Multiple sequence alignment - TraesCS2D01G164700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G164700 chr2D 100.000 2810 0 0 1 2810 109075341 109078150 0.000000e+00 5190
1 TraesCS2D01G164700 chr2D 96.164 391 11 1 2420 2810 109093250 109093636 1.100000e-178 636
2 TraesCS2D01G164700 chr2D 96.164 391 11 1 2420 2810 178752914 178752528 1.100000e-178 636
3 TraesCS2D01G164700 chr2B 93.265 980 28 18 927 1902 158650310 158651255 0.000000e+00 1410
4 TraesCS2D01G164700 chr2B 94.932 888 28 9 1 878 158649310 158650190 0.000000e+00 1375
5 TraesCS2D01G164700 chr2B 94.095 525 19 4 1902 2419 158776181 158776700 0.000000e+00 787
6 TraesCS2D01G164700 chr2A 88.854 942 49 31 927 1849 104977934 104978838 0.000000e+00 1107
7 TraesCS2D01G164700 chr2A 97.343 527 14 0 1838 2364 104979050 104979576 0.000000e+00 896
8 TraesCS2D01G164700 chr2A 92.698 315 14 4 23 333 104977083 104977392 1.990000e-121 446
9 TraesCS2D01G164700 chr6D 96.675 391 9 2 2420 2810 68756505 68756891 0.000000e+00 647
10 TraesCS2D01G164700 chr6D 95.908 391 12 2 2420 2810 289383414 289383028 5.110000e-177 630
11 TraesCS2D01G164700 chr7D 96.429 392 10 2 2419 2810 324330317 324329930 0.000000e+00 643
12 TraesCS2D01G164700 chr4D 96.164 391 11 1 2420 2810 234672631 234673017 1.100000e-178 636
13 TraesCS2D01G164700 chr4D 96.164 391 11 1 2420 2810 234679423 234679809 1.100000e-178 636
14 TraesCS2D01G164700 chr4D 95.929 393 11 3 2419 2810 468163500 468163112 1.420000e-177 632
15 TraesCS2D01G164700 chr3D 95.674 393 13 3 2418 2810 132583479 132583091 1.840000e-176 628
16 TraesCS2D01G164700 chr3D 88.333 300 35 0 1152 1451 96677254 96677553 7.400000e-96 361
17 TraesCS2D01G164700 chr3D 84.568 324 40 7 1208 1526 166966611 166966293 2.100000e-81 313
18 TraesCS2D01G164700 chr3D 83.746 283 46 0 1179 1461 532168644 532168362 4.610000e-68 268
19 TraesCS2D01G164700 chr3A 86.751 317 41 1 1152 1468 114544723 114545038 4.450000e-93 351
20 TraesCS2D01G164700 chr3A 82.000 200 36 0 1254 1453 112915888 112915689 1.340000e-38 171
21 TraesCS2D01G164700 chr3B 84.918 305 43 2 1152 1453 704323043 704322739 3.520000e-79 305
22 TraesCS2D01G164700 chr3B 83.784 296 42 2 1152 1441 147776326 147776621 2.760000e-70 276


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G164700 chr2D 109075341 109078150 2809 False 5190.000000 5190 100.0000 1 2810 1 chr2D.!!$F1 2809
1 TraesCS2D01G164700 chr2B 158649310 158651255 1945 False 1392.500000 1410 94.0985 1 1902 2 chr2B.!!$F2 1901
2 TraesCS2D01G164700 chr2B 158776181 158776700 519 False 787.000000 787 94.0950 1902 2419 1 chr2B.!!$F1 517
3 TraesCS2D01G164700 chr2A 104977083 104979576 2493 False 816.333333 1107 92.9650 23 2364 3 chr2A.!!$F1 2341

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
355 362 0.82501 GATGGGCCTTGCATAGTGGG 60.825 60.0 4.53 0.0 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1816 2240 0.106719 GCTGATCCGGGGAATCCAAA 60.107 55.0 0.0 0.0 34.36 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 4.494091 AATCTGAGGGTGTAATGTGGAG 57.506 45.455 0.00 0.00 0.00 3.86
156 157 1.486211 ATTTCGACGTGAGGAGGGAT 58.514 50.000 0.00 0.00 0.00 3.85
184 185 1.049289 AGGTACGGAGAGGGAATGCC 61.049 60.000 0.00 0.00 0.00 4.40
261 264 3.495331 GGGGCAAAATTTTGGGTTCAAT 58.505 40.909 27.60 0.00 38.57 2.57
280 283 2.526624 GGTTTGGGGCTTTGGGCT 60.527 61.111 0.00 0.00 41.46 5.19
355 362 0.825010 GATGGGCCTTGCATAGTGGG 60.825 60.000 4.53 0.00 0.00 4.61
356 363 2.123726 GGGCCTTGCATAGTGGGG 60.124 66.667 0.84 0.00 0.00 4.96
461 647 2.964389 GCGATCTTGGAGCTCCGC 60.964 66.667 27.43 20.86 39.43 5.54
642 828 4.735132 CACGCCGCCTTTCCTCGA 62.735 66.667 0.00 0.00 0.00 4.04
648 834 2.815647 GCCTTTCCTCGACGCCTG 60.816 66.667 0.00 0.00 0.00 4.85
649 835 2.125512 CCTTTCCTCGACGCCTGG 60.126 66.667 0.00 0.00 0.00 4.45
650 836 2.646175 CCTTTCCTCGACGCCTGGA 61.646 63.158 0.00 0.00 0.00 3.86
732 918 1.990060 TTCAGAGGGGGAAGGCGAG 60.990 63.158 0.00 0.00 0.00 5.03
835 1021 2.929398 GCCGCAAAATTTCATGGTTAGG 59.071 45.455 0.00 0.00 0.00 2.69
859 1045 2.668632 GATGTGTGGGCGGAAGGA 59.331 61.111 0.00 0.00 0.00 3.36
860 1046 1.450312 GATGTGTGGGCGGAAGGAG 60.450 63.158 0.00 0.00 0.00 3.69
861 1047 2.876368 GATGTGTGGGCGGAAGGAGG 62.876 65.000 0.00 0.00 0.00 4.30
862 1048 3.319198 GTGTGGGCGGAAGGAGGA 61.319 66.667 0.00 0.00 0.00 3.71
878 1064 2.182030 GAGACGACGCCAGGGAAG 59.818 66.667 0.00 0.00 0.00 3.46
880 1066 2.182030 GACGACGCCAGGGAAGAG 59.818 66.667 0.00 0.00 0.00 2.85
881 1067 3.358076 GACGACGCCAGGGAAGAGG 62.358 68.421 0.00 0.00 0.00 3.69
882 1068 4.148825 CGACGCCAGGGAAGAGGG 62.149 72.222 0.00 0.00 0.00 4.30
883 1069 3.787001 GACGCCAGGGAAGAGGGG 61.787 72.222 0.00 0.00 42.95 4.79
889 1107 1.210885 CCAGGGAAGAGGGGAGCTTT 61.211 60.000 0.00 0.00 0.00 3.51
922 1152 1.349688 TCACAGCCCGGATAAGTGTTT 59.650 47.619 0.73 0.00 0.00 2.83
924 1154 1.073284 ACAGCCCGGATAAGTGTTTGT 59.927 47.619 0.73 0.00 0.00 2.83
925 1155 2.303600 ACAGCCCGGATAAGTGTTTGTA 59.696 45.455 0.73 0.00 0.00 2.41
929 1335 4.407945 AGCCCGGATAAGTGTTTGTAGTAT 59.592 41.667 0.73 0.00 0.00 2.12
1105 1523 1.952296 AGCTTCCTTTCTTGTGTGCTG 59.048 47.619 0.00 0.00 0.00 4.41
1107 1525 2.542411 GCTTCCTTTCTTGTGTGCTGTG 60.542 50.000 0.00 0.00 0.00 3.66
1159 1577 0.676466 TGAAATCCATCGCGCAAGGT 60.676 50.000 8.75 0.00 38.28 3.50
1330 1748 1.280457 GACCAGGACAAGGAGTGGAT 58.720 55.000 0.00 0.00 33.95 3.41
1533 1955 8.818057 AGTTCGTATTTGTCAGATATGTTTAGC 58.182 33.333 3.27 0.00 0.00 3.09
1720 2142 6.149308 TCTCACGATACTTGATTGCAACAAAT 59.851 34.615 0.00 1.05 0.00 2.32
1937 2584 2.092212 CCATCTACAAGCCCACAAGGAT 60.092 50.000 0.00 0.00 38.24 3.24
2060 2707 1.074566 CTTCCTCAAGCACTTCCCCTT 59.925 52.381 0.00 0.00 0.00 3.95
2118 2765 7.399765 CCTCCCTCTTGTATCTATGATGAATCT 59.600 40.741 0.00 0.00 0.00 2.40
2142 2789 6.027025 AGTATGGTAGATTGACTGAGGGTA 57.973 41.667 0.00 0.00 0.00 3.69
2273 2922 7.411049 CCGAAGAACAAACAAACAAGTAAAACC 60.411 37.037 0.00 0.00 0.00 3.27
2389 3043 2.158871 TGTAAAACTCGTGGCCTTGAGT 60.159 45.455 20.52 20.52 46.98 3.41
2393 3047 1.734477 CTCGTGGCCTTGAGTGACG 60.734 63.158 14.52 9.49 0.00 4.35
2399 3053 3.048602 CCTTGAGTGACGGACGGT 58.951 61.111 0.00 0.00 0.00 4.83
2406 3060 3.740397 TGACGGACGGTAGCACGG 61.740 66.667 0.00 0.36 38.39 4.94
2411 3065 3.152400 GACGGTAGCACGGGGGAT 61.152 66.667 0.00 0.00 38.39 3.85
2431 3085 3.893399 GGGGGTGTTGGGGAACGT 61.893 66.667 0.00 0.00 0.00 3.99
2432 3086 2.527893 GGGGGTGTTGGGGAACGTA 61.528 63.158 0.00 0.00 0.00 3.57
2433 3087 1.002990 GGGGTGTTGGGGAACGTAG 60.003 63.158 0.00 0.00 0.00 3.51
2435 3089 0.975887 GGGTGTTGGGGAACGTAGTA 59.024 55.000 0.00 0.00 45.00 1.82
2436 3090 1.347378 GGGTGTTGGGGAACGTAGTAA 59.653 52.381 0.00 0.00 45.00 2.24
2437 3091 2.026915 GGGTGTTGGGGAACGTAGTAAT 60.027 50.000 0.00 0.00 45.00 1.89
2438 3092 3.559811 GGGTGTTGGGGAACGTAGTAATT 60.560 47.826 0.00 0.00 45.00 1.40
2439 3093 4.074259 GGTGTTGGGGAACGTAGTAATTT 58.926 43.478 0.00 0.00 45.00 1.82
2440 3094 4.154737 GGTGTTGGGGAACGTAGTAATTTC 59.845 45.833 0.00 0.00 45.00 2.17
2441 3095 4.756135 GTGTTGGGGAACGTAGTAATTTCA 59.244 41.667 0.00 0.00 45.00 2.69
2442 3096 5.239087 GTGTTGGGGAACGTAGTAATTTCAA 59.761 40.000 0.00 0.00 45.00 2.69
2443 3097 5.826737 TGTTGGGGAACGTAGTAATTTCAAA 59.173 36.000 0.00 0.00 45.00 2.69
2444 3098 6.320672 TGTTGGGGAACGTAGTAATTTCAAAA 59.679 34.615 0.00 0.00 45.00 2.44
2445 3099 6.956202 TGGGGAACGTAGTAATTTCAAAAA 57.044 33.333 0.00 0.00 45.00 1.94
2464 3118 3.896648 AAAATTCCTACGCACACACAG 57.103 42.857 0.00 0.00 0.00 3.66
2465 3119 1.808411 AATTCCTACGCACACACAGG 58.192 50.000 0.00 0.00 0.00 4.00
2466 3120 0.973632 ATTCCTACGCACACACAGGA 59.026 50.000 0.00 0.00 35.38 3.86
2467 3121 0.973632 TTCCTACGCACACACAGGAT 59.026 50.000 0.00 0.00 37.06 3.24
2468 3122 0.530744 TCCTACGCACACACAGGATC 59.469 55.000 0.00 0.00 32.20 3.36
2469 3123 0.246360 CCTACGCACACACAGGATCA 59.754 55.000 0.00 0.00 0.00 2.92
2470 3124 1.134699 CCTACGCACACACAGGATCAT 60.135 52.381 0.00 0.00 0.00 2.45
2471 3125 1.929169 CTACGCACACACAGGATCATG 59.071 52.381 5.68 5.68 0.00 3.07
2472 3126 0.674581 ACGCACACACAGGATCATGG 60.675 55.000 12.66 3.43 0.00 3.66
2473 3127 0.674581 CGCACACACAGGATCATGGT 60.675 55.000 12.66 4.08 0.00 3.55
2474 3128 0.806868 GCACACACAGGATCATGGTG 59.193 55.000 20.27 20.27 38.47 4.17
2475 3129 1.611410 GCACACACAGGATCATGGTGA 60.611 52.381 25.47 0.00 36.42 4.02
2476 3130 2.942752 GCACACACAGGATCATGGTGAT 60.943 50.000 25.47 13.21 40.34 3.06
2477 3131 2.681344 CACACACAGGATCATGGTGATG 59.319 50.000 25.47 18.22 37.20 3.07
2478 3132 2.306805 ACACACAGGATCATGGTGATGT 59.693 45.455 25.47 13.56 37.20 3.06
2479 3133 3.519107 ACACACAGGATCATGGTGATGTA 59.481 43.478 25.47 0.00 37.20 2.29
2480 3134 4.164796 ACACACAGGATCATGGTGATGTAT 59.835 41.667 25.47 5.20 37.20 2.29
2481 3135 5.366477 ACACACAGGATCATGGTGATGTATA 59.634 40.000 25.47 0.00 37.20 1.47
2482 3136 5.930569 CACACAGGATCATGGTGATGTATAG 59.069 44.000 18.31 0.00 37.20 1.31
2483 3137 4.934001 CACAGGATCATGGTGATGTATAGC 59.066 45.833 12.66 0.00 37.20 2.97
2484 3138 4.594491 ACAGGATCATGGTGATGTATAGCA 59.406 41.667 12.66 0.00 37.20 3.49
2485 3139 5.072193 ACAGGATCATGGTGATGTATAGCAA 59.928 40.000 12.66 0.00 37.20 3.91
2486 3140 5.410746 CAGGATCATGGTGATGTATAGCAAC 59.589 44.000 0.00 0.00 37.20 4.17
2487 3141 4.389992 GGATCATGGTGATGTATAGCAACG 59.610 45.833 0.00 0.00 37.20 4.10
2488 3142 4.664150 TCATGGTGATGTATAGCAACGA 57.336 40.909 0.00 0.00 30.94 3.85
2489 3143 4.620982 TCATGGTGATGTATAGCAACGAG 58.379 43.478 0.00 0.00 30.94 4.18
2490 3144 4.340950 TCATGGTGATGTATAGCAACGAGA 59.659 41.667 0.00 0.00 30.94 4.04
2491 3145 4.307443 TGGTGATGTATAGCAACGAGAG 57.693 45.455 0.00 0.00 30.94 3.20
2492 3146 3.068165 TGGTGATGTATAGCAACGAGAGG 59.932 47.826 0.00 0.00 30.94 3.69
2493 3147 3.553096 GGTGATGTATAGCAACGAGAGGG 60.553 52.174 0.00 0.00 0.00 4.30
2494 3148 2.628178 TGATGTATAGCAACGAGAGGGG 59.372 50.000 0.00 0.00 0.00 4.79
2495 3149 2.447408 TGTATAGCAACGAGAGGGGA 57.553 50.000 0.00 0.00 0.00 4.81
2496 3150 2.307768 TGTATAGCAACGAGAGGGGAG 58.692 52.381 0.00 0.00 0.00 4.30
2497 3151 2.092049 TGTATAGCAACGAGAGGGGAGA 60.092 50.000 0.00 0.00 0.00 3.71
2498 3152 1.698506 ATAGCAACGAGAGGGGAGAG 58.301 55.000 0.00 0.00 0.00 3.20
2499 3153 0.331954 TAGCAACGAGAGGGGAGAGT 59.668 55.000 0.00 0.00 0.00 3.24
2500 3154 1.216710 GCAACGAGAGGGGAGAGTG 59.783 63.158 0.00 0.00 0.00 3.51
2501 3155 1.536943 GCAACGAGAGGGGAGAGTGT 61.537 60.000 0.00 0.00 0.00 3.55
2502 3156 0.244994 CAACGAGAGGGGAGAGTGTG 59.755 60.000 0.00 0.00 0.00 3.82
2503 3157 0.178958 AACGAGAGGGGAGAGTGTGT 60.179 55.000 0.00 0.00 0.00 3.72
2504 3158 0.609681 ACGAGAGGGGAGAGTGTGTC 60.610 60.000 0.00 0.00 0.00 3.67
2505 3159 1.316706 CGAGAGGGGAGAGTGTGTCC 61.317 65.000 0.00 0.00 0.00 4.02
2506 3160 0.251832 GAGAGGGGAGAGTGTGTCCA 60.252 60.000 0.00 0.00 35.57 4.02
2507 3161 0.543174 AGAGGGGAGAGTGTGTCCAC 60.543 60.000 0.00 0.00 42.17 4.02
2508 3162 1.878656 GAGGGGAGAGTGTGTCCACG 61.879 65.000 0.00 0.00 46.56 4.94
2509 3163 2.207924 GGGGAGAGTGTGTCCACGT 61.208 63.158 0.00 0.00 46.56 4.49
2510 3164 0.896940 GGGGAGAGTGTGTCCACGTA 60.897 60.000 0.00 0.00 46.56 3.57
2511 3165 0.243095 GGGAGAGTGTGTCCACGTAC 59.757 60.000 0.00 0.00 46.56 3.67
2512 3166 0.243095 GGAGAGTGTGTCCACGTACC 59.757 60.000 0.00 0.00 46.56 3.34
2513 3167 0.243095 GAGAGTGTGTCCACGTACCC 59.757 60.000 0.00 0.00 46.56 3.69
2514 3168 0.178970 AGAGTGTGTCCACGTACCCT 60.179 55.000 0.00 0.00 46.56 4.34
2515 3169 0.243095 GAGTGTGTCCACGTACCCTC 59.757 60.000 0.00 0.00 46.56 4.30
2516 3170 1.080974 GTGTGTCCACGTACCCTCG 60.081 63.158 0.00 0.00 0.00 4.63
2517 3171 1.529010 TGTGTCCACGTACCCTCGT 60.529 57.895 0.00 0.00 45.10 4.18
2518 3172 0.250684 TGTGTCCACGTACCCTCGTA 60.251 55.000 0.00 0.00 42.27 3.43
2519 3173 0.449388 GTGTCCACGTACCCTCGTAG 59.551 60.000 0.00 0.00 42.27 3.51
2520 3174 0.324614 TGTCCACGTACCCTCGTAGA 59.675 55.000 0.00 0.00 42.27 2.59
2521 3175 0.729690 GTCCACGTACCCTCGTAGAC 59.270 60.000 0.00 2.79 42.50 2.59
2522 3176 0.392998 TCCACGTACCCTCGTAGACC 60.393 60.000 0.00 0.00 42.27 3.85
2523 3177 1.709147 CCACGTACCCTCGTAGACCG 61.709 65.000 0.00 0.00 42.27 4.79
2524 3178 0.740868 CACGTACCCTCGTAGACCGA 60.741 60.000 0.00 0.00 45.00 4.69
2525 3179 0.036388 ACGTACCCTCGTAGACCGAA 60.036 55.000 0.00 0.00 46.75 4.30
2526 3180 1.086696 CGTACCCTCGTAGACCGAAA 58.913 55.000 0.00 0.00 46.75 3.46
2527 3181 1.063174 CGTACCCTCGTAGACCGAAAG 59.937 57.143 0.00 0.00 46.75 2.62
2528 3182 1.098050 TACCCTCGTAGACCGAAAGC 58.902 55.000 0.00 0.00 46.75 3.51
2529 3183 1.226603 CCCTCGTAGACCGAAAGCG 60.227 63.158 0.00 0.00 46.75 4.68
2550 3204 2.663852 GCGTTAGCACACCACGGT 60.664 61.111 0.00 0.00 44.35 4.83
2551 3205 2.248835 GCGTTAGCACACCACGGTT 61.249 57.895 0.00 0.00 44.35 4.44
2552 3206 1.567537 CGTTAGCACACCACGGTTG 59.432 57.895 0.00 0.00 0.00 3.77
2553 3207 0.876777 CGTTAGCACACCACGGTTGA 60.877 55.000 0.00 0.00 0.00 3.18
2554 3208 1.519408 GTTAGCACACCACGGTTGAT 58.481 50.000 0.00 0.00 0.00 2.57
2555 3209 1.196808 GTTAGCACACCACGGTTGATG 59.803 52.381 0.00 0.00 0.00 3.07
2556 3210 0.394938 TAGCACACCACGGTTGATGT 59.605 50.000 0.00 0.00 0.00 3.06
2557 3211 0.394938 AGCACACCACGGTTGATGTA 59.605 50.000 0.00 0.00 0.00 2.29
2558 3212 0.796312 GCACACCACGGTTGATGTAG 59.204 55.000 0.00 0.00 0.00 2.74
2559 3213 1.876416 GCACACCACGGTTGATGTAGT 60.876 52.381 0.00 0.00 0.00 2.73
2560 3214 2.066262 CACACCACGGTTGATGTAGTC 58.934 52.381 0.00 0.00 0.00 2.59
2561 3215 1.336517 ACACCACGGTTGATGTAGTCG 60.337 52.381 0.00 0.00 0.00 4.18
2562 3216 0.963962 ACCACGGTTGATGTAGTCGT 59.036 50.000 0.00 0.00 34.19 4.34
2564 3218 0.713883 CACGGTTGATGTAGTCGTGC 59.286 55.000 0.00 0.00 43.18 5.34
2565 3219 0.731514 ACGGTTGATGTAGTCGTGCG 60.732 55.000 0.00 0.00 32.60 5.34
2566 3220 0.731514 CGGTTGATGTAGTCGTGCGT 60.732 55.000 0.00 0.00 0.00 5.24
2567 3221 0.989890 GGTTGATGTAGTCGTGCGTC 59.010 55.000 0.00 0.00 0.00 5.19
2568 3222 1.402456 GGTTGATGTAGTCGTGCGTCT 60.402 52.381 0.00 0.00 0.00 4.18
2569 3223 2.325761 GTTGATGTAGTCGTGCGTCTT 58.674 47.619 0.00 0.00 0.00 3.01
2570 3224 2.257974 TGATGTAGTCGTGCGTCTTC 57.742 50.000 0.00 0.00 0.00 2.87
2571 3225 1.538075 TGATGTAGTCGTGCGTCTTCA 59.462 47.619 0.00 0.00 0.00 3.02
2572 3226 1.912110 GATGTAGTCGTGCGTCTTCAC 59.088 52.381 0.00 0.00 0.00 3.18
2582 3236 4.379221 GTCTTCACGATCCGACCG 57.621 61.111 0.00 0.00 0.00 4.79
2583 3237 1.798735 GTCTTCACGATCCGACCGA 59.201 57.895 0.00 0.00 0.00 4.69
2584 3238 0.381089 GTCTTCACGATCCGACCGAT 59.619 55.000 0.00 0.00 0.00 4.18
2585 3239 0.661552 TCTTCACGATCCGACCGATC 59.338 55.000 0.00 0.00 43.58 3.69
2586 3240 0.317938 CTTCACGATCCGACCGATCC 60.318 60.000 0.00 0.00 44.07 3.36
2587 3241 1.033202 TTCACGATCCGACCGATCCA 61.033 55.000 0.00 0.00 44.07 3.41
2588 3242 1.033202 TCACGATCCGACCGATCCAA 61.033 55.000 0.00 0.00 44.07 3.53
2589 3243 0.595053 CACGATCCGACCGATCCAAG 60.595 60.000 0.00 0.00 44.07 3.61
2590 3244 1.035932 ACGATCCGACCGATCCAAGT 61.036 55.000 0.00 0.00 44.07 3.16
2591 3245 0.949397 CGATCCGACCGATCCAAGTA 59.051 55.000 0.00 0.00 44.07 2.24
2592 3246 1.334779 CGATCCGACCGATCCAAGTAC 60.335 57.143 0.00 0.00 44.07 2.73
2593 3247 1.000496 GATCCGACCGATCCAAGTACC 60.000 57.143 0.00 0.00 41.51 3.34
2594 3248 1.065273 CCGACCGATCCAAGTACCG 59.935 63.158 0.00 0.00 0.00 4.02
2595 3249 1.378882 CCGACCGATCCAAGTACCGA 61.379 60.000 0.00 0.00 0.00 4.69
2596 3250 0.452987 CGACCGATCCAAGTACCGAA 59.547 55.000 0.00 0.00 0.00 4.30
2597 3251 1.796617 CGACCGATCCAAGTACCGAAC 60.797 57.143 0.00 0.00 0.00 3.95
2598 3252 0.171903 ACCGATCCAAGTACCGAACG 59.828 55.000 0.00 0.00 0.00 3.95
2599 3253 1.143969 CCGATCCAAGTACCGAACGC 61.144 60.000 0.00 0.00 0.00 4.84
2600 3254 0.457166 CGATCCAAGTACCGAACGCA 60.457 55.000 0.00 0.00 0.00 5.24
2601 3255 0.997196 GATCCAAGTACCGAACGCAC 59.003 55.000 0.00 0.00 0.00 5.34
2602 3256 0.734942 ATCCAAGTACCGAACGCACG 60.735 55.000 0.00 0.00 0.00 5.34
2619 3273 2.435059 GGCACCTCCGAGTTCAGC 60.435 66.667 0.00 0.00 0.00 4.26
2620 3274 2.343758 GCACCTCCGAGTTCAGCA 59.656 61.111 0.00 0.00 0.00 4.41
2621 3275 2.029844 GCACCTCCGAGTTCAGCAC 61.030 63.158 0.00 0.00 0.00 4.40
2622 3276 1.367471 CACCTCCGAGTTCAGCACA 59.633 57.895 0.00 0.00 0.00 4.57
2623 3277 0.946221 CACCTCCGAGTTCAGCACAC 60.946 60.000 0.00 0.00 0.00 3.82
2624 3278 1.734477 CCTCCGAGTTCAGCACACG 60.734 63.158 0.00 0.00 39.03 4.49
2625 3279 1.007271 CTCCGAGTTCAGCACACGT 60.007 57.895 0.00 0.00 37.75 4.49
2626 3280 0.597637 CTCCGAGTTCAGCACACGTT 60.598 55.000 0.00 0.00 37.75 3.99
2627 3281 0.596600 TCCGAGTTCAGCACACGTTC 60.597 55.000 0.00 0.00 37.75 3.95
2628 3282 0.874175 CCGAGTTCAGCACACGTTCA 60.874 55.000 0.00 0.00 37.75 3.18
2629 3283 0.504384 CGAGTTCAGCACACGTTCAG 59.496 55.000 0.00 0.00 35.01 3.02
2630 3284 0.233332 GAGTTCAGCACACGTTCAGC 59.767 55.000 0.00 0.00 0.00 4.26
2631 3285 0.179073 AGTTCAGCACACGTTCAGCT 60.179 50.000 0.64 0.64 39.63 4.24
2632 3286 0.233332 GTTCAGCACACGTTCAGCTC 59.767 55.000 3.38 0.00 36.26 4.09
2633 3287 1.215014 TTCAGCACACGTTCAGCTCG 61.215 55.000 3.38 0.00 36.26 5.03
2634 3288 1.661509 CAGCACACGTTCAGCTCGA 60.662 57.895 3.38 0.00 36.26 4.04
2635 3289 1.010935 CAGCACACGTTCAGCTCGAT 61.011 55.000 3.38 0.00 36.26 3.59
2636 3290 0.734253 AGCACACGTTCAGCTCGATC 60.734 55.000 0.00 0.00 32.05 3.69
2637 3291 1.983907 CACACGTTCAGCTCGATCG 59.016 57.895 9.36 9.36 41.61 3.69
2638 3292 0.454452 CACACGTTCAGCTCGATCGA 60.454 55.000 18.32 18.32 38.81 3.59
2639 3293 0.452184 ACACGTTCAGCTCGATCGAT 59.548 50.000 19.78 0.94 38.81 3.59
2640 3294 0.842613 CACGTTCAGCTCGATCGATG 59.157 55.000 19.78 15.18 38.81 3.84
2641 3295 0.733150 ACGTTCAGCTCGATCGATGA 59.267 50.000 19.78 17.38 38.81 2.92
2642 3296 1.116436 CGTTCAGCTCGATCGATGAC 58.884 55.000 19.78 11.32 38.81 3.06
2643 3297 1.116436 GTTCAGCTCGATCGATGACG 58.884 55.000 19.78 8.05 41.26 4.35
2644 3298 0.733150 TTCAGCTCGATCGATGACGT 59.267 50.000 19.78 0.00 40.69 4.34
2645 3299 0.305009 TCAGCTCGATCGATGACGTC 59.695 55.000 19.78 9.11 40.69 4.34
2646 3300 0.658829 CAGCTCGATCGATGACGTCC 60.659 60.000 19.78 0.00 40.69 4.79
2647 3301 1.370657 GCTCGATCGATGACGTCCC 60.371 63.158 19.78 3.95 40.69 4.46
2648 3302 1.082692 CTCGATCGATGACGTCCCG 60.083 63.158 19.78 16.31 40.69 5.14
2649 3303 2.726180 CGATCGATGACGTCCCGC 60.726 66.667 10.26 1.03 40.69 6.13
2651 3305 3.177272 GATCGATGACGTCCCGCGA 62.177 63.158 21.09 21.09 44.77 5.87
2652 3306 3.182472 ATCGATGACGTCCCGCGAG 62.182 63.158 22.46 0.00 44.77 5.03
2654 3308 4.194720 GATGACGTCCCGCGAGCT 62.195 66.667 14.12 0.00 44.77 4.09
2655 3309 4.194720 ATGACGTCCCGCGAGCTC 62.195 66.667 14.12 2.73 44.77 4.09
2660 3314 4.632458 GTCCCGCGAGCTCCGATC 62.632 72.222 21.43 10.32 41.76 3.69
2663 3317 4.637489 CCGCGAGCTCCGATCCAG 62.637 72.222 21.43 2.58 41.76 3.86
2665 3319 4.212913 GCGAGCTCCGATCCAGCA 62.213 66.667 8.47 0.00 41.76 4.41
2666 3320 2.496341 CGAGCTCCGATCCAGCAA 59.504 61.111 8.47 0.00 41.76 3.91
2667 3321 1.153568 CGAGCTCCGATCCAGCAAA 60.154 57.895 8.47 0.00 41.76 3.68
2668 3322 1.150567 CGAGCTCCGATCCAGCAAAG 61.151 60.000 8.47 1.66 41.76 2.77
2669 3323 1.435408 GAGCTCCGATCCAGCAAAGC 61.435 60.000 0.87 1.87 39.56 3.51
2670 3324 1.451028 GCTCCGATCCAGCAAAGCT 60.451 57.895 6.46 0.00 40.77 3.74
2671 3325 1.028868 GCTCCGATCCAGCAAAGCTT 61.029 55.000 6.46 0.00 36.40 3.74
2672 3326 1.012841 CTCCGATCCAGCAAAGCTTC 58.987 55.000 0.00 0.00 36.40 3.86
2673 3327 0.740868 TCCGATCCAGCAAAGCTTCG 60.741 55.000 0.00 0.00 36.40 3.79
2674 3328 1.061570 CGATCCAGCAAAGCTTCGC 59.938 57.895 0.00 0.00 36.40 4.70
2675 3329 1.431036 GATCCAGCAAAGCTTCGCC 59.569 57.895 5.58 0.00 36.40 5.54
2676 3330 2.315038 GATCCAGCAAAGCTTCGCCG 62.315 60.000 5.58 0.00 36.40 6.46
2677 3331 4.107051 CCAGCAAAGCTTCGCCGG 62.107 66.667 5.58 0.44 36.40 6.13
2678 3332 3.049674 CAGCAAAGCTTCGCCGGA 61.050 61.111 5.05 0.00 36.40 5.14
2679 3333 2.743928 AGCAAAGCTTCGCCGGAG 60.744 61.111 5.05 0.00 33.89 4.63
2680 3334 2.742372 GCAAAGCTTCGCCGGAGA 60.742 61.111 5.05 3.81 0.00 3.71
2681 3335 2.744768 GCAAAGCTTCGCCGGAGAG 61.745 63.158 5.05 2.60 0.00 3.20
2682 3336 1.374758 CAAAGCTTCGCCGGAGAGT 60.375 57.895 5.05 0.00 0.00 3.24
2683 3337 0.951040 CAAAGCTTCGCCGGAGAGTT 60.951 55.000 5.05 0.00 0.00 3.01
2684 3338 0.250338 AAAGCTTCGCCGGAGAGTTT 60.250 50.000 5.05 6.02 0.00 2.66
2685 3339 0.670854 AAGCTTCGCCGGAGAGTTTC 60.671 55.000 5.05 0.00 0.00 2.78
2686 3340 1.374252 GCTTCGCCGGAGAGTTTCA 60.374 57.895 5.05 0.00 0.00 2.69
2687 3341 0.741221 GCTTCGCCGGAGAGTTTCAT 60.741 55.000 5.05 0.00 0.00 2.57
2688 3342 1.281899 CTTCGCCGGAGAGTTTCATC 58.718 55.000 5.05 0.00 0.00 2.92
2689 3343 0.606096 TTCGCCGGAGAGTTTCATCA 59.394 50.000 5.05 0.00 0.00 3.07
2690 3344 0.173481 TCGCCGGAGAGTTTCATCAG 59.827 55.000 5.05 0.00 0.00 2.90
2691 3345 1.424493 CGCCGGAGAGTTTCATCAGC 61.424 60.000 5.05 0.00 0.00 4.26
2692 3346 0.391661 GCCGGAGAGTTTCATCAGCA 60.392 55.000 5.05 0.00 0.00 4.41
2693 3347 1.363744 CCGGAGAGTTTCATCAGCAC 58.636 55.000 0.00 0.00 0.00 4.40
2694 3348 0.994995 CGGAGAGTTTCATCAGCACG 59.005 55.000 0.00 0.00 0.00 5.34
2695 3349 1.402852 CGGAGAGTTTCATCAGCACGA 60.403 52.381 0.00 0.00 0.00 4.35
2696 3350 1.996191 GGAGAGTTTCATCAGCACGAC 59.004 52.381 0.00 0.00 0.00 4.34
2697 3351 1.651138 GAGAGTTTCATCAGCACGACG 59.349 52.381 0.00 0.00 0.00 5.12
2698 3352 0.716108 GAGTTTCATCAGCACGACGG 59.284 55.000 0.00 0.00 0.00 4.79
2699 3353 1.132640 GTTTCATCAGCACGACGGC 59.867 57.895 0.00 0.00 0.00 5.68
2700 3354 2.379634 TTTCATCAGCACGACGGCG 61.380 57.895 10.39 10.39 44.79 6.46
2714 3368 3.398920 GGCGTGATGACGGTGATG 58.601 61.111 6.88 0.00 46.20 3.07
2715 3369 1.153647 GGCGTGATGACGGTGATGA 60.154 57.895 6.88 0.00 46.20 2.92
2716 3370 0.530650 GGCGTGATGACGGTGATGAT 60.531 55.000 6.88 0.00 46.20 2.45
2717 3371 0.578683 GCGTGATGACGGTGATGATG 59.421 55.000 6.88 0.00 46.20 3.07
2718 3372 1.802508 GCGTGATGACGGTGATGATGA 60.803 52.381 6.88 0.00 46.20 2.92
2719 3373 2.747436 CGTGATGACGGTGATGATGAT 58.253 47.619 0.00 0.00 42.18 2.45
2720 3374 2.473984 CGTGATGACGGTGATGATGATG 59.526 50.000 0.00 0.00 42.18 3.07
2721 3375 2.222678 GTGATGACGGTGATGATGATGC 59.777 50.000 0.00 0.00 0.00 3.91
2722 3376 2.103601 TGATGACGGTGATGATGATGCT 59.896 45.455 0.00 0.00 0.00 3.79
2723 3377 3.321682 TGATGACGGTGATGATGATGCTA 59.678 43.478 0.00 0.00 0.00 3.49
2724 3378 3.097877 TGACGGTGATGATGATGCTAC 57.902 47.619 0.00 0.00 0.00 3.58
2725 3379 2.224042 TGACGGTGATGATGATGCTACC 60.224 50.000 0.00 0.00 0.00 3.18
2726 3380 1.422388 CGGTGATGATGATGCTACCG 58.578 55.000 0.00 0.00 43.93 4.02
2727 3381 2.820059 GGTGATGATGATGCTACCGA 57.180 50.000 0.00 0.00 0.00 4.69
2728 3382 2.408050 GGTGATGATGATGCTACCGAC 58.592 52.381 0.00 0.00 0.00 4.79
2729 3383 2.054363 GTGATGATGATGCTACCGACG 58.946 52.381 0.00 0.00 0.00 5.12
2730 3384 1.063806 GATGATGATGCTACCGACGC 58.936 55.000 0.00 0.00 0.00 5.19
2731 3385 0.389025 ATGATGATGCTACCGACGCA 59.611 50.000 0.00 0.00 42.25 5.24
2732 3386 0.249031 TGATGATGCTACCGACGCAG 60.249 55.000 0.00 0.00 41.22 5.18
2733 3387 0.941463 GATGATGCTACCGACGCAGG 60.941 60.000 0.00 0.00 41.22 4.85
2734 3388 2.279517 GATGCTACCGACGCAGGG 60.280 66.667 1.73 0.00 41.22 4.45
2735 3389 4.530857 ATGCTACCGACGCAGGGC 62.531 66.667 1.73 0.00 41.22 5.19
2737 3391 4.452733 GCTACCGACGCAGGGCTT 62.453 66.667 1.73 0.00 35.02 4.35
2738 3392 2.202756 CTACCGACGCAGGGCTTC 60.203 66.667 1.73 0.00 35.02 3.86
2739 3393 4.124351 TACCGACGCAGGGCTTCG 62.124 66.667 9.73 9.73 47.00 3.79
2752 3406 2.125512 CTTCGCCTAAGCACCGCT 60.126 61.111 0.00 0.00 42.56 5.52
2753 3407 1.141019 CTTCGCCTAAGCACCGCTA 59.859 57.895 0.00 0.00 38.25 4.26
2754 3408 1.146358 CTTCGCCTAAGCACCGCTAC 61.146 60.000 0.00 0.00 38.25 3.58
2755 3409 2.877360 TTCGCCTAAGCACCGCTACG 62.877 60.000 0.00 0.00 38.25 3.51
2756 3410 2.493030 GCCTAAGCACCGCTACGA 59.507 61.111 0.00 0.00 38.25 3.43
2757 3411 1.067582 GCCTAAGCACCGCTACGAT 59.932 57.895 0.00 0.00 38.25 3.73
2758 3412 0.313043 GCCTAAGCACCGCTACGATA 59.687 55.000 0.00 0.00 38.25 2.92
2759 3413 1.067776 GCCTAAGCACCGCTACGATAT 60.068 52.381 0.00 0.00 38.25 1.63
2760 3414 2.596452 CCTAAGCACCGCTACGATATG 58.404 52.381 0.00 0.00 38.25 1.78
2761 3415 2.228103 CCTAAGCACCGCTACGATATGA 59.772 50.000 0.00 0.00 38.25 2.15
2762 3416 3.119459 CCTAAGCACCGCTACGATATGAT 60.119 47.826 0.00 0.00 38.25 2.45
2763 3417 2.638556 AGCACCGCTACGATATGATC 57.361 50.000 0.00 0.00 36.99 2.92
2778 3432 6.227298 GATATGATCGAGGTGGATTATGGT 57.773 41.667 0.00 0.00 0.00 3.55
2779 3433 3.751479 TGATCGAGGTGGATTATGGTG 57.249 47.619 0.00 0.00 0.00 4.17
2780 3434 2.368548 TGATCGAGGTGGATTATGGTGG 59.631 50.000 0.00 0.00 0.00 4.61
2781 3435 2.168458 TCGAGGTGGATTATGGTGGA 57.832 50.000 0.00 0.00 0.00 4.02
2782 3436 2.039418 TCGAGGTGGATTATGGTGGAG 58.961 52.381 0.00 0.00 0.00 3.86
2783 3437 2.039418 CGAGGTGGATTATGGTGGAGA 58.961 52.381 0.00 0.00 0.00 3.71
2784 3438 2.036475 CGAGGTGGATTATGGTGGAGAG 59.964 54.545 0.00 0.00 0.00 3.20
2785 3439 2.370189 GAGGTGGATTATGGTGGAGAGG 59.630 54.545 0.00 0.00 0.00 3.69
2786 3440 1.421646 GGTGGATTATGGTGGAGAGGG 59.578 57.143 0.00 0.00 0.00 4.30
2787 3441 1.421646 GTGGATTATGGTGGAGAGGGG 59.578 57.143 0.00 0.00 0.00 4.79
2788 3442 0.402121 GGATTATGGTGGAGAGGGGC 59.598 60.000 0.00 0.00 0.00 5.80
2789 3443 1.140312 GATTATGGTGGAGAGGGGCA 58.860 55.000 0.00 0.00 0.00 5.36
2790 3444 0.846693 ATTATGGTGGAGAGGGGCAC 59.153 55.000 0.00 0.00 0.00 5.01
2809 3463 3.695606 GCACACGGCTGGGAGAGA 61.696 66.667 0.00 0.00 40.25 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 1.550524 GCTCTTCACCAAAATTCCCCC 59.449 52.381 0.00 0.00 0.00 5.40
156 157 1.751351 CTCTCCGTACCTGCATTCTCA 59.249 52.381 0.00 0.00 0.00 3.27
184 185 1.140589 CTCACTCAGTAGCGGCAGG 59.859 63.158 1.45 0.00 0.00 4.85
189 190 2.010582 GCCTCCCTCACTCAGTAGCG 62.011 65.000 0.00 0.00 0.00 4.26
261 264 2.122636 CCCAAAGCCCCAAACCCA 60.123 61.111 0.00 0.00 0.00 4.51
280 283 2.488891 CCCACACCTCTCCATTTTCACA 60.489 50.000 0.00 0.00 0.00 3.58
355 362 4.444388 GCTGTCGAATTTTCAGGAAAAACC 59.556 41.667 10.86 5.63 42.71 3.27
356 363 4.444388 GGCTGTCGAATTTTCAGGAAAAAC 59.556 41.667 10.86 5.87 42.71 2.43
632 818 2.125512 CCAGGCGTCGAGGAAAGG 60.126 66.667 9.75 2.62 0.00 3.11
633 819 1.446272 GTCCAGGCGTCGAGGAAAG 60.446 63.158 9.75 0.00 32.30 2.62
634 820 1.874345 GAGTCCAGGCGTCGAGGAAA 61.874 60.000 9.75 0.00 32.30 3.13
635 821 2.282958 AGTCCAGGCGTCGAGGAA 60.283 61.111 9.75 0.00 32.30 3.36
636 822 2.750637 GAGTCCAGGCGTCGAGGA 60.751 66.667 9.75 0.00 0.00 3.71
637 823 4.180946 CGAGTCCAGGCGTCGAGG 62.181 72.222 0.00 0.00 35.70 4.63
638 824 3.125573 TCGAGTCCAGGCGTCGAG 61.126 66.667 8.52 0.00 37.79 4.04
639 825 3.429141 GTCGAGTCCAGGCGTCGA 61.429 66.667 8.52 8.52 40.29 4.20
648 834 4.176851 GGCGTCTCCGTCGAGTCC 62.177 72.222 0.00 0.00 37.40 3.85
649 835 3.384014 CTGGCGTCTCCGTCGAGTC 62.384 68.421 0.00 0.00 43.03 3.36
650 836 3.432588 CTGGCGTCTCCGTCGAGT 61.433 66.667 0.00 0.00 43.03 4.18
666 852 2.623915 CGTCGTCCGGTGAGGTTCT 61.624 63.158 0.00 0.00 41.99 3.01
720 906 2.138453 AAAAGTCCTCGCCTTCCCCC 62.138 60.000 0.00 0.00 0.00 5.40
783 969 0.678048 AACCCATGGAAGCGCTCTTC 60.678 55.000 15.22 5.21 46.15 2.87
835 1021 1.449601 CGCCCACACATCCTACCAC 60.450 63.158 0.00 0.00 0.00 4.16
859 1045 3.881019 TTCCCTGGCGTCGTCTCCT 62.881 63.158 0.00 0.00 0.00 3.69
860 1046 3.358076 CTTCCCTGGCGTCGTCTCC 62.358 68.421 0.00 0.00 0.00 3.71
861 1047 2.182030 CTTCCCTGGCGTCGTCTC 59.818 66.667 0.00 0.00 0.00 3.36
862 1048 2.282958 TCTTCCCTGGCGTCGTCT 60.283 61.111 0.00 0.00 0.00 4.18
905 1123 1.821216 ACAAACACTTATCCGGGCTG 58.179 50.000 0.00 0.00 0.00 4.85
906 1124 2.570302 ACTACAAACACTTATCCGGGCT 59.430 45.455 0.00 0.00 0.00 5.19
907 1125 2.981898 ACTACAAACACTTATCCGGGC 58.018 47.619 0.00 0.00 0.00 6.13
908 1126 5.909477 TGATACTACAAACACTTATCCGGG 58.091 41.667 0.00 0.00 0.00 5.73
922 1152 2.688446 CCGGACTCAGCTTGATACTACA 59.312 50.000 0.00 0.00 0.00 2.74
924 1154 2.307768 CCCGGACTCAGCTTGATACTA 58.692 52.381 0.73 0.00 0.00 1.82
925 1155 1.115467 CCCGGACTCAGCTTGATACT 58.885 55.000 0.73 0.00 0.00 2.12
929 1335 1.533033 TGACCCGGACTCAGCTTGA 60.533 57.895 0.73 0.00 0.00 3.02
1063 1481 1.437986 GCTCGTATCGTGCCCTCTT 59.562 57.895 5.14 0.00 39.88 2.85
1159 1577 0.749049 CTCATCTGTCTCGGGCATCA 59.251 55.000 0.00 0.00 0.00 3.07
1205 1623 4.662961 GCCTTGCCAAACGCCACC 62.663 66.667 0.00 0.00 36.24 4.61
1330 1748 1.040339 AACCCTGGCAAAACGCTTCA 61.040 50.000 0.00 0.00 41.91 3.02
1533 1955 6.753107 ACATTAAAAGATGAGTTAACCGGG 57.247 37.500 6.32 0.00 0.00 5.73
1816 2240 0.106719 GCTGATCCGGGGAATCCAAA 60.107 55.000 0.00 0.00 34.36 3.28
2060 2707 2.083774 GTCATGCCGAGGTTCAAATCA 58.916 47.619 0.00 0.00 0.00 2.57
2118 2765 6.027025 ACCCTCAGTCAATCTACCATACTA 57.973 41.667 0.00 0.00 0.00 1.82
2122 2769 6.844388 TGTTATACCCTCAGTCAATCTACCAT 59.156 38.462 0.00 0.00 0.00 3.55
2134 2781 9.090103 TCTAGATACCAATTGTTATACCCTCAG 57.910 37.037 4.43 0.00 0.00 3.35
2142 2789 7.071196 TGACTGGCTCTAGATACCAATTGTTAT 59.929 37.037 13.93 0.00 31.81 1.89
2262 2911 7.674120 ACCTAGTAGAATTCGGTTTTACTTGT 58.326 34.615 8.97 5.67 38.35 3.16
2273 2922 1.000496 GCCCGGACCTAGTAGAATTCG 60.000 57.143 0.73 0.00 0.00 3.34
2303 2952 3.450578 TGTGAACTAACTTGTGGTCGAC 58.549 45.455 7.13 7.13 0.00 4.20
2389 3043 3.740397 CCGTGCTACCGTCCGTCA 61.740 66.667 0.00 0.00 0.00 4.35
2419 3073 4.970711 TGAAATTACTACGTTCCCCAACA 58.029 39.130 0.00 0.00 32.14 3.33
2420 3074 5.945466 TTGAAATTACTACGTTCCCCAAC 57.055 39.130 0.00 0.00 0.00 3.77
2421 3075 6.956202 TTTTGAAATTACTACGTTCCCCAA 57.044 33.333 0.00 0.00 0.00 4.12
2422 3076 6.956202 TTTTTGAAATTACTACGTTCCCCA 57.044 33.333 0.00 0.00 0.00 4.96
2443 3097 3.004315 CCTGTGTGTGCGTAGGAATTTTT 59.996 43.478 0.00 0.00 31.91 1.94
2444 3098 2.552315 CCTGTGTGTGCGTAGGAATTTT 59.448 45.455 0.00 0.00 31.91 1.82
2445 3099 2.151202 CCTGTGTGTGCGTAGGAATTT 58.849 47.619 0.00 0.00 31.91 1.82
2446 3100 1.346395 TCCTGTGTGTGCGTAGGAATT 59.654 47.619 0.00 0.00 36.44 2.17
2447 3101 0.973632 TCCTGTGTGTGCGTAGGAAT 59.026 50.000 0.00 0.00 36.44 3.01
2448 3102 0.973632 ATCCTGTGTGTGCGTAGGAA 59.026 50.000 0.00 0.00 42.20 3.36
2449 3103 0.530744 GATCCTGTGTGTGCGTAGGA 59.469 55.000 0.00 0.00 43.01 2.94
2450 3104 0.246360 TGATCCTGTGTGTGCGTAGG 59.754 55.000 0.00 0.00 0.00 3.18
2451 3105 1.929169 CATGATCCTGTGTGTGCGTAG 59.071 52.381 0.00 0.00 0.00 3.51
2452 3106 1.405391 CCATGATCCTGTGTGTGCGTA 60.405 52.381 0.00 0.00 0.00 4.42
2453 3107 0.674581 CCATGATCCTGTGTGTGCGT 60.675 55.000 0.00 0.00 0.00 5.24
2454 3108 0.674581 ACCATGATCCTGTGTGTGCG 60.675 55.000 0.00 0.00 0.00 5.34
2455 3109 0.806868 CACCATGATCCTGTGTGTGC 59.193 55.000 0.00 0.00 0.00 4.57
2456 3110 2.477845 TCACCATGATCCTGTGTGTG 57.522 50.000 14.49 8.57 0.00 3.82
2457 3111 2.306805 ACATCACCATGATCCTGTGTGT 59.693 45.455 14.49 11.05 34.28 3.72
2458 3112 2.995283 ACATCACCATGATCCTGTGTG 58.005 47.619 0.00 10.98 34.28 3.82
2459 3113 5.512060 GCTATACATCACCATGATCCTGTGT 60.512 44.000 0.00 2.87 34.28 3.72
2460 3114 4.934001 GCTATACATCACCATGATCCTGTG 59.066 45.833 0.00 0.00 34.28 3.66
2461 3115 4.594491 TGCTATACATCACCATGATCCTGT 59.406 41.667 0.00 0.00 34.28 4.00
2462 3116 5.156608 TGCTATACATCACCATGATCCTG 57.843 43.478 0.00 0.00 34.28 3.86
2463 3117 5.555017 GTTGCTATACATCACCATGATCCT 58.445 41.667 0.00 0.00 34.28 3.24
2464 3118 4.389992 CGTTGCTATACATCACCATGATCC 59.610 45.833 0.00 0.00 34.28 3.36
2465 3119 5.230182 TCGTTGCTATACATCACCATGATC 58.770 41.667 0.00 0.00 34.28 2.92
2466 3120 5.011023 TCTCGTTGCTATACATCACCATGAT 59.989 40.000 0.00 0.00 37.65 2.45
2467 3121 4.340950 TCTCGTTGCTATACATCACCATGA 59.659 41.667 0.00 0.00 33.72 3.07
2468 3122 4.620982 TCTCGTTGCTATACATCACCATG 58.379 43.478 0.00 0.00 35.92 3.66
2469 3123 4.262207 CCTCTCGTTGCTATACATCACCAT 60.262 45.833 0.00 0.00 0.00 3.55
2470 3124 3.068165 CCTCTCGTTGCTATACATCACCA 59.932 47.826 0.00 0.00 0.00 4.17
2471 3125 3.553096 CCCTCTCGTTGCTATACATCACC 60.553 52.174 0.00 0.00 0.00 4.02
2472 3126 3.553096 CCCCTCTCGTTGCTATACATCAC 60.553 52.174 0.00 0.00 0.00 3.06
2473 3127 2.628178 CCCCTCTCGTTGCTATACATCA 59.372 50.000 0.00 0.00 0.00 3.07
2474 3128 2.891580 TCCCCTCTCGTTGCTATACATC 59.108 50.000 0.00 0.00 0.00 3.06
2475 3129 2.894126 CTCCCCTCTCGTTGCTATACAT 59.106 50.000 0.00 0.00 0.00 2.29
2476 3130 2.092049 TCTCCCCTCTCGTTGCTATACA 60.092 50.000 0.00 0.00 0.00 2.29
2477 3131 2.554893 CTCTCCCCTCTCGTTGCTATAC 59.445 54.545 0.00 0.00 0.00 1.47
2478 3132 2.175069 ACTCTCCCCTCTCGTTGCTATA 59.825 50.000 0.00 0.00 0.00 1.31
2479 3133 1.063567 ACTCTCCCCTCTCGTTGCTAT 60.064 52.381 0.00 0.00 0.00 2.97
2480 3134 0.331954 ACTCTCCCCTCTCGTTGCTA 59.668 55.000 0.00 0.00 0.00 3.49
2481 3135 1.077625 ACTCTCCCCTCTCGTTGCT 59.922 57.895 0.00 0.00 0.00 3.91
2482 3136 1.216710 CACTCTCCCCTCTCGTTGC 59.783 63.158 0.00 0.00 0.00 4.17
2483 3137 0.244994 CACACTCTCCCCTCTCGTTG 59.755 60.000 0.00 0.00 0.00 4.10
2484 3138 0.178958 ACACACTCTCCCCTCTCGTT 60.179 55.000 0.00 0.00 0.00 3.85
2485 3139 0.609681 GACACACTCTCCCCTCTCGT 60.610 60.000 0.00 0.00 0.00 4.18
2486 3140 1.316706 GGACACACTCTCCCCTCTCG 61.317 65.000 0.00 0.00 0.00 4.04
2487 3141 0.251832 TGGACACACTCTCCCCTCTC 60.252 60.000 0.00 0.00 0.00 3.20
2488 3142 0.543174 GTGGACACACTCTCCCCTCT 60.543 60.000 0.00 0.00 44.29 3.69
2489 3143 1.878656 CGTGGACACACTCTCCCCTC 61.879 65.000 3.12 0.00 45.50 4.30
2490 3144 1.908793 CGTGGACACACTCTCCCCT 60.909 63.158 3.12 0.00 45.50 4.79
2491 3145 0.896940 TACGTGGACACACTCTCCCC 60.897 60.000 0.00 0.00 45.50 4.81
2492 3146 0.243095 GTACGTGGACACACTCTCCC 59.757 60.000 0.00 0.00 45.50 4.30
2493 3147 0.243095 GGTACGTGGACACACTCTCC 59.757 60.000 0.00 0.00 45.50 3.71
2494 3148 0.243095 GGGTACGTGGACACACTCTC 59.757 60.000 0.00 0.00 45.50 3.20
2495 3149 0.178970 AGGGTACGTGGACACACTCT 60.179 55.000 0.00 0.00 45.50 3.24
2496 3150 0.243095 GAGGGTACGTGGACACACTC 59.757 60.000 2.84 2.84 45.50 3.51
2497 3151 1.521450 CGAGGGTACGTGGACACACT 61.521 60.000 0.00 0.00 45.50 3.55
2498 3152 1.080974 CGAGGGTACGTGGACACAC 60.081 63.158 0.00 0.00 44.23 3.82
2499 3153 0.250684 TACGAGGGTACGTGGACACA 60.251 55.000 0.00 0.00 46.02 3.72
2500 3154 0.449388 CTACGAGGGTACGTGGACAC 59.551 60.000 0.00 0.00 44.98 3.67
2501 3155 0.324614 TCTACGAGGGTACGTGGACA 59.675 55.000 0.00 0.00 45.53 4.02
2502 3156 3.159298 TCTACGAGGGTACGTGGAC 57.841 57.895 0.00 0.00 45.53 4.02
2504 3158 2.101700 GGTCTACGAGGGTACGTGG 58.898 63.158 0.00 0.00 46.02 4.94
2522 3176 1.058903 GCTAACGCTTCCGCTTTCG 59.941 57.895 0.00 0.00 38.22 3.46
2523 3177 0.179222 GTGCTAACGCTTCCGCTTTC 60.179 55.000 0.00 0.00 38.22 2.62
2524 3178 0.882927 TGTGCTAACGCTTCCGCTTT 60.883 50.000 0.00 0.00 38.22 3.51
2525 3179 1.301401 TGTGCTAACGCTTCCGCTT 60.301 52.632 0.00 0.00 38.22 4.68
2526 3180 2.027625 GTGTGCTAACGCTTCCGCT 61.028 57.895 0.00 0.00 38.22 5.52
2527 3181 2.474712 GTGTGCTAACGCTTCCGC 59.525 61.111 0.00 0.00 38.22 5.54
2528 3182 1.666553 TGGTGTGCTAACGCTTCCG 60.667 57.895 0.00 0.00 36.99 4.30
2529 3183 1.866925 GTGGTGTGCTAACGCTTCC 59.133 57.895 0.00 0.00 36.99 3.46
2530 3184 1.491563 CGTGGTGTGCTAACGCTTC 59.508 57.895 0.00 0.00 36.99 3.86
2531 3185 1.959226 CCGTGGTGTGCTAACGCTT 60.959 57.895 0.00 0.00 36.99 4.68
2532 3186 2.357034 CCGTGGTGTGCTAACGCT 60.357 61.111 0.00 0.00 36.99 5.07
2533 3187 2.248835 AACCGTGGTGTGCTAACGC 61.249 57.895 0.00 0.00 36.02 4.84
2534 3188 0.876777 TCAACCGTGGTGTGCTAACG 60.877 55.000 0.00 0.00 37.07 3.18
2535 3189 1.196808 CATCAACCGTGGTGTGCTAAC 59.803 52.381 0.00 0.00 30.59 2.34
2536 3190 1.518325 CATCAACCGTGGTGTGCTAA 58.482 50.000 0.00 0.00 30.59 3.09
2537 3191 3.225272 CATCAACCGTGGTGTGCTA 57.775 52.632 0.00 0.00 30.59 3.49
2538 3192 4.063529 CATCAACCGTGGTGTGCT 57.936 55.556 0.00 0.00 30.59 4.40
2542 3196 1.336517 ACGACTACATCAACCGTGGTG 60.337 52.381 0.00 0.00 42.05 4.17
2543 3197 0.963962 ACGACTACATCAACCGTGGT 59.036 50.000 0.00 0.00 31.85 4.16
2544 3198 1.346365 CACGACTACATCAACCGTGG 58.654 55.000 0.00 0.00 44.51 4.94
2546 3200 0.731514 CGCACGACTACATCAACCGT 60.732 55.000 0.00 0.00 0.00 4.83
2547 3201 0.731514 ACGCACGACTACATCAACCG 60.732 55.000 0.00 0.00 0.00 4.44
2548 3202 0.989890 GACGCACGACTACATCAACC 59.010 55.000 0.00 0.00 0.00 3.77
2549 3203 1.978542 AGACGCACGACTACATCAAC 58.021 50.000 0.00 0.00 0.00 3.18
2550 3204 2.030628 TGAAGACGCACGACTACATCAA 60.031 45.455 0.00 0.00 0.00 2.57
2551 3205 1.538075 TGAAGACGCACGACTACATCA 59.462 47.619 0.00 0.00 0.00 3.07
2552 3206 1.912110 GTGAAGACGCACGACTACATC 59.088 52.381 0.00 0.00 0.00 3.06
2553 3207 1.978542 GTGAAGACGCACGACTACAT 58.021 50.000 0.00 0.00 0.00 2.29
2554 3208 3.467043 GTGAAGACGCACGACTACA 57.533 52.632 0.00 0.00 0.00 2.74
2561 3215 1.154093 TCGGATCGTGAAGACGCAC 60.154 57.895 0.00 0.00 45.68 5.34
2562 3216 1.154093 GTCGGATCGTGAAGACGCA 60.154 57.895 0.00 0.00 45.68 5.24
2563 3217 1.872679 GGTCGGATCGTGAAGACGC 60.873 63.158 0.00 0.00 45.68 5.19
2565 3219 0.381089 ATCGGTCGGATCGTGAAGAC 59.619 55.000 10.85 0.00 0.00 3.01
2566 3220 0.661552 GATCGGTCGGATCGTGAAGA 59.338 55.000 10.85 0.00 42.02 2.87
2567 3221 3.165559 GATCGGTCGGATCGTGAAG 57.834 57.895 10.85 0.00 42.02 3.02
2574 3228 1.038280 GGTACTTGGATCGGTCGGAT 58.962 55.000 0.00 0.00 38.35 4.18
2575 3229 1.378882 CGGTACTTGGATCGGTCGGA 61.379 60.000 0.00 0.00 0.00 4.55
2576 3230 1.065273 CGGTACTTGGATCGGTCGG 59.935 63.158 0.00 0.00 0.00 4.79
2577 3231 0.452987 TTCGGTACTTGGATCGGTCG 59.547 55.000 0.00 0.00 0.00 4.79
2578 3232 1.796617 CGTTCGGTACTTGGATCGGTC 60.797 57.143 0.00 0.00 0.00 4.79
2579 3233 0.171903 CGTTCGGTACTTGGATCGGT 59.828 55.000 0.00 0.00 0.00 4.69
2580 3234 1.143969 GCGTTCGGTACTTGGATCGG 61.144 60.000 0.00 0.00 0.00 4.18
2581 3235 0.457166 TGCGTTCGGTACTTGGATCG 60.457 55.000 0.00 1.14 0.00 3.69
2582 3236 0.997196 GTGCGTTCGGTACTTGGATC 59.003 55.000 0.00 0.00 0.00 3.36
2583 3237 0.734942 CGTGCGTTCGGTACTTGGAT 60.735 55.000 0.00 0.00 0.00 3.41
2584 3238 1.372004 CGTGCGTTCGGTACTTGGA 60.372 57.895 0.00 0.00 0.00 3.53
2585 3239 2.377310 CCGTGCGTTCGGTACTTGG 61.377 63.158 11.17 0.00 44.77 3.61
2586 3240 3.152703 CCGTGCGTTCGGTACTTG 58.847 61.111 11.17 0.00 44.77 3.16
2602 3256 2.435059 GCTGAACTCGGAGGTGCC 60.435 66.667 10.23 0.00 0.00 5.01
2603 3257 2.029844 GTGCTGAACTCGGAGGTGC 61.030 63.158 10.23 4.15 0.00 5.01
2604 3258 0.946221 GTGTGCTGAACTCGGAGGTG 60.946 60.000 10.23 0.00 0.00 4.00
2605 3259 1.367840 GTGTGCTGAACTCGGAGGT 59.632 57.895 10.23 1.51 0.00 3.85
2606 3260 1.734477 CGTGTGCTGAACTCGGAGG 60.734 63.158 10.23 0.00 41.05 4.30
2607 3261 3.848142 CGTGTGCTGAACTCGGAG 58.152 61.111 2.83 2.83 41.05 4.63
2611 3265 0.233332 GCTGAACGTGTGCTGAACTC 59.767 55.000 0.00 0.00 0.00 3.01
2612 3266 0.179073 AGCTGAACGTGTGCTGAACT 60.179 50.000 8.99 0.00 35.54 3.01
2613 3267 0.233332 GAGCTGAACGTGTGCTGAAC 59.767 55.000 13.62 0.00 37.16 3.18
2614 3268 1.215014 CGAGCTGAACGTGTGCTGAA 61.215 55.000 13.62 0.00 37.16 3.02
2615 3269 1.661509 CGAGCTGAACGTGTGCTGA 60.662 57.895 13.62 0.00 37.16 4.26
2616 3270 1.010935 ATCGAGCTGAACGTGTGCTG 61.011 55.000 13.62 7.51 37.16 4.41
2617 3271 0.734253 GATCGAGCTGAACGTGTGCT 60.734 55.000 9.46 9.46 40.02 4.40
2618 3272 1.704582 GATCGAGCTGAACGTGTGC 59.295 57.895 0.00 0.00 0.00 4.57
2619 3273 0.454452 TCGATCGAGCTGAACGTGTG 60.454 55.000 15.15 0.00 42.79 3.82
2620 3274 0.452184 ATCGATCGAGCTGAACGTGT 59.548 50.000 23.84 0.00 42.79 4.49
2621 3275 0.842613 CATCGATCGAGCTGAACGTG 59.157 55.000 23.84 10.16 42.79 4.49
2622 3276 0.733150 TCATCGATCGAGCTGAACGT 59.267 50.000 23.84 0.34 42.79 3.99
2623 3277 1.116436 GTCATCGATCGAGCTGAACG 58.884 55.000 23.84 0.00 43.51 3.95
2624 3278 1.116436 CGTCATCGATCGAGCTGAAC 58.884 55.000 23.84 14.86 39.71 3.18
2625 3279 0.733150 ACGTCATCGATCGAGCTGAA 59.267 50.000 23.84 5.53 40.62 3.02
2626 3280 0.305009 GACGTCATCGATCGAGCTGA 59.695 55.000 23.84 19.37 40.62 4.26
2627 3281 0.658829 GGACGTCATCGATCGAGCTG 60.659 60.000 23.84 17.33 40.62 4.24
2628 3282 1.649815 GGACGTCATCGATCGAGCT 59.350 57.895 23.84 4.47 40.62 4.09
2629 3283 1.370657 GGGACGTCATCGATCGAGC 60.371 63.158 23.84 14.33 40.62 5.03
2630 3284 4.924924 GGGACGTCATCGATCGAG 57.075 61.111 23.84 14.92 40.62 4.04
2643 3297 4.632458 GATCGGAGCTCGCGGGAC 62.632 72.222 12.03 1.74 39.05 4.46
2646 3300 4.637489 CTGGATCGGAGCTCGCGG 62.637 72.222 19.88 7.97 39.05 6.46
2648 3302 3.723235 TTGCTGGATCGGAGCTCGC 62.723 63.158 7.83 4.02 37.35 5.03
2649 3303 1.150567 CTTTGCTGGATCGGAGCTCG 61.151 60.000 7.83 3.33 37.35 5.03
2650 3304 1.435408 GCTTTGCTGGATCGGAGCTC 61.435 60.000 4.71 4.71 37.35 4.09
2651 3305 1.451028 GCTTTGCTGGATCGGAGCT 60.451 57.895 14.51 0.00 37.35 4.09
2652 3306 1.028868 AAGCTTTGCTGGATCGGAGC 61.029 55.000 8.14 8.14 39.62 4.70
2653 3307 1.012841 GAAGCTTTGCTGGATCGGAG 58.987 55.000 0.00 0.00 39.62 4.63
2654 3308 0.740868 CGAAGCTTTGCTGGATCGGA 60.741 55.000 0.00 0.00 39.62 4.55
2655 3309 1.717937 CGAAGCTTTGCTGGATCGG 59.282 57.895 0.00 0.00 39.62 4.18
2669 3323 1.281899 GATGAAACTCTCCGGCGAAG 58.718 55.000 9.30 0.00 0.00 3.79
2670 3324 0.606096 TGATGAAACTCTCCGGCGAA 59.394 50.000 9.30 0.00 0.00 4.70
2671 3325 0.173481 CTGATGAAACTCTCCGGCGA 59.827 55.000 9.30 0.00 0.00 5.54
2672 3326 1.424493 GCTGATGAAACTCTCCGGCG 61.424 60.000 0.00 0.00 0.00 6.46
2673 3327 0.391661 TGCTGATGAAACTCTCCGGC 60.392 55.000 0.00 0.00 0.00 6.13
2674 3328 1.363744 GTGCTGATGAAACTCTCCGG 58.636 55.000 0.00 0.00 0.00 5.14
2675 3329 0.994995 CGTGCTGATGAAACTCTCCG 59.005 55.000 0.00 0.00 0.00 4.63
2676 3330 1.996191 GTCGTGCTGATGAAACTCTCC 59.004 52.381 0.00 0.00 0.00 3.71
2677 3331 1.651138 CGTCGTGCTGATGAAACTCTC 59.349 52.381 0.00 0.00 35.48 3.20
2678 3332 1.670087 CCGTCGTGCTGATGAAACTCT 60.670 52.381 0.00 0.00 35.48 3.24
2679 3333 0.716108 CCGTCGTGCTGATGAAACTC 59.284 55.000 0.00 0.00 35.48 3.01
2680 3334 1.291877 GCCGTCGTGCTGATGAAACT 61.292 55.000 0.00 0.00 35.48 2.66
2681 3335 1.132640 GCCGTCGTGCTGATGAAAC 59.867 57.895 0.00 0.00 35.48 2.78
2682 3336 2.379634 CGCCGTCGTGCTGATGAAA 61.380 57.895 4.57 0.00 35.48 2.69
2683 3337 2.809174 CGCCGTCGTGCTGATGAA 60.809 61.111 4.57 0.00 35.48 2.57
2693 3347 4.771356 ACCGTCATCACGCCGTCG 62.771 66.667 0.00 0.00 45.29 5.12
2694 3348 2.884087 ATCACCGTCATCACGCCGTC 62.884 60.000 0.00 0.00 45.29 4.79
2695 3349 3.001902 ATCACCGTCATCACGCCGT 62.002 57.895 0.00 0.00 45.29 5.68
2696 3350 2.202743 ATCACCGTCATCACGCCG 60.203 61.111 0.00 0.00 45.29 6.46
2697 3351 0.530650 ATCATCACCGTCATCACGCC 60.531 55.000 0.00 0.00 45.29 5.68
2698 3352 0.578683 CATCATCACCGTCATCACGC 59.421 55.000 0.00 0.00 45.29 5.34
2699 3353 2.208326 TCATCATCACCGTCATCACG 57.792 50.000 0.00 0.00 46.29 4.35
2700 3354 2.222678 GCATCATCATCACCGTCATCAC 59.777 50.000 0.00 0.00 0.00 3.06
2701 3355 2.103601 AGCATCATCATCACCGTCATCA 59.896 45.455 0.00 0.00 0.00 3.07
2702 3356 2.763933 AGCATCATCATCACCGTCATC 58.236 47.619 0.00 0.00 0.00 2.92
2703 3357 2.924757 AGCATCATCATCACCGTCAT 57.075 45.000 0.00 0.00 0.00 3.06
2704 3358 2.224042 GGTAGCATCATCATCACCGTCA 60.224 50.000 0.00 0.00 0.00 4.35
2705 3359 2.408050 GGTAGCATCATCATCACCGTC 58.592 52.381 0.00 0.00 0.00 4.79
2706 3360 1.269778 CGGTAGCATCATCATCACCGT 60.270 52.381 2.91 0.00 42.93 4.83
2707 3361 1.422388 CGGTAGCATCATCATCACCG 58.578 55.000 0.00 0.00 42.41 4.94
2708 3362 2.408050 GTCGGTAGCATCATCATCACC 58.592 52.381 0.00 0.00 0.00 4.02
2709 3363 2.054363 CGTCGGTAGCATCATCATCAC 58.946 52.381 0.00 0.00 0.00 3.06
2710 3364 1.602920 GCGTCGGTAGCATCATCATCA 60.603 52.381 0.00 0.00 34.19 3.07
2711 3365 1.063806 GCGTCGGTAGCATCATCATC 58.936 55.000 0.00 0.00 34.19 2.92
2712 3366 0.389025 TGCGTCGGTAGCATCATCAT 59.611 50.000 0.00 0.00 40.01 2.45
2713 3367 0.249031 CTGCGTCGGTAGCATCATCA 60.249 55.000 0.00 0.00 44.26 3.07
2714 3368 0.941463 CCTGCGTCGGTAGCATCATC 60.941 60.000 0.00 0.00 44.26 2.92
2715 3369 1.068083 CCTGCGTCGGTAGCATCAT 59.932 57.895 0.00 0.00 44.26 2.45
2716 3370 2.494445 CCTGCGTCGGTAGCATCA 59.506 61.111 0.00 0.00 44.26 3.07
2717 3371 2.279517 CCCTGCGTCGGTAGCATC 60.280 66.667 0.00 0.00 44.26 3.91
2718 3372 4.530857 GCCCTGCGTCGGTAGCAT 62.531 66.667 0.00 0.00 44.26 3.79
2720 3374 4.452733 AAGCCCTGCGTCGGTAGC 62.453 66.667 0.00 0.00 0.00 3.58
2721 3375 2.202756 GAAGCCCTGCGTCGGTAG 60.203 66.667 0.00 0.00 0.00 3.18
2735 3389 1.141019 TAGCGGTGCTTAGGCGAAG 59.859 57.895 2.68 2.68 40.44 3.79
2736 3390 1.153706 GTAGCGGTGCTTAGGCGAA 60.154 57.895 0.00 0.00 40.44 4.70
2737 3391 2.493030 GTAGCGGTGCTTAGGCGA 59.507 61.111 0.00 0.00 40.44 5.54
2738 3392 2.679132 ATCGTAGCGGTGCTTAGGCG 62.679 60.000 0.00 0.00 40.44 5.52
2739 3393 0.313043 TATCGTAGCGGTGCTTAGGC 59.687 55.000 0.00 0.00 40.44 3.93
2740 3394 2.228103 TCATATCGTAGCGGTGCTTAGG 59.772 50.000 0.00 0.00 40.44 2.69
2741 3395 3.554259 TCATATCGTAGCGGTGCTTAG 57.446 47.619 0.00 0.00 40.44 2.18
2742 3396 4.092771 GATCATATCGTAGCGGTGCTTA 57.907 45.455 0.00 0.00 40.44 3.09
2743 3397 2.947852 GATCATATCGTAGCGGTGCTT 58.052 47.619 0.00 0.00 40.44 3.91
2744 3398 2.638556 GATCATATCGTAGCGGTGCT 57.361 50.000 0.00 0.00 43.41 4.40
2755 3409 6.045318 CACCATAATCCACCTCGATCATATC 58.955 44.000 0.00 0.00 0.00 1.63
2756 3410 5.104776 CCACCATAATCCACCTCGATCATAT 60.105 44.000 0.00 0.00 0.00 1.78
2757 3411 4.222810 CCACCATAATCCACCTCGATCATA 59.777 45.833 0.00 0.00 0.00 2.15
2758 3412 3.008375 CCACCATAATCCACCTCGATCAT 59.992 47.826 0.00 0.00 0.00 2.45
2759 3413 2.368548 CCACCATAATCCACCTCGATCA 59.631 50.000 0.00 0.00 0.00 2.92
2760 3414 2.632996 TCCACCATAATCCACCTCGATC 59.367 50.000 0.00 0.00 0.00 3.69
2761 3415 2.634940 CTCCACCATAATCCACCTCGAT 59.365 50.000 0.00 0.00 0.00 3.59
2762 3416 2.039418 CTCCACCATAATCCACCTCGA 58.961 52.381 0.00 0.00 0.00 4.04
2763 3417 2.036475 CTCTCCACCATAATCCACCTCG 59.964 54.545 0.00 0.00 0.00 4.63
2764 3418 2.370189 CCTCTCCACCATAATCCACCTC 59.630 54.545 0.00 0.00 0.00 3.85
2765 3419 2.412591 CCTCTCCACCATAATCCACCT 58.587 52.381 0.00 0.00 0.00 4.00
2766 3420 1.421646 CCCTCTCCACCATAATCCACC 59.578 57.143 0.00 0.00 0.00 4.61
2767 3421 1.421646 CCCCTCTCCACCATAATCCAC 59.578 57.143 0.00 0.00 0.00 4.02
2768 3422 1.819753 CCCCTCTCCACCATAATCCA 58.180 55.000 0.00 0.00 0.00 3.41
2769 3423 0.402121 GCCCCTCTCCACCATAATCC 59.598 60.000 0.00 0.00 0.00 3.01
2770 3424 1.140312 TGCCCCTCTCCACCATAATC 58.860 55.000 0.00 0.00 0.00 1.75
2771 3425 0.846693 GTGCCCCTCTCCACCATAAT 59.153 55.000 0.00 0.00 0.00 1.28
2772 3426 2.307153 GTGCCCCTCTCCACCATAA 58.693 57.895 0.00 0.00 0.00 1.90
2773 3427 4.066614 GTGCCCCTCTCCACCATA 57.933 61.111 0.00 0.00 0.00 2.74
2792 3446 3.695606 TCTCTCCCAGCCGTGTGC 61.696 66.667 0.00 0.00 41.71 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.