Multiple sequence alignment - TraesCS2D01G164300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G164300 chr2D 100.000 2554 0 0 1 2554 109000913 108998360 0.000000e+00 4717
1 TraesCS2D01G164300 chr2D 100.000 452 0 0 2751 3202 108998163 108997712 0.000000e+00 835
2 TraesCS2D01G164300 chr2D 81.250 272 20 9 524 788 109106560 109106313 1.170000e-44 191
3 TraesCS2D01G164300 chr2D 89.000 100 10 1 1 100 109043455 109043357 4.340000e-24 122
4 TraesCS2D01G164300 chr2B 96.714 1765 49 4 438 2196 158642071 158640310 0.000000e+00 2929
5 TraesCS2D01G164300 chr2B 88.206 407 30 7 4 397 158642616 158642215 1.340000e-128 470
6 TraesCS2D01G164300 chr2B 76.809 677 74 40 69 708 158780627 158779997 1.440000e-78 303
7 TraesCS2D01G164300 chr2B 78.571 322 64 3 2752 3070 37711615 37711934 1.160000e-49 207
8 TraesCS2D01G164300 chr2B 89.744 117 11 1 2325 2441 158640079 158639964 7.160000e-32 148
9 TraesCS2D01G164300 chr2A 94.937 948 30 6 1392 2323 104964235 104963290 0.000000e+00 1469
10 TraesCS2D01G164300 chr2A 96.272 456 17 0 941 1396 104969179 104968724 0.000000e+00 749
11 TraesCS2D01G164300 chr2A 94.670 469 21 3 438 906 104969645 104969181 0.000000e+00 725
12 TraesCS2D01G164300 chr2A 85.990 414 33 8 4 397 104970167 104969759 1.370000e-113 420
13 TraesCS2D01G164300 chr2A 79.433 564 61 28 155 714 105032598 105032086 6.570000e-92 348
14 TraesCS2D01G164300 chr2A 86.325 234 26 4 2324 2554 104963236 104963006 1.910000e-62 250
15 TraesCS2D01G164300 chr3B 87.795 254 31 0 2751 3004 123055758 123056011 6.720000e-77 298
16 TraesCS2D01G164300 chr3B 80.065 306 46 8 2751 3053 637024406 637024699 2.500000e-51 213
17 TraesCS2D01G164300 chr7D 80.374 321 60 3 2751 3070 136209642 136209960 1.150000e-59 241
18 TraesCS2D01G164300 chr1D 80.000 320 61 3 2751 3070 470887451 470887767 1.920000e-57 233
19 TraesCS2D01G164300 chr1D 78.025 314 63 4 2753 3064 58863790 58864099 3.260000e-45 193
20 TraesCS2D01G164300 chr5B 80.380 316 53 8 2751 3064 16666800 16666492 6.910000e-57 231
21 TraesCS2D01G164300 chr5D 78.462 325 66 4 2751 3073 510630341 510630019 3.240000e-50 209
22 TraesCS2D01G164300 chr4D 78.462 325 64 5 2751 3073 464400665 464400345 1.160000e-49 207


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G164300 chr2D 108997712 109000913 3201 True 2776.000000 4717 100.000000 1 3202 2 chr2D.!!$R3 3201
1 TraesCS2D01G164300 chr2B 158639964 158642616 2652 True 1182.333333 2929 91.554667 4 2441 3 chr2B.!!$R2 2437
2 TraesCS2D01G164300 chr2B 158779997 158780627 630 True 303.000000 303 76.809000 69 708 1 chr2B.!!$R1 639
3 TraesCS2D01G164300 chr2A 104963006 104964235 1229 True 859.500000 1469 90.631000 1392 2554 2 chr2A.!!$R2 1162
4 TraesCS2D01G164300 chr2A 104968724 104970167 1443 True 631.333333 749 92.310667 4 1396 3 chr2A.!!$R3 1392
5 TraesCS2D01G164300 chr2A 105032086 105032598 512 True 348.000000 348 79.433000 155 714 1 chr2A.!!$R1 559

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
245 267 1.046472 CCCATGAACAGGGCATGCAT 61.046 55.0 21.36 4.13 41.30 3.96 F
1017 1196 0.739813 CCATGGACGAAGACGAACCC 60.740 60.0 5.56 0.00 42.66 4.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1155 1334 0.029267 AGGAGGGGCTGGAGATCATT 60.029 55.0 0.0 0.0 0.0 2.57 R
2853 3197 0.034337 TGTTTCTGTGGCGTAGTCCC 59.966 55.0 0.0 0.0 0.0 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 3.664107 TGTAACAGGATGAGCAACAGAC 58.336 45.455 0.00 0.00 39.69 3.51
67 68 3.423539 ACAGACAGCATGGTGTTACAT 57.576 42.857 29.63 14.53 43.62 2.29
138 139 2.419673 CACGCATACACACACATGGAAT 59.580 45.455 0.00 0.00 0.00 3.01
139 140 2.677836 ACGCATACACACACATGGAATC 59.322 45.455 0.00 0.00 0.00 2.52
140 141 2.285776 CGCATACACACACATGGAATCG 60.286 50.000 0.00 0.00 0.00 3.34
161 181 3.364964 CGACCATAACAGAGCACAAAACC 60.365 47.826 0.00 0.00 0.00 3.27
211 233 4.142469 CCATGACCAAAATTACGGGAAGTC 60.142 45.833 0.00 0.00 0.00 3.01
218 240 5.163923 CCAAAATTACGGGAAGTCGAACTAC 60.164 44.000 0.00 0.00 0.00 2.73
243 265 3.213264 CCCATGAACAGGGCATGC 58.787 61.111 9.90 9.90 41.30 4.06
244 266 1.683025 CCCATGAACAGGGCATGCA 60.683 57.895 21.36 0.00 41.30 3.96
245 267 1.046472 CCCATGAACAGGGCATGCAT 61.046 55.000 21.36 4.13 41.30 3.96
253 280 2.966915 ACAGGGCATGCATATTCCATT 58.033 42.857 21.36 0.00 0.00 3.16
257 284 1.203052 GGCATGCATATTCCATTCCCG 59.797 52.381 21.36 0.00 0.00 5.14
397 432 4.618965 AGATTCTCCGCGAATAAACTACC 58.381 43.478 8.23 0.00 42.31 3.18
399 434 3.431922 TCTCCGCGAATAAACTACCAG 57.568 47.619 8.23 0.00 0.00 4.00
401 436 3.947196 TCTCCGCGAATAAACTACCAGTA 59.053 43.478 8.23 0.00 0.00 2.74
427 581 3.618690 ACTAAAGTAGCTCCAGCAAGG 57.381 47.619 0.48 0.00 45.16 3.61
440 594 4.081030 CAAGGCACTCGCAGCACG 62.081 66.667 0.00 0.00 38.49 5.34
667 840 4.835284 AGATCTGGGGAAGAAGAAGAAC 57.165 45.455 0.00 0.00 38.79 3.01
915 1091 3.067106 CGATTAACAATGGATCCCTCGG 58.933 50.000 9.90 0.00 0.00 4.63
935 1111 2.419713 GGGGGTTGAGTTCGGAATCTAC 60.420 54.545 0.00 0.00 0.00 2.59
936 1112 2.235402 GGGGTTGAGTTCGGAATCTACA 59.765 50.000 7.97 0.00 0.00 2.74
937 1113 3.118371 GGGGTTGAGTTCGGAATCTACAT 60.118 47.826 7.97 0.00 0.00 2.29
984 1163 2.275418 CCTAAACCAGCCCGCCAT 59.725 61.111 0.00 0.00 0.00 4.40
989 1168 1.978455 AAACCAGCCCGCCATATCGA 61.978 55.000 0.00 0.00 0.00 3.59
991 1170 2.740055 CAGCCCGCCATATCGAGC 60.740 66.667 0.00 0.00 33.24 5.03
1017 1196 0.739813 CCATGGACGAAGACGAACCC 60.740 60.000 5.56 0.00 42.66 4.11
1155 1334 1.449070 CTGCAAGAGATGGCGCTCA 60.449 57.895 7.64 3.81 37.37 4.26
1278 1457 0.881600 TCGTCGACGAGAACAGGACA 60.882 55.000 34.97 10.59 44.22 4.02
1433 1615 2.738521 CCGTCTTGGCGGTGACAG 60.739 66.667 5.40 0.00 46.11 3.51
1530 1712 0.742505 CCGGCGAGTACAAGGTGATA 59.257 55.000 9.30 0.00 0.00 2.15
1713 1895 2.658325 CGTGGTGTACTACGTTGCTAAC 59.342 50.000 11.98 0.00 44.21 2.34
2070 2252 4.424566 GCCGGCGGTAGTGACGAA 62.425 66.667 28.82 0.00 0.00 3.85
2196 2386 1.640917 AGGCACCGAGGAGAAAGTTA 58.359 50.000 0.00 0.00 0.00 2.24
2241 2436 5.478679 TGTTTTAAAATGGTGATGGGACGAT 59.521 36.000 3.52 0.00 0.00 3.73
2279 2476 7.977853 GCATCATATTTTTGTCAGGTCATCTTT 59.022 33.333 0.00 0.00 0.00 2.52
2311 2508 7.747155 TTAGTGGATCAATCAACCGTAAAAA 57.253 32.000 0.00 0.00 30.81 1.94
2364 2703 8.528917 TTCAGAAGATGCATTTCAATTTTCAG 57.471 30.769 17.89 6.10 0.00 3.02
2366 2705 8.027189 TCAGAAGATGCATTTCAATTTTCAGAG 58.973 33.333 17.89 4.57 0.00 3.35
2437 2776 7.414429 CGTTGATGTCATTTAGGTGTTGATGAT 60.414 37.037 0.00 0.00 31.85 2.45
2452 2791 8.612619 GGTGTTGATGATAATTAGTGGTGTTAG 58.387 37.037 0.00 0.00 0.00 2.34
2456 2795 9.599866 TTGATGATAATTAGTGGTGTTAGTGAG 57.400 33.333 0.00 0.00 0.00 3.51
2481 2825 9.981460 AGAATGTTTCTAAGTTTATCCAAGGAT 57.019 29.630 6.84 6.84 38.49 3.24
2523 2867 4.990543 TTGAGCTTTATCCGCATTATCG 57.009 40.909 0.00 0.00 0.00 2.92
2526 2870 2.738846 AGCTTTATCCGCATTATCGCTG 59.261 45.455 0.00 0.00 0.00 5.18
2532 2876 2.832563 TCCGCATTATCGCTGAAATCA 58.167 42.857 0.00 0.00 0.00 2.57
2534 2878 2.545526 CCGCATTATCGCTGAAATCAGT 59.454 45.455 11.77 0.00 45.45 3.41
2540 2884 7.475565 CGCATTATCGCTGAAATCAGTAATTAC 59.524 37.037 7.57 7.57 45.45 1.89
2541 2885 7.475565 GCATTATCGCTGAAATCAGTAATTACG 59.524 37.037 9.91 5.68 45.45 3.18
2546 2890 6.532302 TCGCTGAAATCAGTAATTACGCTAAA 59.468 34.615 9.91 0.00 45.45 1.85
2776 3120 6.753107 AAGCACCAACCAAATATAGTACAC 57.247 37.500 0.00 0.00 0.00 2.90
2777 3121 4.873827 AGCACCAACCAAATATAGTACACG 59.126 41.667 0.00 0.00 0.00 4.49
2778 3122 4.034742 GCACCAACCAAATATAGTACACGG 59.965 45.833 0.00 0.00 0.00 4.94
2779 3123 4.034742 CACCAACCAAATATAGTACACGGC 59.965 45.833 0.00 0.00 0.00 5.68
2780 3124 3.562557 CCAACCAAATATAGTACACGGCC 59.437 47.826 0.00 0.00 0.00 6.13
2781 3125 3.102052 ACCAAATATAGTACACGGCCG 57.898 47.619 26.86 26.86 0.00 6.13
2782 3126 2.694628 ACCAAATATAGTACACGGCCGA 59.305 45.455 35.90 8.69 0.00 5.54
2783 3127 3.132646 ACCAAATATAGTACACGGCCGAA 59.867 43.478 35.90 14.32 0.00 4.30
2784 3128 4.121317 CCAAATATAGTACACGGCCGAAA 58.879 43.478 35.90 13.90 0.00 3.46
2785 3129 4.210537 CCAAATATAGTACACGGCCGAAAG 59.789 45.833 35.90 22.89 0.00 2.62
2786 3130 4.924305 AATATAGTACACGGCCGAAAGA 57.076 40.909 35.90 11.21 0.00 2.52
2787 3131 5.464030 AATATAGTACACGGCCGAAAGAT 57.536 39.130 35.90 18.29 0.00 2.40
2788 3132 6.579666 AATATAGTACACGGCCGAAAGATA 57.420 37.500 35.90 19.80 0.00 1.98
2789 3133 2.573941 AGTACACGGCCGAAAGATAC 57.426 50.000 35.90 23.14 0.00 2.24
2790 3134 1.820519 AGTACACGGCCGAAAGATACA 59.179 47.619 35.90 4.42 0.00 2.29
2791 3135 2.231964 AGTACACGGCCGAAAGATACAA 59.768 45.455 35.90 3.03 0.00 2.41
2792 3136 1.722011 ACACGGCCGAAAGATACAAG 58.278 50.000 35.90 9.91 0.00 3.16
2793 3137 1.006832 CACGGCCGAAAGATACAAGG 58.993 55.000 35.90 0.00 0.00 3.61
2794 3138 0.611714 ACGGCCGAAAGATACAAGGT 59.388 50.000 35.90 0.00 0.00 3.50
2795 3139 1.006832 CGGCCGAAAGATACAAGGTG 58.993 55.000 24.07 0.00 0.00 4.00
2796 3140 1.404986 CGGCCGAAAGATACAAGGTGA 60.405 52.381 24.07 0.00 0.00 4.02
2797 3141 2.741878 CGGCCGAAAGATACAAGGTGAT 60.742 50.000 24.07 0.00 0.00 3.06
2798 3142 2.614057 GGCCGAAAGATACAAGGTGATG 59.386 50.000 0.00 0.00 0.00 3.07
2799 3143 3.531538 GCCGAAAGATACAAGGTGATGA 58.468 45.455 0.00 0.00 0.00 2.92
2800 3144 3.557595 GCCGAAAGATACAAGGTGATGAG 59.442 47.826 0.00 0.00 0.00 2.90
2801 3145 4.122776 CCGAAAGATACAAGGTGATGAGG 58.877 47.826 0.00 0.00 0.00 3.86
2802 3146 4.383118 CCGAAAGATACAAGGTGATGAGGT 60.383 45.833 0.00 0.00 0.00 3.85
2803 3147 5.178797 CGAAAGATACAAGGTGATGAGGTT 58.821 41.667 0.00 0.00 0.00 3.50
2804 3148 5.063944 CGAAAGATACAAGGTGATGAGGTTG 59.936 44.000 0.00 0.00 0.00 3.77
2805 3149 3.878778 AGATACAAGGTGATGAGGTTGC 58.121 45.455 0.00 0.00 0.00 4.17
2806 3150 2.489938 TACAAGGTGATGAGGTTGCC 57.510 50.000 0.00 0.00 0.00 4.52
2807 3151 0.251341 ACAAGGTGATGAGGTTGCCC 60.251 55.000 0.00 0.00 0.00 5.36
2808 3152 0.967380 CAAGGTGATGAGGTTGCCCC 60.967 60.000 0.00 0.00 0.00 5.80
2809 3153 2.043953 GGTGATGAGGTTGCCCCC 60.044 66.667 0.00 0.00 0.00 5.40
2810 3154 2.616458 GGTGATGAGGTTGCCCCCT 61.616 63.158 0.00 0.00 37.62 4.79
2811 3155 1.384191 GTGATGAGGTTGCCCCCTT 59.616 57.895 0.00 0.00 34.03 3.95
2812 3156 0.623723 GTGATGAGGTTGCCCCCTTA 59.376 55.000 0.00 0.00 34.03 2.69
2813 3157 0.623723 TGATGAGGTTGCCCCCTTAC 59.376 55.000 0.00 0.00 34.03 2.34
2814 3158 0.623723 GATGAGGTTGCCCCCTTACA 59.376 55.000 0.00 0.00 34.03 2.41
2815 3159 1.005450 GATGAGGTTGCCCCCTTACAA 59.995 52.381 0.00 0.00 34.03 2.41
2816 3160 0.854218 TGAGGTTGCCCCCTTACAAA 59.146 50.000 0.00 0.00 34.03 2.83
2817 3161 1.203001 TGAGGTTGCCCCCTTACAAAG 60.203 52.381 0.00 0.00 34.03 2.77
2818 3162 0.541998 AGGTTGCCCCCTTACAAAGC 60.542 55.000 0.00 0.00 0.00 3.51
2819 3163 1.541310 GGTTGCCCCCTTACAAAGCC 61.541 60.000 0.00 0.00 0.00 4.35
2820 3164 1.605165 TTGCCCCCTTACAAAGCCG 60.605 57.895 0.00 0.00 0.00 5.52
2821 3165 2.070399 TTGCCCCCTTACAAAGCCGA 62.070 55.000 0.00 0.00 0.00 5.54
2822 3166 1.076995 GCCCCCTTACAAAGCCGAT 60.077 57.895 0.00 0.00 0.00 4.18
2823 3167 1.101635 GCCCCCTTACAAAGCCGATC 61.102 60.000 0.00 0.00 0.00 3.69
2824 3168 0.465642 CCCCCTTACAAAGCCGATCC 60.466 60.000 0.00 0.00 0.00 3.36
2825 3169 0.546598 CCCCTTACAAAGCCGATCCT 59.453 55.000 0.00 0.00 0.00 3.24
2826 3170 1.766496 CCCCTTACAAAGCCGATCCTA 59.234 52.381 0.00 0.00 0.00 2.94
2827 3171 2.224305 CCCCTTACAAAGCCGATCCTAG 60.224 54.545 0.00 0.00 0.00 3.02
2828 3172 2.224305 CCCTTACAAAGCCGATCCTAGG 60.224 54.545 0.82 0.82 0.00 3.02
2836 3180 3.888093 CCGATCCTAGGCTAAACGG 57.112 57.895 2.96 10.28 0.00 4.44
2837 3181 0.317479 CCGATCCTAGGCTAAACGGG 59.683 60.000 2.96 6.00 36.08 5.28
2838 3182 1.038280 CGATCCTAGGCTAAACGGGT 58.962 55.000 2.96 0.00 0.00 5.28
2839 3183 1.000496 CGATCCTAGGCTAAACGGGTC 60.000 57.143 2.96 0.00 0.00 4.46
2840 3184 2.037144 GATCCTAGGCTAAACGGGTCA 58.963 52.381 2.96 0.00 0.00 4.02
2841 3185 1.188863 TCCTAGGCTAAACGGGTCAC 58.811 55.000 2.96 0.00 0.00 3.67
2865 3209 2.813908 CGCAAGGGACTACGCCAC 60.814 66.667 0.00 0.00 38.49 5.01
2866 3210 2.345991 GCAAGGGACTACGCCACA 59.654 61.111 0.00 0.00 38.49 4.17
2867 3211 1.741770 GCAAGGGACTACGCCACAG 60.742 63.158 0.00 0.00 38.49 3.66
2868 3212 1.972198 CAAGGGACTACGCCACAGA 59.028 57.895 0.00 0.00 38.49 3.41
2869 3213 0.320374 CAAGGGACTACGCCACAGAA 59.680 55.000 0.00 0.00 38.49 3.02
2870 3214 1.053424 AAGGGACTACGCCACAGAAA 58.947 50.000 0.00 0.00 38.49 2.52
2871 3215 0.320697 AGGGACTACGCCACAGAAAC 59.679 55.000 0.00 0.00 36.02 2.78
2872 3216 0.034337 GGGACTACGCCACAGAAACA 59.966 55.000 0.00 0.00 0.00 2.83
2873 3217 1.338769 GGGACTACGCCACAGAAACAT 60.339 52.381 0.00 0.00 0.00 2.71
2874 3218 2.093869 GGGACTACGCCACAGAAACATA 60.094 50.000 0.00 0.00 0.00 2.29
2875 3219 3.592059 GGACTACGCCACAGAAACATAA 58.408 45.455 0.00 0.00 0.00 1.90
2876 3220 3.370061 GGACTACGCCACAGAAACATAAC 59.630 47.826 0.00 0.00 0.00 1.89
2877 3221 3.991773 GACTACGCCACAGAAACATAACA 59.008 43.478 0.00 0.00 0.00 2.41
2878 3222 3.744426 ACTACGCCACAGAAACATAACAC 59.256 43.478 0.00 0.00 0.00 3.32
2879 3223 2.566913 ACGCCACAGAAACATAACACA 58.433 42.857 0.00 0.00 0.00 3.72
2880 3224 2.548057 ACGCCACAGAAACATAACACAG 59.452 45.455 0.00 0.00 0.00 3.66
2881 3225 2.095768 CGCCACAGAAACATAACACAGG 60.096 50.000 0.00 0.00 0.00 4.00
2882 3226 3.146066 GCCACAGAAACATAACACAGGA 58.854 45.455 0.00 0.00 0.00 3.86
2883 3227 3.568007 GCCACAGAAACATAACACAGGAA 59.432 43.478 0.00 0.00 0.00 3.36
2884 3228 4.037446 GCCACAGAAACATAACACAGGAAA 59.963 41.667 0.00 0.00 0.00 3.13
2885 3229 5.451242 GCCACAGAAACATAACACAGGAAAA 60.451 40.000 0.00 0.00 0.00 2.29
2886 3230 6.738453 GCCACAGAAACATAACACAGGAAAAT 60.738 38.462 0.00 0.00 0.00 1.82
2887 3231 6.863126 CCACAGAAACATAACACAGGAAAATC 59.137 38.462 0.00 0.00 0.00 2.17
2888 3232 7.255590 CCACAGAAACATAACACAGGAAAATCT 60.256 37.037 0.00 0.00 0.00 2.40
2889 3233 7.592533 CACAGAAACATAACACAGGAAAATCTG 59.407 37.037 0.00 0.00 40.40 2.90
2890 3234 7.502226 ACAGAAACATAACACAGGAAAATCTGA 59.498 33.333 0.00 0.00 38.11 3.27
2891 3235 8.019669 CAGAAACATAACACAGGAAAATCTGAG 58.980 37.037 0.00 0.00 38.11 3.35
2892 3236 7.721399 AGAAACATAACACAGGAAAATCTGAGT 59.279 33.333 0.00 0.00 39.57 3.41
2893 3237 8.918202 AAACATAACACAGGAAAATCTGAGTA 57.082 30.769 0.00 0.00 37.54 2.59
2894 3238 7.907214 ACATAACACAGGAAAATCTGAGTAC 57.093 36.000 0.00 0.00 37.54 2.73
2895 3239 7.450074 ACATAACACAGGAAAATCTGAGTACA 58.550 34.615 0.00 0.00 37.54 2.90
2896 3240 7.936847 ACATAACACAGGAAAATCTGAGTACAA 59.063 33.333 0.00 0.00 37.54 2.41
2897 3241 6.619801 AACACAGGAAAATCTGAGTACAAC 57.380 37.500 0.00 0.00 37.54 3.32
2898 3242 5.680619 ACACAGGAAAATCTGAGTACAACA 58.319 37.500 0.00 0.00 36.94 3.33
2899 3243 5.527582 ACACAGGAAAATCTGAGTACAACAC 59.472 40.000 0.00 0.00 36.94 3.32
2900 3244 5.049405 CACAGGAAAATCTGAGTACAACACC 60.049 44.000 0.00 0.00 38.11 4.16
2901 3245 5.063204 CAGGAAAATCTGAGTACAACACCA 58.937 41.667 0.00 0.00 36.93 4.17
2902 3246 5.049405 CAGGAAAATCTGAGTACAACACCAC 60.049 44.000 0.00 0.00 36.93 4.16
2903 3247 4.084013 GGAAAATCTGAGTACAACACCACG 60.084 45.833 0.00 0.00 0.00 4.94
2904 3248 2.743636 ATCTGAGTACAACACCACGG 57.256 50.000 0.00 0.00 0.00 4.94
2905 3249 1.694844 TCTGAGTACAACACCACGGA 58.305 50.000 0.00 0.00 0.00 4.69
2906 3250 2.033372 TCTGAGTACAACACCACGGAA 58.967 47.619 0.00 0.00 0.00 4.30
2907 3251 2.631062 TCTGAGTACAACACCACGGAAT 59.369 45.455 0.00 0.00 0.00 3.01
2908 3252 2.736721 CTGAGTACAACACCACGGAATG 59.263 50.000 0.00 0.00 0.00 2.67
2909 3253 1.463444 GAGTACAACACCACGGAATGC 59.537 52.381 0.00 0.00 0.00 3.56
2910 3254 0.519961 GTACAACACCACGGAATGCC 59.480 55.000 0.00 0.00 0.00 4.40
2925 3269 4.102649 GGAATGCCGTAAAACACTTATGC 58.897 43.478 0.00 0.00 0.00 3.14
2926 3270 4.142469 GGAATGCCGTAAAACACTTATGCT 60.142 41.667 0.00 0.00 0.00 3.79
2927 3271 4.616181 ATGCCGTAAAACACTTATGCTC 57.384 40.909 0.00 0.00 0.00 4.26
2928 3272 2.745281 TGCCGTAAAACACTTATGCTCC 59.255 45.455 0.00 0.00 0.00 4.70
2929 3273 2.745281 GCCGTAAAACACTTATGCTCCA 59.255 45.455 0.00 0.00 0.00 3.86
2930 3274 3.425758 GCCGTAAAACACTTATGCTCCAC 60.426 47.826 0.00 0.00 0.00 4.02
2931 3275 3.181524 CCGTAAAACACTTATGCTCCACG 60.182 47.826 0.00 0.00 0.00 4.94
2932 3276 3.676172 CGTAAAACACTTATGCTCCACGA 59.324 43.478 0.00 0.00 0.00 4.35
2933 3277 4.433805 CGTAAAACACTTATGCTCCACGAC 60.434 45.833 0.00 0.00 0.00 4.34
2934 3278 2.831685 AACACTTATGCTCCACGACA 57.168 45.000 0.00 0.00 0.00 4.35
2935 3279 2.831685 ACACTTATGCTCCACGACAA 57.168 45.000 0.00 0.00 0.00 3.18
2936 3280 2.413837 ACACTTATGCTCCACGACAAC 58.586 47.619 0.00 0.00 0.00 3.32
2937 3281 1.390123 CACTTATGCTCCACGACAACG 59.610 52.381 0.00 0.00 45.75 4.10
2938 3282 0.370273 CTTATGCTCCACGACAACGC 59.630 55.000 0.00 0.00 43.96 4.84
2939 3283 1.017177 TTATGCTCCACGACAACGCC 61.017 55.000 0.00 0.00 43.96 5.68
2940 3284 2.845752 TATGCTCCACGACAACGCCC 62.846 60.000 0.00 0.00 43.96 6.13
2941 3285 4.681978 GCTCCACGACAACGCCCT 62.682 66.667 0.00 0.00 43.96 5.19
2942 3286 2.432628 CTCCACGACAACGCCCTC 60.433 66.667 0.00 0.00 43.96 4.30
2943 3287 3.220999 CTCCACGACAACGCCCTCA 62.221 63.158 0.00 0.00 43.96 3.86
2944 3288 2.738521 CCACGACAACGCCCTCAG 60.739 66.667 0.00 0.00 43.96 3.35
2945 3289 2.738521 CACGACAACGCCCTCAGG 60.739 66.667 0.00 0.00 43.96 3.86
2946 3290 2.915659 ACGACAACGCCCTCAGGA 60.916 61.111 0.00 0.00 43.96 3.86
2947 3291 2.125912 CGACAACGCCCTCAGGAG 60.126 66.667 0.00 0.00 39.23 3.69
2957 3301 1.377333 CCTCAGGAGGGAAAACGGC 60.377 63.158 7.48 0.00 44.87 5.68
2958 3302 1.741770 CTCAGGAGGGAAAACGGCG 60.742 63.158 4.80 4.80 0.00 6.46
2959 3303 2.032071 CAGGAGGGAAAACGGCGT 59.968 61.111 6.77 6.77 0.00 5.68
2960 3304 1.186917 TCAGGAGGGAAAACGGCGTA 61.187 55.000 15.20 0.00 0.00 4.42
2961 3305 0.320946 CAGGAGGGAAAACGGCGTAA 60.321 55.000 15.20 0.00 0.00 3.18
2962 3306 0.397564 AGGAGGGAAAACGGCGTAAA 59.602 50.000 15.20 0.00 0.00 2.01
2963 3307 0.800631 GGAGGGAAAACGGCGTAAAG 59.199 55.000 15.20 0.00 0.00 1.85
2985 3329 4.357947 GTCGCTGCCGAGTCCACA 62.358 66.667 0.00 0.00 45.38 4.17
2986 3330 3.611674 TCGCTGCCGAGTCCACAA 61.612 61.111 0.00 0.00 38.82 3.33
2987 3331 2.434884 CGCTGCCGAGTCCACAAT 60.435 61.111 0.00 0.00 36.29 2.71
2988 3332 2.743752 CGCTGCCGAGTCCACAATG 61.744 63.158 0.00 0.00 36.29 2.82
2989 3333 2.401766 GCTGCCGAGTCCACAATGG 61.402 63.158 0.00 0.00 39.43 3.16
2990 3334 1.296392 CTGCCGAGTCCACAATGGA 59.704 57.895 0.00 0.00 45.98 3.41
3001 3345 4.664150 TCCACAATGGACAAAGGTTTTC 57.336 40.909 0.00 0.00 42.67 2.29
3002 3346 4.026744 TCCACAATGGACAAAGGTTTTCA 58.973 39.130 0.00 0.00 42.67 2.69
3003 3347 4.119136 CCACAATGGACAAAGGTTTTCAC 58.881 43.478 0.00 0.00 40.96 3.18
3004 3348 4.119136 CACAATGGACAAAGGTTTTCACC 58.881 43.478 0.00 0.00 44.67 4.02
3005 3349 3.133901 ACAATGGACAAAGGTTTTCACCC 59.866 43.478 0.00 0.00 45.63 4.61
3006 3350 1.394618 TGGACAAAGGTTTTCACCCG 58.605 50.000 0.00 0.00 45.63 5.28
3007 3351 0.671796 GGACAAAGGTTTTCACCCGG 59.328 55.000 0.00 0.00 45.63 5.73
3008 3352 1.682740 GACAAAGGTTTTCACCCGGA 58.317 50.000 0.73 0.00 45.63 5.14
3009 3353 2.025898 GACAAAGGTTTTCACCCGGAA 58.974 47.619 0.73 0.00 45.63 4.30
3010 3354 1.752498 ACAAAGGTTTTCACCCGGAAC 59.248 47.619 0.73 0.00 45.63 3.62
3011 3355 1.067974 CAAAGGTTTTCACCCGGAACC 59.932 52.381 12.92 12.92 45.63 3.62
3012 3356 0.468585 AAGGTTTTCACCCGGAACCC 60.469 55.000 16.28 0.00 45.63 4.11
3013 3357 1.152715 GGTTTTCACCCGGAACCCA 60.153 57.895 0.73 0.00 37.45 4.51
3014 3358 1.176619 GGTTTTCACCCGGAACCCAG 61.177 60.000 0.73 0.00 37.45 4.45
3015 3359 0.179012 GTTTTCACCCGGAACCCAGA 60.179 55.000 0.73 0.00 34.56 3.86
3016 3360 0.179012 TTTTCACCCGGAACCCAGAC 60.179 55.000 0.73 0.00 34.56 3.51
3017 3361 1.346479 TTTCACCCGGAACCCAGACA 61.346 55.000 0.73 0.00 34.56 3.41
3018 3362 2.032071 CACCCGGAACCCAGACAC 59.968 66.667 0.73 0.00 0.00 3.67
3019 3363 2.446994 ACCCGGAACCCAGACACA 60.447 61.111 0.73 0.00 0.00 3.72
3020 3364 2.347490 CCCGGAACCCAGACACAG 59.653 66.667 0.73 0.00 0.00 3.66
3021 3365 2.214216 CCCGGAACCCAGACACAGA 61.214 63.158 0.73 0.00 0.00 3.41
3022 3366 1.293498 CCGGAACCCAGACACAGAG 59.707 63.158 0.00 0.00 0.00 3.35
3023 3367 1.185618 CCGGAACCCAGACACAGAGA 61.186 60.000 0.00 0.00 0.00 3.10
3024 3368 0.244994 CGGAACCCAGACACAGAGAG 59.755 60.000 0.00 0.00 0.00 3.20
3025 3369 0.610687 GGAACCCAGACACAGAGAGG 59.389 60.000 0.00 0.00 0.00 3.69
3026 3370 1.633774 GAACCCAGACACAGAGAGGA 58.366 55.000 0.00 0.00 0.00 3.71
3027 3371 1.548269 GAACCCAGACACAGAGAGGAG 59.452 57.143 0.00 0.00 0.00 3.69
3028 3372 0.902516 ACCCAGACACAGAGAGGAGC 60.903 60.000 0.00 0.00 0.00 4.70
3029 3373 0.902048 CCCAGACACAGAGAGGAGCA 60.902 60.000 0.00 0.00 0.00 4.26
3030 3374 0.246086 CCAGACACAGAGAGGAGCAC 59.754 60.000 0.00 0.00 0.00 4.40
3031 3375 0.246086 CAGACACAGAGAGGAGCACC 59.754 60.000 0.00 0.00 0.00 5.01
3032 3376 0.178950 AGACACAGAGAGGAGCACCA 60.179 55.000 2.07 0.00 38.94 4.17
3033 3377 0.037790 GACACAGAGAGGAGCACCAC 60.038 60.000 2.07 0.00 38.94 4.16
3034 3378 1.080230 CACAGAGAGGAGCACCACG 60.080 63.158 2.07 0.00 38.94 4.94
3035 3379 1.228583 ACAGAGAGGAGCACCACGA 60.229 57.895 2.07 0.00 38.94 4.35
3036 3380 1.214062 CAGAGAGGAGCACCACGAC 59.786 63.158 2.07 0.00 38.94 4.34
3037 3381 2.179517 GAGAGGAGCACCACGACG 59.820 66.667 2.07 0.00 38.94 5.12
3038 3382 2.282251 AGAGGAGCACCACGACGA 60.282 61.111 0.00 0.00 38.94 4.20
3039 3383 2.126424 GAGGAGCACCACGACGAC 60.126 66.667 0.00 0.00 38.94 4.34
3040 3384 3.948086 GAGGAGCACCACGACGACG 62.948 68.421 5.58 5.58 45.75 5.12
3052 3396 2.311450 CGACGACGTCTTCAAGAAGA 57.689 50.000 24.36 8.37 44.47 2.87
3062 3406 2.880890 TCTTCAAGAAGAAAGCAGCACC 59.119 45.455 9.93 0.00 43.79 5.01
3063 3407 1.609208 TCAAGAAGAAAGCAGCACCC 58.391 50.000 0.00 0.00 0.00 4.61
3064 3408 1.133823 TCAAGAAGAAAGCAGCACCCA 60.134 47.619 0.00 0.00 0.00 4.51
3065 3409 1.891150 CAAGAAGAAAGCAGCACCCAT 59.109 47.619 0.00 0.00 0.00 4.00
3066 3410 1.542492 AGAAGAAAGCAGCACCCATG 58.458 50.000 0.00 0.00 0.00 3.66
3067 3411 1.074405 AGAAGAAAGCAGCACCCATGA 59.926 47.619 0.00 0.00 0.00 3.07
3068 3412 1.471684 GAAGAAAGCAGCACCCATGAG 59.528 52.381 0.00 0.00 0.00 2.90
3069 3413 0.964358 AGAAAGCAGCACCCATGAGC 60.964 55.000 0.00 0.00 0.00 4.26
3070 3414 1.941999 GAAAGCAGCACCCATGAGCC 61.942 60.000 0.00 0.00 0.00 4.70
3071 3415 2.436596 AAAGCAGCACCCATGAGCCT 62.437 55.000 0.00 0.00 0.00 4.58
3072 3416 2.827642 GCAGCACCCATGAGCCTC 60.828 66.667 0.00 0.00 0.00 4.70
3073 3417 2.124403 CAGCACCCATGAGCCTCC 60.124 66.667 0.00 0.00 0.00 4.30
3074 3418 2.285969 AGCACCCATGAGCCTCCT 60.286 61.111 0.00 0.00 0.00 3.69
3075 3419 2.191641 GCACCCATGAGCCTCCTC 59.808 66.667 0.00 0.00 38.62 3.71
3076 3420 2.503061 CACCCATGAGCCTCCTCG 59.497 66.667 0.00 0.00 41.13 4.63
3077 3421 2.060383 CACCCATGAGCCTCCTCGA 61.060 63.158 0.00 0.00 41.13 4.04
3078 3422 1.760086 ACCCATGAGCCTCCTCGAG 60.760 63.158 5.13 5.13 41.13 4.04
3086 3430 2.443016 CCTCCTCGAGGTCCCCAG 60.443 72.222 30.17 19.32 44.25 4.45
3087 3431 2.684104 CTCCTCGAGGTCCCCAGA 59.316 66.667 30.17 8.98 36.34 3.86
3088 3432 1.000486 CTCCTCGAGGTCCCCAGAA 60.000 63.158 30.17 8.20 36.34 3.02
3089 3433 1.305046 TCCTCGAGGTCCCCAGAAC 60.305 63.158 30.17 0.00 36.34 3.01
3090 3434 1.609501 CCTCGAGGTCCCCAGAACA 60.610 63.158 24.04 0.00 29.15 3.18
3091 3435 1.192146 CCTCGAGGTCCCCAGAACAA 61.192 60.000 24.04 0.00 29.15 2.83
3092 3436 0.247736 CTCGAGGTCCCCAGAACAAG 59.752 60.000 3.91 0.00 29.15 3.16
3093 3437 1.376037 CGAGGTCCCCAGAACAAGC 60.376 63.158 0.00 0.00 29.15 4.01
3094 3438 1.376037 GAGGTCCCCAGAACAAGCG 60.376 63.158 0.00 0.00 29.15 4.68
3095 3439 3.056328 GGTCCCCAGAACAAGCGC 61.056 66.667 0.00 0.00 0.00 5.92
3096 3440 3.423154 GTCCCCAGAACAAGCGCG 61.423 66.667 0.00 0.00 0.00 6.86
3097 3441 3.621805 TCCCCAGAACAAGCGCGA 61.622 61.111 12.10 0.00 0.00 5.87
3098 3442 2.436646 CCCCAGAACAAGCGCGAT 60.437 61.111 12.10 0.00 0.00 4.58
3099 3443 2.753966 CCCCAGAACAAGCGCGATG 61.754 63.158 12.10 10.99 0.00 3.84
3100 3444 1.741401 CCCAGAACAAGCGCGATGA 60.741 57.895 20.68 0.00 0.00 2.92
3101 3445 1.699656 CCCAGAACAAGCGCGATGAG 61.700 60.000 20.68 2.02 0.00 2.90
3102 3446 0.737367 CCAGAACAAGCGCGATGAGA 60.737 55.000 20.68 0.00 0.00 3.27
3103 3447 1.070821 CAGAACAAGCGCGATGAGAA 58.929 50.000 20.68 0.00 0.00 2.87
3104 3448 1.071605 AGAACAAGCGCGATGAGAAC 58.928 50.000 20.68 9.70 0.00 3.01
3105 3449 0.790207 GAACAAGCGCGATGAGAACA 59.210 50.000 20.68 0.00 0.00 3.18
3106 3450 1.194547 GAACAAGCGCGATGAGAACAA 59.805 47.619 20.68 0.00 0.00 2.83
3107 3451 1.225855 ACAAGCGCGATGAGAACAAA 58.774 45.000 20.68 0.00 0.00 2.83
3108 3452 1.806542 ACAAGCGCGATGAGAACAAAT 59.193 42.857 20.68 0.00 0.00 2.32
3109 3453 2.159653 ACAAGCGCGATGAGAACAAATC 60.160 45.455 20.68 0.00 0.00 2.17
3110 3454 2.015736 AGCGCGATGAGAACAAATCT 57.984 45.000 12.10 0.00 42.61 2.40
3122 3466 5.972327 AGAACAAATCTCCAGATCCAGAT 57.028 39.130 0.00 0.00 30.46 2.90
3123 3467 6.324601 AGAACAAATCTCCAGATCCAGATT 57.675 37.500 6.41 6.41 40.43 2.40
3124 3468 6.120905 AGAACAAATCTCCAGATCCAGATTG 58.879 40.000 11.18 8.86 38.98 2.67
3125 3469 4.789807 ACAAATCTCCAGATCCAGATTGG 58.210 43.478 11.18 10.84 38.98 3.16
3126 3470 4.142790 CAAATCTCCAGATCCAGATTGGG 58.857 47.826 11.18 5.58 38.98 4.12
3127 3471 1.811778 TCTCCAGATCCAGATTGGGG 58.188 55.000 0.00 0.00 38.32 4.96
3128 3472 0.110104 CTCCAGATCCAGATTGGGGC 59.890 60.000 0.00 0.00 38.32 5.80
3129 3473 0.624206 TCCAGATCCAGATTGGGGCA 60.624 55.000 0.00 0.00 38.32 5.36
3130 3474 0.481567 CCAGATCCAGATTGGGGCAT 59.518 55.000 0.00 0.00 38.32 4.40
3131 3475 1.133262 CCAGATCCAGATTGGGGCATT 60.133 52.381 0.00 0.00 38.32 3.56
3132 3476 1.961394 CAGATCCAGATTGGGGCATTG 59.039 52.381 0.00 0.00 38.32 2.82
3133 3477 0.677842 GATCCAGATTGGGGCATTGC 59.322 55.000 0.00 0.00 38.32 3.56
3144 3488 3.372730 GCATTGCCACTGCCCGAA 61.373 61.111 0.00 0.00 36.33 4.30
3145 3489 2.929903 GCATTGCCACTGCCCGAAA 61.930 57.895 0.00 0.00 36.33 3.46
3146 3490 1.892338 CATTGCCACTGCCCGAAAT 59.108 52.632 0.00 0.00 36.33 2.17
3147 3491 1.102154 CATTGCCACTGCCCGAAATA 58.898 50.000 0.00 0.00 36.33 1.40
3148 3492 1.066002 CATTGCCACTGCCCGAAATAG 59.934 52.381 0.00 0.00 36.33 1.73
3149 3493 0.326595 TTGCCACTGCCCGAAATAGA 59.673 50.000 0.00 0.00 36.33 1.98
3150 3494 0.107703 TGCCACTGCCCGAAATAGAG 60.108 55.000 0.00 0.00 36.33 2.43
3151 3495 0.178068 GCCACTGCCCGAAATAGAGA 59.822 55.000 0.00 0.00 0.00 3.10
3152 3496 1.808133 GCCACTGCCCGAAATAGAGAG 60.808 57.143 0.00 0.00 0.00 3.20
3153 3497 1.576356 CACTGCCCGAAATAGAGAGC 58.424 55.000 0.00 0.00 0.00 4.09
3154 3498 1.134699 CACTGCCCGAAATAGAGAGCA 60.135 52.381 0.00 0.00 0.00 4.26
3155 3499 1.765314 ACTGCCCGAAATAGAGAGCAT 59.235 47.619 0.00 0.00 0.00 3.79
3156 3500 2.141517 CTGCCCGAAATAGAGAGCATG 58.858 52.381 0.00 0.00 0.00 4.06
3157 3501 0.871057 GCCCGAAATAGAGAGCATGC 59.129 55.000 10.51 10.51 0.00 4.06
3158 3502 1.517242 CCCGAAATAGAGAGCATGCC 58.483 55.000 15.66 6.03 0.00 4.40
3159 3503 1.517242 CCGAAATAGAGAGCATGCCC 58.483 55.000 15.66 1.16 0.00 5.36
3160 3504 1.202687 CCGAAATAGAGAGCATGCCCA 60.203 52.381 15.66 0.00 0.00 5.36
3161 3505 2.564771 CGAAATAGAGAGCATGCCCAA 58.435 47.619 15.66 0.00 0.00 4.12
3162 3506 2.547211 CGAAATAGAGAGCATGCCCAAG 59.453 50.000 15.66 0.00 0.00 3.61
3163 3507 1.978454 AATAGAGAGCATGCCCAAGC 58.022 50.000 15.66 0.00 40.48 4.01
3164 3508 0.110104 ATAGAGAGCATGCCCAAGCC 59.890 55.000 15.66 0.00 38.69 4.35
3165 3509 1.273986 TAGAGAGCATGCCCAAGCCA 61.274 55.000 15.66 0.00 38.69 4.75
3166 3510 2.362120 AGAGCATGCCCAAGCCAC 60.362 61.111 15.66 0.00 38.69 5.01
3167 3511 3.455469 GAGCATGCCCAAGCCACC 61.455 66.667 15.66 0.00 38.69 4.61
3170 3514 2.757099 CATGCCCAAGCCACCCTC 60.757 66.667 0.00 0.00 38.69 4.30
3171 3515 4.066139 ATGCCCAAGCCACCCTCC 62.066 66.667 0.00 0.00 38.69 4.30
3175 3519 4.351054 CCAAGCCACCCTCCGCTT 62.351 66.667 0.00 0.00 46.06 4.68
3176 3520 2.747855 CAAGCCACCCTCCGCTTC 60.748 66.667 0.00 0.00 43.35 3.86
3177 3521 3.249189 AAGCCACCCTCCGCTTCA 61.249 61.111 0.00 0.00 41.42 3.02
3178 3522 3.553095 AAGCCACCCTCCGCTTCAC 62.553 63.158 0.00 0.00 41.42 3.18
3180 3524 3.322466 CCACCCTCCGCTTCACCT 61.322 66.667 0.00 0.00 0.00 4.00
3181 3525 2.266055 CACCCTCCGCTTCACCTC 59.734 66.667 0.00 0.00 0.00 3.85
3182 3526 3.003763 ACCCTCCGCTTCACCTCC 61.004 66.667 0.00 0.00 0.00 4.30
3183 3527 3.787001 CCCTCCGCTTCACCTCCC 61.787 72.222 0.00 0.00 0.00 4.30
3184 3528 4.148825 CCTCCGCTTCACCTCCCG 62.149 72.222 0.00 0.00 0.00 5.14
3185 3529 4.821589 CTCCGCTTCACCTCCCGC 62.822 72.222 0.00 0.00 0.00 6.13
3188 3532 4.473520 CGCTTCACCTCCCGCCAT 62.474 66.667 0.00 0.00 0.00 4.40
3189 3533 2.514824 GCTTCACCTCCCGCCATC 60.515 66.667 0.00 0.00 0.00 3.51
3190 3534 2.190578 CTTCACCTCCCGCCATCC 59.809 66.667 0.00 0.00 0.00 3.51
3191 3535 2.609299 TTCACCTCCCGCCATCCA 60.609 61.111 0.00 0.00 0.00 3.41
3192 3536 2.876368 CTTCACCTCCCGCCATCCAC 62.876 65.000 0.00 0.00 0.00 4.02
3193 3537 3.716195 CACCTCCCGCCATCCACA 61.716 66.667 0.00 0.00 0.00 4.17
3194 3538 3.717294 ACCTCCCGCCATCCACAC 61.717 66.667 0.00 0.00 0.00 3.82
3195 3539 4.838152 CCTCCCGCCATCCACACG 62.838 72.222 0.00 0.00 0.00 4.49
3196 3540 3.770040 CTCCCGCCATCCACACGA 61.770 66.667 0.00 0.00 0.00 4.35
3197 3541 4.077184 TCCCGCCATCCACACGAC 62.077 66.667 0.00 0.00 0.00 4.34
3199 3543 4.386951 CCGCCATCCACACGACCA 62.387 66.667 0.00 0.00 0.00 4.02
3200 3544 2.358125 CGCCATCCACACGACCAA 60.358 61.111 0.00 0.00 0.00 3.67
3201 3545 2.390599 CGCCATCCACACGACCAAG 61.391 63.158 0.00 0.00 0.00 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.305516 CCTTTGTGCTGGCCACCC 61.306 66.667 0.00 0.00 44.01 4.61
1 2 1.598701 GATCCTTTGTGCTGGCCACC 61.599 60.000 0.00 0.00 44.01 4.61
2 3 0.895100 TGATCCTTTGTGCTGGCCAC 60.895 55.000 0.00 0.00 44.90 5.01
67 68 7.385205 GCAGACAGCCTTCGAATATCTTATTTA 59.615 37.037 0.00 0.00 37.23 1.40
85 86 4.691860 ATTAGTCATGTTTGCAGACAGC 57.308 40.909 15.89 8.43 45.96 4.40
138 139 3.394674 TTTGTGCTCTGTTATGGTCGA 57.605 42.857 0.00 0.00 0.00 4.20
139 140 3.364964 GGTTTTGTGCTCTGTTATGGTCG 60.365 47.826 0.00 0.00 0.00 4.79
140 141 3.568007 TGGTTTTGTGCTCTGTTATGGTC 59.432 43.478 0.00 0.00 0.00 4.02
211 233 5.008217 TGTTCATGGGTTTCTTTGTAGTTCG 59.992 40.000 0.00 0.00 0.00 3.95
218 240 2.289010 GCCCTGTTCATGGGTTTCTTTG 60.289 50.000 0.00 0.00 46.22 2.77
242 264 4.164822 CATTGTCGGGAATGGAATATGC 57.835 45.455 0.00 0.00 30.82 3.14
253 280 2.226330 CTGTTGTTTCCATTGTCGGGA 58.774 47.619 0.00 0.00 0.00 5.14
257 284 4.992688 TGTGAACTGTTGTTTCCATTGTC 58.007 39.130 0.00 0.00 36.39 3.18
268 295 1.536766 ACGGATGCATGTGAACTGTTG 59.463 47.619 2.46 0.00 0.00 3.33
270 297 1.159285 CACGGATGCATGTGAACTGT 58.841 50.000 2.46 0.00 38.36 3.55
276 303 0.173935 ATTTGCCACGGATGCATGTG 59.826 50.000 2.46 7.10 38.76 3.21
397 432 7.154435 TGGAGCTACTTTAGTTGTAGTACTG 57.846 40.000 5.39 0.00 39.47 2.74
399 434 6.035217 GCTGGAGCTACTTTAGTTGTAGTAC 58.965 44.000 0.00 0.00 39.47 2.73
401 436 4.527038 TGCTGGAGCTACTTTAGTTGTAGT 59.473 41.667 0.00 0.00 42.66 2.73
440 594 1.897641 CTGTCGTCCTAGTTTCGCTC 58.102 55.000 0.00 0.00 0.00 5.03
609 779 0.324830 CTCGTTTCTCCCCCTCTCCT 60.325 60.000 0.00 0.00 0.00 3.69
667 840 1.719780 GAAGCCGTCGTCTTTGTACTG 59.280 52.381 0.00 0.00 0.00 2.74
826 1002 2.157834 TTATCAGCGAACGTGTGGTT 57.842 45.000 0.00 0.00 42.96 3.67
865 1041 1.072413 GTTTTTAACACAAGCGCACGC 60.072 47.619 11.47 6.99 42.33 5.34
915 1091 2.235402 TGTAGATTCCGAACTCAACCCC 59.765 50.000 0.00 0.00 0.00 4.95
937 1113 4.451150 GTGTGATCGGGCTGCCGA 62.451 66.667 13.40 13.69 46.30 5.54
984 1163 2.910479 ATGGCGGTCGGCTCGATA 60.910 61.111 17.23 0.00 42.94 2.92
991 1170 4.444838 TTCGTCCATGGCGGTCGG 62.445 66.667 22.59 3.66 45.14 4.79
1008 1187 2.351276 GGTGGCATGGGTTCGTCT 59.649 61.111 0.00 0.00 0.00 4.18
1017 1196 2.815211 CCGTCGACTGGTGGCATG 60.815 66.667 14.70 0.00 0.00 4.06
1155 1334 0.029267 AGGAGGGGCTGGAGATCATT 60.029 55.000 0.00 0.00 0.00 2.57
1914 2096 1.153549 GATCCACTCGTGCTGGTCC 60.154 63.158 6.16 0.00 0.00 4.46
2070 2252 3.690460 CTGGAATACCAAGAAAGCACCT 58.310 45.455 0.00 0.00 46.32 4.00
2196 2386 5.564550 ACACAGAGATCCTGCAACTTAATT 58.435 37.500 10.15 0.00 46.81 1.40
2251 2446 6.587206 TGACCTGACAAAAATATGATGCAA 57.413 33.333 0.00 0.00 0.00 4.08
2258 2453 9.480053 CACAAAAAGATGACCTGACAAAAATAT 57.520 29.630 0.00 0.00 0.00 1.28
2279 2476 6.446318 GTTGATTGATCCACTAAAGCACAAA 58.554 36.000 0.00 0.00 0.00 2.83
2376 2715 9.515020 CACTTTCAGTTTGCAAATTACTTTCTA 57.485 29.630 16.21 0.00 0.00 2.10
2410 2749 5.301555 TCAACACCTAAATGACATCAACGA 58.698 37.500 0.00 0.00 0.00 3.85
2412 2751 7.144722 TCATCAACACCTAAATGACATCAAC 57.855 36.000 0.00 0.00 0.00 3.18
2437 2776 9.787435 AAACATTCTCACTAACACCACTAATTA 57.213 29.630 0.00 0.00 0.00 1.40
2441 2780 7.062749 AGAAACATTCTCACTAACACCACTA 57.937 36.000 0.00 0.00 34.07 2.74
2442 2781 5.930135 AGAAACATTCTCACTAACACCACT 58.070 37.500 0.00 0.00 34.07 4.00
2443 2782 7.441458 ACTTAGAAACATTCTCACTAACACCAC 59.559 37.037 0.00 0.00 41.14 4.16
2444 2783 7.506114 ACTTAGAAACATTCTCACTAACACCA 58.494 34.615 0.00 0.00 41.14 4.17
2445 2784 7.964604 ACTTAGAAACATTCTCACTAACACC 57.035 36.000 0.00 0.00 41.14 4.16
2481 2825 9.801873 GCTCAAATTTTAGCTTCATTACCAATA 57.198 29.630 15.58 0.00 35.80 1.90
2483 2827 7.895759 AGCTCAAATTTTAGCTTCATTACCAA 58.104 30.769 18.97 0.00 46.82 3.67
2506 2850 2.736721 TCAGCGATAATGCGGATAAAGC 59.263 45.455 0.00 0.00 40.67 3.51
2750 3094 8.899771 GTGTACTATATTTGGTTGGTGCTTTAT 58.100 33.333 0.00 0.00 0.00 1.40
2751 3095 7.064847 CGTGTACTATATTTGGTTGGTGCTTTA 59.935 37.037 0.00 0.00 0.00 1.85
2752 3096 6.128117 CGTGTACTATATTTGGTTGGTGCTTT 60.128 38.462 0.00 0.00 0.00 3.51
2753 3097 5.353123 CGTGTACTATATTTGGTTGGTGCTT 59.647 40.000 0.00 0.00 0.00 3.91
2754 3098 4.873827 CGTGTACTATATTTGGTTGGTGCT 59.126 41.667 0.00 0.00 0.00 4.40
2755 3099 4.034742 CCGTGTACTATATTTGGTTGGTGC 59.965 45.833 0.00 0.00 0.00 5.01
2756 3100 4.034742 GCCGTGTACTATATTTGGTTGGTG 59.965 45.833 0.00 0.00 0.00 4.17
2757 3101 4.193865 GCCGTGTACTATATTTGGTTGGT 58.806 43.478 0.00 0.00 0.00 3.67
2758 3102 3.562557 GGCCGTGTACTATATTTGGTTGG 59.437 47.826 0.00 0.00 0.00 3.77
2759 3103 3.246699 CGGCCGTGTACTATATTTGGTTG 59.753 47.826 19.50 0.00 0.00 3.77
2760 3104 3.132646 TCGGCCGTGTACTATATTTGGTT 59.867 43.478 27.15 0.00 0.00 3.67
2761 3105 2.694628 TCGGCCGTGTACTATATTTGGT 59.305 45.455 27.15 0.00 0.00 3.67
2762 3106 3.374220 TCGGCCGTGTACTATATTTGG 57.626 47.619 27.15 0.00 0.00 3.28
2763 3107 5.045215 TCTTTCGGCCGTGTACTATATTTG 58.955 41.667 27.15 2.33 0.00 2.32
2764 3108 5.266733 TCTTTCGGCCGTGTACTATATTT 57.733 39.130 27.15 0.00 0.00 1.40
2765 3109 4.924305 TCTTTCGGCCGTGTACTATATT 57.076 40.909 27.15 0.00 0.00 1.28
2766 3110 5.474532 TGTATCTTTCGGCCGTGTACTATAT 59.525 40.000 27.15 11.24 0.00 0.86
2767 3111 4.821260 TGTATCTTTCGGCCGTGTACTATA 59.179 41.667 27.15 13.35 0.00 1.31
2768 3112 3.633525 TGTATCTTTCGGCCGTGTACTAT 59.366 43.478 27.15 14.33 0.00 2.12
2769 3113 3.016031 TGTATCTTTCGGCCGTGTACTA 58.984 45.455 27.15 10.06 0.00 1.82
2770 3114 1.820519 TGTATCTTTCGGCCGTGTACT 59.179 47.619 27.15 11.11 0.00 2.73
2771 3115 2.282701 TGTATCTTTCGGCCGTGTAC 57.717 50.000 27.15 19.79 0.00 2.90
2772 3116 2.417651 CCTTGTATCTTTCGGCCGTGTA 60.418 50.000 27.15 9.28 0.00 2.90
2773 3117 1.674817 CCTTGTATCTTTCGGCCGTGT 60.675 52.381 27.15 10.18 0.00 4.49
2774 3118 1.006832 CCTTGTATCTTTCGGCCGTG 58.993 55.000 27.15 16.50 0.00 4.94
2775 3119 0.611714 ACCTTGTATCTTTCGGCCGT 59.388 50.000 27.15 7.91 0.00 5.68
2776 3120 1.006832 CACCTTGTATCTTTCGGCCG 58.993 55.000 22.12 22.12 0.00 6.13
2777 3121 2.396590 TCACCTTGTATCTTTCGGCC 57.603 50.000 0.00 0.00 0.00 6.13
2778 3122 3.531538 TCATCACCTTGTATCTTTCGGC 58.468 45.455 0.00 0.00 0.00 5.54
2779 3123 4.122776 CCTCATCACCTTGTATCTTTCGG 58.877 47.826 0.00 0.00 0.00 4.30
2780 3124 4.759782 ACCTCATCACCTTGTATCTTTCG 58.240 43.478 0.00 0.00 0.00 3.46
2781 3125 5.163713 GCAACCTCATCACCTTGTATCTTTC 60.164 44.000 0.00 0.00 0.00 2.62
2782 3126 4.702131 GCAACCTCATCACCTTGTATCTTT 59.298 41.667 0.00 0.00 0.00 2.52
2783 3127 4.265073 GCAACCTCATCACCTTGTATCTT 58.735 43.478 0.00 0.00 0.00 2.40
2784 3128 3.370953 GGCAACCTCATCACCTTGTATCT 60.371 47.826 0.00 0.00 0.00 1.98
2785 3129 2.945668 GGCAACCTCATCACCTTGTATC 59.054 50.000 0.00 0.00 0.00 2.24
2786 3130 3.004752 GGCAACCTCATCACCTTGTAT 57.995 47.619 0.00 0.00 0.00 2.29
2787 3131 2.489938 GGCAACCTCATCACCTTGTA 57.510 50.000 0.00 0.00 0.00 2.41
2788 3132 3.346426 GGCAACCTCATCACCTTGT 57.654 52.632 0.00 0.00 0.00 3.16
2801 3145 1.873270 CGGCTTTGTAAGGGGGCAAC 61.873 60.000 0.00 0.00 0.00 4.17
2802 3146 1.605165 CGGCTTTGTAAGGGGGCAA 60.605 57.895 0.00 0.00 0.00 4.52
2803 3147 1.858739 ATCGGCTTTGTAAGGGGGCA 61.859 55.000 0.00 0.00 0.00 5.36
2804 3148 1.076995 ATCGGCTTTGTAAGGGGGC 60.077 57.895 0.00 0.00 0.00 5.80
2805 3149 0.465642 GGATCGGCTTTGTAAGGGGG 60.466 60.000 0.00 0.00 0.00 5.40
2806 3150 0.546598 AGGATCGGCTTTGTAAGGGG 59.453 55.000 0.00 0.00 0.00 4.79
2807 3151 2.224305 CCTAGGATCGGCTTTGTAAGGG 60.224 54.545 1.05 0.00 0.00 3.95
2808 3152 2.807108 GCCTAGGATCGGCTTTGTAAGG 60.807 54.545 14.75 0.00 44.17 2.69
2809 3153 2.484889 GCCTAGGATCGGCTTTGTAAG 58.515 52.381 14.75 0.00 44.17 2.34
2810 3154 2.614829 GCCTAGGATCGGCTTTGTAA 57.385 50.000 14.75 0.00 44.17 2.41
2818 3162 0.317479 CCCGTTTAGCCTAGGATCGG 59.683 60.000 14.75 15.86 36.85 4.18
2819 3163 1.000496 GACCCGTTTAGCCTAGGATCG 60.000 57.143 14.75 6.26 0.00 3.69
2820 3164 2.037144 TGACCCGTTTAGCCTAGGATC 58.963 52.381 14.75 0.00 0.00 3.36
2821 3165 1.761198 GTGACCCGTTTAGCCTAGGAT 59.239 52.381 14.75 9.51 0.00 3.24
2822 3166 1.188863 GTGACCCGTTTAGCCTAGGA 58.811 55.000 14.75 0.00 0.00 2.94
2823 3167 0.179119 CGTGACCCGTTTAGCCTAGG 60.179 60.000 3.67 3.67 0.00 3.02
2824 3168 0.813184 TCGTGACCCGTTTAGCCTAG 59.187 55.000 0.00 0.00 37.94 3.02
2825 3169 1.203052 CTTCGTGACCCGTTTAGCCTA 59.797 52.381 0.00 0.00 37.94 3.93
2826 3170 0.037605 CTTCGTGACCCGTTTAGCCT 60.038 55.000 0.00 0.00 37.94 4.58
2827 3171 0.037975 TCTTCGTGACCCGTTTAGCC 60.038 55.000 0.00 0.00 37.94 3.93
2828 3172 1.066136 GTCTTCGTGACCCGTTTAGC 58.934 55.000 1.01 0.00 39.69 3.09
2837 3181 2.027625 CCCTTGCGGTCTTCGTGAC 61.028 63.158 3.42 3.42 44.63 3.67
2838 3182 2.204461 TCCCTTGCGGTCTTCGTGA 61.204 57.895 0.00 0.00 41.72 4.35
2839 3183 2.027625 GTCCCTTGCGGTCTTCGTG 61.028 63.158 0.00 0.00 41.72 4.35
2840 3184 0.896940 TAGTCCCTTGCGGTCTTCGT 60.897 55.000 0.00 0.00 41.72 3.85
2841 3185 0.458025 GTAGTCCCTTGCGGTCTTCG 60.458 60.000 0.00 0.00 42.76 3.79
2842 3186 0.458025 CGTAGTCCCTTGCGGTCTTC 60.458 60.000 0.00 0.00 31.81 2.87
2843 3187 1.590147 CGTAGTCCCTTGCGGTCTT 59.410 57.895 0.00 0.00 31.81 3.01
2844 3188 3.003113 GCGTAGTCCCTTGCGGTCT 62.003 63.158 0.00 0.00 34.12 3.85
2845 3189 2.508663 GCGTAGTCCCTTGCGGTC 60.509 66.667 0.00 0.00 0.00 4.79
2846 3190 4.078516 GGCGTAGTCCCTTGCGGT 62.079 66.667 0.00 0.00 0.00 5.68
2847 3191 4.077184 TGGCGTAGTCCCTTGCGG 62.077 66.667 0.00 0.00 0.00 5.69
2848 3192 2.813908 GTGGCGTAGTCCCTTGCG 60.814 66.667 0.00 0.00 0.00 4.85
2849 3193 1.741770 CTGTGGCGTAGTCCCTTGC 60.742 63.158 0.00 0.00 0.00 4.01
2850 3194 0.320374 TTCTGTGGCGTAGTCCCTTG 59.680 55.000 0.00 0.00 0.00 3.61
2851 3195 1.053424 TTTCTGTGGCGTAGTCCCTT 58.947 50.000 0.00 0.00 0.00 3.95
2852 3196 0.320697 GTTTCTGTGGCGTAGTCCCT 59.679 55.000 0.00 0.00 0.00 4.20
2853 3197 0.034337 TGTTTCTGTGGCGTAGTCCC 59.966 55.000 0.00 0.00 0.00 4.46
2854 3198 2.094762 ATGTTTCTGTGGCGTAGTCC 57.905 50.000 0.00 0.00 0.00 3.85
2855 3199 3.991773 TGTTATGTTTCTGTGGCGTAGTC 59.008 43.478 0.00 0.00 0.00 2.59
2856 3200 3.744426 GTGTTATGTTTCTGTGGCGTAGT 59.256 43.478 0.00 0.00 0.00 2.73
2857 3201 3.743911 TGTGTTATGTTTCTGTGGCGTAG 59.256 43.478 0.00 0.00 0.00 3.51
2858 3202 3.729966 TGTGTTATGTTTCTGTGGCGTA 58.270 40.909 0.00 0.00 0.00 4.42
2859 3203 2.548057 CTGTGTTATGTTTCTGTGGCGT 59.452 45.455 0.00 0.00 0.00 5.68
2860 3204 2.095768 CCTGTGTTATGTTTCTGTGGCG 60.096 50.000 0.00 0.00 0.00 5.69
2861 3205 3.146066 TCCTGTGTTATGTTTCTGTGGC 58.854 45.455 0.00 0.00 0.00 5.01
2862 3206 5.766150 TTTCCTGTGTTATGTTTCTGTGG 57.234 39.130 0.00 0.00 0.00 4.17
2863 3207 7.592533 CAGATTTTCCTGTGTTATGTTTCTGTG 59.407 37.037 0.00 0.00 0.00 3.66
2864 3208 7.502226 TCAGATTTTCCTGTGTTATGTTTCTGT 59.498 33.333 0.00 0.00 35.71 3.41
2865 3209 7.874940 TCAGATTTTCCTGTGTTATGTTTCTG 58.125 34.615 0.00 0.00 35.71 3.02
2866 3210 7.721399 ACTCAGATTTTCCTGTGTTATGTTTCT 59.279 33.333 0.00 0.00 37.54 2.52
2867 3211 7.875971 ACTCAGATTTTCCTGTGTTATGTTTC 58.124 34.615 0.00 0.00 37.54 2.78
2868 3212 7.823745 ACTCAGATTTTCCTGTGTTATGTTT 57.176 32.000 0.00 0.00 37.54 2.83
2869 3213 7.936847 TGTACTCAGATTTTCCTGTGTTATGTT 59.063 33.333 0.00 0.00 40.21 2.71
2870 3214 7.450074 TGTACTCAGATTTTCCTGTGTTATGT 58.550 34.615 0.00 0.00 40.21 2.29
2871 3215 7.905604 TGTACTCAGATTTTCCTGTGTTATG 57.094 36.000 0.00 0.00 40.21 1.90
2872 3216 7.936847 TGTTGTACTCAGATTTTCCTGTGTTAT 59.063 33.333 0.00 0.00 40.21 1.89
2873 3217 7.225931 GTGTTGTACTCAGATTTTCCTGTGTTA 59.774 37.037 0.00 0.00 40.21 2.41
2874 3218 6.038271 GTGTTGTACTCAGATTTTCCTGTGTT 59.962 38.462 0.00 0.00 40.21 3.32
2875 3219 5.527582 GTGTTGTACTCAGATTTTCCTGTGT 59.472 40.000 0.00 0.00 41.79 3.72
2876 3220 5.049405 GGTGTTGTACTCAGATTTTCCTGTG 60.049 44.000 0.00 0.00 35.71 3.66
2877 3221 5.063880 GGTGTTGTACTCAGATTTTCCTGT 58.936 41.667 0.00 0.00 35.71 4.00
2878 3222 5.049405 GTGGTGTTGTACTCAGATTTTCCTG 60.049 44.000 0.00 0.00 35.55 3.86
2879 3223 5.063880 GTGGTGTTGTACTCAGATTTTCCT 58.936 41.667 0.00 0.00 0.00 3.36
2880 3224 4.084013 CGTGGTGTTGTACTCAGATTTTCC 60.084 45.833 0.00 0.00 0.00 3.13
2881 3225 4.084013 CCGTGGTGTTGTACTCAGATTTTC 60.084 45.833 0.00 0.00 0.00 2.29
2882 3226 3.813166 CCGTGGTGTTGTACTCAGATTTT 59.187 43.478 0.00 0.00 0.00 1.82
2883 3227 3.070446 TCCGTGGTGTTGTACTCAGATTT 59.930 43.478 0.00 0.00 0.00 2.17
2884 3228 2.631062 TCCGTGGTGTTGTACTCAGATT 59.369 45.455 0.00 0.00 0.00 2.40
2885 3229 2.244695 TCCGTGGTGTTGTACTCAGAT 58.755 47.619 0.00 0.00 0.00 2.90
2886 3230 1.694844 TCCGTGGTGTTGTACTCAGA 58.305 50.000 0.00 0.00 0.00 3.27
2887 3231 2.519377 TTCCGTGGTGTTGTACTCAG 57.481 50.000 0.00 0.00 0.00 3.35
2888 3232 2.761559 CATTCCGTGGTGTTGTACTCA 58.238 47.619 0.00 0.00 0.00 3.41
2889 3233 1.463444 GCATTCCGTGGTGTTGTACTC 59.537 52.381 0.00 0.00 0.00 2.59
2890 3234 1.519408 GCATTCCGTGGTGTTGTACT 58.481 50.000 0.00 0.00 0.00 2.73
2891 3235 0.519961 GGCATTCCGTGGTGTTGTAC 59.480 55.000 0.00 0.00 0.00 2.90
2892 3236 2.935505 GGCATTCCGTGGTGTTGTA 58.064 52.632 0.00 0.00 0.00 2.41
2893 3237 3.758172 GGCATTCCGTGGTGTTGT 58.242 55.556 0.00 0.00 0.00 3.32
2903 3247 4.102649 GCATAAGTGTTTTACGGCATTCC 58.897 43.478 0.00 0.00 0.00 3.01
2904 3248 4.981794 AGCATAAGTGTTTTACGGCATTC 58.018 39.130 0.00 0.00 0.00 2.67
2905 3249 4.142469 GGAGCATAAGTGTTTTACGGCATT 60.142 41.667 0.00 0.00 0.00 3.56
2906 3250 3.377172 GGAGCATAAGTGTTTTACGGCAT 59.623 43.478 0.00 0.00 0.00 4.40
2907 3251 2.745281 GGAGCATAAGTGTTTTACGGCA 59.255 45.455 0.00 0.00 0.00 5.69
2908 3252 2.745281 TGGAGCATAAGTGTTTTACGGC 59.255 45.455 0.00 0.00 0.00 5.68
2909 3253 3.181524 CGTGGAGCATAAGTGTTTTACGG 60.182 47.826 0.00 0.00 30.55 4.02
2910 3254 3.676172 TCGTGGAGCATAAGTGTTTTACG 59.324 43.478 0.00 0.00 33.17 3.18
2911 3255 4.449743 TGTCGTGGAGCATAAGTGTTTTAC 59.550 41.667 0.00 0.00 0.00 2.01
2912 3256 4.633175 TGTCGTGGAGCATAAGTGTTTTA 58.367 39.130 0.00 0.00 0.00 1.52
2913 3257 3.472652 TGTCGTGGAGCATAAGTGTTTT 58.527 40.909 0.00 0.00 0.00 2.43
2914 3258 3.120321 TGTCGTGGAGCATAAGTGTTT 57.880 42.857 0.00 0.00 0.00 2.83
2915 3259 2.806244 GTTGTCGTGGAGCATAAGTGTT 59.194 45.455 0.00 0.00 0.00 3.32
2916 3260 2.413837 GTTGTCGTGGAGCATAAGTGT 58.586 47.619 0.00 0.00 0.00 3.55
2917 3261 1.390123 CGTTGTCGTGGAGCATAAGTG 59.610 52.381 0.00 0.00 0.00 3.16
2918 3262 1.710013 CGTTGTCGTGGAGCATAAGT 58.290 50.000 0.00 0.00 0.00 2.24
2919 3263 0.370273 GCGTTGTCGTGGAGCATAAG 59.630 55.000 0.00 0.00 39.49 1.73
2920 3264 1.017177 GGCGTTGTCGTGGAGCATAA 61.017 55.000 0.00 0.00 39.49 1.90
2921 3265 1.447140 GGCGTTGTCGTGGAGCATA 60.447 57.895 0.00 0.00 39.49 3.14
2922 3266 2.742372 GGCGTTGTCGTGGAGCAT 60.742 61.111 0.00 0.00 39.49 3.79
2923 3267 4.980805 GGGCGTTGTCGTGGAGCA 62.981 66.667 0.00 0.00 39.49 4.26
2924 3268 4.681978 AGGGCGTTGTCGTGGAGC 62.682 66.667 0.00 0.00 39.49 4.70
2925 3269 2.432628 GAGGGCGTTGTCGTGGAG 60.433 66.667 0.00 0.00 39.49 3.86
2926 3270 3.220999 CTGAGGGCGTTGTCGTGGA 62.221 63.158 0.00 0.00 39.49 4.02
2927 3271 2.738521 CTGAGGGCGTTGTCGTGG 60.739 66.667 0.00 0.00 39.49 4.94
2928 3272 2.738521 CCTGAGGGCGTTGTCGTG 60.739 66.667 0.00 0.00 39.49 4.35
2929 3273 2.915659 TCCTGAGGGCGTTGTCGT 60.916 61.111 0.00 0.00 39.49 4.34
2930 3274 2.125912 CTCCTGAGGGCGTTGTCG 60.126 66.667 0.00 0.00 40.37 4.35
2931 3275 2.266055 CCTCCTGAGGGCGTTGTC 59.734 66.667 5.22 0.00 44.87 3.18
2940 3284 1.741770 CGCCGTTTTCCCTCCTGAG 60.742 63.158 0.00 0.00 0.00 3.35
2941 3285 1.186917 TACGCCGTTTTCCCTCCTGA 61.187 55.000 0.00 0.00 0.00 3.86
2942 3286 0.320946 TTACGCCGTTTTCCCTCCTG 60.321 55.000 0.00 0.00 0.00 3.86
2943 3287 0.397564 TTTACGCCGTTTTCCCTCCT 59.602 50.000 0.00 0.00 0.00 3.69
2944 3288 0.800631 CTTTACGCCGTTTTCCCTCC 59.199 55.000 0.00 0.00 0.00 4.30
2945 3289 0.167470 GCTTTACGCCGTTTTCCCTC 59.833 55.000 0.00 0.00 0.00 4.30
2946 3290 1.571215 CGCTTTACGCCGTTTTCCCT 61.571 55.000 0.00 0.00 34.21 4.20
2947 3291 1.154357 CGCTTTACGCCGTTTTCCC 60.154 57.895 0.00 0.00 34.21 3.97
2948 3292 4.427793 CGCTTTACGCCGTTTTCC 57.572 55.556 0.00 0.00 34.21 3.13
2968 3312 3.858868 TTGTGGACTCGGCAGCGAC 62.859 63.158 0.00 0.00 0.00 5.19
2969 3313 2.942796 ATTGTGGACTCGGCAGCGA 61.943 57.895 0.00 0.00 0.00 4.93
2970 3314 2.434884 ATTGTGGACTCGGCAGCG 60.435 61.111 0.00 0.00 0.00 5.18
2971 3315 2.401766 CCATTGTGGACTCGGCAGC 61.402 63.158 0.00 0.00 40.96 5.25
2972 3316 1.296392 TCCATTGTGGACTCGGCAG 59.704 57.895 0.00 0.00 42.67 4.85
2973 3317 3.477582 TCCATTGTGGACTCGGCA 58.522 55.556 0.00 0.00 42.67 5.69
2980 3324 4.026744 TGAAAACCTTTGTCCATTGTGGA 58.973 39.130 0.00 0.00 45.98 4.02
2981 3325 4.119136 GTGAAAACCTTTGTCCATTGTGG 58.881 43.478 0.00 0.00 39.43 4.17
2982 3326 4.119136 GGTGAAAACCTTTGTCCATTGTG 58.881 43.478 0.00 0.00 0.00 3.33
2983 3327 3.133901 GGGTGAAAACCTTTGTCCATTGT 59.866 43.478 0.00 0.00 0.00 2.71
2984 3328 3.727726 GGGTGAAAACCTTTGTCCATTG 58.272 45.455 0.00 0.00 0.00 2.82
2985 3329 2.364002 CGGGTGAAAACCTTTGTCCATT 59.636 45.455 0.00 0.00 0.00 3.16
2986 3330 1.960689 CGGGTGAAAACCTTTGTCCAT 59.039 47.619 0.00 0.00 0.00 3.41
2987 3331 1.394618 CGGGTGAAAACCTTTGTCCA 58.605 50.000 0.00 0.00 0.00 4.02
2988 3332 0.671796 CCGGGTGAAAACCTTTGTCC 59.328 55.000 0.00 0.00 0.00 4.02
2989 3333 1.682740 TCCGGGTGAAAACCTTTGTC 58.317 50.000 0.00 0.00 0.00 3.18
2990 3334 1.752498 GTTCCGGGTGAAAACCTTTGT 59.248 47.619 0.00 0.00 33.94 2.83
2991 3335 1.067974 GGTTCCGGGTGAAAACCTTTG 59.932 52.381 13.41 0.00 39.48 2.77
2992 3336 1.405872 GGTTCCGGGTGAAAACCTTT 58.594 50.000 13.41 0.00 39.48 3.11
2993 3337 0.468585 GGGTTCCGGGTGAAAACCTT 60.469 55.000 18.51 0.00 41.76 3.50
2994 3338 1.152138 GGGTTCCGGGTGAAAACCT 59.848 57.895 18.51 0.00 41.76 3.50
2995 3339 1.152715 TGGGTTCCGGGTGAAAACC 60.153 57.895 12.50 12.50 41.41 3.27
2996 3340 0.179012 TCTGGGTTCCGGGTGAAAAC 60.179 55.000 0.00 0.00 33.94 2.43
2997 3341 0.179012 GTCTGGGTTCCGGGTGAAAA 60.179 55.000 0.00 0.00 33.94 2.29
2998 3342 1.346479 TGTCTGGGTTCCGGGTGAAA 61.346 55.000 0.00 0.00 33.94 2.69
2999 3343 1.766864 TGTCTGGGTTCCGGGTGAA 60.767 57.895 0.00 0.00 0.00 3.18
3000 3344 2.122769 TGTCTGGGTTCCGGGTGA 60.123 61.111 0.00 0.00 0.00 4.02
3001 3345 2.032071 GTGTCTGGGTTCCGGGTG 59.968 66.667 0.00 0.00 0.00 4.61
3002 3346 2.446994 TGTGTCTGGGTTCCGGGT 60.447 61.111 0.00 0.00 0.00 5.28
3003 3347 2.172483 CTCTGTGTCTGGGTTCCGGG 62.172 65.000 0.00 0.00 0.00 5.73
3004 3348 1.185618 TCTCTGTGTCTGGGTTCCGG 61.186 60.000 0.00 0.00 0.00 5.14
3005 3349 0.244994 CTCTCTGTGTCTGGGTTCCG 59.755 60.000 0.00 0.00 0.00 4.30
3006 3350 0.610687 CCTCTCTGTGTCTGGGTTCC 59.389 60.000 0.00 0.00 0.00 3.62
3007 3351 1.548269 CTCCTCTCTGTGTCTGGGTTC 59.452 57.143 0.00 0.00 0.00 3.62
3008 3352 1.638529 CTCCTCTCTGTGTCTGGGTT 58.361 55.000 0.00 0.00 0.00 4.11
3009 3353 0.902516 GCTCCTCTCTGTGTCTGGGT 60.903 60.000 0.00 0.00 0.00 4.51
3010 3354 0.902048 TGCTCCTCTCTGTGTCTGGG 60.902 60.000 0.00 0.00 0.00 4.45
3011 3355 0.246086 GTGCTCCTCTCTGTGTCTGG 59.754 60.000 0.00 0.00 0.00 3.86
3012 3356 0.246086 GGTGCTCCTCTCTGTGTCTG 59.754 60.000 0.00 0.00 0.00 3.51
3013 3357 0.178950 TGGTGCTCCTCTCTGTGTCT 60.179 55.000 6.34 0.00 34.23 3.41
3014 3358 0.037790 GTGGTGCTCCTCTCTGTGTC 60.038 60.000 6.34 0.00 34.23 3.67
3015 3359 1.810606 CGTGGTGCTCCTCTCTGTGT 61.811 60.000 6.34 0.00 34.23 3.72
3016 3360 1.080230 CGTGGTGCTCCTCTCTGTG 60.080 63.158 6.34 0.00 34.23 3.66
3017 3361 1.228583 TCGTGGTGCTCCTCTCTGT 60.229 57.895 6.34 0.00 34.23 3.41
3018 3362 1.214062 GTCGTGGTGCTCCTCTCTG 59.786 63.158 6.34 0.00 34.23 3.35
3019 3363 2.336478 CGTCGTGGTGCTCCTCTCT 61.336 63.158 6.34 0.00 34.23 3.10
3020 3364 2.179517 CGTCGTGGTGCTCCTCTC 59.820 66.667 6.34 0.00 34.23 3.20
3021 3365 2.282251 TCGTCGTGGTGCTCCTCT 60.282 61.111 6.34 0.00 34.23 3.69
3022 3366 2.126424 GTCGTCGTGGTGCTCCTC 60.126 66.667 6.34 1.30 34.23 3.71
3023 3367 4.039357 CGTCGTCGTGGTGCTCCT 62.039 66.667 6.34 0.00 34.23 3.69
3033 3377 2.311450 TCTTCTTGAAGACGTCGTCG 57.689 50.000 23.32 12.34 37.67 5.12
3034 3378 3.121295 GCTTTCTTCTTGAAGACGTCGTC 60.121 47.826 22.45 22.45 35.89 4.20
3035 3379 2.795470 GCTTTCTTCTTGAAGACGTCGT 59.205 45.455 10.46 6.85 35.89 4.34
3036 3380 2.794910 TGCTTTCTTCTTGAAGACGTCG 59.205 45.455 10.46 0.00 35.89 5.12
3037 3381 3.363477 GCTGCTTTCTTCTTGAAGACGTC 60.363 47.826 7.70 7.70 35.89 4.34
3038 3382 2.545946 GCTGCTTTCTTCTTGAAGACGT 59.454 45.455 12.06 0.00 35.89 4.34
3039 3383 2.545526 TGCTGCTTTCTTCTTGAAGACG 59.454 45.455 12.06 8.11 35.89 4.18
3040 3384 3.304324 GGTGCTGCTTTCTTCTTGAAGAC 60.304 47.826 12.06 3.19 35.89 3.01
3041 3385 2.880890 GGTGCTGCTTTCTTCTTGAAGA 59.119 45.455 8.80 8.80 35.89 2.87
3042 3386 2.030451 GGGTGCTGCTTTCTTCTTGAAG 60.030 50.000 0.00 4.13 35.89 3.02
3043 3387 1.956477 GGGTGCTGCTTTCTTCTTGAA 59.044 47.619 0.00 0.00 0.00 2.69
3044 3388 1.133823 TGGGTGCTGCTTTCTTCTTGA 60.134 47.619 0.00 0.00 0.00 3.02
3045 3389 1.321474 TGGGTGCTGCTTTCTTCTTG 58.679 50.000 0.00 0.00 0.00 3.02
3046 3390 1.891150 CATGGGTGCTGCTTTCTTCTT 59.109 47.619 0.00 0.00 0.00 2.52
3047 3391 1.074405 TCATGGGTGCTGCTTTCTTCT 59.926 47.619 0.00 0.00 0.00 2.85
3048 3392 1.471684 CTCATGGGTGCTGCTTTCTTC 59.528 52.381 0.00 0.00 0.00 2.87
3049 3393 1.542492 CTCATGGGTGCTGCTTTCTT 58.458 50.000 0.00 0.00 0.00 2.52
3050 3394 0.964358 GCTCATGGGTGCTGCTTTCT 60.964 55.000 0.00 0.00 0.00 2.52
3051 3395 1.509923 GCTCATGGGTGCTGCTTTC 59.490 57.895 0.00 0.00 0.00 2.62
3052 3396 1.980772 GGCTCATGGGTGCTGCTTT 60.981 57.895 0.00 0.00 34.07 3.51
3053 3397 2.362120 GGCTCATGGGTGCTGCTT 60.362 61.111 0.00 0.00 34.07 3.91
3054 3398 3.336568 AGGCTCATGGGTGCTGCT 61.337 61.111 0.00 0.00 34.07 4.24
3055 3399 2.827642 GAGGCTCATGGGTGCTGC 60.828 66.667 10.25 0.00 34.07 5.25
3056 3400 2.124403 GGAGGCTCATGGGTGCTG 60.124 66.667 17.69 0.00 34.07 4.41
3057 3401 2.285969 AGGAGGCTCATGGGTGCT 60.286 61.111 17.69 0.00 34.07 4.40
3058 3402 2.191641 GAGGAGGCTCATGGGTGC 59.808 66.667 17.69 0.00 0.00 5.01
3059 3403 2.025767 CTCGAGGAGGCTCATGGGTG 62.026 65.000 17.69 3.96 0.00 4.61
3060 3404 1.760086 CTCGAGGAGGCTCATGGGT 60.760 63.158 17.69 0.00 0.00 4.51
3061 3405 2.506061 CCTCGAGGAGGCTCATGGG 61.506 68.421 28.21 7.38 43.29 4.00
3062 3406 3.136750 CCTCGAGGAGGCTCATGG 58.863 66.667 28.21 11.17 43.29 3.66
3079 3423 3.423154 CGCGCTTGTTCTGGGGAC 61.423 66.667 5.56 0.00 0.00 4.46
3080 3424 2.954684 ATCGCGCTTGTTCTGGGGA 61.955 57.895 5.56 0.00 0.00 4.81
3081 3425 2.436646 ATCGCGCTTGTTCTGGGG 60.437 61.111 5.56 0.00 0.00 4.96
3082 3426 1.699656 CTCATCGCGCTTGTTCTGGG 61.700 60.000 5.56 0.00 0.00 4.45
3083 3427 0.737367 TCTCATCGCGCTTGTTCTGG 60.737 55.000 5.56 0.00 0.00 3.86
3084 3428 1.070821 TTCTCATCGCGCTTGTTCTG 58.929 50.000 5.56 0.00 0.00 3.02
3085 3429 1.071605 GTTCTCATCGCGCTTGTTCT 58.928 50.000 5.56 0.00 0.00 3.01
3086 3430 0.790207 TGTTCTCATCGCGCTTGTTC 59.210 50.000 5.56 0.00 0.00 3.18
3087 3431 1.225855 TTGTTCTCATCGCGCTTGTT 58.774 45.000 5.56 0.00 0.00 2.83
3088 3432 1.225855 TTTGTTCTCATCGCGCTTGT 58.774 45.000 5.56 0.00 0.00 3.16
3089 3433 2.094894 AGATTTGTTCTCATCGCGCTTG 59.905 45.455 5.56 2.95 0.00 4.01
3090 3434 2.350522 AGATTTGTTCTCATCGCGCTT 58.649 42.857 5.56 0.00 0.00 4.68
3091 3435 2.015736 AGATTTGTTCTCATCGCGCT 57.984 45.000 5.56 0.00 0.00 5.92
3099 3443 8.596560 CCAATCTGGATCTGGAGATTTGTTCTC 61.597 44.444 10.59 0.00 44.50 2.87
3100 3444 5.972327 ATCTGGATCTGGAGATTTGTTCT 57.028 39.130 0.00 0.00 37.41 3.01
3101 3445 5.298777 CCAATCTGGATCTGGAGATTTGTTC 59.701 44.000 10.59 0.00 40.96 3.18
3102 3446 5.198965 CCAATCTGGATCTGGAGATTTGTT 58.801 41.667 10.59 0.00 40.96 2.83
3103 3447 4.386088 CCCAATCTGGATCTGGAGATTTGT 60.386 45.833 10.59 0.00 40.96 2.83
3104 3448 4.142790 CCCAATCTGGATCTGGAGATTTG 58.857 47.826 10.59 8.53 40.96 2.32
3105 3449 3.139770 CCCCAATCTGGATCTGGAGATTT 59.860 47.826 10.59 0.00 40.96 2.17
3106 3450 2.715336 CCCCAATCTGGATCTGGAGATT 59.285 50.000 0.00 4.84 40.96 2.40
3107 3451 2.346529 CCCCAATCTGGATCTGGAGAT 58.653 52.381 0.00 0.00 40.96 2.75
3108 3452 1.811778 CCCCAATCTGGATCTGGAGA 58.188 55.000 0.00 0.00 40.96 3.71
3109 3453 0.110104 GCCCCAATCTGGATCTGGAG 59.890 60.000 0.00 0.00 40.96 3.86
3110 3454 0.624206 TGCCCCAATCTGGATCTGGA 60.624 55.000 0.00 0.00 40.96 3.86
3111 3455 0.481567 ATGCCCCAATCTGGATCTGG 59.518 55.000 0.00 0.00 40.96 3.86
3112 3456 1.961394 CAATGCCCCAATCTGGATCTG 59.039 52.381 0.00 0.00 40.96 2.90
3113 3457 1.756690 GCAATGCCCCAATCTGGATCT 60.757 52.381 0.00 0.00 40.96 2.75
3114 3458 0.677842 GCAATGCCCCAATCTGGATC 59.322 55.000 0.00 0.00 40.96 3.36
3115 3459 0.761702 GGCAATGCCCCAATCTGGAT 60.762 55.000 14.47 0.00 44.06 3.41
3116 3460 1.381599 GGCAATGCCCCAATCTGGA 60.382 57.895 14.47 0.00 44.06 3.86
3117 3461 3.223226 GGCAATGCCCCAATCTGG 58.777 61.111 14.47 0.00 44.06 3.86
3127 3471 2.229690 ATTTCGGGCAGTGGCAATGC 62.230 55.000 29.99 29.99 43.71 3.56
3128 3472 1.066002 CTATTTCGGGCAGTGGCAATG 59.934 52.381 19.48 11.15 43.71 2.82
3129 3473 1.064758 TCTATTTCGGGCAGTGGCAAT 60.065 47.619 19.48 11.93 43.71 3.56
3130 3474 0.326595 TCTATTTCGGGCAGTGGCAA 59.673 50.000 19.48 4.64 43.71 4.52
3131 3475 0.107703 CTCTATTTCGGGCAGTGGCA 60.108 55.000 19.48 0.00 43.71 4.92
3132 3476 0.178068 TCTCTATTTCGGGCAGTGGC 59.822 55.000 8.47 8.47 40.13 5.01
3133 3477 1.808133 GCTCTCTATTTCGGGCAGTGG 60.808 57.143 0.00 0.00 0.00 4.00
3134 3478 1.134699 TGCTCTCTATTTCGGGCAGTG 60.135 52.381 0.00 0.00 0.00 3.66
3135 3479 1.195115 TGCTCTCTATTTCGGGCAGT 58.805 50.000 0.00 0.00 0.00 4.40
3136 3480 2.141517 CATGCTCTCTATTTCGGGCAG 58.858 52.381 0.00 0.00 33.23 4.85
3137 3481 1.811558 GCATGCTCTCTATTTCGGGCA 60.812 52.381 11.37 0.00 0.00 5.36
3138 3482 0.871057 GCATGCTCTCTATTTCGGGC 59.129 55.000 11.37 0.00 0.00 6.13
3139 3483 1.517242 GGCATGCTCTCTATTTCGGG 58.483 55.000 18.92 0.00 0.00 5.14
3140 3484 1.202687 TGGGCATGCTCTCTATTTCGG 60.203 52.381 20.42 0.00 0.00 4.30
3141 3485 2.245159 TGGGCATGCTCTCTATTTCG 57.755 50.000 20.42 0.00 0.00 3.46
3142 3486 2.292845 GCTTGGGCATGCTCTCTATTTC 59.707 50.000 20.42 0.00 38.54 2.17
3143 3487 2.305009 GCTTGGGCATGCTCTCTATTT 58.695 47.619 20.42 0.00 38.54 1.40
3144 3488 1.478288 GGCTTGGGCATGCTCTCTATT 60.478 52.381 20.42 0.00 40.87 1.73
3145 3489 0.110104 GGCTTGGGCATGCTCTCTAT 59.890 55.000 20.42 0.00 40.87 1.98
3146 3490 1.273986 TGGCTTGGGCATGCTCTCTA 61.274 55.000 20.42 3.02 40.87 2.43
3147 3491 2.274760 GGCTTGGGCATGCTCTCT 59.725 61.111 20.42 0.00 40.87 3.10
3148 3492 2.044650 TGGCTTGGGCATGCTCTC 60.045 61.111 20.42 7.79 40.87 3.20
3149 3493 2.362120 GTGGCTTGGGCATGCTCT 60.362 61.111 20.42 0.00 40.92 4.09
3150 3494 3.455469 GGTGGCTTGGGCATGCTC 61.455 66.667 18.92 15.59 40.92 4.26
3153 3497 2.757099 GAGGGTGGCTTGGGCATG 60.757 66.667 0.00 0.00 40.92 4.06
3154 3498 4.066139 GGAGGGTGGCTTGGGCAT 62.066 66.667 0.00 0.00 40.92 4.40
3158 3502 4.351054 AAGCGGAGGGTGGCTTGG 62.351 66.667 0.00 0.00 46.96 3.61
3161 3505 4.021925 GTGAAGCGGAGGGTGGCT 62.022 66.667 0.00 0.00 42.33 4.75
3163 3507 3.316573 GAGGTGAAGCGGAGGGTGG 62.317 68.421 0.00 0.00 0.00 4.61
3164 3508 2.266055 GAGGTGAAGCGGAGGGTG 59.734 66.667 0.00 0.00 0.00 4.61
3165 3509 3.003763 GGAGGTGAAGCGGAGGGT 61.004 66.667 0.00 0.00 0.00 4.34
3166 3510 3.787001 GGGAGGTGAAGCGGAGGG 61.787 72.222 0.00 0.00 0.00 4.30
3167 3511 4.148825 CGGGAGGTGAAGCGGAGG 62.149 72.222 0.00 0.00 0.00 4.30
3168 3512 4.821589 GCGGGAGGTGAAGCGGAG 62.822 72.222 0.00 0.00 0.00 4.63
3171 3515 4.473520 ATGGCGGGAGGTGAAGCG 62.474 66.667 0.00 0.00 0.00 4.68
3172 3516 2.514824 GATGGCGGGAGGTGAAGC 60.515 66.667 0.00 0.00 0.00 3.86
3173 3517 2.190578 GGATGGCGGGAGGTGAAG 59.809 66.667 0.00 0.00 0.00 3.02
3174 3518 2.609299 TGGATGGCGGGAGGTGAA 60.609 61.111 0.00 0.00 0.00 3.18
3175 3519 3.399181 GTGGATGGCGGGAGGTGA 61.399 66.667 0.00 0.00 0.00 4.02
3176 3520 3.716195 TGTGGATGGCGGGAGGTG 61.716 66.667 0.00 0.00 0.00 4.00
3177 3521 3.717294 GTGTGGATGGCGGGAGGT 61.717 66.667 0.00 0.00 0.00 3.85
3178 3522 4.838152 CGTGTGGATGGCGGGAGG 62.838 72.222 0.00 0.00 0.00 4.30
3179 3523 3.770040 TCGTGTGGATGGCGGGAG 61.770 66.667 0.00 0.00 0.00 4.30
3180 3524 4.077184 GTCGTGTGGATGGCGGGA 62.077 66.667 0.00 0.00 0.00 5.14
3182 3526 3.892740 TTGGTCGTGTGGATGGCGG 62.893 63.158 0.00 0.00 0.00 6.13
3183 3527 2.358125 TTGGTCGTGTGGATGGCG 60.358 61.111 0.00 0.00 0.00 5.69
3184 3528 3.578456 CTTGGTCGTGTGGATGGC 58.422 61.111 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.