Multiple sequence alignment - TraesCS2D01G166600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G166600 chr2D 100.000 6677 0 0 1 6677 110670860 110664184 0.000000e+00 12331
1 TraesCS2D01G166600 chr2D 94.444 126 5 2 6554 6677 22461550 22461675 6.830000e-45 193
2 TraesCS2D01G166600 chr2D 91.791 134 9 2 6546 6677 22792758 22792891 1.140000e-42 185
3 TraesCS2D01G166600 chr2B 89.925 3067 203 52 1 3032 159897254 159894259 0.000000e+00 3855
4 TraesCS2D01G166600 chr2B 94.506 1529 62 10 4752 6273 159892529 159891016 0.000000e+00 2338
5 TraesCS2D01G166600 chr2B 94.860 1070 35 7 3055 4115 159894269 159893211 0.000000e+00 1653
6 TraesCS2D01G166600 chr2B 90.954 608 43 7 4114 4719 159893129 159892532 0.000000e+00 808
7 TraesCS2D01G166600 chr2B 89.571 326 27 5 6273 6596 159885992 159885672 2.240000e-109 407
8 TraesCS2D01G166600 chr2A 89.529 3056 213 59 1 3032 106811070 106808098 0.000000e+00 3771
9 TraesCS2D01G166600 chr2A 91.395 2150 101 32 4545 6635 106806561 106804437 0.000000e+00 2868
10 TraesCS2D01G166600 chr2A 95.421 1070 35 6 3055 4115 106808108 106807044 0.000000e+00 1692
11 TraesCS2D01G166600 chr2A 93.046 417 25 4 4114 4528 106806962 106806548 2.060000e-169 606
12 TraesCS2D01G166600 chr2A 90.714 140 10 3 6541 6677 24168193 24168054 4.110000e-42 183
13 TraesCS2D01G166600 chr5D 98.246 114 2 0 6564 6677 546271085 546271198 4.080000e-47 200
14 TraesCS2D01G166600 chr5D 98.246 114 2 0 6564 6677 546274574 546274687 4.080000e-47 200
15 TraesCS2D01G166600 chr5D 97.391 115 2 1 6564 6677 546232851 546232965 1.900000e-45 195
16 TraesCS2D01G166600 chr5D 97.391 115 2 1 6564 6677 546236494 546236608 1.900000e-45 195
17 TraesCS2D01G166600 chr5A 89.474 152 14 2 6528 6677 526384544 526384695 2.460000e-44 191
18 TraesCS2D01G166600 chr5B 92.481 133 9 1 6546 6677 498822125 498822257 8.840000e-44 189


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G166600 chr2D 110664184 110670860 6676 True 12331.00 12331 100.00000 1 6677 1 chr2D.!!$R1 6676
1 TraesCS2D01G166600 chr2B 159891016 159897254 6238 True 2163.50 3855 92.56125 1 6273 4 chr2B.!!$R2 6272
2 TraesCS2D01G166600 chr2A 106804437 106811070 6633 True 2234.25 3771 92.34775 1 6635 4 chr2A.!!$R2 6634

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
935 945 0.610687 CGCCCATATCTCCCTCCTTC 59.389 60.000 0.00 0.00 0.00 3.46 F
2389 2426 0.608035 GGTCATGTCCTTTCCGCCAA 60.608 55.000 1.28 0.00 0.00 4.52 F
2850 2908 0.754957 TCTAGGCAGCAGAGAGGCTC 60.755 60.000 6.34 6.34 43.68 4.70 F
3574 3633 1.216175 AGCATAATGGGTGACATGCCT 59.784 47.619 1.78 0.00 43.81 4.75 F
4234 4385 0.463474 GAAGCTGGAGGGTGAGCATC 60.463 60.000 0.00 0.00 37.70 3.91 F
4241 4392 0.820871 GAGGGTGAGCATCGACTTCT 59.179 55.000 0.00 0.00 38.61 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2850 2908 1.398958 GCTCTCCAGGGCTCTGTAGG 61.399 65.000 13.79 1.54 39.31 3.18 R
3760 3819 0.394216 TGAATGCATCAGGGGGAACG 60.394 55.000 0.00 0.00 33.04 3.95 R
4038 4106 1.071299 CCAAAAACCAGCAAGCCCC 59.929 57.895 0.00 0.00 0.00 5.80 R
5348 5515 0.975556 TAGCGCCCAAGAGACATCCA 60.976 55.000 2.29 0.00 0.00 3.41 R
5379 5546 1.000955 GTCCTTGCAACGGAAGAGAGA 59.999 52.381 16.19 0.00 31.13 3.10 R
5681 5851 1.079750 GGAGTGCTGGAGAACCGAC 60.080 63.158 0.00 0.00 39.42 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
143 144 5.712152 GGGAATCTATCGCCAATGAAAAT 57.288 39.130 0.00 0.00 35.03 1.82
144 145 6.089249 GGGAATCTATCGCCAATGAAAATT 57.911 37.500 0.00 0.00 35.03 1.82
204 205 6.451292 ACCTAGATCTAAGATCCGACCTTA 57.549 41.667 5.33 0.00 0.00 2.69
271 272 1.989430 AATTTTGTAATGTGCGCCCG 58.011 45.000 4.18 0.00 0.00 6.13
313 314 4.636435 GTGTGGTGGTGGACCCGG 62.636 72.222 0.00 0.00 45.45 5.73
319 320 4.402528 TGGTGGACCCGGCAATCG 62.403 66.667 0.00 0.00 35.15 3.34
344 345 2.297701 GGAGTGTTTGATGTGTGGTGT 58.702 47.619 0.00 0.00 0.00 4.16
382 383 2.238319 TAGGAGGCGGAGATGGTGGT 62.238 60.000 0.00 0.00 0.00 4.16
422 423 6.597672 TGGACAACGACAATGCTAAATCTAAT 59.402 34.615 0.00 0.00 0.00 1.73
451 452 6.374578 GTGTCATAAGAAAAGAAGTGAAGGC 58.625 40.000 0.00 0.00 0.00 4.35
485 490 1.212441 GTCGGGGGTAGAGAGAGAGAA 59.788 57.143 0.00 0.00 0.00 2.87
494 499 5.104485 GGGTAGAGAGAGAGAAAGAGAGAGT 60.104 48.000 0.00 0.00 0.00 3.24
504 509 4.848357 AGAAAGAGAGAGTGAGAGAGAGG 58.152 47.826 0.00 0.00 0.00 3.69
508 513 1.846439 AGAGAGTGAGAGAGAGGGAGG 59.154 57.143 0.00 0.00 0.00 4.30
780 790 2.169789 CAGAAGCACGCAGATCCCG 61.170 63.158 2.20 2.20 0.00 5.14
931 941 2.262915 CGCGCCCATATCTCCCTC 59.737 66.667 0.00 0.00 0.00 4.30
932 942 2.665603 GCGCCCATATCTCCCTCC 59.334 66.667 0.00 0.00 0.00 4.30
933 943 1.915769 GCGCCCATATCTCCCTCCT 60.916 63.158 0.00 0.00 0.00 3.69
934 944 1.484444 GCGCCCATATCTCCCTCCTT 61.484 60.000 0.00 0.00 0.00 3.36
935 945 0.610687 CGCCCATATCTCCCTCCTTC 59.389 60.000 0.00 0.00 0.00 3.46
936 946 1.829261 CGCCCATATCTCCCTCCTTCT 60.829 57.143 0.00 0.00 0.00 2.85
937 947 1.905894 GCCCATATCTCCCTCCTTCTC 59.094 57.143 0.00 0.00 0.00 2.87
938 948 2.494439 GCCCATATCTCCCTCCTTCTCT 60.494 54.545 0.00 0.00 0.00 3.10
939 949 3.868062 CCCATATCTCCCTCCTTCTCTT 58.132 50.000 0.00 0.00 0.00 2.85
940 950 3.837731 CCCATATCTCCCTCCTTCTCTTC 59.162 52.174 0.00 0.00 0.00 2.87
941 951 3.837731 CCATATCTCCCTCCTTCTCTTCC 59.162 52.174 0.00 0.00 0.00 3.46
942 952 4.450563 CCATATCTCCCTCCTTCTCTTCCT 60.451 50.000 0.00 0.00 0.00 3.36
958 968 1.082954 CCTTCTTCCTCCTCCCCCA 59.917 63.158 0.00 0.00 0.00 4.96
972 984 2.447765 CCCATTCCCTCCCCGCTA 60.448 66.667 0.00 0.00 0.00 4.26
1093 1108 2.285368 TCCTCCTCCCCGCAATGT 60.285 61.111 0.00 0.00 0.00 2.71
1403 1418 3.854459 GCGTTACCGAGCTGCTGC 61.854 66.667 7.01 7.62 35.63 5.25
1406 1421 4.451150 TTACCGAGCTGCTGCCCG 62.451 66.667 7.01 12.50 40.16 6.13
1411 1426 2.512515 GAGCTGCTGCCCGGTTAG 60.513 66.667 7.01 0.00 40.80 2.34
1412 1427 4.101448 AGCTGCTGCCCGGTTAGG 62.101 66.667 12.44 0.00 40.80 2.69
1413 1428 4.410400 GCTGCTGCCCGGTTAGGT 62.410 66.667 3.85 0.00 38.74 3.08
1438 1455 1.384525 TTGGCGTGCAACAGTAAACT 58.615 45.000 0.00 0.00 35.74 2.66
1441 1458 1.602377 GGCGTGCAACAGTAAACTCTT 59.398 47.619 0.00 0.00 35.74 2.85
1445 1462 3.621794 GTGCAACAGTAAACTCTTGCTG 58.378 45.455 19.37 8.04 44.62 4.41
1453 1470 7.602517 ACAGTAAACTCTTGCTGATTGATAC 57.397 36.000 9.51 0.00 45.30 2.24
1454 1471 6.311445 ACAGTAAACTCTTGCTGATTGATACG 59.689 38.462 9.51 0.00 45.30 3.06
1455 1472 5.812642 AGTAAACTCTTGCTGATTGATACGG 59.187 40.000 0.00 0.00 0.00 4.02
1457 1474 4.052159 ACTCTTGCTGATTGATACGGAG 57.948 45.455 0.00 0.00 0.00 4.63
1488 1505 9.927668 AATAATTTAGGAATTTTGTGTGGTGAG 57.072 29.630 0.00 0.00 36.82 3.51
1492 1509 4.787551 AGGAATTTTGTGTGGTGAGTGTA 58.212 39.130 0.00 0.00 0.00 2.90
1494 1511 4.819630 GGAATTTTGTGTGGTGAGTGTAGA 59.180 41.667 0.00 0.00 0.00 2.59
1498 1515 5.601583 TTTGTGTGGTGAGTGTAGAGTTA 57.398 39.130 0.00 0.00 0.00 2.24
1503 1520 4.830600 TGTGGTGAGTGTAGAGTTATCACA 59.169 41.667 1.85 1.85 41.58 3.58
1518 1545 6.942976 AGTTATCACAAGGGACGATAGAAAA 58.057 36.000 0.00 0.00 41.38 2.29
1521 1555 4.963373 TCACAAGGGACGATAGAAAAACA 58.037 39.130 0.00 0.00 41.38 2.83
1525 1559 6.149474 CACAAGGGACGATAGAAAAACAAGAT 59.851 38.462 0.00 0.00 41.38 2.40
1542 1576 6.293004 ACAAGATTGTTTTCAAAGTTGGGA 57.707 33.333 0.00 0.00 43.39 4.37
1543 1577 6.888105 ACAAGATTGTTTTCAAAGTTGGGAT 58.112 32.000 0.00 0.00 43.39 3.85
1545 1579 8.482128 ACAAGATTGTTTTCAAAGTTGGGATAA 58.518 29.630 0.00 0.00 43.39 1.75
1550 1584 8.443953 TTGTTTTCAAAGTTGGGATAAATTGG 57.556 30.769 0.00 0.00 36.82 3.16
1551 1585 7.796054 TGTTTTCAAAGTTGGGATAAATTGGA 58.204 30.769 0.00 0.00 0.00 3.53
1552 1586 8.267894 TGTTTTCAAAGTTGGGATAAATTGGAA 58.732 29.630 0.00 0.00 0.00 3.53
1553 1587 9.283768 GTTTTCAAAGTTGGGATAAATTGGAAT 57.716 29.630 0.00 0.00 0.00 3.01
1554 1588 9.500785 TTTTCAAAGTTGGGATAAATTGGAATC 57.499 29.630 0.00 0.00 0.00 2.52
1555 1589 7.789202 TCAAAGTTGGGATAAATTGGAATCA 57.211 32.000 0.00 0.00 0.00 2.57
1556 1590 8.378115 TCAAAGTTGGGATAAATTGGAATCAT 57.622 30.769 0.00 0.00 0.00 2.45
1557 1591 9.486123 TCAAAGTTGGGATAAATTGGAATCATA 57.514 29.630 0.00 0.00 0.00 2.15
1575 1609 7.497249 GGAATCATAATAAGATGGAGGGATTCG 59.503 40.741 0.00 0.00 39.12 3.34
1584 1618 1.312815 GGAGGGATTCGAGCCATTTG 58.687 55.000 8.43 0.00 0.00 2.32
1600 1634 5.361285 AGCCATTTGTACAGTGGTTACAAAA 59.639 36.000 22.80 6.91 43.86 2.44
1652 1689 1.663643 GCACATTGCAATGCTGATTGG 59.336 47.619 33.94 17.65 44.26 3.16
1671 1708 9.727627 CTGATTGGTTTTCTTAATATTCTCTGC 57.272 33.333 0.00 0.00 0.00 4.26
1684 1721 2.010145 TCTCTGCACTGCGATAAACC 57.990 50.000 0.00 0.00 0.00 3.27
1702 1739 2.399396 CCGTGATGGTGTGTGAAAAC 57.601 50.000 0.00 0.00 0.00 2.43
1730 1767 1.683385 GGCAGTGGGATGAAATAAGCC 59.317 52.381 0.00 0.00 0.00 4.35
1733 1770 3.480470 CAGTGGGATGAAATAAGCCGAT 58.520 45.455 0.00 0.00 0.00 4.18
1766 1803 4.024556 ACAACACAAAAGCAATCTCTCTCG 60.025 41.667 0.00 0.00 0.00 4.04
1784 1821 3.695060 TCTCGGTTCTCTCTGACCATTAC 59.305 47.826 0.00 0.00 0.00 1.89
1786 1823 3.444034 TCGGTTCTCTCTGACCATTACAG 59.556 47.826 0.00 0.00 36.80 2.74
1790 1827 6.334202 GGTTCTCTCTGACCATTACAGTTAG 58.666 44.000 0.00 0.00 36.81 2.34
1831 1868 3.426787 TGCTAAATCTCGGGGTTTTCA 57.573 42.857 0.00 0.00 0.00 2.69
1852 1889 2.919666 ATGCTATTTTGGTGTCGTGC 57.080 45.000 0.00 0.00 0.00 5.34
1859 1896 1.169577 TTTGGTGTCGTGCTTGTGTT 58.830 45.000 0.00 0.00 0.00 3.32
1893 1930 3.907894 TGTGCATTAAACCGAGTTTCC 57.092 42.857 5.46 0.00 37.01 3.13
1894 1931 3.215151 TGTGCATTAAACCGAGTTTCCA 58.785 40.909 5.46 0.00 37.01 3.53
1906 1943 4.764823 ACCGAGTTTCCAAAATGCTGATTA 59.235 37.500 0.00 0.00 0.00 1.75
1924 1961 5.679601 TGATTATCGGTTTGATCCATGTCA 58.320 37.500 0.00 0.00 38.57 3.58
2045 2082 6.254281 TGCCTATTTCAGAGTTAACTTTGC 57.746 37.500 18.84 8.02 0.00 3.68
2048 2085 6.072452 GCCTATTTCAGAGTTAACTTTGCACT 60.072 38.462 18.84 7.41 0.00 4.40
2069 2106 9.370930 TGCACTAGGTACTTTAGCCTATTTATA 57.629 33.333 0.00 0.00 41.75 0.98
2105 2142 7.823745 ATGGTAATAGGGAACATTCATTGAC 57.176 36.000 0.00 0.00 0.00 3.18
2149 2186 7.985184 TGCGGTAATACACTATTGATTTCTCTT 59.015 33.333 0.00 0.00 0.00 2.85
2183 2220 2.905415 AGATGGGCTGTTGATGGAAA 57.095 45.000 0.00 0.00 0.00 3.13
2231 2268 8.506168 AGTTTGAATTTCTTCAGTCACTTGTA 57.494 30.769 0.00 0.00 42.19 2.41
2250 2287 8.349983 CACTTGTAAAAGCACCTATAAGTTTGT 58.650 33.333 0.00 0.00 29.94 2.83
2259 2296 5.235516 CACCTATAAGTTTGTCGTTGACCT 58.764 41.667 0.00 0.00 0.00 3.85
2384 2421 5.607477 TGTTATATCGGTCATGTCCTTTCC 58.393 41.667 7.41 0.00 0.00 3.13
2389 2426 0.608035 GGTCATGTCCTTTCCGCCAA 60.608 55.000 1.28 0.00 0.00 4.52
2433 2472 7.812191 CCACTTTGTTTAATGTGCAAGCTTATA 59.188 33.333 0.00 0.00 39.39 0.98
2436 2475 9.357652 CTTTGTTTAATGTGCAAGCTTATACAT 57.642 29.630 17.42 17.42 35.43 2.29
2442 2481 9.613428 TTAATGTGCAAGCTTATACATACTTCT 57.387 29.630 21.28 12.07 33.70 2.85
2443 2482 6.908870 TGTGCAAGCTTATACATACTTCTG 57.091 37.500 0.00 0.00 0.00 3.02
2448 2489 8.792633 TGCAAGCTTATACATACTTCTGTTTTT 58.207 29.630 0.00 0.00 0.00 1.94
2517 2558 5.895636 TTGGATGACTTATTGCATTCGTT 57.104 34.783 0.00 0.00 0.00 3.85
2534 2575 2.100584 TCGTTGAATTGTTGGCTGCTTT 59.899 40.909 0.00 0.00 0.00 3.51
2535 2576 2.472488 CGTTGAATTGTTGGCTGCTTTC 59.528 45.455 0.00 0.00 0.00 2.62
2537 2578 4.060205 GTTGAATTGTTGGCTGCTTTCAT 58.940 39.130 0.00 0.00 0.00 2.57
2541 2582 6.465948 TGAATTGTTGGCTGCTTTCATATTT 58.534 32.000 0.00 0.00 0.00 1.40
2565 2606 8.736751 TTTGAAAACGCCAGAATAAAGTTATC 57.263 30.769 0.00 0.00 0.00 1.75
2592 2633 8.409358 AAATGATATTACCTTGGCCTATCAAC 57.591 34.615 3.32 0.00 33.78 3.18
2593 2634 6.508030 TGATATTACCTTGGCCTATCAACA 57.492 37.500 3.32 0.00 0.00 3.33
2594 2635 6.905736 TGATATTACCTTGGCCTATCAACAA 58.094 36.000 3.32 0.00 0.00 2.83
2595 2636 7.526041 TGATATTACCTTGGCCTATCAACAAT 58.474 34.615 3.32 0.00 0.00 2.71
2596 2637 8.004215 TGATATTACCTTGGCCTATCAACAATT 58.996 33.333 3.32 0.00 0.00 2.32
2597 2638 6.715347 ATTACCTTGGCCTATCAACAATTC 57.285 37.500 3.32 0.00 0.00 2.17
2598 2639 4.046286 ACCTTGGCCTATCAACAATTCA 57.954 40.909 3.32 0.00 0.00 2.57
2599 2640 4.415596 ACCTTGGCCTATCAACAATTCAA 58.584 39.130 3.32 0.00 0.00 2.69
2622 2663 1.000496 GCCCGAGTACTACTGTATGGC 60.000 57.143 0.00 0.00 0.00 4.40
2640 2681 3.661944 TGGCAGCATGTAAAAATGGTTG 58.338 40.909 0.00 0.00 36.15 3.77
2712 2759 4.078537 TGTACATGGACATTCTTTGGTGG 58.921 43.478 6.68 0.00 0.00 4.61
2730 2777 9.981114 CTTTGGTGGTCAAGTTTAAATATTCTT 57.019 29.630 0.00 0.00 36.62 2.52
2774 2831 9.598517 AATTAGTGCTCATTGACAAAAGAAAAA 57.401 25.926 5.39 0.00 0.00 1.94
2775 2832 9.768662 ATTAGTGCTCATTGACAAAAGAAAAAT 57.231 25.926 5.39 0.00 0.00 1.82
2776 2833 7.473027 AGTGCTCATTGACAAAAGAAAAATG 57.527 32.000 5.39 0.00 0.00 2.32
2778 2835 5.050904 TGCTCATTGACAAAAGAAAAATGCG 60.051 36.000 5.39 0.00 0.00 4.73
2800 2857 6.183360 TGCGTCTCTATCATGAAGATTGGTTA 60.183 38.462 0.00 0.00 38.19 2.85
2801 2858 6.364706 GCGTCTCTATCATGAAGATTGGTTAG 59.635 42.308 0.00 0.00 38.19 2.34
2805 2862 9.206690 TCTCTATCATGAAGATTGGTTAGAGTT 57.793 33.333 18.46 0.00 38.19 3.01
2850 2908 0.754957 TCTAGGCAGCAGAGAGGCTC 60.755 60.000 6.34 6.34 43.68 4.70
2938 2996 4.179298 CAAGAGATCTCGATTTGCTGTCA 58.821 43.478 16.97 0.00 34.09 3.58
2952 3010 4.389890 TGCTGTCAAAACAATGCTTTCT 57.610 36.364 0.00 0.00 34.24 2.52
2959 3017 2.977405 AACAATGCTTTCTGCGTCTC 57.023 45.000 0.00 0.00 46.63 3.36
3038 3096 8.949177 ACATTTTCTAATTATAAACCGTTCCGT 58.051 29.630 0.00 0.00 0.00 4.69
3039 3097 9.777575 CATTTTCTAATTATAAACCGTTCCGTT 57.222 29.630 0.00 0.00 0.00 4.44
3041 3099 9.824534 TTTTCTAATTATAAACCGTTCCGTTTC 57.175 29.630 0.00 0.00 37.20 2.78
3042 3100 7.220599 TCTAATTATAAACCGTTCCGTTTCG 57.779 36.000 0.00 0.00 37.20 3.46
3043 3101 7.032580 TCTAATTATAAACCGTTCCGTTTCGA 58.967 34.615 0.00 0.00 37.20 3.71
3044 3102 6.479095 AATTATAAACCGTTCCGTTTCGAA 57.521 33.333 0.00 0.00 37.20 3.71
3045 3103 5.914085 TTATAAACCGTTCCGTTTCGAAA 57.086 34.783 6.47 6.47 37.20 3.46
3046 3104 6.479095 TTATAAACCGTTCCGTTTCGAAAT 57.521 33.333 14.69 0.00 37.20 2.17
3047 3105 7.588143 TTATAAACCGTTCCGTTTCGAAATA 57.412 32.000 14.69 0.06 37.20 1.40
3048 3106 4.809815 AAACCGTTCCGTTTCGAAATAA 57.190 36.364 14.69 6.53 29.99 1.40
3049 3107 4.809815 AACCGTTCCGTTTCGAAATAAA 57.190 36.364 14.69 6.20 0.00 1.40
3050 3108 4.809815 ACCGTTCCGTTTCGAAATAAAA 57.190 36.364 14.69 5.85 0.00 1.52
3051 3109 5.361135 ACCGTTCCGTTTCGAAATAAAAT 57.639 34.783 14.69 0.00 0.00 1.82
3052 3110 6.479095 ACCGTTCCGTTTCGAAATAAAATA 57.521 33.333 14.69 0.00 0.00 1.40
3053 3111 6.896969 ACCGTTCCGTTTCGAAATAAAATAA 58.103 32.000 14.69 1.00 0.00 1.40
3130 3188 3.942829 TGACAGTCTTAATTCAGCTGGG 58.057 45.455 15.13 0.00 0.00 4.45
3135 3193 4.003648 AGTCTTAATTCAGCTGGGTTTCG 58.996 43.478 15.13 4.33 0.00 3.46
3148 3206 4.319694 GCTGGGTTTCGTTTACAAATACGT 60.320 41.667 0.00 0.00 38.79 3.57
3149 3207 5.093169 TGGGTTTCGTTTACAAATACGTG 57.907 39.130 0.00 0.00 38.79 4.49
3206 3264 6.402550 GCGTTGATGTCTGAAGTGATAACATT 60.403 38.462 0.00 0.00 31.04 2.71
3538 3597 3.966215 CGGGTTCGTTCACATGCT 58.034 55.556 0.00 0.00 0.00 3.79
3574 3633 1.216175 AGCATAATGGGTGACATGCCT 59.784 47.619 1.78 0.00 43.81 4.75
3671 3730 4.646492 TCCCCTAACGAACATACTTCTACC 59.354 45.833 0.00 0.00 0.00 3.18
3683 3742 6.106673 ACATACTTCTACCGGTGAAGAATTG 58.893 40.000 34.02 28.59 42.37 2.32
3696 3755 7.062255 CCGGTGAAGAATTGAAATTTTCTAAGC 59.938 37.037 10.33 0.66 32.05 3.09
3698 3757 8.919661 GGTGAAGAATTGAAATTTTCTAAGCTG 58.080 33.333 10.33 0.00 32.05 4.24
3699 3758 9.468532 GTGAAGAATTGAAATTTTCTAAGCTGT 57.531 29.630 10.33 0.00 32.05 4.40
3745 3804 3.903530 AAGGACAAGAATGGTTTCCCT 57.096 42.857 0.00 0.00 31.84 4.20
3760 3819 4.082408 GGTTTCCCTACATTTGTTAGTGGC 60.082 45.833 0.00 0.00 0.00 5.01
3766 3825 1.883926 ACATTTGTTAGTGGCGTTCCC 59.116 47.619 0.00 0.00 0.00 3.97
3775 3834 4.424711 GGCGTTCCCCCTGATGCA 62.425 66.667 0.00 0.00 0.00 3.96
3794 3853 3.253188 TGCATTCAGTAAAACTGGTCAGC 59.747 43.478 7.18 7.27 45.94 4.26
3849 3908 8.703336 GTCAATTTGATTTTTCCTAGTTCTTGC 58.297 33.333 1.78 0.00 0.00 4.01
3856 3915 2.859165 TCCTAGTTCTTGCCTGTTGG 57.141 50.000 0.00 0.00 0.00 3.77
3888 3947 2.239654 ACCCTACATTCCCTGTGACATG 59.760 50.000 0.00 0.00 38.92 3.21
3890 3949 3.054434 CCCTACATTCCCTGTGACATGAA 60.054 47.826 0.00 1.03 38.92 2.57
4038 4106 2.319136 TCCGTATTGACCATTTCCGG 57.681 50.000 0.00 0.00 35.41 5.14
4234 4385 0.463474 GAAGCTGGAGGGTGAGCATC 60.463 60.000 0.00 0.00 37.70 3.91
4241 4392 0.820871 GAGGGTGAGCATCGACTTCT 59.179 55.000 0.00 0.00 38.61 2.85
4248 4399 3.063180 GTGAGCATCGACTTCTTGAATGG 59.937 47.826 0.00 0.00 38.61 3.16
4249 4400 3.265791 GAGCATCGACTTCTTGAATGGT 58.734 45.455 0.00 0.00 0.00 3.55
4256 4407 5.607477 TCGACTTCTTGAATGGTACTGTTT 58.393 37.500 0.00 0.00 0.00 2.83
4279 4430 9.150348 GTTTCCTTTTCTTCACAAAATCTTTGA 57.850 29.630 6.15 0.00 0.00 2.69
4288 4439 5.165676 TCACAAAATCTTTGATGCTGATGC 58.834 37.500 6.15 0.00 40.20 3.91
4379 4530 8.936864 GCTGTTGGTAGAATAAATATAATCGCT 58.063 33.333 0.00 0.00 0.00 4.93
4394 4545 3.914426 ATCGCTGAAGACCTGGTAAAT 57.086 42.857 0.00 0.00 0.00 1.40
4403 4554 3.725634 AGACCTGGTAAATACTGGAGCT 58.274 45.455 0.00 0.00 0.00 4.09
4427 4578 7.063426 GCTTTTTCTTTTAACTGCTGAAAGTGT 59.937 33.333 0.00 0.00 35.30 3.55
4449 4600 7.776969 AGTGTAATCTGGAATCAAATGCATAGT 59.223 33.333 0.00 0.00 0.00 2.12
4450 4601 8.408601 GTGTAATCTGGAATCAAATGCATAGTT 58.591 33.333 0.00 0.00 0.00 2.24
4476 4630 4.832266 TGGTGGATTTGTGCAAACTTAGAT 59.168 37.500 0.00 0.00 32.51 1.98
4540 4694 8.877864 TGTTGTGGAGTATTAAAATTGGATCT 57.122 30.769 0.00 0.00 0.00 2.75
4548 4702 6.708054 AGTATTAAAATTGGATCTGAGAGCGG 59.292 38.462 0.00 0.00 0.00 5.52
4549 4703 3.356529 AAAATTGGATCTGAGAGCGGT 57.643 42.857 0.00 0.00 0.00 5.68
4552 4706 0.976641 TTGGATCTGAGAGCGGTTGT 59.023 50.000 0.00 0.00 0.00 3.32
4556 4710 2.166664 GGATCTGAGAGCGGTTGTAGTT 59.833 50.000 0.00 0.00 0.00 2.24
4566 4720 2.664698 GCGGTTGTAGTTTAGTTGCAGC 60.665 50.000 0.00 0.00 0.00 5.25
4638 4792 5.602145 CCCCATGGGTCAAATACACAATTAT 59.398 40.000 29.33 0.00 46.98 1.28
4731 4896 2.335092 CTGGTCAGCTGGCCCCATAG 62.335 65.000 33.79 20.62 39.61 2.23
4748 4913 4.526970 CCATAGTCTTAATGTGGCAACCT 58.473 43.478 0.00 0.00 0.00 3.50
4749 4914 4.949856 CCATAGTCTTAATGTGGCAACCTT 59.050 41.667 0.00 0.00 0.00 3.50
4750 4915 5.418840 CCATAGTCTTAATGTGGCAACCTTT 59.581 40.000 0.00 0.00 0.00 3.11
4805 4970 5.641789 ACTAATTGTAGGGGGTGATAACC 57.358 43.478 0.00 0.00 0.00 2.85
4844 5009 1.213296 GGAAGTCTATTGGGGCTCCA 58.787 55.000 0.00 0.00 42.25 3.86
4879 5044 5.962433 TCTTCAGTTCGGTAATAGTCCAAG 58.038 41.667 0.00 0.00 0.00 3.61
4884 5049 3.241067 TCGGTAATAGTCCAAGTGCAC 57.759 47.619 9.40 9.40 0.00 4.57
4890 5055 5.753921 GGTAATAGTCCAAGTGCACTATGAC 59.246 44.000 28.39 28.39 36.66 3.06
4898 5063 2.636830 AGTGCACTATGACCATGCTTC 58.363 47.619 20.16 0.00 40.13 3.86
4924 5089 6.672266 TTCTATAAGGAACTATGGCTCTGG 57.328 41.667 0.00 0.00 38.49 3.86
4930 5095 3.116551 AGGAACTATGGCTCTGGGAGTAT 60.117 47.826 0.00 0.00 36.02 2.12
4943 5108 7.309621 GGCTCTGGGAGTATACGTGAAATATTA 60.310 40.741 0.00 0.00 31.39 0.98
4994 5159 3.343617 TGTATACTGGACAGCTTTTGGC 58.656 45.455 4.17 0.00 42.19 4.52
5039 5204 8.184192 CACTTACCTCATAACCATGAATTGAAC 58.816 37.037 0.00 0.00 40.66 3.18
5122 5288 8.981647 CAAAACTCCTTTATTCACATCTTTTGG 58.018 33.333 0.00 0.00 0.00 3.28
5255 5422 5.186198 AGAAGCAAACTGTCAGTGTTTAGT 58.814 37.500 6.18 0.00 36.07 2.24
5278 5445 2.176045 ACCATGACACGATGTCTGGTA 58.824 47.619 23.58 8.35 46.72 3.25
5299 5466 6.901300 TGGTACCATGTCTTCCTAATCTTACT 59.099 38.462 11.60 0.00 0.00 2.24
5379 5546 0.815615 GGGCGCTAATTGCTACTGCT 60.816 55.000 7.64 0.00 40.48 4.24
5394 5561 0.037882 CTGCTCTCTCTTCCGTTGCA 60.038 55.000 0.00 0.00 0.00 4.08
5511 5678 5.574443 GCCTGCTTGTAAAAGAGCTAATTTG 59.426 40.000 0.00 0.00 39.60 2.32
5681 5851 3.726517 CGGCCGGCTGTGAAGTTG 61.727 66.667 27.83 1.66 0.00 3.16
6074 6271 2.297129 GCCCTCAGCTGGAAGGAGT 61.297 63.158 20.42 0.00 38.99 3.85
6077 6274 1.208293 CCCTCAGCTGGAAGGAGTTAC 59.792 57.143 20.42 0.00 0.00 2.50
6109 6306 5.784578 ATTTTACCTTGCCGGATTAATCC 57.215 39.130 22.63 22.63 43.65 3.01
6223 6420 0.532862 AGCACAGGAACGTTGAGTGG 60.533 55.000 19.61 4.57 0.00 4.00
6224 6421 0.814010 GCACAGGAACGTTGAGTGGT 60.814 55.000 19.61 4.74 0.00 4.16
6225 6422 1.539496 GCACAGGAACGTTGAGTGGTA 60.539 52.381 19.61 0.00 0.00 3.25
6226 6423 2.132762 CACAGGAACGTTGAGTGGTAC 58.867 52.381 5.00 0.00 0.00 3.34
6227 6424 2.037144 ACAGGAACGTTGAGTGGTACT 58.963 47.619 5.00 0.00 0.00 2.73
6228 6425 2.223971 ACAGGAACGTTGAGTGGTACTG 60.224 50.000 5.00 0.00 0.00 2.74
6229 6426 2.037144 AGGAACGTTGAGTGGTACTGT 58.963 47.619 5.00 0.00 0.00 3.55
6230 6427 2.132762 GGAACGTTGAGTGGTACTGTG 58.867 52.381 5.00 0.00 0.00 3.66
6231 6428 2.132762 GAACGTTGAGTGGTACTGTGG 58.867 52.381 5.00 0.00 0.00 4.17
6261 6459 4.078537 TCCAGCATTCGAATGGAAAAGAA 58.921 39.130 33.05 4.88 40.13 2.52
6273 6471 9.062524 TCGAATGGAAAAGAAGAAAAAGACATA 57.937 29.630 0.00 0.00 0.00 2.29
6277 6475 9.750125 ATGGAAAAGAAGAAAAAGACATAACAC 57.250 29.630 0.00 0.00 0.00 3.32
6278 6476 8.744652 TGGAAAAGAAGAAAAAGACATAACACA 58.255 29.630 0.00 0.00 0.00 3.72
6320 6519 1.228124 CACCGTCCTCAAGGGCAAA 60.228 57.895 0.95 0.00 40.62 3.68
6321 6520 0.609131 CACCGTCCTCAAGGGCAAAT 60.609 55.000 0.95 0.00 40.62 2.32
6328 6530 0.457337 CTCAAGGGCAAATGCTTCGC 60.457 55.000 5.25 0.00 41.70 4.70
6329 6531 0.895100 TCAAGGGCAAATGCTTCGCT 60.895 50.000 5.25 0.00 41.70 4.93
6345 6547 0.688087 CGCTAGGAGGAAAGGGACCT 60.688 60.000 0.00 0.00 40.80 3.85
6346 6548 1.585895 GCTAGGAGGAAAGGGACCTT 58.414 55.000 0.00 0.00 37.93 3.50
6355 6557 4.480115 AGGAAAGGGACCTTTTTGTTAGG 58.520 43.478 16.81 0.00 45.16 2.69
6356 6558 4.169264 AGGAAAGGGACCTTTTTGTTAGGA 59.831 41.667 16.81 0.00 45.16 2.94
6357 6559 4.897076 GGAAAGGGACCTTTTTGTTAGGAA 59.103 41.667 16.81 0.00 45.16 3.36
6377 6579 9.807921 TTAGGAAAAAGGAGTAATGAAATGAGT 57.192 29.630 0.00 0.00 0.00 3.41
6388 6590 9.118300 GAGTAATGAAATGAGTCATGAGGAAAT 57.882 33.333 6.34 0.00 38.28 2.17
6391 6593 7.814264 ATGAAATGAGTCATGAGGAAATACC 57.186 36.000 6.34 0.00 36.86 2.73
6398 6600 1.881973 CATGAGGAAATACCGGGCATG 59.118 52.381 6.32 2.69 44.74 4.06
6421 6633 5.483937 TGTATGCAATATACTAGGGACCAGG 59.516 44.000 0.00 0.00 0.00 4.45
6430 6642 1.858739 TAGGGACCAGGGCGCAAAAT 61.859 55.000 12.95 0.00 0.00 1.82
6450 6662 1.289066 TCGAAAGAGCACCGTCCTG 59.711 57.895 0.00 0.00 34.84 3.86
6454 6666 2.738213 AAAGAGCACCGTCCTGCAGG 62.738 60.000 27.87 27.87 39.86 4.85
6455 6667 4.008933 GAGCACCGTCCTGCAGGT 62.009 66.667 31.58 11.40 42.34 4.00
6480 6692 3.822167 GGAGGACCTCGTTAGAAGGATAG 59.178 52.174 15.46 0.00 0.00 2.08
6483 6695 2.892215 GACCTCGTTAGAAGGATAGGGG 59.108 54.545 0.00 0.00 0.00 4.79
6488 6700 2.409570 GTTAGAAGGATAGGGGGCAGT 58.590 52.381 0.00 0.00 0.00 4.40
6513 6725 5.024785 AGGGATCTAGCCGTAAGAAAAAG 57.975 43.478 0.00 0.00 43.02 2.27
6514 6726 4.127907 GGGATCTAGCCGTAAGAAAAAGG 58.872 47.826 0.00 0.00 43.02 3.11
6520 6732 3.421844 AGCCGTAAGAAAAAGGAGCAAT 58.578 40.909 0.00 0.00 43.02 3.56
6521 6733 3.826729 AGCCGTAAGAAAAAGGAGCAATT 59.173 39.130 0.00 0.00 43.02 2.32
6523 6735 5.093457 GCCGTAAGAAAAAGGAGCAATTAC 58.907 41.667 0.00 0.00 43.02 1.89
6535 6747 4.520492 AGGAGCAATTACAGGACACAAAAG 59.480 41.667 0.00 0.00 0.00 2.27
6572 6784 3.366052 CCTGCAAAATACCAGGTACCT 57.634 47.619 9.21 9.21 42.87 3.08
6573 6785 4.497291 CCTGCAAAATACCAGGTACCTA 57.503 45.455 15.80 0.00 42.87 3.08
6576 6788 3.261390 TGCAAAATACCAGGTACCTACGT 59.739 43.478 15.80 15.92 0.00 3.57
6620 6833 2.095768 CCATTTCTCGATTTGTGCGTGT 60.096 45.455 0.00 0.00 0.00 4.49
6635 6848 2.046023 TGTCATCCTTGCGCAGGG 60.046 61.111 31.27 31.27 44.12 4.45
6636 6849 2.825836 GTCATCCTTGCGCAGGGG 60.826 66.667 34.94 27.37 44.12 4.79
6637 6850 4.802051 TCATCCTTGCGCAGGGGC 62.802 66.667 34.94 0.86 44.12 5.80
6646 6859 2.203394 CGCAGGGGCCATGCTAAT 60.203 61.111 36.49 0.00 41.61 1.73
6647 6860 2.263741 CGCAGGGGCCATGCTAATC 61.264 63.158 36.49 11.88 41.61 1.75
6648 6861 1.152368 GCAGGGGCCATGCTAATCT 59.848 57.895 33.99 1.91 40.59 2.40
6649 6862 0.468771 GCAGGGGCCATGCTAATCTT 60.469 55.000 33.99 0.00 40.59 2.40
6650 6863 1.613836 CAGGGGCCATGCTAATCTTC 58.386 55.000 4.75 0.00 0.00 2.87
6651 6864 1.144503 CAGGGGCCATGCTAATCTTCT 59.855 52.381 4.75 0.00 0.00 2.85
6652 6865 1.423161 AGGGGCCATGCTAATCTTCTC 59.577 52.381 4.39 0.00 0.00 2.87
6653 6866 1.423161 GGGGCCATGCTAATCTTCTCT 59.577 52.381 4.39 0.00 0.00 3.10
6654 6867 2.502295 GGGCCATGCTAATCTTCTCTG 58.498 52.381 4.39 0.00 0.00 3.35
6655 6868 2.158696 GGGCCATGCTAATCTTCTCTGT 60.159 50.000 4.39 0.00 0.00 3.41
6656 6869 3.071602 GGGCCATGCTAATCTTCTCTGTA 59.928 47.826 4.39 0.00 0.00 2.74
6657 6870 4.263243 GGGCCATGCTAATCTTCTCTGTAT 60.263 45.833 4.39 0.00 0.00 2.29
6658 6871 4.934602 GGCCATGCTAATCTTCTCTGTATC 59.065 45.833 0.00 0.00 0.00 2.24
6659 6872 4.624882 GCCATGCTAATCTTCTCTGTATCG 59.375 45.833 0.00 0.00 0.00 2.92
6660 6873 5.777802 CCATGCTAATCTTCTCTGTATCGT 58.222 41.667 0.00 0.00 0.00 3.73
6661 6874 6.219473 CCATGCTAATCTTCTCTGTATCGTT 58.781 40.000 0.00 0.00 0.00 3.85
6662 6875 6.364706 CCATGCTAATCTTCTCTGTATCGTTC 59.635 42.308 0.00 0.00 0.00 3.95
6663 6876 5.833082 TGCTAATCTTCTCTGTATCGTTCC 58.167 41.667 0.00 0.00 0.00 3.62
6664 6877 5.359860 TGCTAATCTTCTCTGTATCGTTCCA 59.640 40.000 0.00 0.00 0.00 3.53
6665 6878 6.127451 TGCTAATCTTCTCTGTATCGTTCCAA 60.127 38.462 0.00 0.00 0.00 3.53
6666 6879 6.926272 GCTAATCTTCTCTGTATCGTTCCAAT 59.074 38.462 0.00 0.00 0.00 3.16
6667 6880 7.439655 GCTAATCTTCTCTGTATCGTTCCAATT 59.560 37.037 0.00 0.00 0.00 2.32
6668 6881 9.319143 CTAATCTTCTCTGTATCGTTCCAATTT 57.681 33.333 0.00 0.00 0.00 1.82
6669 6882 8.567285 AATCTTCTCTGTATCGTTCCAATTTT 57.433 30.769 0.00 0.00 0.00 1.82
6670 6883 9.667107 AATCTTCTCTGTATCGTTCCAATTTTA 57.333 29.630 0.00 0.00 0.00 1.52
6671 6884 9.838339 ATCTTCTCTGTATCGTTCCAATTTTAT 57.162 29.630 0.00 0.00 0.00 1.40
6672 6885 9.314321 TCTTCTCTGTATCGTTCCAATTTTATC 57.686 33.333 0.00 0.00 0.00 1.75
6673 6886 7.694388 TCTCTGTATCGTTCCAATTTTATCG 57.306 36.000 0.00 0.00 0.00 2.92
6674 6887 6.700081 TCTCTGTATCGTTCCAATTTTATCGG 59.300 38.462 0.00 0.00 0.00 4.18
6675 6888 6.575267 TCTGTATCGTTCCAATTTTATCGGA 58.425 36.000 0.00 0.00 0.00 4.55
6676 6889 7.214381 TCTGTATCGTTCCAATTTTATCGGAT 58.786 34.615 0.00 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
143 144 9.754382 GGTTCATAAGTACTATGGTCGATAAAA 57.246 33.333 0.00 0.00 38.39 1.52
144 145 8.916062 TGGTTCATAAGTACTATGGTCGATAAA 58.084 33.333 0.00 0.00 38.39 1.40
204 205 4.536765 ACTGGTTGAAGTCTCCAACAAAT 58.463 39.130 4.21 0.00 44.07 2.32
271 272 3.159347 ATTCCTCCGGCGTACCCC 61.159 66.667 6.01 0.00 0.00 4.95
280 281 1.399440 CACACATCAAGCATTCCTCCG 59.601 52.381 0.00 0.00 0.00 4.63
287 288 1.250328 CACCACCACACATCAAGCAT 58.750 50.000 0.00 0.00 0.00 3.79
313 314 3.064207 TCAAACACTCCACTACGATTGC 58.936 45.455 0.00 0.00 0.00 3.56
319 320 3.498397 CCACACATCAAACACTCCACTAC 59.502 47.826 0.00 0.00 0.00 2.73
344 345 4.278170 TCCTACAACGTTAAGTCGAGGAAA 59.722 41.667 0.00 0.00 34.14 3.13
382 383 1.075542 GTCCATCATCGTCGTTGCAA 58.924 50.000 0.00 0.00 0.00 4.08
422 423 7.223584 TCACTTCTTTTCTTATGACACCATCA 58.776 34.615 0.00 0.00 43.13 3.07
433 434 8.567948 CATAAGTTGCCTTCACTTCTTTTCTTA 58.432 33.333 0.00 0.00 31.89 2.10
440 441 4.006319 GCTCATAAGTTGCCTTCACTTCT 58.994 43.478 0.00 0.00 31.89 2.85
441 442 3.181516 CGCTCATAAGTTGCCTTCACTTC 60.182 47.826 0.00 0.00 31.89 3.01
451 452 0.999406 CCCGACACGCTCATAAGTTG 59.001 55.000 0.00 0.00 0.00 3.16
456 457 1.076850 TACCCCCGACACGCTCATA 60.077 57.895 0.00 0.00 0.00 2.15
485 490 3.189606 TCCCTCTCTCTCACTCTCTCTT 58.810 50.000 0.00 0.00 0.00 2.85
494 499 1.221635 CTCTCCCTCCCTCTCTCTCA 58.778 60.000 0.00 0.00 0.00 3.27
504 509 1.158007 ATCTCTCTCCCTCTCCCTCC 58.842 60.000 0.00 0.00 0.00 4.30
508 513 4.380843 TGTATCATCTCTCTCCCTCTCC 57.619 50.000 0.00 0.00 0.00 3.71
809 819 3.469863 TATTCCGGTGGGATGGCGC 62.470 63.158 0.00 0.00 43.41 6.53
812 822 1.073199 GCCTATTCCGGTGGGATGG 59.927 63.158 0.00 0.00 43.41 3.51
855 865 4.760047 GGTGGCGTGGCGTGAGAT 62.760 66.667 0.00 0.00 0.00 2.75
913 923 3.302347 GAGGGAGATATGGGCGCGG 62.302 68.421 8.83 0.00 0.00 6.46
931 941 3.449918 AGGAGGAAGAAGGAAGAGAAGG 58.550 50.000 0.00 0.00 0.00 3.46
932 942 3.450817 GGAGGAGGAAGAAGGAAGAGAAG 59.549 52.174 0.00 0.00 0.00 2.85
933 943 3.445987 GGAGGAGGAAGAAGGAAGAGAA 58.554 50.000 0.00 0.00 0.00 2.87
934 944 2.292587 GGGAGGAGGAAGAAGGAAGAGA 60.293 54.545 0.00 0.00 0.00 3.10
935 945 2.115427 GGGAGGAGGAAGAAGGAAGAG 58.885 57.143 0.00 0.00 0.00 2.85
936 946 1.273896 GGGGAGGAGGAAGAAGGAAGA 60.274 57.143 0.00 0.00 0.00 2.87
937 947 1.208706 GGGGAGGAGGAAGAAGGAAG 58.791 60.000 0.00 0.00 0.00 3.46
938 948 0.253207 GGGGGAGGAGGAAGAAGGAA 60.253 60.000 0.00 0.00 0.00 3.36
939 949 1.396594 GGGGGAGGAGGAAGAAGGA 59.603 63.158 0.00 0.00 0.00 3.36
940 950 0.327964 ATGGGGGAGGAGGAAGAAGG 60.328 60.000 0.00 0.00 0.00 3.46
941 951 1.492599 GAATGGGGGAGGAGGAAGAAG 59.507 57.143 0.00 0.00 0.00 2.85
942 952 1.596496 GAATGGGGGAGGAGGAAGAA 58.404 55.000 0.00 0.00 0.00 2.52
1306 1321 3.093278 GAGGAACGCGATTGCCTG 58.907 61.111 15.93 0.00 38.08 4.85
1396 1411 3.920093 AACCTAACCGGGCAGCAGC 62.920 63.158 6.32 0.00 41.10 5.25
1403 1418 1.319614 CCAATGGCAACCTAACCGGG 61.320 60.000 6.32 0.00 36.97 5.73
1438 1455 4.645136 ACTACTCCGTATCAATCAGCAAGA 59.355 41.667 0.00 0.00 0.00 3.02
1441 1458 6.650427 ATTACTACTCCGTATCAATCAGCA 57.350 37.500 0.00 0.00 0.00 4.41
1462 1479 9.927668 CTCACCACACAAAATTCCTAAATTATT 57.072 29.630 0.00 0.00 33.93 1.40
1463 1480 9.088987 ACTCACCACACAAAATTCCTAAATTAT 57.911 29.630 0.00 0.00 33.93 1.28
1464 1481 8.356657 CACTCACCACACAAAATTCCTAAATTA 58.643 33.333 0.00 0.00 33.93 1.40
1465 1482 7.147742 ACACTCACCACACAAAATTCCTAAATT 60.148 33.333 0.00 0.00 36.64 1.82
1466 1483 6.323739 ACACTCACCACACAAAATTCCTAAAT 59.676 34.615 0.00 0.00 0.00 1.40
1467 1484 5.654650 ACACTCACCACACAAAATTCCTAAA 59.345 36.000 0.00 0.00 0.00 1.85
1468 1485 5.197451 ACACTCACCACACAAAATTCCTAA 58.803 37.500 0.00 0.00 0.00 2.69
1469 1486 4.787551 ACACTCACCACACAAAATTCCTA 58.212 39.130 0.00 0.00 0.00 2.94
1470 1487 3.631250 ACACTCACCACACAAAATTCCT 58.369 40.909 0.00 0.00 0.00 3.36
1471 1488 4.819630 TCTACACTCACCACACAAAATTCC 59.180 41.667 0.00 0.00 0.00 3.01
1472 1489 5.527582 ACTCTACACTCACCACACAAAATTC 59.472 40.000 0.00 0.00 0.00 2.17
1473 1490 5.437060 ACTCTACACTCACCACACAAAATT 58.563 37.500 0.00 0.00 0.00 1.82
1474 1491 5.036117 ACTCTACACTCACCACACAAAAT 57.964 39.130 0.00 0.00 0.00 1.82
1482 1499 5.047306 CCTTGTGATAACTCTACACTCACCA 60.047 44.000 0.00 0.00 36.29 4.17
1483 1500 5.411781 CCTTGTGATAACTCTACACTCACC 58.588 45.833 0.00 0.00 36.29 4.02
1487 1504 4.158025 CGTCCCTTGTGATAACTCTACACT 59.842 45.833 0.00 0.00 35.83 3.55
1488 1505 4.157289 TCGTCCCTTGTGATAACTCTACAC 59.843 45.833 0.00 0.00 35.45 2.90
1492 1509 5.446860 TCTATCGTCCCTTGTGATAACTCT 58.553 41.667 0.00 0.00 0.00 3.24
1494 1511 6.540438 TTTCTATCGTCCCTTGTGATAACT 57.460 37.500 0.00 0.00 0.00 2.24
1498 1515 5.556915 TGTTTTTCTATCGTCCCTTGTGAT 58.443 37.500 0.00 0.00 0.00 3.06
1503 1520 6.715264 ACAATCTTGTTTTTCTATCGTCCCTT 59.285 34.615 0.00 0.00 38.47 3.95
1525 1559 8.267894 TCCAATTTATCCCAACTTTGAAAACAA 58.732 29.630 0.00 0.00 0.00 2.83
1531 1565 7.789202 TGATTCCAATTTATCCCAACTTTGA 57.211 32.000 0.00 0.00 0.00 2.69
1545 1579 8.681584 TCCCTCCATCTTATTATGATTCCAATT 58.318 33.333 0.00 0.00 0.00 2.32
1547 1581 7.646654 TCCCTCCATCTTATTATGATTCCAA 57.353 36.000 0.00 0.00 0.00 3.53
1548 1582 7.835728 ATCCCTCCATCTTATTATGATTCCA 57.164 36.000 0.00 0.00 0.00 3.53
1549 1583 7.497249 CGAATCCCTCCATCTTATTATGATTCC 59.503 40.741 0.00 0.00 34.72 3.01
1550 1584 8.260818 TCGAATCCCTCCATCTTATTATGATTC 58.739 37.037 0.00 0.00 34.81 2.52
1551 1585 8.150827 TCGAATCCCTCCATCTTATTATGATT 57.849 34.615 0.00 0.00 0.00 2.57
1552 1586 7.634649 GCTCGAATCCCTCCATCTTATTATGAT 60.635 40.741 0.00 0.00 0.00 2.45
1553 1587 6.351371 GCTCGAATCCCTCCATCTTATTATGA 60.351 42.308 0.00 0.00 0.00 2.15
1554 1588 5.814705 GCTCGAATCCCTCCATCTTATTATG 59.185 44.000 0.00 0.00 0.00 1.90
1555 1589 5.104735 GGCTCGAATCCCTCCATCTTATTAT 60.105 44.000 0.00 0.00 0.00 1.28
1556 1590 4.223032 GGCTCGAATCCCTCCATCTTATTA 59.777 45.833 0.00 0.00 0.00 0.98
1557 1591 3.008485 GGCTCGAATCCCTCCATCTTATT 59.992 47.826 0.00 0.00 0.00 1.40
1558 1592 2.569404 GGCTCGAATCCCTCCATCTTAT 59.431 50.000 0.00 0.00 0.00 1.73
1575 1609 4.069304 TGTAACCACTGTACAAATGGCTC 58.931 43.478 20.78 13.55 36.96 4.70
1600 1634 9.840427 GAATGTTAAACTGTGCTACATTGTATT 57.160 29.630 15.07 0.00 38.97 1.89
1652 1689 6.684555 CGCAGTGCAGAGAATATTAAGAAAAC 59.315 38.462 16.83 0.00 0.00 2.43
1671 1708 1.327460 CCATCACGGTTTATCGCAGTG 59.673 52.381 0.00 0.00 0.00 3.66
1684 1721 1.329292 ACGTTTTCACACACCATCACG 59.671 47.619 0.00 0.00 0.00 4.35
1694 1731 0.533085 TGCCCGATCACGTTTTCACA 60.533 50.000 0.00 0.00 37.88 3.58
1701 1738 4.082523 CCCACTGCCCGATCACGT 62.083 66.667 0.00 0.00 37.88 4.49
1702 1739 3.094062 ATCCCACTGCCCGATCACG 62.094 63.158 0.00 0.00 39.43 4.35
1730 1767 3.894782 TGTGTTGTTTCATGTCCATCG 57.105 42.857 0.00 0.00 0.00 3.84
1733 1770 4.180057 GCTTTTGTGTTGTTTCATGTCCA 58.820 39.130 0.00 0.00 0.00 4.02
1766 1803 4.810191 ACTGTAATGGTCAGAGAGAACC 57.190 45.455 0.00 0.00 36.81 3.62
1784 1821 6.498304 AGCAACAAAATCACTGAACTAACTG 58.502 36.000 0.00 0.00 0.00 3.16
1786 1823 7.755582 AAAGCAACAAAATCACTGAACTAAC 57.244 32.000 0.00 0.00 0.00 2.34
1790 1827 5.063817 AGCAAAAGCAACAAAATCACTGAAC 59.936 36.000 0.00 0.00 0.00 3.18
1814 1851 5.690865 AGCATATGAAAACCCCGAGATTTA 58.309 37.500 6.97 0.00 0.00 1.40
1816 1853 4.170468 AGCATATGAAAACCCCGAGATT 57.830 40.909 6.97 0.00 0.00 2.40
1819 1856 6.208644 CAAAATAGCATATGAAAACCCCGAG 58.791 40.000 6.97 0.00 0.00 4.63
1822 1859 6.048509 CACCAAAATAGCATATGAAAACCCC 58.951 40.000 6.97 0.00 0.00 4.95
1831 1868 4.199310 AGCACGACACCAAAATAGCATAT 58.801 39.130 0.00 0.00 0.00 1.78
1852 1889 6.509997 GCACAAGGCAATTAAAAGAACACAAG 60.510 38.462 0.00 0.00 43.97 3.16
1883 1920 2.582052 TCAGCATTTTGGAAACTCGGT 58.418 42.857 0.00 0.00 0.00 4.69
1885 1922 5.678483 CGATAATCAGCATTTTGGAAACTCG 59.322 40.000 0.00 0.00 0.00 4.18
1886 1923 5.973565 CCGATAATCAGCATTTTGGAAACTC 59.026 40.000 0.00 0.00 0.00 3.01
1893 1930 6.418819 GGATCAAACCGATAATCAGCATTTTG 59.581 38.462 0.00 0.00 33.17 2.44
1894 1931 6.096705 TGGATCAAACCGATAATCAGCATTTT 59.903 34.615 0.00 0.00 33.17 1.82
1906 1943 3.684908 TGTTGACATGGATCAAACCGAT 58.315 40.909 0.00 0.00 40.22 4.18
1924 1961 3.288092 GGAACAAGTGGAAGAACCTGTT 58.712 45.455 0.00 0.00 37.30 3.16
2015 2052 8.691797 AGTTAACTCTGAAATAGGCAAACAAAA 58.308 29.630 1.12 0.00 0.00 2.44
2045 2082 9.857957 GCTATAAATAGGCTAAAGTACCTAGTG 57.142 37.037 0.00 0.00 41.74 2.74
2048 2085 9.597681 ACTGCTATAAATAGGCTAAAGTACCTA 57.402 33.333 0.00 0.00 42.61 3.08
2069 2106 7.149202 TCCCTATTACCATTGAATTACTGCT 57.851 36.000 0.00 0.00 0.00 4.24
2125 2162 9.529325 TCAAGAGAAATCAATAGTGTATTACCG 57.471 33.333 0.00 0.00 0.00 4.02
2130 2167 9.323985 GCTCTTCAAGAGAAATCAATAGTGTAT 57.676 33.333 19.27 0.00 45.07 2.29
2134 2171 7.882271 ACAAGCTCTTCAAGAGAAATCAATAGT 59.118 33.333 19.27 0.31 45.07 2.12
2135 2172 8.266392 ACAAGCTCTTCAAGAGAAATCAATAG 57.734 34.615 19.27 0.00 45.07 1.73
2149 2186 3.758554 GCCCATCTTTAACAAGCTCTTCA 59.241 43.478 0.00 0.00 0.00 3.02
2183 2220 3.815401 CACAAAGGATCAGGAAGTTCGTT 59.185 43.478 0.00 0.00 0.00 3.85
2231 2268 6.261381 TCAACGACAAACTTATAGGTGCTTTT 59.739 34.615 0.00 0.00 0.00 2.27
2234 2271 4.689345 GTCAACGACAAACTTATAGGTGCT 59.311 41.667 0.00 0.00 32.09 4.40
2250 2287 5.624344 TTAAACACACAAAAGGTCAACGA 57.376 34.783 0.00 0.00 0.00 3.85
2311 2348 5.869579 AGAGGTTCTTTCAGATTAGCAACA 58.130 37.500 0.00 0.00 0.00 3.33
2397 2434 1.663695 AACAAAGTGGACAGGACGTG 58.336 50.000 0.00 0.00 0.00 4.49
2400 2437 5.519722 CACATTAAACAAAGTGGACAGGAC 58.480 41.667 0.00 0.00 0.00 3.85
2401 2438 4.037446 GCACATTAAACAAAGTGGACAGGA 59.963 41.667 0.00 0.00 32.80 3.86
2402 2439 4.202101 TGCACATTAAACAAAGTGGACAGG 60.202 41.667 0.00 0.00 32.80 4.00
2403 2440 4.930963 TGCACATTAAACAAAGTGGACAG 58.069 39.130 0.00 0.00 32.80 3.51
2404 2441 4.991153 TGCACATTAAACAAAGTGGACA 57.009 36.364 0.00 0.00 32.80 4.02
2409 2448 8.356657 TGTATAAGCTTGCACATTAAACAAAGT 58.643 29.630 9.86 0.00 0.00 2.66
2412 2451 9.781834 GTATGTATAAGCTTGCACATTAAACAA 57.218 29.630 24.26 9.67 33.78 2.83
2448 2489 5.445964 GGTAGGATAGCAAATTCAAGGGAA 58.554 41.667 0.00 0.00 39.30 3.97
2514 2555 2.138596 AAGCAGCCAACAATTCAACG 57.861 45.000 0.00 0.00 0.00 4.10
2517 2558 5.664294 ATATGAAAGCAGCCAACAATTCA 57.336 34.783 0.00 0.00 0.00 2.57
2534 2575 9.352784 CTTTATTCTGGCGTTTTCAAAATATGA 57.647 29.630 0.00 0.00 35.85 2.15
2535 2576 9.139174 ACTTTATTCTGGCGTTTTCAAAATATG 57.861 29.630 0.00 0.00 0.00 1.78
2541 2582 8.106247 AGATAACTTTATTCTGGCGTTTTCAA 57.894 30.769 0.00 0.00 0.00 2.69
2565 2606 9.739276 TTGATAGGCCAAGGTAATATCATTTAG 57.261 33.333 5.01 0.00 33.98 1.85
2592 2633 2.699954 AGTACTCGGGCTGTTGAATTG 58.300 47.619 0.00 0.00 0.00 2.32
2593 2634 3.514309 AGTAGTACTCGGGCTGTTGAATT 59.486 43.478 0.00 0.00 0.00 2.17
2594 2635 3.097614 AGTAGTACTCGGGCTGTTGAAT 58.902 45.455 0.00 0.00 0.00 2.57
2595 2636 2.230508 CAGTAGTACTCGGGCTGTTGAA 59.769 50.000 0.00 0.00 0.00 2.69
2596 2637 1.816835 CAGTAGTACTCGGGCTGTTGA 59.183 52.381 0.00 0.00 0.00 3.18
2597 2638 1.544691 ACAGTAGTACTCGGGCTGTTG 59.455 52.381 0.00 0.00 37.12 3.33
2598 2639 1.920610 ACAGTAGTACTCGGGCTGTT 58.079 50.000 0.00 0.00 37.12 3.16
2599 2640 2.795231 TACAGTAGTACTCGGGCTGT 57.205 50.000 19.17 19.17 42.25 4.40
2622 2663 3.928375 GGAGCAACCATTTTTACATGCTG 59.072 43.478 2.43 0.00 43.59 4.41
2640 2681 4.193865 CCCATCCAAAAATGAAATGGAGC 58.806 43.478 1.32 0.00 45.82 4.70
2730 2777 8.347035 GCACTAATTTTGTTCTTACACTAACCA 58.653 33.333 0.00 0.00 32.98 3.67
2735 2782 7.801716 TGAGCACTAATTTTGTTCTTACACT 57.198 32.000 5.56 0.00 32.98 3.55
2737 2784 8.845227 TCAATGAGCACTAATTTTGTTCTTACA 58.155 29.630 5.56 0.00 0.00 2.41
2742 2799 7.928908 TTGTCAATGAGCACTAATTTTGTTC 57.071 32.000 0.00 0.00 0.00 3.18
2774 2831 5.221601 ACCAATCTTCATGATAGAGACGCAT 60.222 40.000 0.00 0.00 34.45 4.73
2775 2832 4.100035 ACCAATCTTCATGATAGAGACGCA 59.900 41.667 0.00 0.00 34.45 5.24
2776 2833 4.626042 ACCAATCTTCATGATAGAGACGC 58.374 43.478 0.00 0.00 34.45 5.19
2778 2835 8.637986 ACTCTAACCAATCTTCATGATAGAGAC 58.362 37.037 23.16 0.00 37.46 3.36
2817 2874 8.870116 TCTGCTGCCTAGAATAAAAGATGTATA 58.130 33.333 0.00 0.00 0.00 1.47
2821 2878 6.286758 TCTCTGCTGCCTAGAATAAAAGATG 58.713 40.000 0.00 0.00 0.00 2.90
2850 2908 1.398958 GCTCTCCAGGGCTCTGTAGG 61.399 65.000 13.79 1.54 39.31 3.18
2938 2996 3.316308 AGAGACGCAGAAAGCATTGTTTT 59.684 39.130 0.00 0.00 46.13 2.43
2952 3010 5.304357 TCCCAATAAGAATATGAGAGACGCA 59.696 40.000 0.00 0.00 0.00 5.24
3073 3131 3.187022 GCTTGCCCAACATTTTGATTGAC 59.813 43.478 0.00 0.00 34.24 3.18
3130 3188 7.881516 AAAGACACGTATTTGTAAACGAAAC 57.118 32.000 1.45 0.00 41.55 2.78
3135 3193 8.831000 AACAGAAAAGACACGTATTTGTAAAC 57.169 30.769 0.00 0.00 0.00 2.01
3148 3206 6.790232 ATTCCCTTTTGAACAGAAAAGACA 57.210 33.333 7.21 0.00 43.02 3.41
3230 3288 2.774234 CCTGGCAGGAAGAGGAGATAAA 59.226 50.000 29.96 0.00 37.67 1.40
3437 3496 9.613428 ACGTGCAATATATAAATATGCCAGTAT 57.387 29.630 4.33 0.00 0.00 2.12
3459 3518 8.673626 AAAATTTTCTATCTGCATAACACGTG 57.326 30.769 15.48 15.48 0.00 4.49
3547 3606 0.963962 CACCCATTATGCTGATGCCC 59.036 55.000 0.00 0.00 38.71 5.36
3671 3730 7.809806 AGCTTAGAAAATTTCAATTCTTCACCG 59.190 33.333 8.55 0.00 37.16 4.94
3745 3804 3.075884 GGGAACGCCACTAACAAATGTA 58.924 45.455 0.00 0.00 35.15 2.29
3760 3819 0.394216 TGAATGCATCAGGGGGAACG 60.394 55.000 0.00 0.00 33.04 3.95
3794 3853 5.163364 ACTGAAGCATCTACCTGTTCCATAG 60.163 44.000 0.00 0.00 0.00 2.23
3849 3908 2.235891 GGTTACTGGAAACCCAACAGG 58.764 52.381 3.51 0.00 42.68 4.00
3856 3915 4.267536 GGAATGTAGGGTTACTGGAAACC 58.732 47.826 0.00 0.00 46.57 3.27
3890 3949 5.949952 AGGAAGTAGTGTGTTCAACCTTTTT 59.050 36.000 0.00 0.00 0.00 1.94
3908 3967 3.243535 GCTGCAAGTTTAGCAAAGGAAGT 60.244 43.478 0.00 0.00 42.17 3.01
3909 3968 3.311966 GCTGCAAGTTTAGCAAAGGAAG 58.688 45.455 0.00 0.00 42.17 3.46
4038 4106 1.071299 CCAAAAACCAGCAAGCCCC 59.929 57.895 0.00 0.00 0.00 5.80
4172 4323 2.525750 ACATTGTGCAAGCGTAATCG 57.474 45.000 0.00 0.00 40.37 3.34
4178 4329 2.009051 TGATCCTACATTGTGCAAGCG 58.991 47.619 0.00 0.00 0.00 4.68
4234 4385 5.107065 GGAAACAGTACCATTCAAGAAGTCG 60.107 44.000 0.00 0.00 0.00 4.18
4241 4392 7.340743 TGAAGAAAAGGAAACAGTACCATTCAA 59.659 33.333 12.95 0.00 31.44 2.69
4248 4399 8.926715 ATTTTGTGAAGAAAAGGAAACAGTAC 57.073 30.769 0.00 0.00 0.00 2.73
4249 4400 8.966868 AGATTTTGTGAAGAAAAGGAAACAGTA 58.033 29.630 0.00 0.00 0.00 2.74
4256 4407 7.439056 GCATCAAAGATTTTGTGAAGAAAAGGA 59.561 33.333 1.92 0.00 0.00 3.36
4279 4430 4.434545 AAACAGGAGATAGCATCAGCAT 57.565 40.909 0.00 0.00 45.49 3.79
4288 4439 5.006386 ACTGCCAAAGAAAACAGGAGATAG 58.994 41.667 0.00 0.00 34.40 2.08
4379 4530 4.081087 GCTCCAGTATTTACCAGGTCTTCA 60.081 45.833 0.00 0.00 0.00 3.02
4394 4545 6.546034 AGCAGTTAAAAGAAAAAGCTCCAGTA 59.454 34.615 0.00 0.00 0.00 2.74
4403 4554 9.915629 TTACACTTTCAGCAGTTAAAAGAAAAA 57.084 25.926 0.00 0.00 34.76 1.94
4449 4600 4.583871 AGTTTGCACAAATCCACCAAAAA 58.416 34.783 0.00 0.00 32.36 1.94
4450 4601 4.213564 AGTTTGCACAAATCCACCAAAA 57.786 36.364 0.00 0.00 32.36 2.44
4515 4669 8.739039 CAGATCCAATTTTAATACTCCACAACA 58.261 33.333 0.00 0.00 0.00 3.33
4517 4671 9.177608 CTCAGATCCAATTTTAATACTCCACAA 57.822 33.333 0.00 0.00 0.00 3.33
4532 4686 1.556911 ACAACCGCTCTCAGATCCAAT 59.443 47.619 0.00 0.00 0.00 3.16
4540 4694 4.304110 CAACTAAACTACAACCGCTCTCA 58.696 43.478 0.00 0.00 0.00 3.27
4548 4702 3.609409 GCTGGCTGCAACTAAACTACAAC 60.609 47.826 11.80 0.00 42.31 3.32
4549 4703 2.552315 GCTGGCTGCAACTAAACTACAA 59.448 45.455 11.80 0.00 42.31 2.41
4552 4706 2.038426 TCAGCTGGCTGCAACTAAACTA 59.962 45.455 18.84 0.00 45.94 2.24
4556 4710 2.086869 GAATCAGCTGGCTGCAACTAA 58.913 47.619 18.84 0.19 45.94 2.24
4707 4872 1.968540 GGCCAGCTGACCAGACAAC 60.969 63.158 17.39 0.00 0.00 3.32
4708 4873 2.431683 GGCCAGCTGACCAGACAA 59.568 61.111 17.39 0.00 0.00 3.18
4749 4914 8.420222 TGAAAAGAGAACCATAAGCATGAAAAA 58.580 29.630 0.00 0.00 33.67 1.94
4750 4915 7.950512 TGAAAAGAGAACCATAAGCATGAAAA 58.049 30.769 0.00 0.00 33.67 2.29
4805 4970 6.202954 ACTTCCTTAACTCAACAACATCTTCG 59.797 38.462 0.00 0.00 0.00 3.79
4844 5009 1.366319 ACTGAAGAACTGCCATCCCT 58.634 50.000 0.00 0.00 0.00 4.20
4879 5044 1.672881 GGAAGCATGGTCATAGTGCAC 59.327 52.381 9.40 9.40 41.19 4.57
4884 5049 7.605691 CCTTATAGAAAGGAAGCATGGTCATAG 59.394 40.741 0.00 0.00 39.81 2.23
4898 5063 7.158021 CAGAGCCATAGTTCCTTATAGAAAGG 58.842 42.308 0.00 0.00 38.78 3.11
4966 5131 7.944729 AAAGCTGTCCAGTATACAAATTGAT 57.055 32.000 5.50 0.00 0.00 2.57
4969 5134 6.572314 GCCAAAAGCTGTCCAGTATACAAATT 60.572 38.462 5.50 0.00 38.99 1.82
5039 5204 4.000988 GTGTCCCAGTGTATACAACTTGG 58.999 47.826 18.64 18.64 34.91 3.61
5096 5262 8.981647 CCAAAAGATGTGAATAAAGGAGTTTTG 58.018 33.333 0.00 0.00 33.16 2.44
5218 5385 4.974645 TTGCTTCTCTTCCTCTGGTAAA 57.025 40.909 0.00 0.00 0.00 2.01
5278 5445 5.367060 GGGAGTAAGATTAGGAAGACATGGT 59.633 44.000 0.00 0.00 0.00 3.55
5348 5515 0.975556 TAGCGCCCAAGAGACATCCA 60.976 55.000 2.29 0.00 0.00 3.41
5379 5546 1.000955 GTCCTTGCAACGGAAGAGAGA 59.999 52.381 16.19 0.00 31.13 3.10
5511 5678 7.821846 AGGCTACTGATTATTTATTCTAGCTGC 59.178 37.037 0.00 0.00 0.00 5.25
5681 5851 1.079750 GGAGTGCTGGAGAACCGAC 60.080 63.158 0.00 0.00 39.42 4.79
5917 6111 5.527582 ACAATAGCATAGACGAAATGGGAAC 59.472 40.000 0.00 0.00 0.00 3.62
6009 6206 6.831976 AGTAAACCTCAACACAGAGATTTCT 58.168 36.000 0.00 0.00 33.47 2.52
6010 6207 7.497925 AAGTAAACCTCAACACAGAGATTTC 57.502 36.000 0.00 0.00 33.47 2.17
6165 6362 5.126067 AGCAAGCATACTGTATAACCAAGG 58.874 41.667 0.00 0.00 0.00 3.61
6223 6420 3.508793 TGCTGGAGTTACTACCACAGTAC 59.491 47.826 0.00 0.00 39.52 2.73
6224 6421 3.770046 TGCTGGAGTTACTACCACAGTA 58.230 45.455 0.00 0.00 38.80 2.74
6225 6422 2.605257 TGCTGGAGTTACTACCACAGT 58.395 47.619 0.00 0.00 41.62 3.55
6226 6423 3.895232 ATGCTGGAGTTACTACCACAG 57.105 47.619 0.00 0.00 33.83 3.66
6227 6424 3.368013 CGAATGCTGGAGTTACTACCACA 60.368 47.826 0.00 0.00 32.44 4.17
6228 6425 3.119245 TCGAATGCTGGAGTTACTACCAC 60.119 47.826 0.00 0.00 32.44 4.16
6229 6426 3.093814 TCGAATGCTGGAGTTACTACCA 58.906 45.455 0.00 0.00 34.81 3.25
6230 6427 3.795623 TCGAATGCTGGAGTTACTACC 57.204 47.619 0.00 0.00 0.00 3.18
6231 6428 4.508124 CCATTCGAATGCTGGAGTTACTAC 59.492 45.833 28.90 0.00 35.08 2.73
6261 6459 7.229306 TGCATCTCTTGTGTTATGTCTTTTTCT 59.771 33.333 0.00 0.00 0.00 2.52
6273 6471 2.300433 TGTGCTTGCATCTCTTGTGTT 58.700 42.857 0.00 0.00 0.00 3.32
6275 6473 3.305964 CTTTGTGCTTGCATCTCTTGTG 58.694 45.455 0.00 0.00 0.00 3.33
6276 6474 2.288030 GCTTTGTGCTTGCATCTCTTGT 60.288 45.455 0.00 0.00 38.95 3.16
6277 6475 2.287970 TGCTTTGTGCTTGCATCTCTTG 60.288 45.455 0.00 0.00 43.37 3.02
6278 6476 1.958579 TGCTTTGTGCTTGCATCTCTT 59.041 42.857 0.00 0.00 43.37 2.85
6280 6478 1.538512 TCTGCTTTGTGCTTGCATCTC 59.461 47.619 0.00 0.00 43.37 2.75
6328 6530 4.202577 ACAAAAAGGTCCCTTTCCTCCTAG 60.203 45.833 11.57 1.16 44.50 3.02
6329 6531 3.725267 ACAAAAAGGTCCCTTTCCTCCTA 59.275 43.478 11.57 0.00 44.50 2.94
6355 6557 9.565213 CATGACTCATTTCATTACTCCTTTTTC 57.435 33.333 0.00 0.00 33.74 2.29
6356 6558 9.300681 TCATGACTCATTTCATTACTCCTTTTT 57.699 29.630 0.00 0.00 33.74 1.94
6357 6559 8.868522 TCATGACTCATTTCATTACTCCTTTT 57.131 30.769 0.00 0.00 33.74 2.27
6376 6578 1.134220 TGCCCGGTATTTCCTCATGAC 60.134 52.381 0.00 0.00 0.00 3.06
6377 6579 1.208706 TGCCCGGTATTTCCTCATGA 58.791 50.000 0.00 0.00 0.00 3.07
6398 6600 5.104900 CCCTGGTCCCTAGTATATTGCATAC 60.105 48.000 0.00 0.00 0.00 2.39
6417 6629 1.305219 TTCGAGATTTTGCGCCCTGG 61.305 55.000 4.18 0.00 0.00 4.45
6421 6633 1.791914 GCTCTTTCGAGATTTTGCGCC 60.792 52.381 4.18 0.00 39.74 6.53
6430 6642 0.894184 AGGACGGTGCTCTTTCGAGA 60.894 55.000 0.00 0.00 39.74 4.04
6450 6662 2.665603 GAGGTCCTCCACACCTGC 59.334 66.667 7.78 0.00 44.87 4.85
6454 6666 1.542492 TCTAACGAGGTCCTCCACAC 58.458 55.000 13.54 0.00 35.89 3.82
6455 6667 2.168496 CTTCTAACGAGGTCCTCCACA 58.832 52.381 13.54 0.00 35.89 4.17
6456 6668 1.477295 CCTTCTAACGAGGTCCTCCAC 59.523 57.143 13.54 0.00 35.89 4.02
6480 6692 2.621672 TAGATCCCTCCACTGCCCCC 62.622 65.000 0.00 0.00 0.00 5.40
6483 6695 1.751563 GCTAGATCCCTCCACTGCC 59.248 63.158 0.00 0.00 0.00 4.85
6488 6700 1.497716 TCTTACGGCTAGATCCCTCCA 59.502 52.381 0.00 0.00 0.00 3.86
6513 6725 4.321230 CCTTTTGTGTCCTGTAATTGCTCC 60.321 45.833 0.00 0.00 0.00 4.70
6514 6726 4.518970 TCCTTTTGTGTCCTGTAATTGCTC 59.481 41.667 0.00 0.00 0.00 4.26
6520 6732 3.634910 GGCTTTCCTTTTGTGTCCTGTAA 59.365 43.478 0.00 0.00 0.00 2.41
6521 6733 3.219281 GGCTTTCCTTTTGTGTCCTGTA 58.781 45.455 0.00 0.00 0.00 2.74
6523 6735 1.001378 CGGCTTTCCTTTTGTGTCCTG 60.001 52.381 0.00 0.00 0.00 3.86
6552 6764 3.366052 AGGTACCTGGTATTTTGCAGG 57.634 47.619 15.42 0.00 40.48 4.85
6556 6768 4.081531 TCCACGTAGGTACCTGGTATTTTG 60.082 45.833 25.33 10.81 39.02 2.44
6635 6848 3.205784 ACAGAGAAGATTAGCATGGCC 57.794 47.619 0.00 0.00 0.00 5.36
6636 6849 4.624882 CGATACAGAGAAGATTAGCATGGC 59.375 45.833 0.00 0.00 0.00 4.40
6637 6850 5.777802 ACGATACAGAGAAGATTAGCATGG 58.222 41.667 0.00 0.00 0.00 3.66
6638 6851 6.364706 GGAACGATACAGAGAAGATTAGCATG 59.635 42.308 0.00 0.00 0.00 4.06
6639 6852 6.040955 TGGAACGATACAGAGAAGATTAGCAT 59.959 38.462 0.00 0.00 0.00 3.79
6640 6853 5.359860 TGGAACGATACAGAGAAGATTAGCA 59.640 40.000 0.00 0.00 0.00 3.49
6641 6854 5.833082 TGGAACGATACAGAGAAGATTAGC 58.167 41.667 0.00 0.00 0.00 3.09
6642 6855 8.879342 AATTGGAACGATACAGAGAAGATTAG 57.121 34.615 0.00 0.00 0.00 1.73
6643 6856 9.667107 AAAATTGGAACGATACAGAGAAGATTA 57.333 29.630 0.00 0.00 0.00 1.75
6644 6857 8.567285 AAAATTGGAACGATACAGAGAAGATT 57.433 30.769 0.00 0.00 0.00 2.40
6645 6858 9.838339 ATAAAATTGGAACGATACAGAGAAGAT 57.162 29.630 0.00 0.00 0.00 2.40
6646 6859 9.314321 GATAAAATTGGAACGATACAGAGAAGA 57.686 33.333 0.00 0.00 0.00 2.87
6647 6860 8.269424 CGATAAAATTGGAACGATACAGAGAAG 58.731 37.037 0.00 0.00 0.00 2.85
6648 6861 7.223971 CCGATAAAATTGGAACGATACAGAGAA 59.776 37.037 0.00 0.00 35.72 2.87
6649 6862 6.700081 CCGATAAAATTGGAACGATACAGAGA 59.300 38.462 0.00 0.00 35.72 3.10
6650 6863 6.700081 TCCGATAAAATTGGAACGATACAGAG 59.300 38.462 0.00 0.00 39.91 3.35
6651 6864 6.575267 TCCGATAAAATTGGAACGATACAGA 58.425 36.000 0.00 0.00 39.91 3.41
6652 6865 6.838198 TCCGATAAAATTGGAACGATACAG 57.162 37.500 0.00 0.00 39.91 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.