Multiple sequence alignment - TraesCS2D01G164900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G164900 chr2D 100.000 3118 0 0 1 3118 109128693 109131810 0.000000e+00 5758.0
1 TraesCS2D01G164900 chr2D 92.271 2122 155 9 998 3118 109031209 109033322 0.000000e+00 3001.0
2 TraesCS2D01G164900 chr2D 90.270 1223 109 10 994 2210 109554725 109555943 0.000000e+00 1591.0
3 TraesCS2D01G164900 chr2D 78.822 798 167 2 1125 1921 28965635 28966431 1.270000e-148 536.0
4 TraesCS2D01G164900 chr2D 73.987 765 175 23 2354 3107 506088812 506089563 3.930000e-74 289.0
5 TraesCS2D01G164900 chr2D 81.757 296 22 16 34 319 109554132 109553859 5.240000e-53 219.0
6 TraesCS2D01G164900 chr2D 87.786 131 9 2 2233 2356 109577446 109577576 2.510000e-31 147.0
7 TraesCS2D01G164900 chr2D 88.506 87 10 0 909 995 498531669 498531755 4.250000e-19 106.0
8 TraesCS2D01G164900 chr2B 89.197 1370 116 13 1004 2356 159098897 159100251 0.000000e+00 1681.0
9 TraesCS2D01G164900 chr2B 93.659 552 34 1 1529 2080 158869145 158869695 0.000000e+00 824.0
10 TraesCS2D01G164900 chr2B 93.657 536 33 1 998 1533 158864070 158864604 0.000000e+00 800.0
11 TraesCS2D01G164900 chr2B 93.709 302 9 8 34 332 158863502 158863208 7.930000e-121 444.0
12 TraesCS2D01G164900 chr2B 86.557 305 12 9 1 301 159098379 159098100 3.020000e-80 309.0
13 TraesCS2D01G164900 chr2B 100.000 32 0 0 1 32 158863557 158863526 3.360000e-05 60.2
14 TraesCS2D01G164900 chr2A 91.101 1090 82 4 998 2081 105407878 105408958 0.000000e+00 1461.0
15 TraesCS2D01G164900 chr2A 86.550 684 91 1 2436 3118 769472079 769471396 0.000000e+00 752.0
16 TraesCS2D01G164900 chr2A 79.000 800 166 2 1125 1923 30865296 30866094 2.110000e-151 545.0
17 TraesCS2D01G164900 chr7D 92.826 683 39 8 333 1006 529432467 529431786 0.000000e+00 981.0
18 TraesCS2D01G164900 chr7D 77.285 766 155 15 1125 1882 48356459 48357213 1.720000e-117 433.0
19 TraesCS2D01G164900 chr5B 91.716 676 44 7 332 1000 166586182 166585512 0.000000e+00 928.0
20 TraesCS2D01G164900 chr5B 90.103 677 43 10 332 1001 166590937 166590278 0.000000e+00 857.0
21 TraesCS2D01G164900 chr3A 84.915 769 113 3 2352 3118 705581792 705581025 0.000000e+00 774.0
22 TraesCS2D01G164900 chr3A 78.325 406 75 12 2718 3116 163189561 163189162 1.860000e-62 250.0
23 TraesCS2D01G164900 chr3A 81.633 245 44 1 998 1242 31962436 31962193 5.270000e-48 202.0
24 TraesCS2D01G164900 chr3A 84.946 93 14 0 909 1001 701141356 701141264 9.210000e-16 95.3
25 TraesCS2D01G164900 chr3A 84.091 88 14 0 909 996 696202506 696202419 5.540000e-13 86.1
26 TraesCS2D01G164900 chr7A 84.383 762 114 4 2358 3118 243485173 243484416 0.000000e+00 743.0
27 TraesCS2D01G164900 chr7B 83.963 767 119 4 2354 3118 587957126 587956362 0.000000e+00 732.0
28 TraesCS2D01G164900 chr3B 80.676 947 162 9 998 1943 39452328 39453254 0.000000e+00 715.0
29 TraesCS2D01G164900 chr3B 88.889 423 47 0 2696 3118 63456486 63456064 3.560000e-144 521.0
30 TraesCS2D01G164900 chr6A 83.175 737 120 4 2383 3118 59791451 59790718 0.000000e+00 671.0
31 TraesCS2D01G164900 chr3D 87.972 424 50 1 2406 2828 3400147 3399724 1.670000e-137 499.0
32 TraesCS2D01G164900 chr3D 73.810 420 83 24 2358 2763 610599612 610600018 1.170000e-29 141.0
33 TraesCS2D01G164900 chrUn 78.117 393 82 3 1506 1896 17076110 17075720 2.400000e-61 246.0
34 TraesCS2D01G164900 chr5D 87.368 95 10 2 909 1002 482763259 482763352 1.180000e-19 108.0
35 TraesCS2D01G164900 chr5D 82.883 111 14 5 2355 2462 458770905 458771013 9.210000e-16 95.3
36 TraesCS2D01G164900 chr4D 87.234 94 12 0 909 1002 366976993 366977086 1.180000e-19 108.0
37 TraesCS2D01G164900 chr4D 77.895 95 19 2 909 1002 486920941 486921034 1.210000e-04 58.4
38 TraesCS2D01G164900 chr4A 82.569 109 17 2 2355 2462 58916414 58916307 9.210000e-16 95.3
39 TraesCS2D01G164900 chr6D 95.000 40 2 0 2369 2408 24368776 24368737 2.600000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G164900 chr2D 109128693 109131810 3117 False 5758 5758 100.000 1 3118 1 chr2D.!!$F3 3117
1 TraesCS2D01G164900 chr2D 109031209 109033322 2113 False 3001 3001 92.271 998 3118 1 chr2D.!!$F2 2120
2 TraesCS2D01G164900 chr2D 109554725 109555943 1218 False 1591 1591 90.270 994 2210 1 chr2D.!!$F4 1216
3 TraesCS2D01G164900 chr2D 28965635 28966431 796 False 536 536 78.822 1125 1921 1 chr2D.!!$F1 796
4 TraesCS2D01G164900 chr2D 506088812 506089563 751 False 289 289 73.987 2354 3107 1 chr2D.!!$F7 753
5 TraesCS2D01G164900 chr2B 159098897 159100251 1354 False 1681 1681 89.197 1004 2356 1 chr2B.!!$F3 1352
6 TraesCS2D01G164900 chr2B 158869145 158869695 550 False 824 824 93.659 1529 2080 1 chr2B.!!$F2 551
7 TraesCS2D01G164900 chr2B 158864070 158864604 534 False 800 800 93.657 998 1533 1 chr2B.!!$F1 535
8 TraesCS2D01G164900 chr2A 105407878 105408958 1080 False 1461 1461 91.101 998 2081 1 chr2A.!!$F2 1083
9 TraesCS2D01G164900 chr2A 769471396 769472079 683 True 752 752 86.550 2436 3118 1 chr2A.!!$R1 682
10 TraesCS2D01G164900 chr2A 30865296 30866094 798 False 545 545 79.000 1125 1923 1 chr2A.!!$F1 798
11 TraesCS2D01G164900 chr7D 529431786 529432467 681 True 981 981 92.826 333 1006 1 chr7D.!!$R1 673
12 TraesCS2D01G164900 chr7D 48356459 48357213 754 False 433 433 77.285 1125 1882 1 chr7D.!!$F1 757
13 TraesCS2D01G164900 chr5B 166585512 166586182 670 True 928 928 91.716 332 1000 1 chr5B.!!$R1 668
14 TraesCS2D01G164900 chr5B 166590278 166590937 659 True 857 857 90.103 332 1001 1 chr5B.!!$R2 669
15 TraesCS2D01G164900 chr3A 705581025 705581792 767 True 774 774 84.915 2352 3118 1 chr3A.!!$R5 766
16 TraesCS2D01G164900 chr7A 243484416 243485173 757 True 743 743 84.383 2358 3118 1 chr7A.!!$R1 760
17 TraesCS2D01G164900 chr7B 587956362 587957126 764 True 732 732 83.963 2354 3118 1 chr7B.!!$R1 764
18 TraesCS2D01G164900 chr3B 39452328 39453254 926 False 715 715 80.676 998 1943 1 chr3B.!!$F1 945
19 TraesCS2D01G164900 chr6A 59790718 59791451 733 True 671 671 83.175 2383 3118 1 chr6A.!!$R1 735

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
61 62 0.030773 GTGTGTGAGTGAGACAGCGA 59.969 55.0 0.00 0.0 0.0 4.93 F
222 223 0.036388 GAACTCCAATCTGCCACCGA 60.036 55.0 0.00 0.0 0.0 4.69 F
1504 1520 0.108585 GCCTGAGCCGGATTTGGATA 59.891 55.0 5.05 0.0 0.0 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1754 1770 0.173708 CTCTACCACCTCCTTGTCGC 59.826 60.0 0.00 0.0 0.00 5.19 R
2104 2133 0.166161 GCCTCCGCGAAAAAGAAGTC 59.834 55.0 8.23 0.0 0.00 3.01 R
2462 2511 0.179076 TACGAGGACACGCCGATCTA 60.179 55.0 0.00 0.0 43.43 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.919666 GATCGGTGGTGTGGATTTTG 57.080 50.000 0.00 0.00 0.00 2.44
20 21 1.472480 GATCGGTGGTGTGGATTTTGG 59.528 52.381 0.00 0.00 0.00 3.28
21 22 0.474614 TCGGTGGTGTGGATTTTGGA 59.525 50.000 0.00 0.00 0.00 3.53
22 23 0.596082 CGGTGGTGTGGATTTTGGAC 59.404 55.000 0.00 0.00 0.00 4.02
23 24 0.596082 GGTGGTGTGGATTTTGGACG 59.404 55.000 0.00 0.00 0.00 4.79
24 25 1.314730 GTGGTGTGGATTTTGGACGT 58.685 50.000 0.00 0.00 0.00 4.34
25 26 1.679153 GTGGTGTGGATTTTGGACGTT 59.321 47.619 0.00 0.00 0.00 3.99
26 27 2.100087 GTGGTGTGGATTTTGGACGTTT 59.900 45.455 0.00 0.00 0.00 3.60
27 28 2.099921 TGGTGTGGATTTTGGACGTTTG 59.900 45.455 0.00 0.00 0.00 2.93
28 29 2.544903 GGTGTGGATTTTGGACGTTTGG 60.545 50.000 0.00 0.00 0.00 3.28
29 30 2.359531 GTGTGGATTTTGGACGTTTGGA 59.640 45.455 0.00 0.00 0.00 3.53
30 31 3.024547 TGTGGATTTTGGACGTTTGGAA 58.975 40.909 0.00 0.00 0.00 3.53
31 32 3.639094 TGTGGATTTTGGACGTTTGGAAT 59.361 39.130 0.00 0.00 0.00 3.01
32 33 4.827835 TGTGGATTTTGGACGTTTGGAATA 59.172 37.500 0.00 0.00 0.00 1.75
33 34 5.478679 TGTGGATTTTGGACGTTTGGAATAT 59.521 36.000 0.00 0.00 0.00 1.28
34 35 5.804979 GTGGATTTTGGACGTTTGGAATATG 59.195 40.000 0.00 0.00 0.00 1.78
35 36 5.478679 TGGATTTTGGACGTTTGGAATATGT 59.521 36.000 0.00 0.00 0.00 2.29
36 37 5.804979 GGATTTTGGACGTTTGGAATATGTG 59.195 40.000 0.00 0.00 0.00 3.21
37 38 5.776173 TTTTGGACGTTTGGAATATGTGT 57.224 34.783 0.00 0.00 0.00 3.72
38 39 4.757799 TTGGACGTTTGGAATATGTGTG 57.242 40.909 0.00 0.00 0.00 3.82
39 40 3.745799 TGGACGTTTGGAATATGTGTGT 58.254 40.909 0.00 0.00 0.00 3.72
40 41 3.500299 TGGACGTTTGGAATATGTGTGTG 59.500 43.478 0.00 0.00 0.00 3.82
41 42 3.500680 GGACGTTTGGAATATGTGTGTGT 59.499 43.478 0.00 0.00 0.00 3.72
42 43 4.463209 GACGTTTGGAATATGTGTGTGTG 58.537 43.478 0.00 0.00 0.00 3.82
43 44 3.880490 ACGTTTGGAATATGTGTGTGTGT 59.120 39.130 0.00 0.00 0.00 3.72
44 45 4.218265 CGTTTGGAATATGTGTGTGTGTG 58.782 43.478 0.00 0.00 0.00 3.82
45 46 4.260990 CGTTTGGAATATGTGTGTGTGTGT 60.261 41.667 0.00 0.00 0.00 3.72
46 47 4.827304 TTGGAATATGTGTGTGTGTGTG 57.173 40.909 0.00 0.00 0.00 3.82
47 48 3.814625 TGGAATATGTGTGTGTGTGTGT 58.185 40.909 0.00 0.00 0.00 3.72
48 49 3.563390 TGGAATATGTGTGTGTGTGTGTG 59.437 43.478 0.00 0.00 0.00 3.82
49 50 3.812609 GGAATATGTGTGTGTGTGTGTGA 59.187 43.478 0.00 0.00 0.00 3.58
50 51 4.083855 GGAATATGTGTGTGTGTGTGTGAG 60.084 45.833 0.00 0.00 0.00 3.51
51 52 2.401583 ATGTGTGTGTGTGTGTGAGT 57.598 45.000 0.00 0.00 0.00 3.41
52 53 1.437625 TGTGTGTGTGTGTGTGAGTG 58.562 50.000 0.00 0.00 0.00 3.51
53 54 1.001406 TGTGTGTGTGTGTGTGAGTGA 59.999 47.619 0.00 0.00 0.00 3.41
54 55 1.660607 GTGTGTGTGTGTGTGAGTGAG 59.339 52.381 0.00 0.00 0.00 3.51
55 56 1.548269 TGTGTGTGTGTGTGAGTGAGA 59.452 47.619 0.00 0.00 0.00 3.27
56 57 1.927174 GTGTGTGTGTGTGAGTGAGAC 59.073 52.381 0.00 0.00 0.00 3.36
57 58 1.548269 TGTGTGTGTGTGAGTGAGACA 59.452 47.619 0.00 0.00 0.00 3.41
58 59 2.196749 GTGTGTGTGTGAGTGAGACAG 58.803 52.381 0.00 0.00 0.00 3.51
59 60 1.212616 GTGTGTGTGAGTGAGACAGC 58.787 55.000 0.00 0.00 0.00 4.40
60 61 0.249031 TGTGTGTGAGTGAGACAGCG 60.249 55.000 0.00 0.00 0.00 5.18
61 62 0.030773 GTGTGTGAGTGAGACAGCGA 59.969 55.000 0.00 0.00 0.00 4.93
62 63 0.312102 TGTGTGAGTGAGACAGCGAG 59.688 55.000 0.00 0.00 0.00 5.03
63 64 0.387878 GTGTGAGTGAGACAGCGAGG 60.388 60.000 0.00 0.00 0.00 4.63
64 65 0.537371 TGTGAGTGAGACAGCGAGGA 60.537 55.000 0.00 0.00 0.00 3.71
65 66 0.598562 GTGAGTGAGACAGCGAGGAA 59.401 55.000 0.00 0.00 0.00 3.36
66 67 0.884514 TGAGTGAGACAGCGAGGAAG 59.115 55.000 0.00 0.00 0.00 3.46
67 68 1.169577 GAGTGAGACAGCGAGGAAGA 58.830 55.000 0.00 0.00 0.00 2.87
68 69 1.132262 GAGTGAGACAGCGAGGAAGAG 59.868 57.143 0.00 0.00 0.00 2.85
69 70 1.169577 GTGAGACAGCGAGGAAGAGA 58.830 55.000 0.00 0.00 0.00 3.10
70 71 1.132262 GTGAGACAGCGAGGAAGAGAG 59.868 57.143 0.00 0.00 0.00 3.20
71 72 1.003696 TGAGACAGCGAGGAAGAGAGA 59.996 52.381 0.00 0.00 0.00 3.10
72 73 1.670811 GAGACAGCGAGGAAGAGAGAG 59.329 57.143 0.00 0.00 0.00 3.20
73 74 1.280710 AGACAGCGAGGAAGAGAGAGA 59.719 52.381 0.00 0.00 0.00 3.10
74 75 1.670811 GACAGCGAGGAAGAGAGAGAG 59.329 57.143 0.00 0.00 0.00 3.20
75 76 1.280710 ACAGCGAGGAAGAGAGAGAGA 59.719 52.381 0.00 0.00 0.00 3.10
76 77 1.670811 CAGCGAGGAAGAGAGAGAGAC 59.329 57.143 0.00 0.00 0.00 3.36
77 78 1.021968 GCGAGGAAGAGAGAGAGACC 58.978 60.000 0.00 0.00 0.00 3.85
78 79 1.680555 GCGAGGAAGAGAGAGAGACCA 60.681 57.143 0.00 0.00 0.00 4.02
79 80 2.288666 CGAGGAAGAGAGAGAGACCAG 58.711 57.143 0.00 0.00 0.00 4.00
80 81 2.654863 GAGGAAGAGAGAGAGACCAGG 58.345 57.143 0.00 0.00 0.00 4.45
81 82 2.241176 GAGGAAGAGAGAGAGACCAGGA 59.759 54.545 0.00 0.00 0.00 3.86
82 83 2.858768 AGGAAGAGAGAGAGACCAGGAT 59.141 50.000 0.00 0.00 0.00 3.24
83 84 2.958355 GGAAGAGAGAGAGACCAGGATG 59.042 54.545 0.00 0.00 0.00 3.51
84 85 3.372566 GGAAGAGAGAGAGACCAGGATGA 60.373 52.174 0.00 0.00 39.69 2.92
85 86 4.473444 GAAGAGAGAGAGACCAGGATGAT 58.527 47.826 0.00 0.00 39.69 2.45
86 87 4.541250 AGAGAGAGAGACCAGGATGATT 57.459 45.455 0.00 0.00 39.69 2.57
87 88 4.882559 AGAGAGAGAGACCAGGATGATTT 58.117 43.478 0.00 0.00 39.69 2.17
88 89 4.650588 AGAGAGAGAGACCAGGATGATTTG 59.349 45.833 0.00 0.00 39.69 2.32
89 90 4.618635 AGAGAGAGACCAGGATGATTTGA 58.381 43.478 0.00 0.00 39.69 2.69
90 91 4.650588 AGAGAGAGACCAGGATGATTTGAG 59.349 45.833 0.00 0.00 39.69 3.02
91 92 4.618635 AGAGAGACCAGGATGATTTGAGA 58.381 43.478 0.00 0.00 39.69 3.27
92 93 5.218179 AGAGAGACCAGGATGATTTGAGAT 58.782 41.667 0.00 0.00 39.69 2.75
93 94 5.070714 AGAGAGACCAGGATGATTTGAGATG 59.929 44.000 0.00 0.00 39.69 2.90
94 95 4.102838 AGAGACCAGGATGATTTGAGATGG 59.897 45.833 0.00 0.00 39.69 3.51
95 96 4.042884 AGACCAGGATGATTTGAGATGGA 58.957 43.478 0.00 0.00 39.69 3.41
96 97 4.102838 AGACCAGGATGATTTGAGATGGAG 59.897 45.833 0.00 0.00 39.69 3.86
97 98 4.042884 ACCAGGATGATTTGAGATGGAGA 58.957 43.478 0.00 0.00 39.69 3.71
98 99 4.664064 ACCAGGATGATTTGAGATGGAGAT 59.336 41.667 0.00 0.00 39.69 2.75
99 100 5.004448 CCAGGATGATTTGAGATGGAGATG 58.996 45.833 0.00 0.00 39.69 2.90
100 101 5.221864 CCAGGATGATTTGAGATGGAGATGA 60.222 44.000 0.00 0.00 39.69 2.92
101 102 6.477253 CAGGATGATTTGAGATGGAGATGAT 58.523 40.000 0.00 0.00 39.69 2.45
102 103 6.372937 CAGGATGATTTGAGATGGAGATGATG 59.627 42.308 0.00 0.00 39.69 3.07
103 104 6.272558 AGGATGATTTGAGATGGAGATGATGA 59.727 38.462 0.00 0.00 0.00 2.92
104 105 6.940867 GGATGATTTGAGATGGAGATGATGAA 59.059 38.462 0.00 0.00 0.00 2.57
105 106 7.119992 GGATGATTTGAGATGGAGATGATGAAG 59.880 40.741 0.00 0.00 0.00 3.02
106 107 7.133133 TGATTTGAGATGGAGATGATGAAGA 57.867 36.000 0.00 0.00 0.00 2.87
107 108 7.571025 TGATTTGAGATGGAGATGATGAAGAA 58.429 34.615 0.00 0.00 0.00 2.52
108 109 7.715686 TGATTTGAGATGGAGATGATGAAGAAG 59.284 37.037 0.00 0.00 0.00 2.85
109 110 6.803366 TTGAGATGGAGATGATGAAGAAGA 57.197 37.500 0.00 0.00 0.00 2.87
110 111 6.803366 TGAGATGGAGATGATGAAGAAGAA 57.197 37.500 0.00 0.00 0.00 2.52
111 112 6.580788 TGAGATGGAGATGATGAAGAAGAAC 58.419 40.000 0.00 0.00 0.00 3.01
112 113 6.155737 TGAGATGGAGATGATGAAGAAGAACA 59.844 38.462 0.00 0.00 0.00 3.18
113 114 6.955364 AGATGGAGATGATGAAGAAGAACAA 58.045 36.000 0.00 0.00 0.00 2.83
114 115 7.049133 AGATGGAGATGATGAAGAAGAACAAG 58.951 38.462 0.00 0.00 0.00 3.16
115 116 6.364568 TGGAGATGATGAAGAAGAACAAGA 57.635 37.500 0.00 0.00 0.00 3.02
116 117 6.404708 TGGAGATGATGAAGAAGAACAAGAG 58.595 40.000 0.00 0.00 0.00 2.85
117 118 6.212187 TGGAGATGATGAAGAAGAACAAGAGA 59.788 38.462 0.00 0.00 0.00 3.10
118 119 6.757947 GGAGATGATGAAGAAGAACAAGAGAG 59.242 42.308 0.00 0.00 0.00 3.20
119 120 7.243604 AGATGATGAAGAAGAACAAGAGAGT 57.756 36.000 0.00 0.00 0.00 3.24
120 121 7.678837 AGATGATGAAGAAGAACAAGAGAGTT 58.321 34.615 0.00 0.00 0.00 3.01
121 122 8.156165 AGATGATGAAGAAGAACAAGAGAGTTT 58.844 33.333 0.00 0.00 0.00 2.66
122 123 8.688747 ATGATGAAGAAGAACAAGAGAGTTTT 57.311 30.769 0.00 0.00 0.00 2.43
123 124 9.784531 ATGATGAAGAAGAACAAGAGAGTTTTA 57.215 29.630 0.00 0.00 0.00 1.52
124 125 9.784531 TGATGAAGAAGAACAAGAGAGTTTTAT 57.215 29.630 0.00 0.00 0.00 1.40
127 128 9.712305 TGAAGAAGAACAAGAGAGTTTTATAGG 57.288 33.333 0.00 0.00 0.00 2.57
128 129 9.157104 GAAGAAGAACAAGAGAGTTTTATAGGG 57.843 37.037 0.00 0.00 0.00 3.53
129 130 7.625469 AGAAGAACAAGAGAGTTTTATAGGGG 58.375 38.462 0.00 0.00 0.00 4.79
130 131 5.746284 AGAACAAGAGAGTTTTATAGGGGC 58.254 41.667 0.00 0.00 0.00 5.80
131 132 4.138487 ACAAGAGAGTTTTATAGGGGCG 57.862 45.455 0.00 0.00 0.00 6.13
132 133 2.872858 CAAGAGAGTTTTATAGGGGCGC 59.127 50.000 0.00 0.00 0.00 6.53
133 134 2.116238 AGAGAGTTTTATAGGGGCGCA 58.884 47.619 10.83 0.00 0.00 6.09
134 135 2.504175 AGAGAGTTTTATAGGGGCGCAA 59.496 45.455 10.83 0.00 0.00 4.85
135 136 2.872858 GAGAGTTTTATAGGGGCGCAAG 59.127 50.000 10.83 0.00 43.44 4.01
136 137 1.947456 GAGTTTTATAGGGGCGCAAGG 59.053 52.381 10.83 0.00 38.28 3.61
149 150 3.964875 CAAGGCAACGCAACGGCT 61.965 61.111 0.00 0.00 46.39 5.52
150 151 3.964875 AAGGCAACGCAACGGCTG 61.965 61.111 0.00 0.00 46.39 4.85
151 152 4.927782 AGGCAACGCAACGGCTGA 62.928 61.111 0.00 0.00 46.39 4.26
152 153 3.737172 GGCAACGCAACGGCTGAT 61.737 61.111 0.00 0.00 38.10 2.90
153 154 2.502510 GCAACGCAACGGCTGATG 60.503 61.111 0.00 0.00 38.10 3.07
154 155 2.502510 CAACGCAACGGCTGATGC 60.503 61.111 17.27 17.27 40.23 3.91
155 156 2.669569 AACGCAACGGCTGATGCT 60.670 55.556 23.38 9.56 41.35 3.79
156 157 2.680913 AACGCAACGGCTGATGCTC 61.681 57.895 23.38 0.00 41.35 4.26
157 158 3.120385 CGCAACGGCTGATGCTCA 61.120 61.111 23.38 0.00 41.35 4.26
158 159 2.789917 GCAACGGCTGATGCTCAG 59.210 61.111 19.65 8.34 46.90 3.35
159 160 2.758089 GCAACGGCTGATGCTCAGG 61.758 63.158 19.65 2.96 44.43 3.86
160 161 1.376424 CAACGGCTGATGCTCAGGT 60.376 57.895 0.00 3.45 44.43 4.00
161 162 1.376424 AACGGCTGATGCTCAGGTG 60.376 57.895 0.00 0.00 44.43 4.00
162 163 2.513204 CGGCTGATGCTCAGGTGG 60.513 66.667 12.98 0.00 44.43 4.61
163 164 2.673523 GGCTGATGCTCAGGTGGT 59.326 61.111 12.98 0.00 44.43 4.16
164 165 1.748122 GGCTGATGCTCAGGTGGTG 60.748 63.158 12.98 0.00 44.43 4.17
165 166 1.297689 GCTGATGCTCAGGTGGTGA 59.702 57.895 12.98 0.00 44.43 4.02
166 167 0.107312 GCTGATGCTCAGGTGGTGAT 60.107 55.000 12.98 0.00 44.43 3.06
167 168 1.681166 GCTGATGCTCAGGTGGTGATT 60.681 52.381 12.98 0.00 44.43 2.57
168 169 2.014857 CTGATGCTCAGGTGGTGATTG 58.985 52.381 5.54 0.00 40.71 2.67
169 170 1.352017 TGATGCTCAGGTGGTGATTGT 59.648 47.619 0.00 0.00 33.51 2.71
170 171 1.741706 GATGCTCAGGTGGTGATTGTG 59.258 52.381 0.00 0.00 33.51 3.33
171 172 0.473755 TGCTCAGGTGGTGATTGTGT 59.526 50.000 0.00 0.00 33.51 3.72
172 173 1.133823 TGCTCAGGTGGTGATTGTGTT 60.134 47.619 0.00 0.00 33.51 3.32
173 174 1.956477 GCTCAGGTGGTGATTGTGTTT 59.044 47.619 0.00 0.00 33.51 2.83
174 175 2.287788 GCTCAGGTGGTGATTGTGTTTG 60.288 50.000 0.00 0.00 33.51 2.93
175 176 2.294233 CTCAGGTGGTGATTGTGTTTGG 59.706 50.000 0.00 0.00 33.51 3.28
176 177 2.092158 TCAGGTGGTGATTGTGTTTGGA 60.092 45.455 0.00 0.00 0.00 3.53
177 178 2.034558 CAGGTGGTGATTGTGTTTGGAC 59.965 50.000 0.00 0.00 0.00 4.02
178 179 2.091885 AGGTGGTGATTGTGTTTGGACT 60.092 45.455 0.00 0.00 0.00 3.85
179 180 2.693074 GGTGGTGATTGTGTTTGGACTT 59.307 45.455 0.00 0.00 0.00 3.01
180 181 3.490761 GGTGGTGATTGTGTTTGGACTTG 60.491 47.826 0.00 0.00 0.00 3.16
181 182 3.130340 GTGGTGATTGTGTTTGGACTTGT 59.870 43.478 0.00 0.00 0.00 3.16
182 183 3.130164 TGGTGATTGTGTTTGGACTTGTG 59.870 43.478 0.00 0.00 0.00 3.33
183 184 3.130340 GGTGATTGTGTTTGGACTTGTGT 59.870 43.478 0.00 0.00 0.00 3.72
184 185 4.351192 GTGATTGTGTTTGGACTTGTGTC 58.649 43.478 0.00 0.00 42.22 3.67
185 186 3.064682 TGATTGTGTTTGGACTTGTGTCG 59.935 43.478 0.00 0.00 43.79 4.35
186 187 2.388310 TGTGTTTGGACTTGTGTCGA 57.612 45.000 0.00 0.00 43.79 4.20
187 188 2.912771 TGTGTTTGGACTTGTGTCGAT 58.087 42.857 0.00 0.00 43.79 3.59
188 189 2.869801 TGTGTTTGGACTTGTGTCGATC 59.130 45.455 0.00 0.00 43.79 3.69
189 190 2.223377 GTGTTTGGACTTGTGTCGATCC 59.777 50.000 0.00 0.00 43.79 3.36
190 191 2.104111 TGTTTGGACTTGTGTCGATCCT 59.896 45.455 2.40 0.00 43.79 3.24
191 192 3.139077 GTTTGGACTTGTGTCGATCCTT 58.861 45.455 2.40 0.00 43.79 3.36
192 193 2.743636 TGGACTTGTGTCGATCCTTC 57.256 50.000 2.40 0.00 43.79 3.46
193 194 1.275291 TGGACTTGTGTCGATCCTTCC 59.725 52.381 2.40 0.00 43.79 3.46
194 195 1.405661 GGACTTGTGTCGATCCTTCCC 60.406 57.143 0.00 0.00 43.79 3.97
195 196 1.275291 GACTTGTGTCGATCCTTCCCA 59.725 52.381 0.00 0.00 33.15 4.37
196 197 1.909302 ACTTGTGTCGATCCTTCCCAT 59.091 47.619 0.00 0.00 0.00 4.00
197 198 2.283298 CTTGTGTCGATCCTTCCCATG 58.717 52.381 0.00 0.00 0.00 3.66
198 199 1.567357 TGTGTCGATCCTTCCCATGA 58.433 50.000 0.00 0.00 0.00 3.07
199 200 1.482182 TGTGTCGATCCTTCCCATGAG 59.518 52.381 0.00 0.00 0.00 2.90
200 201 1.757118 GTGTCGATCCTTCCCATGAGA 59.243 52.381 0.00 0.00 0.00 3.27
201 202 1.757118 TGTCGATCCTTCCCATGAGAC 59.243 52.381 0.00 0.00 0.00 3.36
202 203 2.035632 GTCGATCCTTCCCATGAGACT 58.964 52.381 0.00 0.00 0.00 3.24
203 204 2.034878 TCGATCCTTCCCATGAGACTG 58.965 52.381 0.00 0.00 0.00 3.51
204 205 2.034878 CGATCCTTCCCATGAGACTGA 58.965 52.381 0.00 0.00 0.00 3.41
205 206 2.432146 CGATCCTTCCCATGAGACTGAA 59.568 50.000 0.00 0.00 0.00 3.02
206 207 3.739519 CGATCCTTCCCATGAGACTGAAC 60.740 52.174 0.00 0.00 0.00 3.18
207 208 2.907892 TCCTTCCCATGAGACTGAACT 58.092 47.619 0.00 0.00 0.00 3.01
208 209 2.834549 TCCTTCCCATGAGACTGAACTC 59.165 50.000 0.00 0.00 37.42 3.01
209 210 2.093235 CCTTCCCATGAGACTGAACTCC 60.093 54.545 0.00 0.00 36.22 3.85
210 211 2.325661 TCCCATGAGACTGAACTCCA 57.674 50.000 0.00 0.00 36.22 3.86
211 212 2.619931 TCCCATGAGACTGAACTCCAA 58.380 47.619 0.00 0.00 36.22 3.53
212 213 3.184628 TCCCATGAGACTGAACTCCAAT 58.815 45.455 0.00 0.00 36.22 3.16
213 214 3.198635 TCCCATGAGACTGAACTCCAATC 59.801 47.826 0.00 0.00 36.22 2.67
214 215 3.199508 CCCATGAGACTGAACTCCAATCT 59.800 47.826 0.00 0.00 33.47 2.40
215 216 4.190001 CCATGAGACTGAACTCCAATCTG 58.810 47.826 0.00 0.00 30.49 2.90
216 217 3.325293 TGAGACTGAACTCCAATCTGC 57.675 47.619 0.00 0.00 30.49 4.26
217 218 2.027745 TGAGACTGAACTCCAATCTGCC 60.028 50.000 0.00 0.00 30.49 4.85
218 219 1.980765 AGACTGAACTCCAATCTGCCA 59.019 47.619 0.00 0.00 28.97 4.92
219 220 2.079925 GACTGAACTCCAATCTGCCAC 58.920 52.381 0.00 0.00 0.00 5.01
220 221 1.271597 ACTGAACTCCAATCTGCCACC 60.272 52.381 0.00 0.00 0.00 4.61
221 222 0.321564 TGAACTCCAATCTGCCACCG 60.322 55.000 0.00 0.00 0.00 4.94
222 223 0.036388 GAACTCCAATCTGCCACCGA 60.036 55.000 0.00 0.00 0.00 4.69
223 224 0.400213 AACTCCAATCTGCCACCGAA 59.600 50.000 0.00 0.00 0.00 4.30
224 225 0.321653 ACTCCAATCTGCCACCGAAC 60.322 55.000 0.00 0.00 0.00 3.95
225 226 1.002624 TCCAATCTGCCACCGAACC 60.003 57.895 0.00 0.00 0.00 3.62
226 227 1.002134 CCAATCTGCCACCGAACCT 60.002 57.895 0.00 0.00 0.00 3.50
227 228 0.609131 CCAATCTGCCACCGAACCTT 60.609 55.000 0.00 0.00 0.00 3.50
228 229 0.804989 CAATCTGCCACCGAACCTTC 59.195 55.000 0.00 0.00 0.00 3.46
229 230 0.693049 AATCTGCCACCGAACCTTCT 59.307 50.000 0.00 0.00 0.00 2.85
230 231 0.250513 ATCTGCCACCGAACCTTCTC 59.749 55.000 0.00 0.00 0.00 2.87
231 232 1.118965 TCTGCCACCGAACCTTCTCA 61.119 55.000 0.00 0.00 0.00 3.27
232 233 0.671781 CTGCCACCGAACCTTCTCAG 60.672 60.000 0.00 0.00 0.00 3.35
233 234 2.035442 GCCACCGAACCTTCTCAGC 61.035 63.158 0.00 0.00 0.00 4.26
234 235 1.371183 CCACCGAACCTTCTCAGCA 59.629 57.895 0.00 0.00 0.00 4.41
235 236 0.671781 CCACCGAACCTTCTCAGCAG 60.672 60.000 0.00 0.00 0.00 4.24
236 237 0.318441 CACCGAACCTTCTCAGCAGA 59.682 55.000 0.00 0.00 0.00 4.26
237 238 0.318762 ACCGAACCTTCTCAGCAGAC 59.681 55.000 0.00 0.00 0.00 3.51
238 239 0.318441 CCGAACCTTCTCAGCAGACA 59.682 55.000 0.00 0.00 0.00 3.41
239 240 1.270305 CCGAACCTTCTCAGCAGACAA 60.270 52.381 0.00 0.00 0.00 3.18
240 241 2.483876 CGAACCTTCTCAGCAGACAAA 58.516 47.619 0.00 0.00 0.00 2.83
241 242 2.221981 CGAACCTTCTCAGCAGACAAAC 59.778 50.000 0.00 0.00 0.00 2.93
242 243 3.206150 GAACCTTCTCAGCAGACAAACA 58.794 45.455 0.00 0.00 0.00 2.83
243 244 2.565841 ACCTTCTCAGCAGACAAACAC 58.434 47.619 0.00 0.00 0.00 3.32
244 245 2.092968 ACCTTCTCAGCAGACAAACACA 60.093 45.455 0.00 0.00 0.00 3.72
245 246 2.547211 CCTTCTCAGCAGACAAACACAG 59.453 50.000 0.00 0.00 0.00 3.66
246 247 3.461061 CTTCTCAGCAGACAAACACAGA 58.539 45.455 0.00 0.00 0.00 3.41
247 248 3.103447 TCTCAGCAGACAAACACAGAG 57.897 47.619 0.00 0.00 0.00 3.35
248 249 2.432146 TCTCAGCAGACAAACACAGAGT 59.568 45.455 0.00 0.00 0.00 3.24
249 250 2.543012 CTCAGCAGACAAACACAGAGTG 59.457 50.000 0.00 0.00 39.75 3.51
250 251 2.168313 TCAGCAGACAAACACAGAGTGA 59.832 45.455 3.88 0.00 36.96 3.41
251 252 2.938451 CAGCAGACAAACACAGAGTGAA 59.062 45.455 3.88 0.00 36.96 3.18
252 253 2.939103 AGCAGACAAACACAGAGTGAAC 59.061 45.455 3.88 0.00 36.96 3.18
253 254 2.032178 GCAGACAAACACAGAGTGAACC 59.968 50.000 3.88 0.00 36.96 3.62
254 255 3.535561 CAGACAAACACAGAGTGAACCT 58.464 45.455 3.88 0.00 36.96 3.50
255 256 4.693283 CAGACAAACACAGAGTGAACCTA 58.307 43.478 3.88 0.00 36.96 3.08
256 257 4.747108 CAGACAAACACAGAGTGAACCTAG 59.253 45.833 3.88 0.00 36.96 3.02
257 258 4.649674 AGACAAACACAGAGTGAACCTAGA 59.350 41.667 3.88 0.00 36.96 2.43
258 259 4.694339 ACAAACACAGAGTGAACCTAGAC 58.306 43.478 3.88 0.00 36.96 2.59
259 260 4.406003 ACAAACACAGAGTGAACCTAGACT 59.594 41.667 3.88 0.00 36.96 3.24
260 261 4.857509 AACACAGAGTGAACCTAGACTC 57.142 45.455 3.88 1.89 39.18 3.36
262 263 4.076394 ACACAGAGTGAACCTAGACTCTC 58.924 47.826 8.48 7.03 44.62 3.20
263 264 4.075682 CACAGAGTGAACCTAGACTCTCA 58.924 47.826 8.48 0.00 44.62 3.27
264 265 4.076394 ACAGAGTGAACCTAGACTCTCAC 58.924 47.826 8.48 6.99 44.62 3.51
265 266 4.202524 ACAGAGTGAACCTAGACTCTCACT 60.203 45.833 8.48 10.85 44.62 3.41
266 267 4.764823 CAGAGTGAACCTAGACTCTCACTT 59.235 45.833 8.48 2.55 44.62 3.16
267 268 5.242838 CAGAGTGAACCTAGACTCTCACTTT 59.757 44.000 8.48 5.25 44.62 2.66
268 269 6.431543 CAGAGTGAACCTAGACTCTCACTTTA 59.568 42.308 8.48 0.00 44.62 1.85
269 270 7.122055 CAGAGTGAACCTAGACTCTCACTTTAT 59.878 40.741 8.48 2.01 44.62 1.40
270 271 7.672239 AGAGTGAACCTAGACTCTCACTTTATT 59.328 37.037 13.63 3.31 44.62 1.40
271 272 7.832769 AGTGAACCTAGACTCTCACTTTATTC 58.167 38.462 9.04 0.00 44.71 1.75
272 273 6.748198 GTGAACCTAGACTCTCACTTTATTCG 59.252 42.308 0.00 0.00 36.18 3.34
273 274 6.433404 TGAACCTAGACTCTCACTTTATTCGT 59.567 38.462 0.00 0.00 0.00 3.85
274 275 7.609146 TGAACCTAGACTCTCACTTTATTCGTA 59.391 37.037 0.00 0.00 0.00 3.43
275 276 7.556733 ACCTAGACTCTCACTTTATTCGTAG 57.443 40.000 0.00 0.00 0.00 3.51
276 277 7.111466 ACCTAGACTCTCACTTTATTCGTAGT 58.889 38.462 0.00 0.00 0.00 2.73
277 278 8.263640 ACCTAGACTCTCACTTTATTCGTAGTA 58.736 37.037 0.00 0.00 0.00 1.82
278 279 8.767085 CCTAGACTCTCACTTTATTCGTAGTAG 58.233 40.741 0.00 0.00 0.00 2.57
279 280 9.316730 CTAGACTCTCACTTTATTCGTAGTAGT 57.683 37.037 0.00 0.00 0.00 2.73
280 281 7.976826 AGACTCTCACTTTATTCGTAGTAGTG 58.023 38.462 0.00 0.00 38.00 2.74
281 282 6.553524 ACTCTCACTTTATTCGTAGTAGTGC 58.446 40.000 0.00 0.00 36.91 4.40
282 283 6.374894 ACTCTCACTTTATTCGTAGTAGTGCT 59.625 38.462 0.00 0.00 36.91 4.40
283 284 6.783162 TCTCACTTTATTCGTAGTAGTGCTC 58.217 40.000 0.00 0.00 36.91 4.26
284 285 6.373495 TCTCACTTTATTCGTAGTAGTGCTCA 59.627 38.462 0.00 0.00 36.91 4.26
285 286 6.320171 TCACTTTATTCGTAGTAGTGCTCAC 58.680 40.000 0.00 0.00 36.91 3.51
286 287 6.150641 TCACTTTATTCGTAGTAGTGCTCACT 59.849 38.462 7.73 7.73 45.02 3.41
287 288 7.335171 TCACTTTATTCGTAGTAGTGCTCACTA 59.665 37.037 5.69 5.69 42.54 2.74
288 289 8.129840 CACTTTATTCGTAGTAGTGCTCACTAT 58.870 37.037 12.29 5.48 44.73 2.12
289 290 9.334947 ACTTTATTCGTAGTAGTGCTCACTATA 57.665 33.333 12.29 4.69 44.73 1.31
295 296 7.749808 TCGTAGTAGTGCTCACTATAATATGC 58.250 38.462 12.29 0.00 44.73 3.14
296 297 7.606839 TCGTAGTAGTGCTCACTATAATATGCT 59.393 37.037 12.29 6.27 44.73 3.79
297 298 8.880750 CGTAGTAGTGCTCACTATAATATGCTA 58.119 37.037 12.29 5.45 44.73 3.49
312 313 6.859112 AATATGCTAATAGATCGTCCTGGT 57.141 37.500 0.00 0.00 0.00 4.00
313 314 4.527509 ATGCTAATAGATCGTCCTGGTG 57.472 45.455 0.00 0.00 0.00 4.17
314 315 3.562182 TGCTAATAGATCGTCCTGGTGA 58.438 45.455 0.00 0.00 0.00 4.02
315 316 3.570125 TGCTAATAGATCGTCCTGGTGAG 59.430 47.826 0.00 0.00 0.00 3.51
316 317 3.570550 GCTAATAGATCGTCCTGGTGAGT 59.429 47.826 0.00 0.00 0.00 3.41
317 318 4.557695 GCTAATAGATCGTCCTGGTGAGTG 60.558 50.000 0.00 0.00 0.00 3.51
318 319 2.509166 TAGATCGTCCTGGTGAGTGT 57.491 50.000 0.00 0.00 0.00 3.55
319 320 0.891373 AGATCGTCCTGGTGAGTGTG 59.109 55.000 0.00 0.00 0.00 3.82
320 321 0.603569 GATCGTCCTGGTGAGTGTGT 59.396 55.000 0.00 0.00 0.00 3.72
321 322 0.318441 ATCGTCCTGGTGAGTGTGTG 59.682 55.000 0.00 0.00 0.00 3.82
322 323 0.753848 TCGTCCTGGTGAGTGTGTGA 60.754 55.000 0.00 0.00 0.00 3.58
323 324 0.597637 CGTCCTGGTGAGTGTGTGAC 60.598 60.000 0.00 0.00 0.00 3.67
324 325 0.597637 GTCCTGGTGAGTGTGTGACG 60.598 60.000 0.00 0.00 0.00 4.35
325 326 1.956170 CCTGGTGAGTGTGTGACGC 60.956 63.158 0.00 0.00 0.00 5.19
326 327 1.227234 CTGGTGAGTGTGTGACGCA 60.227 57.895 0.00 0.00 31.00 5.24
327 328 0.809636 CTGGTGAGTGTGTGACGCAA 60.810 55.000 0.00 0.00 35.98 4.85
328 329 0.179059 TGGTGAGTGTGTGACGCAAT 60.179 50.000 0.00 0.00 35.98 3.56
329 330 0.235665 GGTGAGTGTGTGACGCAATG 59.764 55.000 3.04 0.00 35.98 2.82
330 331 0.235665 GTGAGTGTGTGACGCAATGG 59.764 55.000 3.04 0.00 35.98 3.16
344 345 2.352960 CGCAATGGAGAGCTCTTTTACC 59.647 50.000 19.36 14.80 0.00 2.85
360 361 7.148573 GCTCTTTTACCGTACCCTTAAACTAAC 60.149 40.741 0.00 0.00 0.00 2.34
394 395 5.720371 ATTTTTGTCAATCCGATGGTCAA 57.280 34.783 0.00 0.00 0.00 3.18
459 460 4.450080 GTGAAAAGTAACGGAGTACCTTGG 59.550 45.833 0.00 0.00 45.00 3.61
529 532 8.610035 GGGTATTTTAGTATTTTCTCTGGTTCG 58.390 37.037 0.00 0.00 0.00 3.95
534 537 4.741342 AGTATTTTCTCTGGTTCGTACGG 58.259 43.478 16.52 0.00 0.00 4.02
540 543 1.471287 CTCTGGTTCGTACGGATGACA 59.529 52.381 16.52 6.89 0.00 3.58
611 620 0.458543 CTCCACAATCAGGTCCGTCG 60.459 60.000 0.00 0.00 0.00 5.12
665 674 4.753516 TCTCCATTTCTTTATGCCTCGA 57.246 40.909 0.00 0.00 0.00 4.04
699 708 2.417516 CCCTAGCACCCACGATCG 59.582 66.667 14.88 14.88 0.00 3.69
718 727 3.570540 TCGGATCCATCATCTTCAGAGT 58.429 45.455 13.41 0.00 0.00 3.24
810 819 1.071385 GTTGGGATGCAGGATCGAGAT 59.929 52.381 0.00 0.00 30.87 2.75
811 820 2.300152 GTTGGGATGCAGGATCGAGATA 59.700 50.000 0.00 0.00 30.87 1.98
831 840 7.480542 CGAGATATTTGTTTGGAAACTAAACGG 59.519 37.037 4.02 0.00 40.10 4.44
868 878 5.560722 TCCGAAATTATTGGCCTCTATCA 57.439 39.130 3.32 0.00 0.00 2.15
905 915 2.076207 AAAGGCCCAACGTAACCTTT 57.924 45.000 14.72 14.72 45.44 3.11
938 948 0.177373 GTTACCCCTCGTCATGGACC 59.823 60.000 0.00 0.00 0.00 4.46
942 952 4.873129 CCTCGTCATGGACCGCCG 62.873 72.222 0.00 0.00 36.79 6.46
948 958 2.967076 CATGGACCGCCGGATTCG 60.967 66.667 11.71 0.00 36.79 3.34
969 979 3.532542 GTTTGGTACTCCAGTCTATGCC 58.467 50.000 0.00 0.00 45.22 4.40
1052 1062 3.790177 GGGAATTCCGTCGTTCCG 58.210 61.111 18.30 0.00 43.84 4.30
1053 1063 1.216178 GGGAATTCCGTCGTTCCGA 59.784 57.895 18.30 0.00 43.84 4.55
1099 1109 1.664965 GATCGTGATAGCGTGCCCC 60.665 63.158 0.00 0.00 0.00 5.80
1172 1182 3.423154 CAACACCTTCCGCTCGCC 61.423 66.667 0.00 0.00 0.00 5.54
1278 1288 1.407258 CTGATCAAGTCGGAGGAGGTC 59.593 57.143 0.00 0.00 35.02 3.85
1429 1439 2.310779 AGCTAGTGGACAGAGGTTCA 57.689 50.000 0.00 0.00 0.00 3.18
1504 1520 0.108585 GCCTGAGCCGGATTTGGATA 59.891 55.000 5.05 0.00 0.00 2.59
1620 1636 4.493547 CAGTTGGTTGTTTTGTGACACAT 58.506 39.130 9.55 0.00 0.00 3.21
1659 1675 2.982130 GAGTCGGTCATGGCAGGT 59.018 61.111 0.00 0.00 0.00 4.00
1754 1770 2.885644 CGTCGCGATGGAAGGGTG 60.886 66.667 20.66 0.00 0.00 4.61
1798 1814 2.835156 GAGGAGGTTGCTAAGAAGGTCT 59.165 50.000 0.00 0.00 0.00 3.85
1995 2011 1.264020 GCAGTGAGCGTGAAATCAACA 59.736 47.619 0.00 0.00 0.00 3.33
2131 2160 2.377628 TTTCGCGGAGGCACAAGACT 62.378 55.000 6.13 0.00 39.92 3.24
2136 2165 1.202580 GCGGAGGCACAAGACTATCAT 60.203 52.381 0.00 0.00 39.62 2.45
2310 2355 0.036388 ACTCACGGTCGATTGGCATT 60.036 50.000 0.00 0.00 0.00 3.56
2355 2401 5.221322 GCAAGAAACCTCCATCTTTTGACTT 60.221 40.000 0.00 0.00 33.73 3.01
2356 2402 6.016276 GCAAGAAACCTCCATCTTTTGACTTA 60.016 38.462 0.00 0.00 33.73 2.24
2398 2445 1.423921 GGAAAGACTCCCCACCTGAAA 59.576 52.381 0.00 0.00 38.44 2.69
2427 2476 4.345257 TCAAAAGAGGCAGTAACTCAGAGT 59.655 41.667 0.00 0.00 37.43 3.24
2462 2511 4.716794 GAGAAGAGAGGAAATCATGCCAT 58.283 43.478 0.00 0.00 0.00 4.40
2466 2515 6.272792 AGAAGAGAGGAAATCATGCCATAGAT 59.727 38.462 0.00 0.00 0.00 1.98
2490 2539 1.129998 CGTGTCCTCGTAATGTCTCGT 59.870 52.381 0.00 0.00 0.00 4.18
2596 2645 3.225940 CTTTCTTATTCCTGGCATCCCC 58.774 50.000 0.00 0.00 0.00 4.81
2618 2667 4.768968 CCAATCTTCCACAAAATGAGGAGT 59.231 41.667 0.00 0.00 38.34 3.85
2632 2681 2.843730 TGAGGAGTAGCATAAAAGGCCA 59.156 45.455 5.01 0.00 0.00 5.36
2793 2842 0.250166 GTTGTTACACCGAGGGCACT 60.250 55.000 0.00 0.00 0.00 4.40
2880 2929 3.502211 CAGCCAACCGAATATCATAACCC 59.498 47.826 0.00 0.00 0.00 4.11
2986 3036 2.243221 AGAAGGCCTCACCATTAAGCAT 59.757 45.455 5.23 0.00 43.14 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.596082 GTCCAAAATCCACACCACCG 59.404 55.000 0.00 0.00 0.00 4.94
5 6 1.314730 ACGTCCAAAATCCACACCAC 58.685 50.000 0.00 0.00 0.00 4.16
7 8 2.544903 CCAAACGTCCAAAATCCACACC 60.545 50.000 0.00 0.00 0.00 4.16
8 9 2.359531 TCCAAACGTCCAAAATCCACAC 59.640 45.455 0.00 0.00 0.00 3.82
10 11 3.719173 TTCCAAACGTCCAAAATCCAC 57.281 42.857 0.00 0.00 0.00 4.02
12 13 5.804979 CACATATTCCAAACGTCCAAAATCC 59.195 40.000 0.00 0.00 0.00 3.01
13 14 6.307800 CACACATATTCCAAACGTCCAAAATC 59.692 38.462 0.00 0.00 0.00 2.17
14 15 6.155827 CACACATATTCCAAACGTCCAAAAT 58.844 36.000 0.00 0.00 0.00 1.82
15 16 5.067936 ACACACATATTCCAAACGTCCAAAA 59.932 36.000 0.00 0.00 0.00 2.44
16 17 4.580995 ACACACATATTCCAAACGTCCAAA 59.419 37.500 0.00 0.00 0.00 3.28
17 18 4.023622 CACACACATATTCCAAACGTCCAA 60.024 41.667 0.00 0.00 0.00 3.53
18 19 3.500299 CACACACATATTCCAAACGTCCA 59.500 43.478 0.00 0.00 0.00 4.02
19 20 3.500680 ACACACACATATTCCAAACGTCC 59.499 43.478 0.00 0.00 0.00 4.79
20 21 4.024387 ACACACACACATATTCCAAACGTC 60.024 41.667 0.00 0.00 0.00 4.34
21 22 3.880490 ACACACACACATATTCCAAACGT 59.120 39.130 0.00 0.00 0.00 3.99
22 23 4.218265 CACACACACACATATTCCAAACG 58.782 43.478 0.00 0.00 0.00 3.60
23 24 4.975502 CACACACACACACATATTCCAAAC 59.024 41.667 0.00 0.00 0.00 2.93
24 25 4.642437 ACACACACACACACATATTCCAAA 59.358 37.500 0.00 0.00 0.00 3.28
25 26 4.036144 CACACACACACACACATATTCCAA 59.964 41.667 0.00 0.00 0.00 3.53
26 27 3.563390 CACACACACACACACATATTCCA 59.437 43.478 0.00 0.00 0.00 3.53
27 28 3.812609 TCACACACACACACACATATTCC 59.187 43.478 0.00 0.00 0.00 3.01
28 29 4.511454 ACTCACACACACACACACATATTC 59.489 41.667 0.00 0.00 0.00 1.75
29 30 4.273235 CACTCACACACACACACACATATT 59.727 41.667 0.00 0.00 0.00 1.28
30 31 3.809279 CACTCACACACACACACACATAT 59.191 43.478 0.00 0.00 0.00 1.78
31 32 3.118956 TCACTCACACACACACACACATA 60.119 43.478 0.00 0.00 0.00 2.29
32 33 2.009051 CACTCACACACACACACACAT 58.991 47.619 0.00 0.00 0.00 3.21
33 34 1.001406 TCACTCACACACACACACACA 59.999 47.619 0.00 0.00 0.00 3.72
34 35 1.660607 CTCACTCACACACACACACAC 59.339 52.381 0.00 0.00 0.00 3.82
35 36 1.548269 TCTCACTCACACACACACACA 59.452 47.619 0.00 0.00 0.00 3.72
36 37 1.927174 GTCTCACTCACACACACACAC 59.073 52.381 0.00 0.00 0.00 3.82
37 38 1.548269 TGTCTCACTCACACACACACA 59.452 47.619 0.00 0.00 0.00 3.72
38 39 2.196749 CTGTCTCACTCACACACACAC 58.803 52.381 0.00 0.00 0.00 3.82
39 40 1.471501 GCTGTCTCACTCACACACACA 60.472 52.381 0.00 0.00 0.00 3.72
40 41 1.212616 GCTGTCTCACTCACACACAC 58.787 55.000 0.00 0.00 0.00 3.82
41 42 0.249031 CGCTGTCTCACTCACACACA 60.249 55.000 0.00 0.00 0.00 3.72
42 43 0.030773 TCGCTGTCTCACTCACACAC 59.969 55.000 0.00 0.00 0.00 3.82
43 44 0.312102 CTCGCTGTCTCACTCACACA 59.688 55.000 0.00 0.00 0.00 3.72
44 45 0.387878 CCTCGCTGTCTCACTCACAC 60.388 60.000 0.00 0.00 0.00 3.82
45 46 0.537371 TCCTCGCTGTCTCACTCACA 60.537 55.000 0.00 0.00 0.00 3.58
46 47 0.598562 TTCCTCGCTGTCTCACTCAC 59.401 55.000 0.00 0.00 0.00 3.51
47 48 0.884514 CTTCCTCGCTGTCTCACTCA 59.115 55.000 0.00 0.00 0.00 3.41
48 49 1.132262 CTCTTCCTCGCTGTCTCACTC 59.868 57.143 0.00 0.00 0.00 3.51
49 50 1.173043 CTCTTCCTCGCTGTCTCACT 58.827 55.000 0.00 0.00 0.00 3.41
50 51 1.132262 CTCTCTTCCTCGCTGTCTCAC 59.868 57.143 0.00 0.00 0.00 3.51
51 52 1.003696 TCTCTCTTCCTCGCTGTCTCA 59.996 52.381 0.00 0.00 0.00 3.27
52 53 1.670811 CTCTCTCTTCCTCGCTGTCTC 59.329 57.143 0.00 0.00 0.00 3.36
53 54 1.280710 TCTCTCTCTTCCTCGCTGTCT 59.719 52.381 0.00 0.00 0.00 3.41
54 55 1.670811 CTCTCTCTCTTCCTCGCTGTC 59.329 57.143 0.00 0.00 0.00 3.51
55 56 1.280710 TCTCTCTCTCTTCCTCGCTGT 59.719 52.381 0.00 0.00 0.00 4.40
56 57 1.670811 GTCTCTCTCTCTTCCTCGCTG 59.329 57.143 0.00 0.00 0.00 5.18
57 58 1.408266 GGTCTCTCTCTCTTCCTCGCT 60.408 57.143 0.00 0.00 0.00 4.93
58 59 1.021968 GGTCTCTCTCTCTTCCTCGC 58.978 60.000 0.00 0.00 0.00 5.03
59 60 2.288666 CTGGTCTCTCTCTCTTCCTCG 58.711 57.143 0.00 0.00 0.00 4.63
60 61 2.241176 TCCTGGTCTCTCTCTCTTCCTC 59.759 54.545 0.00 0.00 0.00 3.71
61 62 2.283834 TCCTGGTCTCTCTCTCTTCCT 58.716 52.381 0.00 0.00 0.00 3.36
62 63 2.818751 TCCTGGTCTCTCTCTCTTCC 57.181 55.000 0.00 0.00 0.00 3.46
63 64 3.897239 TCATCCTGGTCTCTCTCTCTTC 58.103 50.000 0.00 0.00 0.00 2.87
64 65 4.541250 ATCATCCTGGTCTCTCTCTCTT 57.459 45.455 0.00 0.00 0.00 2.85
65 66 4.541250 AATCATCCTGGTCTCTCTCTCT 57.459 45.455 0.00 0.00 0.00 3.10
66 67 4.648762 TCAAATCATCCTGGTCTCTCTCTC 59.351 45.833 0.00 0.00 0.00 3.20
67 68 4.618635 TCAAATCATCCTGGTCTCTCTCT 58.381 43.478 0.00 0.00 0.00 3.10
68 69 4.648762 TCTCAAATCATCCTGGTCTCTCTC 59.351 45.833 0.00 0.00 0.00 3.20
69 70 4.618635 TCTCAAATCATCCTGGTCTCTCT 58.381 43.478 0.00 0.00 0.00 3.10
70 71 5.299148 CATCTCAAATCATCCTGGTCTCTC 58.701 45.833 0.00 0.00 0.00 3.20
71 72 4.102838 CCATCTCAAATCATCCTGGTCTCT 59.897 45.833 0.00 0.00 0.00 3.10
72 73 4.102210 TCCATCTCAAATCATCCTGGTCTC 59.898 45.833 0.00 0.00 0.00 3.36
73 74 4.042884 TCCATCTCAAATCATCCTGGTCT 58.957 43.478 0.00 0.00 0.00 3.85
74 75 4.102210 TCTCCATCTCAAATCATCCTGGTC 59.898 45.833 0.00 0.00 0.00 4.02
75 76 4.042884 TCTCCATCTCAAATCATCCTGGT 58.957 43.478 0.00 0.00 0.00 4.00
76 77 4.701651 TCTCCATCTCAAATCATCCTGG 57.298 45.455 0.00 0.00 0.00 4.45
77 78 5.866207 TCATCTCCATCTCAAATCATCCTG 58.134 41.667 0.00 0.00 0.00 3.86
78 79 6.272558 TCATCATCTCCATCTCAAATCATCCT 59.727 38.462 0.00 0.00 0.00 3.24
79 80 6.473758 TCATCATCTCCATCTCAAATCATCC 58.526 40.000 0.00 0.00 0.00 3.51
80 81 7.878644 TCTTCATCATCTCCATCTCAAATCATC 59.121 37.037 0.00 0.00 0.00 2.92
81 82 7.746703 TCTTCATCATCTCCATCTCAAATCAT 58.253 34.615 0.00 0.00 0.00 2.45
82 83 7.133133 TCTTCATCATCTCCATCTCAAATCA 57.867 36.000 0.00 0.00 0.00 2.57
83 84 7.932491 TCTTCTTCATCATCTCCATCTCAAATC 59.068 37.037 0.00 0.00 0.00 2.17
84 85 7.803131 TCTTCTTCATCATCTCCATCTCAAAT 58.197 34.615 0.00 0.00 0.00 2.32
85 86 7.191593 TCTTCTTCATCATCTCCATCTCAAA 57.808 36.000 0.00 0.00 0.00 2.69
86 87 6.803366 TCTTCTTCATCATCTCCATCTCAA 57.197 37.500 0.00 0.00 0.00 3.02
87 88 6.155737 TGTTCTTCTTCATCATCTCCATCTCA 59.844 38.462 0.00 0.00 0.00 3.27
88 89 6.580788 TGTTCTTCTTCATCATCTCCATCTC 58.419 40.000 0.00 0.00 0.00 2.75
89 90 6.556974 TGTTCTTCTTCATCATCTCCATCT 57.443 37.500 0.00 0.00 0.00 2.90
90 91 7.046652 TCTTGTTCTTCTTCATCATCTCCATC 58.953 38.462 0.00 0.00 0.00 3.51
91 92 6.955364 TCTTGTTCTTCTTCATCATCTCCAT 58.045 36.000 0.00 0.00 0.00 3.41
92 93 6.212187 TCTCTTGTTCTTCTTCATCATCTCCA 59.788 38.462 0.00 0.00 0.00 3.86
93 94 6.638610 TCTCTTGTTCTTCTTCATCATCTCC 58.361 40.000 0.00 0.00 0.00 3.71
94 95 7.322664 ACTCTCTTGTTCTTCTTCATCATCTC 58.677 38.462 0.00 0.00 0.00 2.75
95 96 7.243604 ACTCTCTTGTTCTTCTTCATCATCT 57.756 36.000 0.00 0.00 0.00 2.90
96 97 7.903995 AACTCTCTTGTTCTTCTTCATCATC 57.096 36.000 0.00 0.00 0.00 2.92
97 98 8.688747 AAAACTCTCTTGTTCTTCTTCATCAT 57.311 30.769 0.00 0.00 0.00 2.45
98 99 9.784531 ATAAAACTCTCTTGTTCTTCTTCATCA 57.215 29.630 0.00 0.00 0.00 3.07
101 102 9.712305 CCTATAAAACTCTCTTGTTCTTCTTCA 57.288 33.333 0.00 0.00 0.00 3.02
102 103 9.157104 CCCTATAAAACTCTCTTGTTCTTCTTC 57.843 37.037 0.00 0.00 0.00 2.87
103 104 8.103935 CCCCTATAAAACTCTCTTGTTCTTCTT 58.896 37.037 0.00 0.00 0.00 2.52
104 105 7.625469 CCCCTATAAAACTCTCTTGTTCTTCT 58.375 38.462 0.00 0.00 0.00 2.85
105 106 6.316640 GCCCCTATAAAACTCTCTTGTTCTTC 59.683 42.308 0.00 0.00 0.00 2.87
106 107 6.181190 GCCCCTATAAAACTCTCTTGTTCTT 58.819 40.000 0.00 0.00 0.00 2.52
107 108 5.627040 CGCCCCTATAAAACTCTCTTGTTCT 60.627 44.000 0.00 0.00 0.00 3.01
108 109 4.571176 CGCCCCTATAAAACTCTCTTGTTC 59.429 45.833 0.00 0.00 0.00 3.18
109 110 4.514401 CGCCCCTATAAAACTCTCTTGTT 58.486 43.478 0.00 0.00 0.00 2.83
110 111 3.681874 GCGCCCCTATAAAACTCTCTTGT 60.682 47.826 0.00 0.00 0.00 3.16
111 112 2.872858 GCGCCCCTATAAAACTCTCTTG 59.127 50.000 0.00 0.00 0.00 3.02
112 113 2.504175 TGCGCCCCTATAAAACTCTCTT 59.496 45.455 4.18 0.00 0.00 2.85
113 114 2.116238 TGCGCCCCTATAAAACTCTCT 58.884 47.619 4.18 0.00 0.00 3.10
114 115 2.614829 TGCGCCCCTATAAAACTCTC 57.385 50.000 4.18 0.00 0.00 3.20
115 116 2.421529 CCTTGCGCCCCTATAAAACTCT 60.422 50.000 4.18 0.00 0.00 3.24
116 117 1.947456 CCTTGCGCCCCTATAAAACTC 59.053 52.381 4.18 0.00 0.00 3.01
117 118 2.022238 GCCTTGCGCCCCTATAAAACT 61.022 52.381 4.18 0.00 0.00 2.66
118 119 0.384309 GCCTTGCGCCCCTATAAAAC 59.616 55.000 4.18 0.00 0.00 2.43
119 120 0.033991 TGCCTTGCGCCCCTATAAAA 60.034 50.000 4.18 0.00 36.24 1.52
120 121 0.033991 TTGCCTTGCGCCCCTATAAA 60.034 50.000 4.18 0.00 36.24 1.40
121 122 0.750182 GTTGCCTTGCGCCCCTATAA 60.750 55.000 4.18 0.00 36.24 0.98
122 123 1.153046 GTTGCCTTGCGCCCCTATA 60.153 57.895 4.18 0.00 36.24 1.31
123 124 2.440247 GTTGCCTTGCGCCCCTAT 60.440 61.111 4.18 0.00 36.24 2.57
132 133 3.964875 AGCCGTTGCGTTGCCTTG 61.965 61.111 0.00 0.00 44.33 3.61
133 134 3.964875 CAGCCGTTGCGTTGCCTT 61.965 61.111 0.00 0.00 44.33 4.35
134 135 4.927782 TCAGCCGTTGCGTTGCCT 62.928 61.111 0.00 0.00 44.33 4.75
135 136 3.737172 ATCAGCCGTTGCGTTGCC 61.737 61.111 0.00 0.00 44.33 4.52
136 137 2.502510 CATCAGCCGTTGCGTTGC 60.503 61.111 0.00 0.00 44.33 4.17
137 138 2.502510 GCATCAGCCGTTGCGTTG 60.503 61.111 0.00 0.00 44.33 4.10
138 139 2.669569 AGCATCAGCCGTTGCGTT 60.670 55.556 0.00 0.00 41.77 4.84
139 140 3.121030 GAGCATCAGCCGTTGCGT 61.121 61.111 0.00 0.00 41.77 5.24
140 141 3.120385 TGAGCATCAGCCGTTGCG 61.120 61.111 0.00 0.00 42.56 4.85
150 151 1.741706 CACAATCACCACCTGAGCATC 59.258 52.381 0.00 0.00 30.20 3.91
151 152 1.074405 ACACAATCACCACCTGAGCAT 59.926 47.619 0.00 0.00 30.20 3.79
152 153 0.473755 ACACAATCACCACCTGAGCA 59.526 50.000 0.00 0.00 30.20 4.26
153 154 1.609208 AACACAATCACCACCTGAGC 58.391 50.000 0.00 0.00 30.20 4.26
154 155 2.294233 CCAAACACAATCACCACCTGAG 59.706 50.000 0.00 0.00 30.20 3.35
155 156 2.092158 TCCAAACACAATCACCACCTGA 60.092 45.455 0.00 0.00 0.00 3.86
156 157 2.034558 GTCCAAACACAATCACCACCTG 59.965 50.000 0.00 0.00 0.00 4.00
157 158 2.091885 AGTCCAAACACAATCACCACCT 60.092 45.455 0.00 0.00 0.00 4.00
158 159 2.306847 AGTCCAAACACAATCACCACC 58.693 47.619 0.00 0.00 0.00 4.61
159 160 3.130340 ACAAGTCCAAACACAATCACCAC 59.870 43.478 0.00 0.00 0.00 4.16
160 161 3.130164 CACAAGTCCAAACACAATCACCA 59.870 43.478 0.00 0.00 0.00 4.17
161 162 3.130340 ACACAAGTCCAAACACAATCACC 59.870 43.478 0.00 0.00 0.00 4.02
162 163 4.351192 GACACAAGTCCAAACACAATCAC 58.649 43.478 0.00 0.00 38.89 3.06
163 164 3.064682 CGACACAAGTCCAAACACAATCA 59.935 43.478 0.00 0.00 41.87 2.57
164 165 3.311322 TCGACACAAGTCCAAACACAATC 59.689 43.478 0.00 0.00 41.87 2.67
165 166 3.275143 TCGACACAAGTCCAAACACAAT 58.725 40.909 0.00 0.00 41.87 2.71
166 167 2.701107 TCGACACAAGTCCAAACACAA 58.299 42.857 0.00 0.00 41.87 3.33
167 168 2.388310 TCGACACAAGTCCAAACACA 57.612 45.000 0.00 0.00 41.87 3.72
168 169 2.223377 GGATCGACACAAGTCCAAACAC 59.777 50.000 0.00 0.00 41.87 3.32
169 170 2.104111 AGGATCGACACAAGTCCAAACA 59.896 45.455 3.47 0.00 41.87 2.83
170 171 2.767505 AGGATCGACACAAGTCCAAAC 58.232 47.619 3.47 0.00 41.87 2.93
171 172 3.399330 GAAGGATCGACACAAGTCCAAA 58.601 45.455 3.47 0.00 41.87 3.28
172 173 2.289444 GGAAGGATCGACACAAGTCCAA 60.289 50.000 3.47 0.00 41.87 3.53
173 174 1.275291 GGAAGGATCGACACAAGTCCA 59.725 52.381 3.47 0.00 41.87 4.02
174 175 1.405661 GGGAAGGATCGACACAAGTCC 60.406 57.143 0.00 0.00 41.87 3.85
175 176 1.275291 TGGGAAGGATCGACACAAGTC 59.725 52.381 0.00 0.00 41.46 3.01
176 177 1.348064 TGGGAAGGATCGACACAAGT 58.652 50.000 0.00 0.00 0.00 3.16
177 178 2.093500 TCATGGGAAGGATCGACACAAG 60.093 50.000 0.00 0.00 0.00 3.16
178 179 1.905894 TCATGGGAAGGATCGACACAA 59.094 47.619 0.00 0.00 0.00 3.33
179 180 1.482182 CTCATGGGAAGGATCGACACA 59.518 52.381 0.00 0.00 0.00 3.72
180 181 1.757118 TCTCATGGGAAGGATCGACAC 59.243 52.381 0.00 0.00 0.00 3.67
181 182 1.757118 GTCTCATGGGAAGGATCGACA 59.243 52.381 0.00 0.00 0.00 4.35
182 183 2.035632 AGTCTCATGGGAAGGATCGAC 58.964 52.381 0.00 0.00 0.00 4.20
183 184 2.034878 CAGTCTCATGGGAAGGATCGA 58.965 52.381 0.00 0.00 0.00 3.59
184 185 2.034878 TCAGTCTCATGGGAAGGATCG 58.965 52.381 0.00 0.00 0.00 3.69
185 186 3.454082 AGTTCAGTCTCATGGGAAGGATC 59.546 47.826 0.00 0.00 0.00 3.36
186 187 3.454082 GAGTTCAGTCTCATGGGAAGGAT 59.546 47.826 0.00 0.00 34.88 3.24
187 188 2.834549 GAGTTCAGTCTCATGGGAAGGA 59.165 50.000 0.00 0.00 34.88 3.36
188 189 2.093235 GGAGTTCAGTCTCATGGGAAGG 60.093 54.545 0.00 0.00 36.30 3.46
189 190 2.568956 TGGAGTTCAGTCTCATGGGAAG 59.431 50.000 0.00 0.00 36.30 3.46
190 191 2.619931 TGGAGTTCAGTCTCATGGGAA 58.380 47.619 0.00 0.00 36.30 3.97
191 192 2.325661 TGGAGTTCAGTCTCATGGGA 57.674 50.000 0.00 0.00 36.30 4.37
192 193 3.199508 AGATTGGAGTTCAGTCTCATGGG 59.800 47.826 0.00 0.00 37.87 4.00
193 194 4.190001 CAGATTGGAGTTCAGTCTCATGG 58.810 47.826 0.00 0.00 39.95 3.66
194 195 3.622163 GCAGATTGGAGTTCAGTCTCATG 59.378 47.826 0.00 0.00 39.95 3.07
195 196 3.370315 GGCAGATTGGAGTTCAGTCTCAT 60.370 47.826 0.00 0.00 39.95 2.90
196 197 2.027745 GGCAGATTGGAGTTCAGTCTCA 60.028 50.000 0.00 0.00 39.95 3.27
197 198 2.027745 TGGCAGATTGGAGTTCAGTCTC 60.028 50.000 0.00 0.00 39.95 3.36
198 199 1.980765 TGGCAGATTGGAGTTCAGTCT 59.019 47.619 0.00 0.00 42.22 3.24
199 200 2.079925 GTGGCAGATTGGAGTTCAGTC 58.920 52.381 0.00 0.00 32.93 3.51
200 201 1.271597 GGTGGCAGATTGGAGTTCAGT 60.272 52.381 0.00 0.00 0.00 3.41
201 202 1.457346 GGTGGCAGATTGGAGTTCAG 58.543 55.000 0.00 0.00 0.00 3.02
202 203 0.321564 CGGTGGCAGATTGGAGTTCA 60.322 55.000 0.00 0.00 0.00 3.18
203 204 0.036388 TCGGTGGCAGATTGGAGTTC 60.036 55.000 0.00 0.00 0.00 3.01
204 205 0.400213 TTCGGTGGCAGATTGGAGTT 59.600 50.000 0.00 0.00 0.00 3.01
205 206 0.321653 GTTCGGTGGCAGATTGGAGT 60.322 55.000 0.00 0.00 0.00 3.85
206 207 1.026718 GGTTCGGTGGCAGATTGGAG 61.027 60.000 0.00 0.00 0.00 3.86
207 208 1.002624 GGTTCGGTGGCAGATTGGA 60.003 57.895 0.00 0.00 0.00 3.53
208 209 0.609131 AAGGTTCGGTGGCAGATTGG 60.609 55.000 0.00 0.00 0.00 3.16
209 210 0.804989 GAAGGTTCGGTGGCAGATTG 59.195 55.000 0.00 0.00 0.00 2.67
210 211 0.693049 AGAAGGTTCGGTGGCAGATT 59.307 50.000 0.00 0.00 0.00 2.40
211 212 0.250513 GAGAAGGTTCGGTGGCAGAT 59.749 55.000 0.00 0.00 0.00 2.90
212 213 1.118965 TGAGAAGGTTCGGTGGCAGA 61.119 55.000 0.00 0.00 0.00 4.26
213 214 0.671781 CTGAGAAGGTTCGGTGGCAG 60.672 60.000 0.00 0.00 0.00 4.85
214 215 1.371183 CTGAGAAGGTTCGGTGGCA 59.629 57.895 0.00 0.00 0.00 4.92
215 216 2.035442 GCTGAGAAGGTTCGGTGGC 61.035 63.158 0.00 0.00 0.00 5.01
216 217 0.671781 CTGCTGAGAAGGTTCGGTGG 60.672 60.000 0.00 0.00 0.00 4.61
217 218 0.318441 TCTGCTGAGAAGGTTCGGTG 59.682 55.000 0.00 0.00 0.00 4.94
218 219 0.318762 GTCTGCTGAGAAGGTTCGGT 59.681 55.000 0.00 0.00 0.00 4.69
219 220 0.318441 TGTCTGCTGAGAAGGTTCGG 59.682 55.000 0.00 0.00 0.00 4.30
220 221 2.154854 TTGTCTGCTGAGAAGGTTCG 57.845 50.000 0.00 0.00 0.00 3.95
221 222 3.002759 GTGTTTGTCTGCTGAGAAGGTTC 59.997 47.826 3.46 0.00 0.00 3.62
222 223 2.945668 GTGTTTGTCTGCTGAGAAGGTT 59.054 45.455 3.46 0.00 0.00 3.50
223 224 2.092968 TGTGTTTGTCTGCTGAGAAGGT 60.093 45.455 3.46 0.00 0.00 3.50
224 225 2.547211 CTGTGTTTGTCTGCTGAGAAGG 59.453 50.000 3.46 0.00 0.00 3.46
225 226 3.461061 TCTGTGTTTGTCTGCTGAGAAG 58.539 45.455 3.46 0.00 0.00 2.85
226 227 3.118629 ACTCTGTGTTTGTCTGCTGAGAA 60.119 43.478 0.00 0.00 33.24 2.87
227 228 2.432146 ACTCTGTGTTTGTCTGCTGAGA 59.568 45.455 0.00 0.00 33.24 3.27
228 229 2.543012 CACTCTGTGTTTGTCTGCTGAG 59.457 50.000 0.00 0.00 34.51 3.35
229 230 2.168313 TCACTCTGTGTTTGTCTGCTGA 59.832 45.455 0.00 0.00 34.79 4.26
230 231 2.554142 TCACTCTGTGTTTGTCTGCTG 58.446 47.619 0.00 0.00 34.79 4.41
231 232 2.939103 GTTCACTCTGTGTTTGTCTGCT 59.061 45.455 0.00 0.00 34.79 4.24
232 233 2.032178 GGTTCACTCTGTGTTTGTCTGC 59.968 50.000 0.00 0.00 34.79 4.26
233 234 3.535561 AGGTTCACTCTGTGTTTGTCTG 58.464 45.455 0.00 0.00 34.79 3.51
234 235 3.914426 AGGTTCACTCTGTGTTTGTCT 57.086 42.857 0.00 0.00 34.79 3.41
235 236 4.745620 GTCTAGGTTCACTCTGTGTTTGTC 59.254 45.833 0.00 0.00 34.79 3.18
236 237 4.406003 AGTCTAGGTTCACTCTGTGTTTGT 59.594 41.667 0.00 0.00 34.79 2.83
237 238 4.950050 AGTCTAGGTTCACTCTGTGTTTG 58.050 43.478 0.00 0.00 34.79 2.93
238 239 4.896482 AGAGTCTAGGTTCACTCTGTGTTT 59.104 41.667 10.24 0.00 46.26 2.83
239 240 4.475345 AGAGTCTAGGTTCACTCTGTGTT 58.525 43.478 10.24 0.00 46.26 3.32
240 241 4.107127 AGAGTCTAGGTTCACTCTGTGT 57.893 45.455 10.24 0.00 46.26 3.72
245 246 5.715434 AAAGTGAGAGTCTAGGTTCACTC 57.285 43.478 11.23 9.47 46.91 3.51
247 248 6.748198 CGAATAAAGTGAGAGTCTAGGTTCAC 59.252 42.308 0.00 0.00 40.08 3.18
248 249 6.433404 ACGAATAAAGTGAGAGTCTAGGTTCA 59.567 38.462 0.00 0.00 0.00 3.18
249 250 6.854778 ACGAATAAAGTGAGAGTCTAGGTTC 58.145 40.000 0.00 0.00 0.00 3.62
250 251 6.837471 ACGAATAAAGTGAGAGTCTAGGTT 57.163 37.500 0.00 0.00 0.00 3.50
251 252 7.111466 ACTACGAATAAAGTGAGAGTCTAGGT 58.889 38.462 0.00 0.00 0.00 3.08
252 253 7.556733 ACTACGAATAAAGTGAGAGTCTAGG 57.443 40.000 0.00 0.00 0.00 3.02
253 254 9.316730 ACTACTACGAATAAAGTGAGAGTCTAG 57.683 37.037 0.00 0.00 0.00 2.43
254 255 9.096160 CACTACTACGAATAAAGTGAGAGTCTA 57.904 37.037 0.00 0.00 39.93 2.59
255 256 7.414319 GCACTACTACGAATAAAGTGAGAGTCT 60.414 40.741 5.03 0.00 39.93 3.24
256 257 6.687958 GCACTACTACGAATAAAGTGAGAGTC 59.312 42.308 5.03 0.00 39.93 3.36
257 258 6.374894 AGCACTACTACGAATAAAGTGAGAGT 59.625 38.462 5.03 0.00 39.93 3.24
258 259 6.787225 AGCACTACTACGAATAAAGTGAGAG 58.213 40.000 5.03 0.00 39.93 3.20
259 260 6.373495 TGAGCACTACTACGAATAAAGTGAGA 59.627 38.462 5.03 0.00 39.93 3.27
260 261 6.469595 GTGAGCACTACTACGAATAAAGTGAG 59.530 42.308 5.03 0.00 39.93 3.51
261 262 6.150641 AGTGAGCACTACTACGAATAAAGTGA 59.849 38.462 0.41 0.00 40.43 3.41
262 263 6.323266 AGTGAGCACTACTACGAATAAAGTG 58.677 40.000 0.41 0.00 40.43 3.16
263 264 6.512342 AGTGAGCACTACTACGAATAAAGT 57.488 37.500 0.41 0.00 40.43 2.66
269 270 8.235226 GCATATTATAGTGAGCACTACTACGAA 58.765 37.037 12.16 3.70 45.61 3.85
270 271 7.606839 AGCATATTATAGTGAGCACTACTACGA 59.393 37.037 12.16 0.00 45.61 3.43
271 272 7.753659 AGCATATTATAGTGAGCACTACTACG 58.246 38.462 12.16 2.03 45.61 3.51
286 287 9.642343 ACCAGGACGATCTATTAGCATATTATA 57.358 33.333 0.00 0.00 0.00 0.98
287 288 8.417106 CACCAGGACGATCTATTAGCATATTAT 58.583 37.037 0.00 0.00 0.00 1.28
288 289 7.614192 TCACCAGGACGATCTATTAGCATATTA 59.386 37.037 0.00 0.00 0.00 0.98
289 290 6.437477 TCACCAGGACGATCTATTAGCATATT 59.563 38.462 0.00 0.00 0.00 1.28
290 291 5.952347 TCACCAGGACGATCTATTAGCATAT 59.048 40.000 0.00 0.00 0.00 1.78
291 292 5.321927 TCACCAGGACGATCTATTAGCATA 58.678 41.667 0.00 0.00 0.00 3.14
292 293 4.152647 TCACCAGGACGATCTATTAGCAT 58.847 43.478 0.00 0.00 0.00 3.79
293 294 3.562182 TCACCAGGACGATCTATTAGCA 58.438 45.455 0.00 0.00 0.00 3.49
294 295 3.570550 ACTCACCAGGACGATCTATTAGC 59.429 47.826 0.00 0.00 0.00 3.09
295 296 4.580995 ACACTCACCAGGACGATCTATTAG 59.419 45.833 0.00 0.00 0.00 1.73
296 297 4.338400 CACACTCACCAGGACGATCTATTA 59.662 45.833 0.00 0.00 0.00 0.98
297 298 3.131223 CACACTCACCAGGACGATCTATT 59.869 47.826 0.00 0.00 0.00 1.73
298 299 2.690497 CACACTCACCAGGACGATCTAT 59.310 50.000 0.00 0.00 0.00 1.98
299 300 2.092323 CACACTCACCAGGACGATCTA 58.908 52.381 0.00 0.00 0.00 1.98
300 301 0.891373 CACACTCACCAGGACGATCT 59.109 55.000 0.00 0.00 0.00 2.75
301 302 0.603569 ACACACTCACCAGGACGATC 59.396 55.000 0.00 0.00 0.00 3.69
302 303 0.318441 CACACACTCACCAGGACGAT 59.682 55.000 0.00 0.00 0.00 3.73
303 304 0.753848 TCACACACTCACCAGGACGA 60.754 55.000 0.00 0.00 0.00 4.20
304 305 0.597637 GTCACACACTCACCAGGACG 60.598 60.000 0.00 0.00 0.00 4.79
305 306 0.597637 CGTCACACACTCACCAGGAC 60.598 60.000 0.00 0.00 0.00 3.85
306 307 1.739667 CGTCACACACTCACCAGGA 59.260 57.895 0.00 0.00 0.00 3.86
307 308 1.956170 GCGTCACACACTCACCAGG 60.956 63.158 0.00 0.00 0.00 4.45
308 309 0.809636 TTGCGTCACACACTCACCAG 60.810 55.000 0.00 0.00 0.00 4.00
309 310 0.179059 ATTGCGTCACACACTCACCA 60.179 50.000 0.00 0.00 0.00 4.17
310 311 0.235665 CATTGCGTCACACACTCACC 59.764 55.000 0.00 0.00 0.00 4.02
311 312 0.235665 CCATTGCGTCACACACTCAC 59.764 55.000 0.00 0.00 0.00 3.51
312 313 0.105778 TCCATTGCGTCACACACTCA 59.894 50.000 0.00 0.00 0.00 3.41
313 314 0.792640 CTCCATTGCGTCACACACTC 59.207 55.000 0.00 0.00 0.00 3.51
314 315 0.392706 TCTCCATTGCGTCACACACT 59.607 50.000 0.00 0.00 0.00 3.55
315 316 0.792640 CTCTCCATTGCGTCACACAC 59.207 55.000 0.00 0.00 0.00 3.82
316 317 0.950555 GCTCTCCATTGCGTCACACA 60.951 55.000 0.00 0.00 0.00 3.72
317 318 0.671781 AGCTCTCCATTGCGTCACAC 60.672 55.000 0.00 0.00 0.00 3.82
318 319 0.390340 GAGCTCTCCATTGCGTCACA 60.390 55.000 6.43 0.00 0.00 3.58
319 320 0.108424 AGAGCTCTCCATTGCGTCAC 60.108 55.000 11.45 0.00 0.00 3.67
320 321 0.610174 AAGAGCTCTCCATTGCGTCA 59.390 50.000 18.55 0.00 0.00 4.35
321 322 1.731720 AAAGAGCTCTCCATTGCGTC 58.268 50.000 18.55 0.00 0.00 5.19
322 323 2.191128 AAAAGAGCTCTCCATTGCGT 57.809 45.000 18.55 0.00 0.00 5.24
323 324 2.352960 GGTAAAAGAGCTCTCCATTGCG 59.647 50.000 18.55 0.00 0.00 4.85
324 325 2.352960 CGGTAAAAGAGCTCTCCATTGC 59.647 50.000 18.55 15.09 0.00 3.56
325 326 3.600388 ACGGTAAAAGAGCTCTCCATTG 58.400 45.455 18.55 8.38 0.00 2.82
326 327 3.983044 ACGGTAAAAGAGCTCTCCATT 57.017 42.857 18.55 14.68 0.00 3.16
327 328 3.132467 GGTACGGTAAAAGAGCTCTCCAT 59.868 47.826 18.55 4.72 0.00 3.41
328 329 2.494870 GGTACGGTAAAAGAGCTCTCCA 59.505 50.000 18.55 1.92 0.00 3.86
329 330 2.159128 GGGTACGGTAAAAGAGCTCTCC 60.159 54.545 18.55 12.91 0.00 3.71
330 331 2.759535 AGGGTACGGTAAAAGAGCTCTC 59.240 50.000 18.55 3.91 0.00 3.20
344 345 5.531634 TGTCTGTGTTAGTTTAAGGGTACG 58.468 41.667 0.00 0.00 0.00 3.67
360 361 7.301054 GGATTGACAAAAATAGACTGTCTGTG 58.699 38.462 20.19 11.75 40.14 3.66
459 460 5.034797 GCGATTACTATTTTGCCCTTTGAC 58.965 41.667 0.00 0.00 0.00 3.18
529 532 1.160329 GGGCTGCATGTCATCCGTAC 61.160 60.000 0.50 0.00 31.77 3.67
534 537 0.745845 AACGAGGGCTGCATGTCATC 60.746 55.000 0.50 0.00 0.00 2.92
540 543 0.739813 GACGTAAACGAGGGCTGCAT 60.740 55.000 9.86 0.00 43.02 3.96
579 588 2.284625 TGGAGGGACGAGCATGGT 60.285 61.111 0.00 0.00 0.00 3.55
633 642 2.303022 AGAAATGGAGAAAGACGGAGCA 59.697 45.455 0.00 0.00 0.00 4.26
665 674 2.732658 GGTGTCGTTCGTGGAGGT 59.267 61.111 0.00 0.00 0.00 3.85
699 708 4.837860 ACCTACTCTGAAGATGATGGATCC 59.162 45.833 4.20 4.20 0.00 3.36
718 727 4.785914 TCACTCCATGGGAATTTGTACCTA 59.214 41.667 13.02 0.00 0.00 3.08
810 819 7.330900 TGACCGTTTAGTTTCCAAACAAATA 57.669 32.000 5.03 0.00 41.30 1.40
811 820 6.210287 TGACCGTTTAGTTTCCAAACAAAT 57.790 33.333 5.03 0.00 41.30 2.32
831 840 2.501610 GGATCTCACGGCCCTGAC 59.498 66.667 0.00 0.00 0.00 3.51
884 894 2.076207 AGGTTACGTTGGGCCTTTTT 57.924 45.000 4.53 0.00 0.00 1.94
905 915 5.570034 CGAGGGGTAACTTAGTCATTTTCCA 60.570 44.000 0.00 0.00 0.00 3.53
938 948 0.738412 AGTACCAAACGAATCCGGCG 60.738 55.000 0.00 0.00 40.78 6.46
942 952 3.056035 AGACTGGAGTACCAAACGAATCC 60.056 47.826 0.00 0.00 46.32 3.01
948 958 3.055385 TGGCATAGACTGGAGTACCAAAC 60.055 47.826 0.00 0.00 46.32 2.93
1069 1079 1.324383 TCACGATCCATAAGCCGCTA 58.676 50.000 0.00 0.00 0.00 4.26
1099 1109 4.860907 GCTCATGTTTAGAAATGCCTTGTG 59.139 41.667 0.00 0.00 0.00 3.33
1407 1417 2.614134 ACCTCTGTCCACTAGCTTCT 57.386 50.000 0.00 0.00 0.00 2.85
1429 1439 4.760047 GCTCCGCACGACCCACAT 62.760 66.667 0.00 0.00 0.00 3.21
1554 1570 2.359850 GGCGCCCATGACTTCACA 60.360 61.111 18.11 0.00 0.00 3.58
1599 1615 4.799564 ATGTGTCACAAAACAACCAACT 57.200 36.364 10.28 0.00 0.00 3.16
1620 1636 0.465460 GCACTGAGTTCCACCCACAA 60.465 55.000 0.00 0.00 0.00 3.33
1659 1675 1.739929 CCACGCTAACATCGGCACA 60.740 57.895 0.00 0.00 0.00 4.57
1754 1770 0.173708 CTCTACCACCTCCTTGTCGC 59.826 60.000 0.00 0.00 0.00 5.19
1798 1814 0.325203 TCGGAGTCCATCATCCACCA 60.325 55.000 10.49 0.00 35.14 4.17
1937 1953 4.099120 CACGGTCAATTCAAAACGTCAAA 58.901 39.130 0.00 0.00 31.61 2.69
2101 2130 3.323243 CCTCCGCGAAAAAGAAGTCTTA 58.677 45.455 8.23 0.00 34.61 2.10
2104 2133 0.166161 GCCTCCGCGAAAAAGAAGTC 59.834 55.000 8.23 0.00 0.00 3.01
2109 2138 0.385974 CTTGTGCCTCCGCGAAAAAG 60.386 55.000 8.23 0.00 38.08 2.27
2115 2144 0.872021 GATAGTCTTGTGCCTCCGCG 60.872 60.000 0.00 0.00 38.08 6.46
2131 2160 4.169059 AGCACATGGGCAAGTTATGATA 57.831 40.909 24.51 0.00 35.83 2.15
2136 2165 2.817258 GTGTAAGCACATGGGCAAGTTA 59.183 45.455 24.51 9.48 44.64 2.24
2189 2218 5.763088 TGTAACAAACGCAAATTGATAGCA 58.237 33.333 0.00 0.00 0.00 3.49
2265 2294 4.202430 ACAACGGGAGGAAAATCTAACACT 60.202 41.667 0.00 0.00 0.00 3.55
2310 2355 0.963225 TAGCACTAGCACCACAACGA 59.037 50.000 0.00 0.00 45.49 3.85
2398 2445 8.635765 TGAGTTACTGCCTCTTTTGAAATATT 57.364 30.769 0.00 0.00 0.00 1.28
2427 2476 7.698506 TCCTCTCTTCTCGTAATCTGTAAAA 57.301 36.000 0.00 0.00 0.00 1.52
2462 2511 0.179076 TACGAGGACACGCCGATCTA 60.179 55.000 0.00 0.00 43.43 1.98
2466 2515 1.138036 CATTACGAGGACACGCCGA 59.862 57.895 0.00 0.00 43.43 5.54
2490 2539 4.675976 TTTGGTCTCACCGTCTTAAGAA 57.324 40.909 6.78 0.00 42.58 2.52
2596 2645 5.972107 ACTCCTCATTTTGTGGAAGATTG 57.028 39.130 0.56 0.00 39.27 2.67
2618 2667 3.509575 CCACAGTTTGGCCTTTTATGCTA 59.490 43.478 3.32 0.00 39.07 3.49
2632 2681 4.892965 TGCTGCCCGCCACAGTTT 62.893 61.111 0.00 0.00 37.47 2.66
2649 2698 2.191375 CACCATGCTCCTGCCGAT 59.809 61.111 0.00 0.00 38.71 4.18
2655 2704 1.202330 CTCTTCTCCACCATGCTCCT 58.798 55.000 0.00 0.00 0.00 3.69
2793 2842 0.611062 ACCATCTTGGACTCGGACGA 60.611 55.000 0.00 0.00 40.96 4.20
2880 2929 1.889170 GGACTCAAGAGCCCCAAAAAG 59.111 52.381 0.00 0.00 0.00 2.27
2889 2938 2.678336 CGGTTATTTGGGACTCAAGAGC 59.322 50.000 0.00 0.00 36.62 4.09
2986 3036 1.153086 GTACCGGACTCTAGGCGGA 60.153 63.158 9.46 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.