Multiple sequence alignment - TraesCS2D01G163900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G163900 chr2D 100.000 3976 0 0 1 3976 108919452 108923427 0.000000e+00 7343.0
1 TraesCS2D01G163900 chr2B 89.993 2858 169 56 366 3168 158616402 158619197 0.000000e+00 3585.0
2 TraesCS2D01G163900 chr2B 93.112 813 47 4 3169 3975 158619239 158620048 0.000000e+00 1182.0
3 TraesCS2D01G163900 chr2A 91.667 2076 86 36 366 2404 104868032 104870057 0.000000e+00 2795.0
4 TraesCS2D01G163900 chr2A 94.169 806 41 2 3177 3976 104871015 104871820 0.000000e+00 1223.0
5 TraesCS2D01G163900 chr2A 92.857 784 31 5 2405 3178 104870214 104870982 0.000000e+00 1114.0
6 TraesCS2D01G163900 chr4D 94.020 301 17 1 1 300 353541089 353541389 4.680000e-124 455.0
7 TraesCS2D01G163900 chr4D 79.355 155 18 3 225 366 282773976 282774129 3.270000e-16 97.1
8 TraesCS2D01G163900 chr1D 88.114 387 25 5 1 366 487940843 487940457 1.310000e-119 440.0
9 TraesCS2D01G163900 chr1D 90.909 308 18 5 3 300 403544920 403545227 4.780000e-109 405.0
10 TraesCS2D01G163900 chr3D 87.371 388 28 6 1 367 568099670 568100057 3.670000e-115 425.0
11 TraesCS2D01G163900 chr5D 90.476 315 18 3 1 304 30975356 30975043 4.780000e-109 405.0
12 TraesCS2D01G163900 chr5D 89.644 309 21 7 1 300 97251651 97251345 2.240000e-102 383.0
13 TraesCS2D01G163900 chr5D 95.279 233 10 1 1 232 210774796 210775028 6.280000e-98 368.0
14 TraesCS2D01G163900 chr1B 90.645 310 18 8 1 300 230957581 230957889 6.190000e-108 401.0
15 TraesCS2D01G163900 chr1B 87.667 300 24 4 10 300 539649405 539649110 1.770000e-88 337.0
16 TraesCS2D01G163900 chr3A 90.354 311 19 5 1 300 729385230 729385540 8.010000e-107 398.0
17 TraesCS2D01G163900 chr3A 88.312 77 6 3 225 300 680347930 680348004 5.470000e-14 89.8
18 TraesCS2D01G163900 chr4A 88.764 267 10 4 121 367 719839486 719839752 3.860000e-80 309.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G163900 chr2D 108919452 108923427 3975 False 7343.000000 7343 100.000000 1 3976 1 chr2D.!!$F1 3975
1 TraesCS2D01G163900 chr2B 158616402 158620048 3646 False 2383.500000 3585 91.552500 366 3975 2 chr2B.!!$F1 3609
2 TraesCS2D01G163900 chr2A 104868032 104871820 3788 False 1710.666667 2795 92.897667 366 3976 3 chr2A.!!$F1 3610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
284 285 0.036875 CCCTTCTGACACACCCCTTC 59.963 60.0 0.0 0.00 0.00 3.46 F
285 286 0.320771 CCTTCTGACACACCCCTTCG 60.321 60.0 0.0 0.00 0.00 3.79 F
844 865 0.387878 CTTAGGCTCGCGCTCCATAG 60.388 60.0 16.7 10.08 36.09 2.23 F
1557 1604 0.942962 CTGGATTCTTCCGCTGATGC 59.057 55.0 0.0 0.00 45.89 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1387 1427 0.318699 TCAGAACACGAGAAGCCACG 60.319 55.000 0.00 0.0 0.00 4.94 R
1676 1726 1.421268 CATACCTAGCATGGCTCCCAA 59.579 52.381 0.00 0.0 40.44 4.12 R
2669 2881 0.603707 CTGGTGAGTGTGGCGAATGT 60.604 55.000 0.00 0.0 0.00 2.71 R
3200 3459 0.179100 ATCTTGGACTGTCGATGCGG 60.179 55.000 1.07 0.0 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.918076 TGTCATCTAAACCCTATGAGTTTTCT 58.082 34.615 0.00 0.00 38.37 2.52
26 27 8.041323 TGTCATCTAAACCCTATGAGTTTTCTC 58.959 37.037 0.00 0.00 46.33 2.87
44 45 9.760077 AGTTTTCTCGTATTGAGTTAAAAGAGA 57.240 29.630 0.00 0.00 45.46 3.10
45 46 9.794653 GTTTTCTCGTATTGAGTTAAAAGAGAC 57.205 33.333 0.00 0.00 45.46 3.36
46 47 9.537192 TTTTCTCGTATTGAGTTAAAAGAGACA 57.463 29.630 0.00 0.00 45.46 3.41
47 48 9.537192 TTTCTCGTATTGAGTTAAAAGAGACAA 57.463 29.630 0.00 0.00 45.46 3.18
48 49 9.706691 TTCTCGTATTGAGTTAAAAGAGACAAT 57.293 29.630 0.00 0.00 45.46 2.71
52 53 9.968743 CGTATTGAGTTAAAAGAGACAATAACC 57.031 33.333 0.00 0.00 33.91 2.85
86 87 9.803315 GTTGTATCATTTTCTCCTTATTTTCCC 57.197 33.333 0.00 0.00 0.00 3.97
87 88 9.540538 TTGTATCATTTTCTCCTTATTTTCCCA 57.459 29.630 0.00 0.00 0.00 4.37
88 89 8.966868 TGTATCATTTTCTCCTTATTTTCCCAC 58.033 33.333 0.00 0.00 0.00 4.61
89 90 9.190317 GTATCATTTTCTCCTTATTTTCCCACT 57.810 33.333 0.00 0.00 0.00 4.00
90 91 7.466746 TCATTTTCTCCTTATTTTCCCACTG 57.533 36.000 0.00 0.00 0.00 3.66
91 92 6.437162 TCATTTTCTCCTTATTTTCCCACTGG 59.563 38.462 0.00 0.00 0.00 4.00
92 93 4.316025 TTCTCCTTATTTTCCCACTGGG 57.684 45.455 7.97 7.97 46.11 4.45
93 94 3.265489 TCTCCTTATTTTCCCACTGGGT 58.735 45.455 14.25 0.00 44.74 4.51
94 95 3.660669 TCTCCTTATTTTCCCACTGGGTT 59.339 43.478 14.25 1.03 44.74 4.11
95 96 4.107311 TCTCCTTATTTTCCCACTGGGTTT 59.893 41.667 14.25 0.69 44.74 3.27
96 97 4.156477 TCCTTATTTTCCCACTGGGTTTG 58.844 43.478 14.25 0.00 44.74 2.93
97 98 4.140900 TCCTTATTTTCCCACTGGGTTTGA 60.141 41.667 14.25 0.00 44.74 2.69
98 99 4.591072 CCTTATTTTCCCACTGGGTTTGAA 59.409 41.667 14.25 5.52 44.74 2.69
99 100 5.279456 CCTTATTTTCCCACTGGGTTTGAAG 60.279 44.000 14.25 11.39 44.74 3.02
100 101 2.080654 TTTCCCACTGGGTTTGAAGG 57.919 50.000 14.25 0.00 44.74 3.46
101 102 1.227249 TTCCCACTGGGTTTGAAGGA 58.773 50.000 14.25 0.00 44.74 3.36
102 103 0.771127 TCCCACTGGGTTTGAAGGAG 59.229 55.000 14.25 0.00 44.74 3.69
103 104 0.478507 CCCACTGGGTTTGAAGGAGT 59.521 55.000 5.85 0.00 38.25 3.85
104 105 1.133482 CCCACTGGGTTTGAAGGAGTT 60.133 52.381 5.85 0.00 38.25 3.01
105 106 2.666317 CCACTGGGTTTGAAGGAGTTT 58.334 47.619 0.00 0.00 0.00 2.66
106 107 3.031013 CCACTGGGTTTGAAGGAGTTTT 58.969 45.455 0.00 0.00 0.00 2.43
107 108 4.211920 CCACTGGGTTTGAAGGAGTTTTA 58.788 43.478 0.00 0.00 0.00 1.52
108 109 4.278419 CCACTGGGTTTGAAGGAGTTTTAG 59.722 45.833 0.00 0.00 0.00 1.85
109 110 3.889538 ACTGGGTTTGAAGGAGTTTTAGC 59.110 43.478 0.00 0.00 0.00 3.09
110 111 3.888930 CTGGGTTTGAAGGAGTTTTAGCA 59.111 43.478 0.00 0.00 0.00 3.49
111 112 4.282496 TGGGTTTGAAGGAGTTTTAGCAA 58.718 39.130 0.00 0.00 0.00 3.91
112 113 4.098807 TGGGTTTGAAGGAGTTTTAGCAAC 59.901 41.667 0.00 0.00 0.00 4.17
113 114 4.098807 GGGTTTGAAGGAGTTTTAGCAACA 59.901 41.667 0.00 0.00 0.00 3.33
114 115 5.221441 GGGTTTGAAGGAGTTTTAGCAACAT 60.221 40.000 0.00 0.00 0.00 2.71
115 116 6.015772 GGGTTTGAAGGAGTTTTAGCAACATA 60.016 38.462 0.00 0.00 0.00 2.29
116 117 7.309805 GGGTTTGAAGGAGTTTTAGCAACATAT 60.310 37.037 0.00 0.00 0.00 1.78
117 118 7.755373 GGTTTGAAGGAGTTTTAGCAACATATC 59.245 37.037 0.00 0.00 0.00 1.63
118 119 7.994425 TTGAAGGAGTTTTAGCAACATATCA 57.006 32.000 0.00 0.00 0.00 2.15
119 120 7.994425 TGAAGGAGTTTTAGCAACATATCAA 57.006 32.000 0.00 0.00 0.00 2.57
120 121 8.402798 TGAAGGAGTTTTAGCAACATATCAAA 57.597 30.769 0.00 0.00 0.00 2.69
121 122 8.296713 TGAAGGAGTTTTAGCAACATATCAAAC 58.703 33.333 0.00 0.00 0.00 2.93
122 123 7.759489 AGGAGTTTTAGCAACATATCAAACA 57.241 32.000 0.00 0.00 0.00 2.83
123 124 7.593825 AGGAGTTTTAGCAACATATCAAACAC 58.406 34.615 0.00 0.00 0.00 3.32
124 125 6.806739 GGAGTTTTAGCAACATATCAAACACC 59.193 38.462 0.00 0.00 30.95 4.16
125 126 7.309194 GGAGTTTTAGCAACATATCAAACACCT 60.309 37.037 0.00 0.00 34.15 4.00
126 127 8.630054 AGTTTTAGCAACATATCAAACACCTA 57.370 30.769 0.00 0.00 0.00 3.08
127 128 9.243105 AGTTTTAGCAACATATCAAACACCTAT 57.757 29.630 0.00 0.00 0.00 2.57
128 129 9.503427 GTTTTAGCAACATATCAAACACCTATC 57.497 33.333 0.00 0.00 0.00 2.08
129 130 9.461312 TTTTAGCAACATATCAAACACCTATCT 57.539 29.630 0.00 0.00 0.00 1.98
130 131 8.662781 TTAGCAACATATCAAACACCTATCTC 57.337 34.615 0.00 0.00 0.00 2.75
131 132 6.058183 AGCAACATATCAAACACCTATCTCC 58.942 40.000 0.00 0.00 0.00 3.71
132 133 6.058183 GCAACATATCAAACACCTATCTCCT 58.942 40.000 0.00 0.00 0.00 3.69
133 134 6.203723 GCAACATATCAAACACCTATCTCCTC 59.796 42.308 0.00 0.00 0.00 3.71
134 135 7.275183 CAACATATCAAACACCTATCTCCTCA 58.725 38.462 0.00 0.00 0.00 3.86
135 136 7.623999 ACATATCAAACACCTATCTCCTCAT 57.376 36.000 0.00 0.00 0.00 2.90
136 137 8.727100 ACATATCAAACACCTATCTCCTCATA 57.273 34.615 0.00 0.00 0.00 2.15
137 138 9.331466 ACATATCAAACACCTATCTCCTCATAT 57.669 33.333 0.00 0.00 0.00 1.78
141 142 9.927081 ATCAAACACCTATCTCCTCATATTTTT 57.073 29.630 0.00 0.00 0.00 1.94
159 160 4.479786 TTTTTCCACAGGGTTTTTGGAG 57.520 40.909 0.00 0.00 40.54 3.86
160 161 2.080654 TTCCACAGGGTTTTTGGAGG 57.919 50.000 0.00 0.00 40.54 4.30
161 162 1.227249 TCCACAGGGTTTTTGGAGGA 58.773 50.000 0.00 0.00 34.35 3.71
162 163 1.144913 TCCACAGGGTTTTTGGAGGAG 59.855 52.381 0.00 0.00 34.35 3.69
163 164 0.961753 CACAGGGTTTTTGGAGGAGC 59.038 55.000 0.00 0.00 0.00 4.70
164 165 0.178961 ACAGGGTTTTTGGAGGAGCC 60.179 55.000 0.00 0.00 37.10 4.70
165 166 0.113190 CAGGGTTTTTGGAGGAGCCT 59.887 55.000 0.00 0.00 41.68 4.58
166 167 0.860457 AGGGTTTTTGGAGGAGCCTT 59.140 50.000 0.00 0.00 38.03 4.35
167 168 1.220493 AGGGTTTTTGGAGGAGCCTTT 59.780 47.619 0.00 0.00 38.03 3.11
168 169 2.047061 GGGTTTTTGGAGGAGCCTTTT 58.953 47.619 0.00 0.00 37.63 2.27
169 170 2.037251 GGGTTTTTGGAGGAGCCTTTTC 59.963 50.000 0.00 0.00 37.63 2.29
170 171 2.698274 GGTTTTTGGAGGAGCCTTTTCA 59.302 45.455 0.00 0.00 37.63 2.69
171 172 3.133901 GGTTTTTGGAGGAGCCTTTTCAA 59.866 43.478 0.00 0.00 37.63 2.69
172 173 4.371786 GTTTTTGGAGGAGCCTTTTCAAG 58.628 43.478 0.00 0.00 37.63 3.02
173 174 3.593442 TTTGGAGGAGCCTTTTCAAGA 57.407 42.857 0.00 0.00 37.63 3.02
174 175 3.814504 TTGGAGGAGCCTTTTCAAGAT 57.185 42.857 0.00 0.00 37.63 2.40
175 176 3.077484 TGGAGGAGCCTTTTCAAGATG 57.923 47.619 0.00 0.00 37.63 2.90
176 177 2.644299 TGGAGGAGCCTTTTCAAGATGA 59.356 45.455 0.00 0.00 37.63 2.92
177 178 3.267812 TGGAGGAGCCTTTTCAAGATGAT 59.732 43.478 0.00 0.00 37.63 2.45
178 179 3.631227 GGAGGAGCCTTTTCAAGATGATG 59.369 47.826 0.00 0.00 0.00 3.07
179 180 4.521146 GAGGAGCCTTTTCAAGATGATGA 58.479 43.478 0.00 0.00 0.00 2.92
180 181 5.126699 AGGAGCCTTTTCAAGATGATGAT 57.873 39.130 0.00 0.00 0.00 2.45
181 182 6.257994 AGGAGCCTTTTCAAGATGATGATA 57.742 37.500 0.00 0.00 0.00 2.15
182 183 6.060788 AGGAGCCTTTTCAAGATGATGATAC 58.939 40.000 0.00 0.00 0.00 2.24
183 184 6.060788 GGAGCCTTTTCAAGATGATGATACT 58.939 40.000 0.00 0.00 0.00 2.12
184 185 6.545298 GGAGCCTTTTCAAGATGATGATACTT 59.455 38.462 0.00 0.00 0.00 2.24
185 186 7.716998 GGAGCCTTTTCAAGATGATGATACTTA 59.283 37.037 0.00 0.00 0.00 2.24
186 187 8.443953 AGCCTTTTCAAGATGATGATACTTAC 57.556 34.615 0.00 0.00 0.00 2.34
187 188 8.049117 AGCCTTTTCAAGATGATGATACTTACA 58.951 33.333 0.00 0.00 0.00 2.41
188 189 8.125448 GCCTTTTCAAGATGATGATACTTACAC 58.875 37.037 0.00 0.00 0.00 2.90
189 190 9.388506 CCTTTTCAAGATGATGATACTTACACT 57.611 33.333 0.00 0.00 0.00 3.55
206 207 7.556844 ACTTACACTAACAAGTATGGATCAGG 58.443 38.462 0.00 0.00 33.29 3.86
207 208 5.359194 ACACTAACAAGTATGGATCAGGG 57.641 43.478 0.00 0.00 0.00 4.45
208 209 4.164221 ACACTAACAAGTATGGATCAGGGG 59.836 45.833 0.00 0.00 0.00 4.79
209 210 3.716872 ACTAACAAGTATGGATCAGGGGG 59.283 47.826 0.00 0.00 0.00 5.40
210 211 2.587060 ACAAGTATGGATCAGGGGGA 57.413 50.000 0.00 0.00 0.00 4.81
211 212 2.412591 ACAAGTATGGATCAGGGGGAG 58.587 52.381 0.00 0.00 0.00 4.30
212 213 2.293856 ACAAGTATGGATCAGGGGGAGT 60.294 50.000 0.00 0.00 0.00 3.85
213 214 2.105477 CAAGTATGGATCAGGGGGAGTG 59.895 54.545 0.00 0.00 0.00 3.51
214 215 1.295292 AGTATGGATCAGGGGGAGTGT 59.705 52.381 0.00 0.00 0.00 3.55
215 216 2.127708 GTATGGATCAGGGGGAGTGTT 58.872 52.381 0.00 0.00 0.00 3.32
216 217 2.587060 ATGGATCAGGGGGAGTGTTA 57.413 50.000 0.00 0.00 0.00 2.41
217 218 1.879575 TGGATCAGGGGGAGTGTTAG 58.120 55.000 0.00 0.00 0.00 2.34
218 219 1.132500 GGATCAGGGGGAGTGTTAGG 58.868 60.000 0.00 0.00 0.00 2.69
219 220 1.344087 GGATCAGGGGGAGTGTTAGGA 60.344 57.143 0.00 0.00 0.00 2.94
220 221 2.695585 GATCAGGGGGAGTGTTAGGAT 58.304 52.381 0.00 0.00 0.00 3.24
221 222 2.661176 TCAGGGGGAGTGTTAGGATT 57.339 50.000 0.00 0.00 0.00 3.01
222 223 2.929301 TCAGGGGGAGTGTTAGGATTT 58.071 47.619 0.00 0.00 0.00 2.17
223 224 4.083080 TCAGGGGGAGTGTTAGGATTTA 57.917 45.455 0.00 0.00 0.00 1.40
224 225 4.440808 TCAGGGGGAGTGTTAGGATTTAA 58.559 43.478 0.00 0.00 0.00 1.52
225 226 5.043762 TCAGGGGGAGTGTTAGGATTTAAT 58.956 41.667 0.00 0.00 0.00 1.40
226 227 5.494706 TCAGGGGGAGTGTTAGGATTTAATT 59.505 40.000 0.00 0.00 0.00 1.40
227 228 6.679303 TCAGGGGGAGTGTTAGGATTTAATTA 59.321 38.462 0.00 0.00 0.00 1.40
228 229 7.184936 TCAGGGGGAGTGTTAGGATTTAATTAA 59.815 37.037 0.00 0.00 0.00 1.40
229 230 8.004801 CAGGGGGAGTGTTAGGATTTAATTAAT 58.995 37.037 0.00 0.00 0.00 1.40
230 231 8.225416 AGGGGGAGTGTTAGGATTTAATTAATC 58.775 37.037 0.00 0.00 41.64 1.75
249 250 9.475620 AATTAATCCCTACTTTTCCTAACCAAG 57.524 33.333 0.00 0.00 0.00 3.61
251 252 3.009805 TCCCTACTTTTCCTAACCAAGGC 59.990 47.826 0.00 0.00 46.10 4.35
252 253 3.007635 CCTACTTTTCCTAACCAAGGCG 58.992 50.000 0.00 0.00 46.10 5.52
253 254 1.905637 ACTTTTCCTAACCAAGGCGG 58.094 50.000 0.00 0.00 46.10 6.13
268 269 4.003788 CGGTTGCCTCGTGTCCCT 62.004 66.667 0.00 0.00 0.00 4.20
269 270 2.430367 GGTTGCCTCGTGTCCCTT 59.570 61.111 0.00 0.00 0.00 3.95
270 271 1.671379 GGTTGCCTCGTGTCCCTTC 60.671 63.158 0.00 0.00 0.00 3.46
271 272 1.371558 GTTGCCTCGTGTCCCTTCT 59.628 57.895 0.00 0.00 0.00 2.85
272 273 0.951040 GTTGCCTCGTGTCCCTTCTG 60.951 60.000 0.00 0.00 0.00 3.02
273 274 1.118965 TTGCCTCGTGTCCCTTCTGA 61.119 55.000 0.00 0.00 0.00 3.27
274 275 1.079750 GCCTCGTGTCCCTTCTGAC 60.080 63.158 0.00 0.00 35.77 3.51
275 276 1.816863 GCCTCGTGTCCCTTCTGACA 61.817 60.000 0.00 0.00 42.75 3.58
280 281 2.142220 TGTCCCTTCTGACACACCC 58.858 57.895 0.00 0.00 40.22 4.61
281 282 1.375326 GTCCCTTCTGACACACCCC 59.625 63.158 0.00 0.00 35.29 4.95
282 283 1.128188 GTCCCTTCTGACACACCCCT 61.128 60.000 0.00 0.00 35.29 4.79
283 284 0.401395 TCCCTTCTGACACACCCCTT 60.401 55.000 0.00 0.00 0.00 3.95
284 285 0.036875 CCCTTCTGACACACCCCTTC 59.963 60.000 0.00 0.00 0.00 3.46
285 286 0.320771 CCTTCTGACACACCCCTTCG 60.321 60.000 0.00 0.00 0.00 3.79
286 287 0.320771 CTTCTGACACACCCCTTCGG 60.321 60.000 0.00 0.00 37.81 4.30
304 305 7.171630 CCTTCGGGGGCTATATATATACATC 57.828 44.000 0.00 0.00 0.00 3.06
305 306 6.724441 CCTTCGGGGGCTATATATATACATCA 59.276 42.308 0.00 0.00 0.00 3.07
306 307 7.234782 CCTTCGGGGGCTATATATATACATCAA 59.765 40.741 0.00 0.00 0.00 2.57
307 308 8.736097 TTCGGGGGCTATATATATACATCAAT 57.264 34.615 0.00 0.00 0.00 2.57
308 309 8.134202 TCGGGGGCTATATATATACATCAATG 57.866 38.462 0.00 0.00 0.00 2.82
309 310 7.953493 TCGGGGGCTATATATATACATCAATGA 59.047 37.037 0.00 0.00 0.00 2.57
310 311 8.253810 CGGGGGCTATATATATACATCAATGAG 58.746 40.741 0.00 0.00 0.00 2.90
311 312 8.543774 GGGGGCTATATATATACATCAATGAGG 58.456 40.741 0.00 0.00 0.00 3.86
312 313 9.326489 GGGGCTATATATATACATCAATGAGGA 57.674 37.037 0.58 0.00 0.00 3.71
322 323 5.233083 ACATCAATGAGGAGAACTGTTCA 57.767 39.130 21.50 2.46 0.00 3.18
323 324 4.999950 ACATCAATGAGGAGAACTGTTCAC 59.000 41.667 21.50 15.34 0.00 3.18
324 325 4.963318 TCAATGAGGAGAACTGTTCACT 57.037 40.909 21.50 17.88 0.00 3.41
325 326 5.296151 TCAATGAGGAGAACTGTTCACTT 57.704 39.130 21.50 12.34 0.00 3.16
326 327 5.684704 TCAATGAGGAGAACTGTTCACTTT 58.315 37.500 21.50 8.80 0.00 2.66
327 328 6.826668 TCAATGAGGAGAACTGTTCACTTTA 58.173 36.000 21.50 9.73 0.00 1.85
328 329 6.706270 TCAATGAGGAGAACTGTTCACTTTAC 59.294 38.462 21.50 2.68 0.00 2.01
329 330 5.607939 TGAGGAGAACTGTTCACTTTACA 57.392 39.130 21.50 10.79 0.00 2.41
330 331 6.174720 TGAGGAGAACTGTTCACTTTACAT 57.825 37.500 21.50 0.00 0.00 2.29
331 332 6.223852 TGAGGAGAACTGTTCACTTTACATC 58.776 40.000 21.50 8.18 0.00 3.06
332 333 6.042093 TGAGGAGAACTGTTCACTTTACATCT 59.958 38.462 21.50 6.80 0.00 2.90
333 334 6.831976 AGGAGAACTGTTCACTTTACATCTT 58.168 36.000 21.50 2.67 0.00 2.40
334 335 7.283329 AGGAGAACTGTTCACTTTACATCTTT 58.717 34.615 21.50 0.00 0.00 2.52
335 336 7.227512 AGGAGAACTGTTCACTTTACATCTTTG 59.772 37.037 21.50 0.00 0.00 2.77
336 337 7.012421 GGAGAACTGTTCACTTTACATCTTTGT 59.988 37.037 21.50 0.00 39.98 2.83
337 338 7.920738 AGAACTGTTCACTTTACATCTTTGTC 58.079 34.615 21.50 0.00 37.28 3.18
338 339 7.770897 AGAACTGTTCACTTTACATCTTTGTCT 59.229 33.333 21.50 0.00 37.28 3.41
339 340 8.958119 AACTGTTCACTTTACATCTTTGTCTA 57.042 30.769 0.00 0.00 37.28 2.59
340 341 9.561069 AACTGTTCACTTTACATCTTTGTCTAT 57.439 29.630 0.00 0.00 37.28 1.98
341 342 9.561069 ACTGTTCACTTTACATCTTTGTCTATT 57.439 29.630 0.00 0.00 37.28 1.73
342 343 9.817365 CTGTTCACTTTACATCTTTGTCTATTG 57.183 33.333 0.00 0.00 37.28 1.90
343 344 9.337396 TGTTCACTTTACATCTTTGTCTATTGT 57.663 29.630 0.00 0.00 37.28 2.71
344 345 9.813080 GTTCACTTTACATCTTTGTCTATTGTC 57.187 33.333 0.00 0.00 37.28 3.18
345 346 9.778741 TTCACTTTACATCTTTGTCTATTGTCT 57.221 29.630 0.00 0.00 37.28 3.41
346 347 9.424319 TCACTTTACATCTTTGTCTATTGTCTC 57.576 33.333 0.00 0.00 37.28 3.36
347 348 9.429359 CACTTTACATCTTTGTCTATTGTCTCT 57.571 33.333 0.00 0.00 37.28 3.10
348 349 9.646427 ACTTTACATCTTTGTCTATTGTCTCTC 57.354 33.333 0.00 0.00 37.28 3.20
349 350 9.092876 CTTTACATCTTTGTCTATTGTCTCTCC 57.907 37.037 0.00 0.00 37.28 3.71
350 351 6.865834 ACATCTTTGTCTATTGTCTCTCCT 57.134 37.500 0.00 0.00 0.00 3.69
351 352 7.251321 ACATCTTTGTCTATTGTCTCTCCTT 57.749 36.000 0.00 0.00 0.00 3.36
352 353 7.327214 ACATCTTTGTCTATTGTCTCTCCTTC 58.673 38.462 0.00 0.00 0.00 3.46
353 354 7.180051 ACATCTTTGTCTATTGTCTCTCCTTCT 59.820 37.037 0.00 0.00 0.00 2.85
354 355 7.164230 TCTTTGTCTATTGTCTCTCCTTCTC 57.836 40.000 0.00 0.00 0.00 2.87
355 356 6.951198 TCTTTGTCTATTGTCTCTCCTTCTCT 59.049 38.462 0.00 0.00 0.00 3.10
356 357 8.110271 TCTTTGTCTATTGTCTCTCCTTCTCTA 58.890 37.037 0.00 0.00 0.00 2.43
357 358 7.633193 TTGTCTATTGTCTCTCCTTCTCTAC 57.367 40.000 0.00 0.00 0.00 2.59
358 359 6.964464 TGTCTATTGTCTCTCCTTCTCTACT 58.036 40.000 0.00 0.00 0.00 2.57
359 360 7.051623 TGTCTATTGTCTCTCCTTCTCTACTC 58.948 42.308 0.00 0.00 0.00 2.59
360 361 6.202188 GTCTATTGTCTCTCCTTCTCTACTCG 59.798 46.154 0.00 0.00 0.00 4.18
361 362 4.554960 TTGTCTCTCCTTCTCTACTCGA 57.445 45.455 0.00 0.00 0.00 4.04
362 363 4.554960 TGTCTCTCCTTCTCTACTCGAA 57.445 45.455 0.00 0.00 0.00 3.71
363 364 4.907809 TGTCTCTCCTTCTCTACTCGAAA 58.092 43.478 0.00 0.00 0.00 3.46
364 365 4.696402 TGTCTCTCCTTCTCTACTCGAAAC 59.304 45.833 0.00 0.00 0.00 2.78
715 730 3.307906 CCGTTGGACTCCCCGTCA 61.308 66.667 0.00 0.00 44.68 4.35
738 753 0.720232 TCCCCCTACTTAGCTTCCCA 59.280 55.000 0.00 0.00 0.00 4.37
753 768 2.283809 CCATCCCCGTCTCTCCCT 59.716 66.667 0.00 0.00 0.00 4.20
805 826 1.826096 GAGGAGAACCACAGGTAGACC 59.174 57.143 0.00 0.00 33.12 3.85
836 857 2.959071 GCAGCTCTTAGGCTCGCG 60.959 66.667 0.00 0.00 41.00 5.87
840 861 2.026879 CTCTTAGGCTCGCGCTCC 59.973 66.667 5.56 4.53 36.09 4.70
841 862 2.754254 TCTTAGGCTCGCGCTCCA 60.754 61.111 16.70 2.86 36.09 3.86
842 863 2.081425 CTCTTAGGCTCGCGCTCCAT 62.081 60.000 16.70 1.68 36.09 3.41
844 865 0.387878 CTTAGGCTCGCGCTCCATAG 60.388 60.000 16.70 10.08 36.09 2.23
885 908 2.596904 ATTGGAGGTAATCGTCGTGG 57.403 50.000 0.00 0.00 0.00 4.94
891 914 4.081531 TGGAGGTAATCGTCGTGGTTTATT 60.082 41.667 0.00 0.00 0.00 1.40
894 917 6.413018 AGGTAATCGTCGTGGTTTATTTTC 57.587 37.500 0.00 0.00 0.00 2.29
896 919 6.312180 AGGTAATCGTCGTGGTTTATTTTCTC 59.688 38.462 0.00 0.00 0.00 2.87
900 923 5.159209 TCGTCGTGGTTTATTTTCTCTCTC 58.841 41.667 0.00 0.00 0.00 3.20
901 924 4.030306 CGTCGTGGTTTATTTTCTCTCTCG 59.970 45.833 0.00 0.00 0.00 4.04
911 934 9.535270 GTTTATTTTCTCTCTCGATGTTCTTTG 57.465 33.333 0.00 0.00 0.00 2.77
913 936 5.468540 TTTCTCTCTCGATGTTCTTTGGA 57.531 39.130 0.00 0.00 0.00 3.53
914 937 5.468540 TTCTCTCTCGATGTTCTTTGGAA 57.531 39.130 0.00 0.00 0.00 3.53
917 940 6.467677 TCTCTCTCGATGTTCTTTGGAATTT 58.532 36.000 0.00 0.00 33.71 1.82
931 954 1.595093 GAATTTGTGCTGGGTCGGGG 61.595 60.000 0.00 0.00 0.00 5.73
1050 1088 2.125753 GAGAGGCTGCACGTCCAG 60.126 66.667 0.88 0.88 33.49 3.86
1071 1109 3.324930 TGAGCTCTGGGGCCTGTG 61.325 66.667 16.19 0.00 0.00 3.66
1122 1160 3.004734 CGAACAAGAAAATGAACTGGCCT 59.995 43.478 3.32 0.00 0.00 5.19
1204 1243 5.801350 TCGAGCACCATCTTTTTCAATAG 57.199 39.130 0.00 0.00 0.00 1.73
1366 1406 4.711355 CCATTCCATTGGTAATCTTGTGGT 59.289 41.667 1.86 0.00 31.74 4.16
1381 1421 3.202829 TGTGGTTGTGGAAGAGGTAAC 57.797 47.619 0.00 0.00 0.00 2.50
1427 1468 5.320723 TGATTTCGTGCGCTACAAATTTAG 58.679 37.500 9.73 0.00 0.00 1.85
1448 1490 2.616376 GTGTGTGCAATAGTGTTCACCA 59.384 45.455 13.78 3.94 33.05 4.17
1474 1520 4.806247 GTGTCTTATGATCCTGGAAACTCG 59.194 45.833 0.00 0.00 0.00 4.18
1487 1533 3.322541 TGGAAACTCGTACCACTTCATGA 59.677 43.478 0.00 0.00 0.00 3.07
1511 1557 4.023536 TGAACCACCGCAAAGATAAAACTC 60.024 41.667 0.00 0.00 0.00 3.01
1527 1573 3.611766 AACTCTCCCGTACAATTCTGG 57.388 47.619 0.00 0.00 0.00 3.86
1528 1574 1.207329 ACTCTCCCGTACAATTCTGGC 59.793 52.381 0.00 0.00 0.00 4.85
1540 1586 2.414994 ATTCTGGCATCACCTGACTG 57.585 50.000 0.00 0.00 45.31 3.51
1550 1597 1.550524 TCACCTGACTGGATTCTTCCG 59.449 52.381 5.22 0.00 45.89 4.30
1557 1604 0.942962 CTGGATTCTTCCGCTGATGC 59.057 55.000 0.00 0.00 45.89 3.91
1594 1641 2.986311 TGTCGTGAACAGGAAGTGC 58.014 52.632 0.00 0.00 32.81 4.40
1601 1651 1.686587 TGAACAGGAAGTGCGAGAAGA 59.313 47.619 0.00 0.00 0.00 2.87
1602 1652 2.102420 TGAACAGGAAGTGCGAGAAGAA 59.898 45.455 0.00 0.00 0.00 2.52
1603 1653 2.447244 ACAGGAAGTGCGAGAAGAAG 57.553 50.000 0.00 0.00 0.00 2.85
1654 1704 1.959226 GAAACGGAAGCGAGGCACA 60.959 57.895 0.00 0.00 0.00 4.57
1676 1726 6.652481 CACACAGAATGACCTCTTTAATGAGT 59.348 38.462 15.14 5.68 39.69 3.41
1766 1817 2.262292 GGTGCCACTACCGCGTTA 59.738 61.111 4.92 0.00 0.00 3.18
1968 2020 6.563422 TCACTATGCAAGGCAAATTTACATC 58.437 36.000 0.00 0.00 43.62 3.06
1971 2023 4.717233 TGCAAGGCAAATTTACATCGAT 57.283 36.364 0.00 0.00 34.76 3.59
2036 2089 5.842907 TGTATCAAATCTACAGTCCCATCG 58.157 41.667 0.00 0.00 0.00 3.84
2080 2133 8.579682 ACTTTCTAAAACAATGCAAACATCTC 57.420 30.769 0.00 0.00 34.62 2.75
2232 2285 9.092876 GAATCTCACTATGTAAGACCTTTTGAG 57.907 37.037 0.00 0.00 0.00 3.02
2263 2316 7.378995 GCAACTCTATTCAGCAATTTGATGATC 59.621 37.037 17.27 0.00 42.81 2.92
2655 2867 0.988832 ACCTTATCCCACAAGCGGAA 59.011 50.000 0.00 0.00 31.75 4.30
2669 2881 1.349688 AGCGGAATGTTCCCAGTACAA 59.650 47.619 6.22 0.00 44.67 2.41
2681 2893 1.196808 CCAGTACAACATTCGCCACAC 59.803 52.381 0.00 0.00 0.00 3.82
2711 2923 1.300620 CACCTCGACGGCACTTTCA 60.301 57.895 0.00 0.00 35.61 2.69
2836 3048 4.045334 ACAAGACCAGGGGATTTCCAATAA 59.955 41.667 0.00 0.00 37.91 1.40
2948 3160 5.177696 GCAACAATATAGTAGTGGCACTAGC 59.822 44.000 26.87 20.00 34.59 3.42
2961 3173 0.179161 CACTAGCGAGGAAGACGGTG 60.179 60.000 0.00 0.00 41.38 4.94
2962 3174 0.608582 ACTAGCGAGGAAGACGGTGT 60.609 55.000 0.00 0.00 41.38 4.16
2963 3175 0.179161 CTAGCGAGGAAGACGGTGTG 60.179 60.000 0.00 0.00 41.38 3.82
3002 3214 2.774439 ACACAATTTGCTTCACCGTC 57.226 45.000 0.00 0.00 0.00 4.79
3006 3218 2.948979 ACAATTTGCTTCACCGTCTGAA 59.051 40.909 0.00 0.00 36.46 3.02
3031 3244 4.649674 AGTTTCTTAGTGTGAGTGGAGTGA 59.350 41.667 0.00 0.00 0.00 3.41
3050 3269 5.982356 AGTGACTGCAACAGATACATATGT 58.018 37.500 13.93 13.93 35.18 2.29
3053 3272 5.985530 TGACTGCAACAGATACATATGTAGC 59.014 40.000 20.92 20.92 37.19 3.58
3072 3291 5.929992 TGTAGCTGTGTATGTAAACTCCAAC 59.070 40.000 0.00 0.00 0.00 3.77
3081 3300 2.370849 TGTAAACTCCAACCTGTCTCCC 59.629 50.000 0.00 0.00 0.00 4.30
3133 3352 7.262772 GTGATAATAAAAACTGCTTTACCCCC 58.737 38.462 0.00 0.00 0.00 5.40
3175 3394 3.628942 TGCACATGTATGGATTGCTCTTC 59.371 43.478 0.00 0.00 34.18 2.87
3189 3448 1.793258 CTCTTCAGTCACCTGTGCAG 58.207 55.000 0.00 0.00 39.82 4.41
3200 3459 6.036517 CAGTCACCTGTGCAGAAGTATATTTC 59.963 42.308 0.02 0.00 33.80 2.17
3225 3490 4.678044 GCATCGACAGTCCAAGATCAGTTA 60.678 45.833 0.00 0.00 0.00 2.24
3241 3506 2.869801 CAGTTAGTGGTCGTTGCTTCAA 59.130 45.455 0.00 0.00 0.00 2.69
3262 3527 5.985530 TCAATTCAGCACGGTTAGATATCTG 59.014 40.000 15.79 0.79 0.00 2.90
3273 3538 5.278561 CGGTTAGATATCTGAGGAAGACACC 60.279 48.000 15.79 1.46 37.88 4.16
3281 3546 3.965888 AGGAAGACACCTCAATGGC 57.034 52.632 0.00 0.00 40.22 4.40
3288 3553 2.282391 ACCTCAATGGCGCTGCAA 60.282 55.556 7.64 0.00 40.22 4.08
3327 3592 0.968405 TGACCATTTTCTGCCCTTGC 59.032 50.000 0.00 0.00 38.26 4.01
3337 3602 2.830370 GCCCTTGCGAATCCCTGG 60.830 66.667 0.00 0.00 0.00 4.45
3361 3626 2.290641 TGTGCTATTTCATCCCAACGGT 60.291 45.455 0.00 0.00 0.00 4.83
3364 3629 2.872858 GCTATTTCATCCCAACGGTCTC 59.127 50.000 0.00 0.00 0.00 3.36
3368 3633 1.221840 CATCCCAACGGTCTCCCAG 59.778 63.158 0.00 0.00 0.00 4.45
3453 3718 4.954118 TGCACCGTCCTCCCCAGT 62.954 66.667 0.00 0.00 0.00 4.00
3750 4015 2.300433 TGCTGCATTGAGTGAAACAGT 58.700 42.857 0.00 0.00 41.43 3.55
3756 4021 6.624423 GCTGCATTGAGTGAAACAGTGATATT 60.624 38.462 0.00 0.00 41.43 1.28
3840 4105 2.249337 CTGTCGCGCATTGCATAAAAA 58.751 42.857 8.75 0.00 46.97 1.94
3926 4191 3.144506 CAGTGTCAAGCTCAAGACCAAT 58.855 45.455 10.32 0.00 33.89 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.918076 AGAAAACTCATAGGGTTTAGATGACA 58.082 34.615 0.00 0.00 36.09 3.58
1 2 7.222999 CGAGAAAACTCATAGGGTTTAGATGAC 59.777 40.741 0.00 0.00 36.09 3.06
2 3 7.093465 ACGAGAAAACTCATAGGGTTTAGATGA 60.093 37.037 0.00 0.00 36.09 2.92
3 4 7.042335 ACGAGAAAACTCATAGGGTTTAGATG 58.958 38.462 0.00 0.00 36.09 2.90
4 5 7.184067 ACGAGAAAACTCATAGGGTTTAGAT 57.816 36.000 0.00 0.00 36.09 1.98
5 6 6.600882 ACGAGAAAACTCATAGGGTTTAGA 57.399 37.500 0.00 0.00 36.09 2.10
6 7 8.818057 CAATACGAGAAAACTCATAGGGTTTAG 58.182 37.037 0.00 0.00 36.09 1.85
7 8 8.533657 TCAATACGAGAAAACTCATAGGGTTTA 58.466 33.333 0.00 0.00 36.09 2.01
8 9 7.391620 TCAATACGAGAAAACTCATAGGGTTT 58.608 34.615 0.00 0.00 38.35 3.27
9 10 6.942976 TCAATACGAGAAAACTCATAGGGTT 58.057 36.000 0.00 0.00 0.00 4.11
10 11 6.154706 ACTCAATACGAGAAAACTCATAGGGT 59.845 38.462 0.00 0.00 45.45 4.34
11 12 6.574350 ACTCAATACGAGAAAACTCATAGGG 58.426 40.000 0.00 0.00 45.45 3.53
12 13 9.582431 TTAACTCAATACGAGAAAACTCATAGG 57.418 33.333 0.00 0.00 45.45 2.57
16 17 9.537192 TCTTTTAACTCAATACGAGAAAACTCA 57.463 29.630 0.00 0.00 45.45 3.41
18 19 9.760077 TCTCTTTTAACTCAATACGAGAAAACT 57.240 29.630 0.00 0.00 45.45 2.66
19 20 9.794653 GTCTCTTTTAACTCAATACGAGAAAAC 57.205 33.333 0.00 0.00 45.45 2.43
20 21 9.537192 TGTCTCTTTTAACTCAATACGAGAAAA 57.463 29.630 0.00 0.00 45.45 2.29
21 22 9.537192 TTGTCTCTTTTAACTCAATACGAGAAA 57.463 29.630 0.00 0.00 45.45 2.52
22 23 9.706691 ATTGTCTCTTTTAACTCAATACGAGAA 57.293 29.630 0.00 0.00 45.45 2.87
26 27 9.968743 GGTTATTGTCTCTTTTAACTCAATACG 57.031 33.333 0.00 0.00 30.85 3.06
60 61 9.803315 GGGAAAATAAGGAGAAAATGATACAAC 57.197 33.333 0.00 0.00 0.00 3.32
61 62 9.540538 TGGGAAAATAAGGAGAAAATGATACAA 57.459 29.630 0.00 0.00 0.00 2.41
62 63 8.966868 GTGGGAAAATAAGGAGAAAATGATACA 58.033 33.333 0.00 0.00 0.00 2.29
63 64 9.190317 AGTGGGAAAATAAGGAGAAAATGATAC 57.810 33.333 0.00 0.00 0.00 2.24
64 65 9.189156 CAGTGGGAAAATAAGGAGAAAATGATA 57.811 33.333 0.00 0.00 0.00 2.15
65 66 7.124750 CCAGTGGGAAAATAAGGAGAAAATGAT 59.875 37.037 0.00 0.00 35.59 2.45
66 67 6.437162 CCAGTGGGAAAATAAGGAGAAAATGA 59.563 38.462 0.00 0.00 35.59 2.57
67 68 6.633856 CCAGTGGGAAAATAAGGAGAAAATG 58.366 40.000 0.00 0.00 35.59 2.32
68 69 6.857437 CCAGTGGGAAAATAAGGAGAAAAT 57.143 37.500 0.00 0.00 35.59 1.82
85 86 2.364972 AACTCCTTCAAACCCAGTGG 57.635 50.000 0.63 0.63 37.80 4.00
86 87 4.261614 GCTAAAACTCCTTCAAACCCAGTG 60.262 45.833 0.00 0.00 0.00 3.66
87 88 3.889538 GCTAAAACTCCTTCAAACCCAGT 59.110 43.478 0.00 0.00 0.00 4.00
88 89 3.888930 TGCTAAAACTCCTTCAAACCCAG 59.111 43.478 0.00 0.00 0.00 4.45
89 90 3.904717 TGCTAAAACTCCTTCAAACCCA 58.095 40.909 0.00 0.00 0.00 4.51
90 91 4.098807 TGTTGCTAAAACTCCTTCAAACCC 59.901 41.667 0.00 0.00 0.00 4.11
91 92 5.257082 TGTTGCTAAAACTCCTTCAAACC 57.743 39.130 0.00 0.00 0.00 3.27
92 93 8.296713 TGATATGTTGCTAAAACTCCTTCAAAC 58.703 33.333 0.00 0.00 0.00 2.93
93 94 8.402798 TGATATGTTGCTAAAACTCCTTCAAA 57.597 30.769 0.00 0.00 0.00 2.69
94 95 7.994425 TGATATGTTGCTAAAACTCCTTCAA 57.006 32.000 0.00 0.00 0.00 2.69
95 96 7.994425 TTGATATGTTGCTAAAACTCCTTCA 57.006 32.000 0.00 0.00 0.00 3.02
96 97 8.296713 TGTTTGATATGTTGCTAAAACTCCTTC 58.703 33.333 0.00 0.00 0.00 3.46
97 98 8.082242 GTGTTTGATATGTTGCTAAAACTCCTT 58.918 33.333 0.00 0.00 0.00 3.36
98 99 7.309194 GGTGTTTGATATGTTGCTAAAACTCCT 60.309 37.037 8.97 0.00 37.80 3.69
99 100 6.806739 GGTGTTTGATATGTTGCTAAAACTCC 59.193 38.462 0.00 0.00 35.38 3.85
100 101 7.593825 AGGTGTTTGATATGTTGCTAAAACTC 58.406 34.615 0.00 0.00 0.00 3.01
101 102 7.524717 AGGTGTTTGATATGTTGCTAAAACT 57.475 32.000 0.00 0.00 0.00 2.66
102 103 9.503427 GATAGGTGTTTGATATGTTGCTAAAAC 57.497 33.333 0.00 0.00 0.00 2.43
103 104 9.461312 AGATAGGTGTTTGATATGTTGCTAAAA 57.539 29.630 0.00 0.00 0.00 1.52
104 105 9.109393 GAGATAGGTGTTTGATATGTTGCTAAA 57.891 33.333 0.00 0.00 0.00 1.85
105 106 7.715249 GGAGATAGGTGTTTGATATGTTGCTAA 59.285 37.037 0.00 0.00 0.00 3.09
106 107 7.071196 AGGAGATAGGTGTTTGATATGTTGCTA 59.929 37.037 0.00 0.00 0.00 3.49
107 108 6.058183 GGAGATAGGTGTTTGATATGTTGCT 58.942 40.000 0.00 0.00 0.00 3.91
108 109 6.058183 AGGAGATAGGTGTTTGATATGTTGC 58.942 40.000 0.00 0.00 0.00 4.17
109 110 7.275183 TGAGGAGATAGGTGTTTGATATGTTG 58.725 38.462 0.00 0.00 0.00 3.33
110 111 7.437713 TGAGGAGATAGGTGTTTGATATGTT 57.562 36.000 0.00 0.00 0.00 2.71
111 112 7.623999 ATGAGGAGATAGGTGTTTGATATGT 57.376 36.000 0.00 0.00 0.00 2.29
115 116 9.927081 AAAAATATGAGGAGATAGGTGTTTGAT 57.073 29.630 0.00 0.00 0.00 2.57
138 139 3.198853 CCTCCAAAAACCCTGTGGAAAAA 59.801 43.478 0.00 0.00 40.87 1.94
139 140 2.769095 CCTCCAAAAACCCTGTGGAAAA 59.231 45.455 0.00 0.00 40.87 2.29
140 141 2.023888 TCCTCCAAAAACCCTGTGGAAA 60.024 45.455 0.00 0.00 40.87 3.13
141 142 1.571457 TCCTCCAAAAACCCTGTGGAA 59.429 47.619 0.00 0.00 40.87 3.53
142 143 1.144913 CTCCTCCAAAAACCCTGTGGA 59.855 52.381 0.00 0.00 39.14 4.02
143 144 1.620822 CTCCTCCAAAAACCCTGTGG 58.379 55.000 0.00 0.00 37.80 4.17
144 145 0.961753 GCTCCTCCAAAAACCCTGTG 59.038 55.000 0.00 0.00 0.00 3.66
145 146 0.178961 GGCTCCTCCAAAAACCCTGT 60.179 55.000 0.00 0.00 34.01 4.00
146 147 0.113190 AGGCTCCTCCAAAAACCCTG 59.887 55.000 0.00 0.00 37.29 4.45
147 148 0.860457 AAGGCTCCTCCAAAAACCCT 59.140 50.000 0.00 0.00 37.29 4.34
148 149 1.717032 AAAGGCTCCTCCAAAAACCC 58.283 50.000 0.00 0.00 37.29 4.11
149 150 2.698274 TGAAAAGGCTCCTCCAAAAACC 59.302 45.455 0.00 0.00 37.29 3.27
150 151 4.099419 TCTTGAAAAGGCTCCTCCAAAAAC 59.901 41.667 0.00 0.00 46.24 2.43
151 152 4.285863 TCTTGAAAAGGCTCCTCCAAAAA 58.714 39.130 0.00 0.00 46.24 1.94
152 153 3.909732 TCTTGAAAAGGCTCCTCCAAAA 58.090 40.909 0.00 0.00 46.24 2.44
153 154 3.593442 TCTTGAAAAGGCTCCTCCAAA 57.407 42.857 0.00 0.00 46.24 3.28
154 155 3.074390 TCATCTTGAAAAGGCTCCTCCAA 59.926 43.478 0.00 0.00 46.24 3.53
155 156 2.644299 TCATCTTGAAAAGGCTCCTCCA 59.356 45.455 0.00 0.00 46.24 3.86
156 157 3.356529 TCATCTTGAAAAGGCTCCTCC 57.643 47.619 0.00 0.00 46.24 4.30
157 158 4.521146 TCATCATCTTGAAAAGGCTCCTC 58.479 43.478 0.00 0.00 46.24 3.71
158 159 4.581309 TCATCATCTTGAAAAGGCTCCT 57.419 40.909 0.00 0.00 46.24 3.69
159 160 6.060788 AGTATCATCATCTTGAAAAGGCTCC 58.939 40.000 0.00 0.00 46.24 4.70
160 161 7.565323 AAGTATCATCATCTTGAAAAGGCTC 57.435 36.000 0.00 0.00 46.24 4.70
161 162 8.049117 TGTAAGTATCATCATCTTGAAAAGGCT 58.951 33.333 0.00 0.00 46.24 4.58
162 163 8.125448 GTGTAAGTATCATCATCTTGAAAAGGC 58.875 37.037 0.00 0.00 46.24 4.35
163 164 9.388506 AGTGTAAGTATCATCATCTTGAAAAGG 57.611 33.333 0.00 0.00 46.24 3.11
180 181 8.692710 CCTGATCCATACTTGTTAGTGTAAGTA 58.307 37.037 0.00 0.00 41.88 2.24
181 182 7.364762 CCCTGATCCATACTTGTTAGTGTAAGT 60.365 40.741 0.00 0.00 40.09 2.24
182 183 6.986817 CCCTGATCCATACTTGTTAGTGTAAG 59.013 42.308 0.00 0.00 35.78 2.34
183 184 6.126883 CCCCTGATCCATACTTGTTAGTGTAA 60.127 42.308 0.00 0.00 35.78 2.41
184 185 5.365605 CCCCTGATCCATACTTGTTAGTGTA 59.634 44.000 0.00 0.00 35.78 2.90
185 186 4.164221 CCCCTGATCCATACTTGTTAGTGT 59.836 45.833 0.00 0.00 35.78 3.55
186 187 4.444876 CCCCCTGATCCATACTTGTTAGTG 60.445 50.000 0.00 0.00 35.78 2.74
187 188 3.716872 CCCCCTGATCCATACTTGTTAGT 59.283 47.826 0.00 0.00 38.44 2.24
188 189 3.973973 TCCCCCTGATCCATACTTGTTAG 59.026 47.826 0.00 0.00 0.00 2.34
189 190 3.973973 CTCCCCCTGATCCATACTTGTTA 59.026 47.826 0.00 0.00 0.00 2.41
190 191 2.780010 CTCCCCCTGATCCATACTTGTT 59.220 50.000 0.00 0.00 0.00 2.83
191 192 2.293856 ACTCCCCCTGATCCATACTTGT 60.294 50.000 0.00 0.00 0.00 3.16
192 193 2.105477 CACTCCCCCTGATCCATACTTG 59.895 54.545 0.00 0.00 0.00 3.16
193 194 2.293856 ACACTCCCCCTGATCCATACTT 60.294 50.000 0.00 0.00 0.00 2.24
194 195 1.295292 ACACTCCCCCTGATCCATACT 59.705 52.381 0.00 0.00 0.00 2.12
195 196 1.807814 ACACTCCCCCTGATCCATAC 58.192 55.000 0.00 0.00 0.00 2.39
196 197 2.587060 AACACTCCCCCTGATCCATA 57.413 50.000 0.00 0.00 0.00 2.74
197 198 2.412591 CTAACACTCCCCCTGATCCAT 58.587 52.381 0.00 0.00 0.00 3.41
198 199 1.625228 CCTAACACTCCCCCTGATCCA 60.625 57.143 0.00 0.00 0.00 3.41
199 200 1.132500 CCTAACACTCCCCCTGATCC 58.868 60.000 0.00 0.00 0.00 3.36
200 201 2.176247 TCCTAACACTCCCCCTGATC 57.824 55.000 0.00 0.00 0.00 2.92
201 202 2.897823 ATCCTAACACTCCCCCTGAT 57.102 50.000 0.00 0.00 0.00 2.90
202 203 2.661176 AATCCTAACACTCCCCCTGA 57.339 50.000 0.00 0.00 0.00 3.86
203 204 4.855298 TTAAATCCTAACACTCCCCCTG 57.145 45.455 0.00 0.00 0.00 4.45
204 205 7.533923 TTAATTAAATCCTAACACTCCCCCT 57.466 36.000 0.00 0.00 0.00 4.79
205 206 8.405418 GATTAATTAAATCCTAACACTCCCCC 57.595 38.462 1.21 0.00 38.47 5.40
223 224 9.475620 CTTGGTTAGGAAAAGTAGGGATTAATT 57.524 33.333 0.00 0.00 0.00 1.40
251 252 3.530910 AAGGGACACGAGGCAACCG 62.531 63.158 0.00 0.00 36.50 4.44
252 253 1.671379 GAAGGGACACGAGGCAACC 60.671 63.158 0.00 0.00 37.17 3.77
253 254 0.951040 CAGAAGGGACACGAGGCAAC 60.951 60.000 0.00 0.00 0.00 4.17
254 255 1.118965 TCAGAAGGGACACGAGGCAA 61.119 55.000 0.00 0.00 0.00 4.52
255 256 1.533033 TCAGAAGGGACACGAGGCA 60.533 57.895 0.00 0.00 0.00 4.75
256 257 1.079750 GTCAGAAGGGACACGAGGC 60.080 63.158 0.00 0.00 37.73 4.70
257 258 2.351777 TGTCAGAAGGGACACGAGG 58.648 57.895 0.00 0.00 42.56 4.63
262 263 1.415672 GGGGTGTGTCAGAAGGGACA 61.416 60.000 0.00 0.00 45.06 4.02
263 264 1.128188 AGGGGTGTGTCAGAAGGGAC 61.128 60.000 0.00 0.00 38.29 4.46
264 265 0.401395 AAGGGGTGTGTCAGAAGGGA 60.401 55.000 0.00 0.00 0.00 4.20
265 266 0.036875 GAAGGGGTGTGTCAGAAGGG 59.963 60.000 0.00 0.00 0.00 3.95
266 267 0.320771 CGAAGGGGTGTGTCAGAAGG 60.321 60.000 0.00 0.00 0.00 3.46
267 268 3.217242 CGAAGGGGTGTGTCAGAAG 57.783 57.895 0.00 0.00 0.00 2.85
281 282 7.776618 TGATGTATATATATAGCCCCCGAAG 57.223 40.000 2.53 0.00 0.00 3.79
282 283 8.593679 CATTGATGTATATATATAGCCCCCGAA 58.406 37.037 2.53 0.00 0.00 4.30
283 284 7.953493 TCATTGATGTATATATATAGCCCCCGA 59.047 37.037 2.53 0.00 0.00 5.14
284 285 8.134202 TCATTGATGTATATATATAGCCCCCG 57.866 38.462 2.53 0.00 0.00 5.73
285 286 8.543774 CCTCATTGATGTATATATATAGCCCCC 58.456 40.741 2.53 0.00 0.00 5.40
286 287 9.326489 TCCTCATTGATGTATATATATAGCCCC 57.674 37.037 2.53 0.00 0.00 5.80
296 297 8.708378 TGAACAGTTCTCCTCATTGATGTATAT 58.292 33.333 14.51 0.00 0.00 0.86
297 298 7.981789 GTGAACAGTTCTCCTCATTGATGTATA 59.018 37.037 14.51 0.00 0.00 1.47
298 299 6.820656 GTGAACAGTTCTCCTCATTGATGTAT 59.179 38.462 14.51 0.00 0.00 2.29
299 300 6.014242 AGTGAACAGTTCTCCTCATTGATGTA 60.014 38.462 14.51 0.00 0.00 2.29
300 301 4.999950 GTGAACAGTTCTCCTCATTGATGT 59.000 41.667 14.51 0.00 0.00 3.06
301 302 5.243981 AGTGAACAGTTCTCCTCATTGATG 58.756 41.667 14.51 0.00 0.00 3.07
302 303 5.495926 AGTGAACAGTTCTCCTCATTGAT 57.504 39.130 14.51 0.00 0.00 2.57
303 304 4.963318 AGTGAACAGTTCTCCTCATTGA 57.037 40.909 14.51 0.00 0.00 2.57
304 305 6.483307 TGTAAAGTGAACAGTTCTCCTCATTG 59.517 38.462 14.51 0.00 0.00 2.82
305 306 6.591935 TGTAAAGTGAACAGTTCTCCTCATT 58.408 36.000 14.51 6.67 0.00 2.57
306 307 6.174720 TGTAAAGTGAACAGTTCTCCTCAT 57.825 37.500 14.51 6.11 0.00 2.90
307 308 5.607939 TGTAAAGTGAACAGTTCTCCTCA 57.392 39.130 14.51 5.40 0.00 3.86
308 309 6.459923 AGATGTAAAGTGAACAGTTCTCCTC 58.540 40.000 14.51 3.21 0.00 3.71
309 310 6.426646 AGATGTAAAGTGAACAGTTCTCCT 57.573 37.500 14.51 7.43 0.00 3.69
310 311 7.012421 ACAAAGATGTAAAGTGAACAGTTCTCC 59.988 37.037 14.51 5.30 38.24 3.71
311 312 7.920738 ACAAAGATGTAAAGTGAACAGTTCTC 58.079 34.615 14.51 10.77 38.24 2.87
312 313 7.770897 AGACAAAGATGTAAAGTGAACAGTTCT 59.229 33.333 14.51 0.00 40.74 3.01
313 314 7.920738 AGACAAAGATGTAAAGTGAACAGTTC 58.079 34.615 6.32 6.32 40.74 3.01
314 315 7.865706 AGACAAAGATGTAAAGTGAACAGTT 57.134 32.000 0.00 0.00 40.74 3.16
315 316 9.561069 AATAGACAAAGATGTAAAGTGAACAGT 57.439 29.630 0.00 0.00 40.74 3.55
316 317 9.817365 CAATAGACAAAGATGTAAAGTGAACAG 57.183 33.333 0.00 0.00 40.74 3.16
317 318 9.337396 ACAATAGACAAAGATGTAAAGTGAACA 57.663 29.630 0.00 0.00 40.74 3.18
318 319 9.813080 GACAATAGACAAAGATGTAAAGTGAAC 57.187 33.333 0.00 0.00 40.74 3.18
319 320 9.778741 AGACAATAGACAAAGATGTAAAGTGAA 57.221 29.630 0.00 0.00 40.74 3.18
320 321 9.424319 GAGACAATAGACAAAGATGTAAAGTGA 57.576 33.333 0.00 0.00 40.74 3.41
321 322 9.429359 AGAGACAATAGACAAAGATGTAAAGTG 57.571 33.333 0.00 0.00 40.74 3.16
322 323 9.646427 GAGAGACAATAGACAAAGATGTAAAGT 57.354 33.333 0.00 0.00 40.74 2.66
323 324 9.092876 GGAGAGACAATAGACAAAGATGTAAAG 57.907 37.037 0.00 0.00 40.74 1.85
324 325 8.816894 AGGAGAGACAATAGACAAAGATGTAAA 58.183 33.333 0.00 0.00 40.74 2.01
325 326 8.367660 AGGAGAGACAATAGACAAAGATGTAA 57.632 34.615 0.00 0.00 40.74 2.41
326 327 7.962995 AGGAGAGACAATAGACAAAGATGTA 57.037 36.000 0.00 0.00 40.74 2.29
327 328 6.865834 AGGAGAGACAATAGACAAAGATGT 57.134 37.500 0.00 0.00 44.25 3.06
328 329 7.555087 AGAAGGAGAGACAATAGACAAAGATG 58.445 38.462 0.00 0.00 0.00 2.90
329 330 7.619302 AGAGAAGGAGAGACAATAGACAAAGAT 59.381 37.037 0.00 0.00 0.00 2.40
330 331 6.951198 AGAGAAGGAGAGACAATAGACAAAGA 59.049 38.462 0.00 0.00 0.00 2.52
331 332 7.169158 AGAGAAGGAGAGACAATAGACAAAG 57.831 40.000 0.00 0.00 0.00 2.77
332 333 7.891183 AGTAGAGAAGGAGAGACAATAGACAAA 59.109 37.037 0.00 0.00 0.00 2.83
333 334 7.406916 AGTAGAGAAGGAGAGACAATAGACAA 58.593 38.462 0.00 0.00 0.00 3.18
334 335 6.964464 AGTAGAGAAGGAGAGACAATAGACA 58.036 40.000 0.00 0.00 0.00 3.41
335 336 6.202188 CGAGTAGAGAAGGAGAGACAATAGAC 59.798 46.154 0.00 0.00 0.00 2.59
336 337 6.098552 TCGAGTAGAGAAGGAGAGACAATAGA 59.901 42.308 0.00 0.00 0.00 1.98
337 338 6.285224 TCGAGTAGAGAAGGAGAGACAATAG 58.715 44.000 0.00 0.00 0.00 1.73
338 339 6.236558 TCGAGTAGAGAAGGAGAGACAATA 57.763 41.667 0.00 0.00 0.00 1.90
339 340 5.105567 TCGAGTAGAGAAGGAGAGACAAT 57.894 43.478 0.00 0.00 0.00 2.71
340 341 4.554960 TCGAGTAGAGAAGGAGAGACAA 57.445 45.455 0.00 0.00 0.00 3.18
341 342 4.554960 TTCGAGTAGAGAAGGAGAGACA 57.445 45.455 0.00 0.00 0.00 3.41
342 343 4.696402 TGTTTCGAGTAGAGAAGGAGAGAC 59.304 45.833 0.00 0.00 0.00 3.36
343 344 4.907809 TGTTTCGAGTAGAGAAGGAGAGA 58.092 43.478 0.00 0.00 0.00 3.10
344 345 5.630661 TTGTTTCGAGTAGAGAAGGAGAG 57.369 43.478 0.00 0.00 0.00 3.20
345 346 6.591750 AATTGTTTCGAGTAGAGAAGGAGA 57.408 37.500 0.00 0.00 0.00 3.71
346 347 6.879188 GAATTGTTTCGAGTAGAGAAGGAG 57.121 41.667 0.00 0.00 0.00 3.69
360 361 2.091541 TGATCCCCTGCGAATTGTTTC 58.908 47.619 0.00 0.00 0.00 2.78
361 362 1.818674 GTGATCCCCTGCGAATTGTTT 59.181 47.619 0.00 0.00 0.00 2.83
362 363 1.463674 GTGATCCCCTGCGAATTGTT 58.536 50.000 0.00 0.00 0.00 2.83
363 364 0.744414 CGTGATCCCCTGCGAATTGT 60.744 55.000 0.00 0.00 0.00 2.71
364 365 0.461870 TCGTGATCCCCTGCGAATTG 60.462 55.000 0.00 0.00 0.00 2.32
705 717 2.041819 GGGAGGATGACGGGGAGT 60.042 66.667 0.00 0.00 0.00 3.85
706 718 2.844839 GGGGAGGATGACGGGGAG 60.845 72.222 0.00 0.00 0.00 4.30
707 719 4.492303 GGGGGAGGATGACGGGGA 62.492 72.222 0.00 0.00 0.00 4.81
708 720 3.096089 TAGGGGGAGGATGACGGGG 62.096 68.421 0.00 0.00 0.00 5.73
715 730 2.428038 GGAAGCTAAGTAGGGGGAGGAT 60.428 54.545 0.00 0.00 0.00 3.24
738 753 2.609920 GGAGGGAGAGACGGGGAT 59.390 66.667 0.00 0.00 0.00 3.85
767 788 3.187699 CTCCGTGATCGCTCGAGGG 62.188 68.421 22.60 22.60 35.54 4.30
805 826 0.321122 AGCTGCTCTTCGAGGGTTTG 60.321 55.000 0.00 0.00 0.00 2.93
840 861 1.453669 GGGAAGGGCTGAGGCTATG 59.546 63.158 5.84 0.00 38.73 2.23
841 862 1.772156 GGGGAAGGGCTGAGGCTAT 60.772 63.158 5.84 0.00 38.73 2.97
842 863 2.366972 GGGGAAGGGCTGAGGCTA 60.367 66.667 5.84 0.00 38.73 3.93
891 914 6.467677 ATTCCAAAGAACATCGAGAGAGAAA 58.532 36.000 0.00 0.00 38.14 2.52
894 917 6.148480 ACAAATTCCAAAGAACATCGAGAGAG 59.852 38.462 0.00 0.00 38.14 3.20
896 919 6.082338 CACAAATTCCAAAGAACATCGAGAG 58.918 40.000 0.00 0.00 33.97 3.20
900 923 4.383649 CAGCACAAATTCCAAAGAACATCG 59.616 41.667 0.00 0.00 33.97 3.84
901 924 4.687483 CCAGCACAAATTCCAAAGAACATC 59.313 41.667 0.00 0.00 33.97 3.06
911 934 1.595093 CCCGACCCAGCACAAATTCC 61.595 60.000 0.00 0.00 0.00 3.01
913 936 1.606313 CCCCGACCCAGCACAAATT 60.606 57.895 0.00 0.00 0.00 1.82
914 937 2.035626 CCCCGACCCAGCACAAAT 59.964 61.111 0.00 0.00 0.00 2.32
931 954 2.187946 CCATCAGTCCCTCCACGC 59.812 66.667 0.00 0.00 0.00 5.34
940 970 4.652822 AGTAAAACCAAGGTCCATCAGTC 58.347 43.478 0.00 0.00 0.00 3.51
1058 1096 3.303351 AATAAATCACAGGCCCCAGAG 57.697 47.619 0.00 0.00 0.00 3.35
1100 1138 3.004734 AGGCCAGTTCATTTTCTTGTTCG 59.995 43.478 5.01 0.00 0.00 3.95
1122 1160 1.282738 TGCTCTGGAATTCCATCTGCA 59.717 47.619 29.27 29.27 46.46 4.41
1204 1243 2.362397 TCCATATCACTCGCCAAGACTC 59.638 50.000 0.00 0.00 0.00 3.36
1366 1406 2.038557 GCCAGAGTTACCTCTTCCACAA 59.961 50.000 0.00 0.00 46.08 3.33
1381 1421 2.507992 CGAGAAGCCACGCCAGAG 60.508 66.667 0.00 0.00 0.00 3.35
1384 1424 3.454587 AACACGAGAAGCCACGCCA 62.455 57.895 0.00 0.00 0.00 5.69
1387 1427 0.318699 TCAGAACACGAGAAGCCACG 60.319 55.000 0.00 0.00 0.00 4.94
1427 1468 2.616376 TGGTGAACACTATTGCACACAC 59.384 45.455 4.96 0.00 35.25 3.82
1448 1490 5.192522 AGTTTCCAGGATCATAAGACACCAT 59.807 40.000 0.00 0.00 0.00 3.55
1474 1520 3.689649 GGTGGTTCATCATGAAGTGGTAC 59.310 47.826 0.00 0.00 37.00 3.34
1487 1533 4.522789 AGTTTTATCTTTGCGGTGGTTCAT 59.477 37.500 0.00 0.00 0.00 2.57
1511 1557 2.213499 GATGCCAGAATTGTACGGGAG 58.787 52.381 0.00 0.00 0.00 4.30
1527 1573 2.706339 AGAATCCAGTCAGGTGATGC 57.294 50.000 0.00 0.00 39.02 3.91
1528 1574 3.539604 GGAAGAATCCAGTCAGGTGATG 58.460 50.000 0.00 0.00 45.79 3.07
1550 1597 1.990563 GCACAATGTTCAAGCATCAGC 59.009 47.619 0.00 0.00 42.56 4.26
1557 1604 2.620115 ACAGACCTGCACAATGTTCAAG 59.380 45.455 0.00 0.00 0.00 3.02
1594 1641 2.169832 TCTTTGGCACCTTCTTCTCG 57.830 50.000 0.00 0.00 0.00 4.04
1601 1651 5.543790 ACTTATGGATTTTCTTTGGCACCTT 59.456 36.000 0.00 0.00 0.00 3.50
1602 1652 5.086621 ACTTATGGATTTTCTTTGGCACCT 58.913 37.500 0.00 0.00 0.00 4.00
1603 1653 5.405935 ACTTATGGATTTTCTTTGGCACC 57.594 39.130 0.00 0.00 0.00 5.01
1654 1704 6.656693 CCAACTCATTAAAGAGGTCATTCTGT 59.343 38.462 12.07 0.00 39.97 3.41
1676 1726 1.421268 CATACCTAGCATGGCTCCCAA 59.579 52.381 0.00 0.00 40.44 4.12
1766 1817 7.337942 CCACAAGCTCATATAAAGAAACTTCCT 59.662 37.037 0.00 0.00 0.00 3.36
1971 2023 8.052748 GGGGATAAGGTCATAACATATATGCAA 58.947 37.037 12.79 1.42 0.00 4.08
1983 2035 3.967326 CAGACACTGGGGATAAGGTCATA 59.033 47.826 0.00 0.00 0.00 2.15
1992 2044 4.289672 ACAAACTAATCAGACACTGGGGAT 59.710 41.667 0.00 0.00 31.51 3.85
2029 2082 3.289407 TGCATATCCAAAACGATGGGA 57.711 42.857 0.00 0.00 41.05 4.37
2080 2133 2.508526 CCTGTCTGGTTCTGAAAAGGG 58.491 52.381 0.00 0.00 0.00 3.95
2232 2285 6.917217 AATTGCTGAATAGAGTTGCTCTAC 57.083 37.500 7.90 0.00 44.47 2.59
2404 2457 9.355916 TGAGCAGTGATAATAGAGTACATTACT 57.644 33.333 0.00 0.00 42.86 2.24
2405 2458 9.619316 CTGAGCAGTGATAATAGAGTACATTAC 57.381 37.037 0.00 0.00 0.00 1.89
2406 2459 9.574516 TCTGAGCAGTGATAATAGAGTACATTA 57.425 33.333 0.00 0.00 0.00 1.90
2409 2462 9.574516 TTATCTGAGCAGTGATAATAGAGTACA 57.425 33.333 0.00 0.00 32.29 2.90
2655 2867 2.747446 GCGAATGTTGTACTGGGAACAT 59.253 45.455 4.01 4.01 43.16 2.71
2669 2881 0.603707 CTGGTGAGTGTGGCGAATGT 60.604 55.000 0.00 0.00 0.00 2.71
2681 2893 1.135257 GTCGAGGTGATGACTGGTGAG 60.135 57.143 0.00 0.00 32.37 3.51
2711 2923 3.668447 CTCAGTGATTACAGGTTGCAGT 58.332 45.455 0.00 0.00 0.00 4.40
2836 3048 4.033776 CCTGGGGCCGTGTCACAT 62.034 66.667 3.42 0.00 0.00 3.21
2918 3130 5.542779 CCACTACTATATTGTTGCTCCTCC 58.457 45.833 0.00 0.00 0.00 4.30
2948 3160 2.022129 GTGCACACCGTCTTCCTCG 61.022 63.158 13.17 0.00 0.00 4.63
2961 3173 5.470777 TGTTATGTACTTAAACCCTGTGCAC 59.529 40.000 10.75 10.75 0.00 4.57
2962 3174 5.470777 GTGTTATGTACTTAAACCCTGTGCA 59.529 40.000 2.99 0.00 0.00 4.57
2963 3175 5.470777 TGTGTTATGTACTTAAACCCTGTGC 59.529 40.000 2.99 0.00 0.00 4.57
3002 3214 6.538742 TCCACTCACACTAAGAAACTTTTCAG 59.461 38.462 4.58 0.00 39.61 3.02
3006 3218 5.817816 CACTCCACTCACACTAAGAAACTTT 59.182 40.000 0.00 0.00 0.00 2.66
3031 3244 5.987953 CAGCTACATATGTATCTGTTGCAGT 59.012 40.000 27.45 7.98 43.50 4.40
3050 3269 5.247564 AGGTTGGAGTTTACATACACAGCTA 59.752 40.000 0.00 0.00 0.00 3.32
3053 3272 5.305585 ACAGGTTGGAGTTTACATACACAG 58.694 41.667 0.00 0.00 0.00 3.66
3058 3277 4.224370 GGGAGACAGGTTGGAGTTTACATA 59.776 45.833 0.00 0.00 0.00 2.29
3081 3300 6.563222 TTTAACCCGTTAAGACCAAGATTG 57.437 37.500 0.71 0.00 36.52 2.67
3089 3308 8.947055 TTATCACCTATTTAACCCGTTAAGAC 57.053 34.615 0.71 0.00 36.52 3.01
3133 3352 6.476706 TGTGCAGTTATCAGATACAAGATTCG 59.523 38.462 0.00 0.00 0.00 3.34
3189 3448 4.982916 ACTGTCGATGCGGAAATATACTTC 59.017 41.667 0.00 0.00 0.00 3.01
3200 3459 0.179100 ATCTTGGACTGTCGATGCGG 60.179 55.000 1.07 0.00 0.00 5.69
3225 3490 2.549754 CTGAATTGAAGCAACGACCACT 59.450 45.455 0.00 0.00 0.00 4.00
3241 3506 5.279206 CCTCAGATATCTAACCGTGCTGAAT 60.279 44.000 4.54 0.00 31.40 2.57
3249 3514 5.278561 GGTGTCTTCCTCAGATATCTAACCG 60.279 48.000 4.54 0.00 32.60 4.44
3273 3538 2.180017 GGTTGCAGCGCCATTGAG 59.820 61.111 2.29 0.00 0.00 3.02
3288 3553 1.375326 GGACAGGAAAGAAGCGGGT 59.625 57.895 0.00 0.00 0.00 5.28
3327 3592 1.971505 TAGCACAGGCCAGGGATTCG 61.972 60.000 5.01 0.00 42.56 3.34
3337 3602 2.057137 TGGGATGAAATAGCACAGGC 57.943 50.000 0.00 0.00 41.61 4.85
3361 3626 0.541392 AACGCATATGCACTGGGAGA 59.459 50.000 26.52 0.00 42.21 3.71
3364 3629 0.809636 TCGAACGCATATGCACTGGG 60.810 55.000 26.52 12.64 42.21 4.45
3368 3633 0.315382 GCTGTCGAACGCATATGCAC 60.315 55.000 26.52 16.77 42.21 4.57
3431 3696 4.329545 GGAGGACGGTGCAGGCAA 62.330 66.667 1.61 0.00 0.00 4.52
3453 3718 2.743664 CAGAGTTCATGGCAATGTCGAA 59.256 45.455 0.00 0.00 35.15 3.71
3693 3958 3.487120 AACGAGGTTACCTTTCTTGCT 57.513 42.857 4.99 0.00 31.76 3.91
3750 4015 2.486918 CAGTCAGATGCCGCAATATCA 58.513 47.619 0.00 0.00 0.00 2.15
3840 4105 1.345415 CCAAAGGAGGCAATTGCAGTT 59.655 47.619 30.32 15.95 44.36 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.