 3.244840 GGCGGGAGTATCTTCTAGGAGTA 60.245 52.174 0.00 0.00 33.73 2.59
4924 5251 0.393077 CGGTACCCCAATGCTCCTAG 59.607 60.000 6.25 0.00 0.00 3.02
5017 5344 1.338337 CCGCGTCAACATCTCTAGGAT 59.662 52.381 4.92 0.00 34.51 3.24
5022 5349 0.888619 TCTTCCGCGTCAACATCTCT 59.111 50.000 4.92 0.00 0.00 3.10
5295 5623 4.103153 ACTGGTGAACTGATGAAGAAAGGA 59.897 41.667 0.00 0.00 0.00 3.36
5296 5624 4.214971 CACTGGTGAACTGATGAAGAAAGG 59.785 45.833 0.00 0.00 0.00 3.11
5297 5625 4.818546 ACACTGGTGAACTGATGAAGAAAG 59.181 41.667 7.78 0.00 0.00 2.62
5299 5627 4.422073 ACACTGGTGAACTGATGAAGAA 57.578 40.909 7.78 0.00 0.00 2.52
5301 5629 4.631131 TGTACACTGGTGAACTGATGAAG 58.369 43.478 7.78 0.00 0.00 3.02
5341 5669 2.202311 ATGCACGACGACGACGAG 60.202 61.111 25.15 18.37 42.66 4.18
5537 5897 1.134580 ACAGGATCCGATTCTGCACAG 60.135 52.381 15.65 0.00 32.19 3.66
5576 5936 1.506262 GGTAACATGGGCAACGCTG 59.494 57.895 0.00 0.00 37.60 5.18
5579 5939 1.933115 GCTGGGTAACATGGGCAACG 61.933 60.000 0.00 0.00 39.74 4.10
5581 5941 0.897863 GTGCTGGGTAACATGGGCAA 60.898 55.000 0.00 0.00 39.74 4.52
5584 5944 0.038166 ACTGTGCTGGGTAACATGGG 59.962 55.000 0.00 0.00 39.74 4.00
5650 6011 1.552792 AGGCCAGAGCAGAGTAACTTC 59.447 52.381 5.01 0.00 42.56 3.01
5651 6012 1.650528 AGGCCAGAGCAGAGTAACTT 58.349 50.000 5.01 0.00 42.56 2.66
5652 6013 1.650528 AAGGCCAGAGCAGAGTAACT 58.349 50.000 5.01 0.00 42.56 2.24
5653 6014 2.079925 CAAAGGCCAGAGCAGAGTAAC 58.920 52.381 5.01 0.00 42.56 2.50
5654 6015 1.003580 CCAAAGGCCAGAGCAGAGTAA 59.996 52.381 5.01 0.00 42.56 2.24
5662 6023 3.386402 TGTTTAAAACCCAAAGGCCAGAG 59.614 43.478 5.01 0.00 36.11 3.35
5685 6049 2.115052 GACCACCACCATGTGCCA 59.885 61.111 0.00 0.00 34.85 4.92
5708 6072 3.488423 AGGCACAAGCTGTAGCCT 58.512 55.556 17.58 17.58 44.29 4.58
5941 6305 1.007336 ATTTCACCGTGCGACGACTC 61.007 55.000 0.00 0.00 46.05 3.36
5967 6362 1.737236 CTCCAAATGCACGATTCGGAA 59.263 47.619 11.29 0.00 0.00 4.30
5977 6403 3.903090 ACCAAAATCTTCCTCCAAATGCA 59.097 39.130 0.00 0.00 0.00 3.96
6017 6449 2.342659 CCCATGACCCATATCACCTCT 58.657 52.381 0.00 0.00 0.00 3.69
6062 6494 2.887152 AGCAGGCGTTCTGAAATTTTCT 59.113 40.909 10.33 0.00 46.18 2.52
6068 6500 1.165907 CCACAGCAGGCGTTCTGAAA 61.166 55.000 12.98 0.00 46.18 2.69
6100 6532 1.754234 GTCCCATCCCATGTGGTGC 60.754 63.158 0.00 0.00 34.87 5.01
6116 6554 2.097160 CAACTGCATCTGCGCGTC 59.903 61.111 8.43 0.00 45.83 5.19
6235 6678 1.198713 AGCCATCAATCAGTCGACCT 58.801 50.000 13.01 0.00 0.00 3.85
6238 6681 1.749063 ACGTAGCCATCAATCAGTCGA 59.251 47.619 0.00 0.00 0.00 4.20
6240 6683 2.860735 GTGACGTAGCCATCAATCAGTC 59.139 50.000 0.00 0.00 0.00 3.51
6242 6685 2.205074 GGTGACGTAGCCATCAATCAG 58.795 52.381 0.00 0.00 0.00 2.90
6243 6686 2.309528 GGTGACGTAGCCATCAATCA 57.690 50.000 0.00 0.00 0.00 2.57
6299 6767 0.390735 ACGTCATTTACTCGGGTGGC 60.391 55.000 0.00 0.00 0.00 5.01
6327 6795 2.899976 CATTCATGGCGTGTAGGTGTA 58.100 47.619 6.60 0.00 0.00 2.90
6329 6797 0.378257 GCATTCATGGCGTGTAGGTG 59.622 55.000 6.60 3.30 0.00 4.00
6330 6798 2.780595 GCATTCATGGCGTGTAGGT 58.219 52.632 6.60 0.00 0.00 3.08
6362 6830 4.478371 CATGGCAGCAGCGGAGGA 62.478 66.667 0.00 0.00 43.41 3.71
6367 6835 4.569023 CATGGCATGGCAGCAGCG 62.569 66.667 27.02 9.24 43.41 5.18
6368 6836 4.891727 GCATGGCATGGCAGCAGC 62.892 66.667 27.48 24.18 41.10 5.25
6369 6837 1.388837 TTAGCATGGCATGGCAGCAG 61.389 55.000 30.54 22.72 35.83 4.24
6370 6838 0.757561 ATTAGCATGGCATGGCAGCA 60.758 50.000 30.54 19.17 35.83 4.41
6371 6839 0.038526 GATTAGCATGGCATGGCAGC 60.039 55.000 27.48 26.18 0.00 5.25
6372 6840 1.269723 CAGATTAGCATGGCATGGCAG 59.730 52.381 27.48 18.79 0.00 4.85
6373 6841 1.324383 CAGATTAGCATGGCATGGCA 58.676 50.000 27.48 25.52 0.00 4.92
6374 6842 0.038526 GCAGATTAGCATGGCATGGC 60.039 55.000 27.48 19.20 0.00 4.40
6375 6843 0.601558 GGCAGATTAGCATGGCATGG 59.398 55.000 27.48 10.97 41.35 3.66
6376 6844 1.324383 TGGCAGATTAGCATGGCATG 58.676 50.000 22.99 22.99 45.82 4.06
6377 6845 3.833729 TGGCAGATTAGCATGGCAT 57.166 47.368 0.00 0.00 45.82 4.40
6379 6847 1.604693 GCAATGGCAGATTAGCATGGC 60.605 52.381 0.00 0.00 42.01 4.40
6380 6848 1.000506 GGCAATGGCAGATTAGCATGG 59.999 52.381 0.58 0.00 43.71 3.66
6381 6849 1.335597 CGGCAATGGCAGATTAGCATG 60.336 52.381 7.75 0.00 43.71 4.06
6382 6850 0.956633 CGGCAATGGCAGATTAGCAT 59.043 50.000 7.75 0.00 43.71 3.79
6383 6851 0.107263 TCGGCAATGGCAGATTAGCA 60.107 50.000 7.75 0.00 39.36 3.49
6384 6852 0.590195 CTCGGCAATGGCAGATTAGC 59.410 55.000 7.75 0.00 43.29 3.09
6385 6853 2.141517 CTCTCGGCAATGGCAGATTAG 58.858 52.381 7.75 0.00 43.29 1.73
6386 6854 1.811558 GCTCTCGGCAATGGCAGATTA 60.812 52.381 7.75 0.00 43.29 1.75
6387 6855 1.099879 GCTCTCGGCAATGGCAGATT 61.100 55.000 7.75 0.00 43.29 2.40
6388 6856 1.525535 GCTCTCGGCAATGGCAGAT 60.526 57.895 7.75 0.00 43.29 2.90
6389 6857 2.124983 GCTCTCGGCAATGGCAGA 60.125 61.111 7.75 8.02 42.05 4.26
6401 6869 4.863925 GACCCGCGCTCTGCTCTC 62.864 72.222 5.56 0.00 43.27 3.20
6412 6880 3.901797 CTGTCCAACCCTGACCCGC 62.902 68.421 0.00 0.00 31.60 6.13
6413 6881 2.347490 CTGTCCAACCCTGACCCG 59.653 66.667 0.00 0.00 31.60 5.28
6414 6882 2.034221 GCTGTCCAACCCTGACCC 59.966 66.667 0.00 0.00 31.60 4.46
6415 6883 2.358737 CGCTGTCCAACCCTGACC 60.359 66.667 0.00 0.00 31.60 4.02
6416 6884 1.961277 CACGCTGTCCAACCCTGAC 60.961 63.158 0.00 0.00 0.00 3.51
6417 6885 2.425592 CACGCTGTCCAACCCTGA 59.574 61.111 0.00 0.00 0.00 3.86
6418 6886 3.357079 GCACGCTGTCCAACCCTG 61.357 66.667 0.00 0.00 0.00 4.45
6419 6887 4.643387 GGCACGCTGTCCAACCCT 62.643 66.667 0.00 0.00 0.00 4.34
6432 6900 4.222847 GACGGATCGGAGGGGCAC 62.223 72.222 7.35 0.00 0.00 5.01
6442 6910 3.665675 AACCTGCCAGCGACGGATC 62.666 63.158 0.00 0.00 0.00 3.36
6443 6911 3.665675 GAACCTGCCAGCGACGGAT 62.666 63.158 0.00 0.00 0.00 4.18
6444 6912 4.373116 GAACCTGCCAGCGACGGA 62.373 66.667 0.00 0.00 0.00 4.69
6445 6913 3.958147 ATGAACCTGCCAGCGACGG 62.958 63.158 0.00 0.00 0.00 4.79
6446 6914 2.434884 ATGAACCTGCCAGCGACG 60.435 61.111 0.00 0.00 0.00 5.12
6447 6915 1.364626 CTGATGAACCTGCCAGCGAC 61.365 60.000 0.00 0.00 0.00 5.19
6448 6916 1.078918 CTGATGAACCTGCCAGCGA 60.079 57.895 0.00 0.00 0.00 4.93
6449 6917 2.758089 GCTGATGAACCTGCCAGCG 61.758 63.158 0.00 0.00 41.86 5.18
6450 6918 3.194719 GCTGATGAACCTGCCAGC 58.805 61.111 0.00 0.00 44.00 4.85
6451 6919 3.915575 GGCTGATGAACCTGCCAG 58.084 61.111 0.00 0.00 46.45 4.85
6454 6922 0.524862 CACTTGGCTGATGAACCTGC 59.475 55.000 0.00 0.00 0.00 4.85
6455 6923 1.808945 GTCACTTGGCTGATGAACCTG 59.191 52.381 0.00 0.00 0.00 4.00
6456 6924 1.701847 AGTCACTTGGCTGATGAACCT 59.298 47.619 0.00 0.00 0.00 3.50
6457 6925 2.079925 GAGTCACTTGGCTGATGAACC 58.920 52.381 0.00 0.00 0.00 3.62
6458 6926 1.728971 CGAGTCACTTGGCTGATGAAC 59.271 52.381 0.00 0.00 0.00 3.18
6459 6927 1.618343 TCGAGTCACTTGGCTGATGAA 59.382 47.619 0.00 0.00 0.00 2.57
6460 6928 1.256812 TCGAGTCACTTGGCTGATGA 58.743 50.000 0.00 0.00 0.00 2.92
6461 6929 1.931841 CATCGAGTCACTTGGCTGATG 59.068 52.381 8.10 8.10 33.00 3.07
6462 6930 1.134580 CCATCGAGTCACTTGGCTGAT 60.135 52.381 0.00 0.00 0.00 2.90
6463 6931 0.247460 CCATCGAGTCACTTGGCTGA 59.753 55.000 0.00 0.00 0.00 4.26
6464 6932 0.247460 TCCATCGAGTCACTTGGCTG 59.753 55.000 0.00 0.00 0.00 4.85
6465 6933 0.976641 TTCCATCGAGTCACTTGGCT 59.023 50.000 0.00 0.00 0.00 4.75
6466 6934 1.079503 GTTCCATCGAGTCACTTGGC 58.920 55.000 0.00 0.00 0.00 4.52
6467 6935 1.350193 CGTTCCATCGAGTCACTTGG 58.650 55.000 0.00 0.00 0.00 3.61
6468 6936 0.716108 GCGTTCCATCGAGTCACTTG 59.284 55.000 0.00 0.00 0.00 3.16
6469 6937 0.389948 GGCGTTCCATCGAGTCACTT 60.390 55.000 0.00 0.00 0.00 3.16
6470 6938 1.215647 GGCGTTCCATCGAGTCACT 59.784 57.895 0.00 0.00 0.00 3.41
6471 6939 1.078759 CTGGCGTTCCATCGAGTCAC 61.079 60.000 0.00 0.00 42.51 3.67
6472 6940 1.215382 CTGGCGTTCCATCGAGTCA 59.785 57.895 0.00 0.00 42.51 3.41
6473 6941 0.526524 CTCTGGCGTTCCATCGAGTC 60.527 60.000 0.00 0.00 42.51 3.36
6474 6942 1.513158 CTCTGGCGTTCCATCGAGT 59.487 57.895 0.00 0.00 42.51 4.18
6475 6943 1.227089 CCTCTGGCGTTCCATCGAG 60.227 63.158 0.00 0.00 42.51 4.04
6476 6944 0.681887 TACCTCTGGCGTTCCATCGA 60.682 55.000 0.00 0.00 42.51 3.59
6477 6945 0.174845 TTACCTCTGGCGTTCCATCG 59.825 55.000 0.00 0.00 42.51 3.84
6478 6946 2.622064 ATTACCTCTGGCGTTCCATC 57.378 50.000 0.00 0.00 42.51 3.51
6479 6947 2.769663 TGTATTACCTCTGGCGTTCCAT 59.230 45.455 0.00 0.00 42.51 3.41
6480 6948 2.167693 CTGTATTACCTCTGGCGTTCCA 59.832 50.000 0.00 0.00 40.85 3.53
6481 6949 2.429610 TCTGTATTACCTCTGGCGTTCC 59.570 50.000 0.00 0.00 0.00 3.62
6482 6950 3.795623 TCTGTATTACCTCTGGCGTTC 57.204 47.619 0.00 0.00 0.00 3.95
6483 6951 3.243434 CGATCTGTATTACCTCTGGCGTT 60.243 47.826 0.00 0.00 0.00 4.84
6484 6952 2.293677 CGATCTGTATTACCTCTGGCGT 59.706 50.000 0.00 0.00 0.00 5.68
6485 6953 2.293677 ACGATCTGTATTACCTCTGGCG 59.706 50.000 0.00 0.00 0.00 5.69
6486 6954 3.570550 AGACGATCTGTATTACCTCTGGC 59.429 47.826 0.00 0.00 0.00 4.85
6487 6955 6.655425 TCATAGACGATCTGTATTACCTCTGG 59.345 42.308 0.00 0.00 0.00 3.86
6488 6956 7.625395 GCTCATAGACGATCTGTATTACCTCTG 60.625 44.444 0.00 0.00 0.00 3.35
6489 6957 6.373216 GCTCATAGACGATCTGTATTACCTCT 59.627 42.308 0.00 0.00 0.00 3.69
6490 6958 6.548171 GCTCATAGACGATCTGTATTACCTC 58.452 44.000 0.00 0.00 0.00 3.85
6491 6959 5.122554 CGCTCATAGACGATCTGTATTACCT 59.877 44.000 0.00 0.00 0.00 3.08
6492 6960 5.325494 CGCTCATAGACGATCTGTATTACC 58.675 45.833 0.00 0.00 0.00 2.85
6493 6961 4.789119 GCGCTCATAGACGATCTGTATTAC 59.211 45.833 0.00 0.00 0.00 1.89
6494 6962 4.454504 TGCGCTCATAGACGATCTGTATTA 59.545 41.667 9.73 0.00 0.00 0.98
6495 6963 3.253432 TGCGCTCATAGACGATCTGTATT 59.747 43.478 9.73 0.00 0.00 1.89
6496 6964 2.814336 TGCGCTCATAGACGATCTGTAT 59.186 45.455 9.73 0.00 0.00 2.29
6497 6965 2.031944 GTGCGCTCATAGACGATCTGTA 60.032 50.000 9.73 0.00 0.00 2.74
6498 6966 1.025041 TGCGCTCATAGACGATCTGT 58.975 50.000 9.73 0.00 0.00 3.41
6499 6967 1.268743 TGTGCGCTCATAGACGATCTG 60.269 52.381 9.73 0.00 0.00 2.90
6500 6968 1.001924 CTGTGCGCTCATAGACGATCT 60.002 52.381 13.20 0.00 33.81 2.75
6501 6969 1.268794 ACTGTGCGCTCATAGACGATC 60.269 52.381 13.20 0.00 35.32 3.69
6502 6970 0.741326 ACTGTGCGCTCATAGACGAT 59.259 50.000 13.20 0.00 35.32 3.73
6503 6971 0.526211 AACTGTGCGCTCATAGACGA 59.474 50.000 13.20 0.00 35.32 4.20
6504 6972 1.350193 AAACTGTGCGCTCATAGACG 58.650 50.000 13.20 3.38 35.32 4.18
6505 6973 3.813529 AAAAACTGTGCGCTCATAGAC 57.186 42.857 13.20 0.00 35.32 2.59
6535 7003 5.239351 TCAATCCTTATCGACGTCCAAAAA 58.761 37.500 10.58 0.00 0.00 1.94
6536 7004 4.823157 TCAATCCTTATCGACGTCCAAAA 58.177 39.130 10.58 0.46 0.00 2.44
6537 7005 4.459390 TCAATCCTTATCGACGTCCAAA 57.541 40.909 10.58 0.84 0.00 3.28
6538 7006 4.178540 GTTCAATCCTTATCGACGTCCAA 58.821 43.478 10.58 0.00 0.00 3.53
6539 7007 3.732774 CGTTCAATCCTTATCGACGTCCA 60.733 47.826 10.58 0.00 0.00 4.02
6540 7008 2.787680 CGTTCAATCCTTATCGACGTCC 59.212 50.000 10.58 0.00 0.00 4.79
6541 7009 3.432782 ACGTTCAATCCTTATCGACGTC 58.567 45.455 5.18 5.18 37.69 4.34
6542 7010 3.498927 ACGTTCAATCCTTATCGACGT 57.501 42.857 0.00 0.00 37.42 4.34
6543 7011 3.062059 CGAACGTTCAATCCTTATCGACG 60.062 47.826 26.71 5.54 35.39 5.12
6544 7012 3.242248 CCGAACGTTCAATCCTTATCGAC 59.758 47.826 26.71 0.00 0.00 4.20
6545 7013 3.119388 ACCGAACGTTCAATCCTTATCGA 60.119 43.478 26.71 0.00 0.00 3.59
6546 7014 3.184541 ACCGAACGTTCAATCCTTATCG 58.815 45.455 26.71 10.26 0.00 2.92
6547 7015 4.430908 AGACCGAACGTTCAATCCTTATC 58.569 43.478 26.71 11.66 0.00 1.75
6548 7016 4.467198 AGACCGAACGTTCAATCCTTAT 57.533 40.909 26.71 5.90 0.00 1.73
6549 7017 3.947910 AGACCGAACGTTCAATCCTTA 57.052 42.857 26.71 0.00 0.00 2.69
6550 7018 2.833631 AGACCGAACGTTCAATCCTT 57.166 45.000 26.71 6.87 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.