Multiple sequence alignment - TraesCS2D01G163800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G163800 chr2D 100.000 4518 0 0 1 4518 108768847 108773364 0.000000e+00 8344.0
1 TraesCS2D01G163800 chr2D 77.841 176 25 5 500 663 621983765 621983938 3.720000e-16 97.1
2 TraesCS2D01G163800 chr2B 90.490 2755 179 39 1 2740 158430011 158432697 0.000000e+00 3559.0
3 TraesCS2D01G163800 chr2B 89.886 969 56 22 2770 3727 158432693 158433630 0.000000e+00 1208.0
4 TraesCS2D01G163800 chr2B 86.707 331 30 6 3768 4097 158433642 158433959 5.560000e-94 355.0
5 TraesCS2D01G163800 chr2B 85.577 104 15 0 1704 1807 460038287 460038184 4.780000e-20 110.0
6 TraesCS2D01G163800 chr2B 92.308 52 4 0 566 617 763885763 763885814 1.740000e-09 75.0
7 TraesCS2D01G163800 chr2A 90.252 2544 173 32 706 3220 104787014 104789511 0.000000e+00 3254.0
8 TraesCS2D01G163800 chr2A 93.377 770 35 11 3340 4103 104789600 104790359 0.000000e+00 1125.0
9 TraesCS2D01G163800 chr5B 87.907 1290 123 11 945 2224 396432022 396433288 0.000000e+00 1487.0
10 TraesCS2D01G163800 chr5B 87.643 437 52 2 2261 2696 396433294 396433729 1.450000e-139 507.0
11 TraesCS2D01G163800 chr5B 82.911 474 43 16 2775 3220 396433760 396434223 4.240000e-105 392.0
12 TraesCS2D01G163800 chr5B 89.130 46 4 1 3340 3384 396434288 396434333 6.310000e-04 56.5
13 TraesCS2D01G163800 chr5A 86.789 1196 135 11 1042 2226 438823236 438824419 0.000000e+00 1312.0
14 TraesCS2D01G163800 chr5A 85.393 445 43 9 2255 2696 438824417 438824842 4.150000e-120 442.0
15 TraesCS2D01G163800 chr5A 87.446 231 20 7 2849 3072 438842352 438842580 1.610000e-64 257.0
16 TraesCS2D01G163800 chr5A 87.255 102 9 2 3123 3220 438843704 438843805 3.690000e-21 113.0
17 TraesCS2D01G163800 chr5A 90.476 63 5 1 3341 3403 438843871 438843932 1.040000e-11 82.4
18 TraesCS2D01G163800 chr5D 87.520 617 49 10 938 1545 337681046 337681643 0.000000e+00 688.0
19 TraesCS2D01G163800 chr5D 82.759 638 78 6 1592 2227 337681640 337682247 1.430000e-149 540.0
20 TraesCS2D01G163800 chr5D 87.872 437 46 4 2261 2696 337682252 337682682 1.450000e-139 507.0
21 TraesCS2D01G163800 chr5D 83.227 471 52 16 2765 3220 337682702 337683160 1.510000e-109 407.0
22 TraesCS2D01G163800 chr3A 80.328 122 18 5 539 656 688413129 688413010 2.240000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G163800 chr2D 108768847 108773364 4517 False 8344.000000 8344 100.000000 1 4518 1 chr2D.!!$F1 4517
1 TraesCS2D01G163800 chr2B 158430011 158433959 3948 False 1707.333333 3559 89.027667 1 4097 3 chr2B.!!$F2 4096
2 TraesCS2D01G163800 chr2A 104787014 104790359 3345 False 2189.500000 3254 91.814500 706 4103 2 chr2A.!!$F1 3397
3 TraesCS2D01G163800 chr5B 396432022 396434333 2311 False 610.625000 1487 86.897750 945 3384 4 chr5B.!!$F1 2439
4 TraesCS2D01G163800 chr5A 438823236 438824842 1606 False 877.000000 1312 86.091000 1042 2696 2 chr5A.!!$F1 1654
5 TraesCS2D01G163800 chr5D 337681046 337683160 2114 False 535.500000 688 85.344500 938 3220 4 chr5D.!!$F1 2282

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
158 159 0.247460 CCTCGTCAGATGGTCTGCAA 59.753 55.0 2.13 0.0 43.95 4.08 F
417 421 0.249953 TCTTTGCGTGCCCGTTTCTA 60.250 50.0 0.00 0.0 36.15 2.10 F
1792 1854 0.039165 GTTGTGCTGCAAGGCTAACC 60.039 55.0 2.77 0.0 37.83 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1470 1527 0.108585 TCACCTGAAACCTGGACAGC 59.891 55.0 0.0 0.0 0.0 4.40 R
1819 1882 0.112995 AGGTCTTTGCATTCCAGGCA 59.887 50.0 0.0 0.0 40.0 4.75 R
3767 3956 0.109781 CGACCCGAAAATGCAACCTG 60.110 55.0 0.0 0.0 0.0 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 94 5.819825 ATCTAGAGGGAAAAACGAAATGC 57.180 39.130 0.00 0.00 0.00 3.56
108 109 8.770438 AAACGAAATGCAAATAACATATGGTT 57.230 26.923 7.80 2.04 43.62 3.67
128 129 1.799258 GCATAGAGGGCCGCAATTGG 61.799 60.000 10.70 0.00 0.00 3.16
157 158 1.893062 CCTCGTCAGATGGTCTGCA 59.107 57.895 2.13 0.00 43.95 4.41
158 159 0.247460 CCTCGTCAGATGGTCTGCAA 59.753 55.000 2.13 0.00 43.95 4.08
167 169 3.498777 CAGATGGTCTGCAATCATAGCTG 59.501 47.826 0.00 0.00 37.72 4.24
175 177 6.652481 GGTCTGCAATCATAGCTGTACATAAT 59.348 38.462 0.00 0.00 33.36 1.28
180 182 7.933033 TGCAATCATAGCTGTACATAATTCTGA 59.067 33.333 0.00 0.00 0.00 3.27
307 311 1.758280 ACGGACACGCCCTTCATTATA 59.242 47.619 0.00 0.00 46.04 0.98
309 313 3.181458 ACGGACACGCCCTTCATTATAAT 60.181 43.478 0.00 0.00 46.04 1.28
318 322 7.122650 CACGCCCTTCATTATAATTTATGGGAT 59.877 37.037 21.78 12.22 34.34 3.85
320 324 7.339212 CGCCCTTCATTATAATTTATGGGATCA 59.661 37.037 21.78 0.00 34.34 2.92
359 363 2.076863 CTTCATTTCAGTCGGTGGACC 58.923 52.381 0.00 0.00 44.54 4.46
382 386 1.601197 ACGAGCGTCTGTCACCTCT 60.601 57.895 0.00 0.00 0.00 3.69
383 387 1.135731 CGAGCGTCTGTCACCTCTC 59.864 63.158 0.00 0.00 0.00 3.20
385 389 0.963355 GAGCGTCTGTCACCTCTCCT 60.963 60.000 0.00 0.00 0.00 3.69
394 398 1.214062 CACCTCTCCTGTGCGACTC 59.786 63.158 0.00 0.00 0.00 3.36
405 409 2.300066 TGCGACTCGTGTCTTTGCG 61.300 57.895 15.02 3.96 40.86 4.85
410 414 2.954753 CTCGTGTCTTTGCGTGCCC 61.955 63.158 0.00 0.00 0.00 5.36
414 418 2.115911 TGTCTTTGCGTGCCCGTTT 61.116 52.632 0.00 0.00 36.15 3.60
417 421 0.249953 TCTTTGCGTGCCCGTTTCTA 60.250 50.000 0.00 0.00 36.15 2.10
421 425 3.455990 TTGCGTGCCCGTTTCTATATA 57.544 42.857 0.00 0.00 36.15 0.86
426 430 5.297278 TGCGTGCCCGTTTCTATATATTTTT 59.703 36.000 0.00 0.00 36.15 1.94
459 463 5.195001 TGTGTGTTAGAAAATTGCCTTCC 57.805 39.130 0.00 0.00 0.00 3.46
525 533 7.978414 TCTGTAACATCATCTTTGTTGCAAAAA 59.022 29.630 0.00 0.00 45.00 1.94
530 538 8.441312 ACATCATCTTTGTTGCAAAAATTTCT 57.559 26.923 2.11 0.00 0.00 2.52
532 540 9.377383 CATCATCTTTGTTGCAAAAATTTCTTC 57.623 29.630 2.11 0.00 0.00 2.87
533 541 7.918643 TCATCTTTGTTGCAAAAATTTCTTCC 58.081 30.769 2.11 0.00 0.00 3.46
534 542 6.343226 TCTTTGTTGCAAAAATTTCTTCCG 57.657 33.333 2.11 0.00 0.00 4.30
535 543 4.528531 TTGTTGCAAAAATTTCTTCCGC 57.471 36.364 0.00 0.00 0.00 5.54
536 544 3.525537 TGTTGCAAAAATTTCTTCCGCA 58.474 36.364 0.00 0.00 0.00 5.69
538 546 4.528531 TTGCAAAAATTTCTTCCGCAAC 57.471 36.364 0.00 0.00 33.31 4.17
546 565 6.976636 AAATTTCTTCCGCAACTTGAAAAA 57.023 29.167 0.00 0.00 31.71 1.94
579 598 5.740569 CGAAAAAGATGCAACATCACCTATG 59.259 40.000 10.02 0.00 41.74 2.23
593 612 7.894376 CATCACCTATGTTGCAAAAGATTTT 57.106 32.000 0.00 0.00 0.00 1.82
594 613 8.314143 CATCACCTATGTTGCAAAAGATTTTT 57.686 30.769 0.00 0.00 0.00 1.94
595 614 7.712264 TCACCTATGTTGCAAAAGATTTTTG 57.288 32.000 0.00 9.33 0.00 2.44
606 625 6.295039 CAAAAGATTTTTGCAACATGAGCT 57.705 33.333 0.00 0.00 0.00 4.09
607 626 6.360329 CAAAAGATTTTTGCAACATGAGCTC 58.640 36.000 6.82 6.82 0.00 4.09
608 627 5.464030 AAGATTTTTGCAACATGAGCTCT 57.536 34.783 16.19 0.00 0.00 4.09
650 669 9.625747 TGTATGACTATCCTTTTGCAATTATGA 57.374 29.630 0.00 0.00 0.00 2.15
657 676 3.438360 CTTTTGCAATTATGAGGACGGC 58.562 45.455 0.00 0.00 0.00 5.68
678 697 1.135112 GTTGGGCGTTGGATGATTTCC 60.135 52.381 0.00 0.00 45.69 3.13
725 744 4.903010 TTAAGATCCGCCGGCCGC 62.903 66.667 22.85 14.90 35.03 6.53
750 769 4.117685 CGTAGCACACCCCTTTATAGAAC 58.882 47.826 0.00 0.00 0.00 3.01
751 770 4.382254 CGTAGCACACCCCTTTATAGAACA 60.382 45.833 0.00 0.00 0.00 3.18
752 771 4.650972 AGCACACCCCTTTATAGAACAA 57.349 40.909 0.00 0.00 0.00 2.83
753 772 4.589908 AGCACACCCCTTTATAGAACAAG 58.410 43.478 0.00 0.00 0.00 3.16
756 775 5.941647 GCACACCCCTTTATAGAACAAGTAA 59.058 40.000 0.00 0.00 0.00 2.24
757 776 6.431852 GCACACCCCTTTATAGAACAAGTAAA 59.568 38.462 0.00 0.00 0.00 2.01
758 777 7.040271 GCACACCCCTTTATAGAACAAGTAAAA 60.040 37.037 0.00 0.00 0.00 1.52
759 778 8.852135 CACACCCCTTTATAGAACAAGTAAAAA 58.148 33.333 0.00 0.00 0.00 1.94
795 814 8.924511 TCTCTTATATATTTCTTTGGGCCTTG 57.075 34.615 4.53 0.00 0.00 3.61
802 821 4.535526 TTTCTTTGGGCCTTGCTATTTC 57.464 40.909 4.53 0.00 0.00 2.17
812 834 4.262851 GGCCTTGCTATTTCCCTTGAAAAA 60.263 41.667 0.00 0.00 43.37 1.94
825 847 4.706476 CCCTTGAAAAATAGCAGATCCACA 59.294 41.667 0.00 0.00 0.00 4.17
867 889 2.609610 AAGCCCACCCGAGCCTAA 60.610 61.111 0.00 0.00 0.00 2.69
868 890 2.967946 AAGCCCACCCGAGCCTAAC 61.968 63.158 0.00 0.00 0.00 2.34
869 891 4.484872 GCCCACCCGAGCCTAACC 62.485 72.222 0.00 0.00 0.00 2.85
870 892 3.793888 CCCACCCGAGCCTAACCC 61.794 72.222 0.00 0.00 0.00 4.11
871 893 3.006728 CCACCCGAGCCTAACCCA 61.007 66.667 0.00 0.00 0.00 4.51
872 894 2.598787 CCACCCGAGCCTAACCCAA 61.599 63.158 0.00 0.00 0.00 4.12
873 895 1.607612 CACCCGAGCCTAACCCAAT 59.392 57.895 0.00 0.00 0.00 3.16
909 931 4.660938 GCCCACCCACCCACTCAC 62.661 72.222 0.00 0.00 0.00 3.51
1274 1331 1.073199 CGCCCCTTCAACCACTTCT 59.927 57.895 0.00 0.00 0.00 2.85
1437 1494 2.226437 CGAGGATTCTGTTGGTTGGTTG 59.774 50.000 0.00 0.00 0.00 3.77
1466 1523 1.880027 ACTGATCCGTTTGCTTTGTCC 59.120 47.619 0.00 0.00 0.00 4.02
1470 1527 1.008995 CCGTTTGCTTTGTCCGTGG 60.009 57.895 0.00 0.00 0.00 4.94
1471 1528 1.657181 CGTTTGCTTTGTCCGTGGC 60.657 57.895 0.00 0.00 0.00 5.01
1604 1662 4.286297 AGTATGCCACTTTGCACTTCTA 57.714 40.909 0.00 0.00 45.48 2.10
1613 1671 4.033358 CACTTTGCACTTCTATTCCGCTAG 59.967 45.833 0.00 0.00 0.00 3.42
1792 1854 0.039165 GTTGTGCTGCAAGGCTAACC 60.039 55.000 2.77 0.00 37.83 2.85
1819 1882 6.810182 GCTGTAAATGTCTGAATCTGCAATTT 59.190 34.615 0.00 0.00 0.00 1.82
1872 1936 4.697514 CCTCGAATGATGTACTGATGGTT 58.302 43.478 0.00 0.00 0.00 3.67
1928 1992 1.712977 CTGCATTGCCTCCTTCTCGC 61.713 60.000 6.12 0.00 0.00 5.03
2008 2084 3.119708 GCAAAGAGGCATAAGGTGACAAG 60.120 47.826 0.00 0.00 38.81 3.16
2017 2093 5.423015 GCATAAGGTGACAAGAGAATCAGA 58.577 41.667 0.00 0.00 37.82 3.27
2018 2094 5.877012 GCATAAGGTGACAAGAGAATCAGAA 59.123 40.000 0.00 0.00 37.82 3.02
2019 2095 6.372659 GCATAAGGTGACAAGAGAATCAGAAA 59.627 38.462 0.00 0.00 37.82 2.52
2020 2096 7.094634 GCATAAGGTGACAAGAGAATCAGAAAA 60.095 37.037 0.00 0.00 37.82 2.29
2021 2097 8.786898 CATAAGGTGACAAGAGAATCAGAAAAA 58.213 33.333 0.00 0.00 37.82 1.94
2046 2122 0.397564 TGGTTCACTCTGCATGCTCA 59.602 50.000 20.33 3.99 0.00 4.26
2050 2126 2.745821 GTTCACTCTGCATGCTCATTGA 59.254 45.455 20.33 13.15 0.00 2.57
2055 2131 0.815095 CTGCATGCTCATTGAAGGCA 59.185 50.000 20.33 3.39 40.32 4.75
2158 2234 2.101582 CCTGTGTGGTACATCTAGCTCC 59.898 54.545 0.00 0.00 44.52 4.70
2227 2303 2.707791 TGGTCCATTCCCTCATCTCATC 59.292 50.000 0.00 0.00 0.00 2.92
2313 2390 6.201226 TGTTTTGACTGTTATTTGTGCTGA 57.799 33.333 0.00 0.00 0.00 4.26
2316 2393 6.449635 TTTGACTGTTATTTGTGCTGACTT 57.550 33.333 0.00 0.00 0.00 3.01
2424 2501 2.202743 GGTATCTGCGCACGCTCA 60.203 61.111 16.77 2.73 42.51 4.26
2476 2553 9.590451 CATGATATGCTAAAAGTTTGTGGATTT 57.410 29.630 0.00 0.00 0.00 2.17
2561 2638 3.726291 TTGCCTAGCAAAAGGAAACAC 57.274 42.857 0.00 0.00 45.96 3.32
2638 2715 6.284459 AGCTAGATGTATGAACCTGCTTAAC 58.716 40.000 0.00 0.00 0.00 2.01
2645 2722 1.001633 TGAACCTGCTTAACGTCCCTC 59.998 52.381 0.00 0.00 0.00 4.30
2716 2793 8.589338 CATAAAGCCATAATAGTCTGGTACTCT 58.411 37.037 0.00 0.00 39.80 3.24
2740 2861 8.482128 TCTGTTCCAAATTTGAACTAAAACCAT 58.518 29.630 19.86 0.00 0.00 3.55
2741 2862 8.430801 TGTTCCAAATTTGAACTAAAACCATG 57.569 30.769 19.86 0.00 0.00 3.66
2742 2863 8.260818 TGTTCCAAATTTGAACTAAAACCATGA 58.739 29.630 19.86 0.62 0.00 3.07
2743 2864 8.547894 GTTCCAAATTTGAACTAAAACCATGAC 58.452 33.333 19.86 0.00 0.00 3.06
2744 2865 8.017418 TCCAAATTTGAACTAAAACCATGACT 57.983 30.769 19.86 0.00 0.00 3.41
2745 2866 9.137459 TCCAAATTTGAACTAAAACCATGACTA 57.863 29.630 19.86 0.00 0.00 2.59
2746 2867 9.927668 CCAAATTTGAACTAAAACCATGACTAT 57.072 29.630 19.86 0.00 0.00 2.12
2757 2878 2.533266 CATGACTATGGAACGGAGGG 57.467 55.000 0.00 0.00 0.00 4.30
2758 2879 2.039418 CATGACTATGGAACGGAGGGA 58.961 52.381 0.00 0.00 0.00 4.20
2759 2880 1.776662 TGACTATGGAACGGAGGGAG 58.223 55.000 0.00 0.00 0.00 4.30
2760 2881 1.006758 TGACTATGGAACGGAGGGAGT 59.993 52.381 0.00 0.00 0.00 3.85
2761 2882 2.242965 TGACTATGGAACGGAGGGAGTA 59.757 50.000 0.00 0.00 0.00 2.59
2762 2883 2.622470 GACTATGGAACGGAGGGAGTAC 59.378 54.545 0.00 0.00 0.00 2.73
2763 2884 2.244252 ACTATGGAACGGAGGGAGTACT 59.756 50.000 0.00 0.00 0.00 2.73
2764 2885 2.249309 ATGGAACGGAGGGAGTACTT 57.751 50.000 0.00 0.00 0.00 2.24
2765 2886 1.263356 TGGAACGGAGGGAGTACTTG 58.737 55.000 0.00 0.00 0.00 3.16
2766 2887 1.203087 TGGAACGGAGGGAGTACTTGA 60.203 52.381 0.00 0.00 0.00 3.02
2767 2888 2.108970 GGAACGGAGGGAGTACTTGAT 58.891 52.381 0.00 0.00 0.00 2.57
2768 2889 2.500504 GGAACGGAGGGAGTACTTGATT 59.499 50.000 0.00 0.00 0.00 2.57
2769 2890 3.703052 GGAACGGAGGGAGTACTTGATTA 59.297 47.826 0.00 0.00 0.00 1.75
2770 2891 4.161001 GGAACGGAGGGAGTACTTGATTAA 59.839 45.833 0.00 0.00 0.00 1.40
2771 2892 4.732672 ACGGAGGGAGTACTTGATTAAC 57.267 45.455 0.00 0.00 0.00 2.01
2772 2893 3.450096 ACGGAGGGAGTACTTGATTAACC 59.550 47.826 0.00 0.00 0.00 2.85
2914 3070 7.988737 TCATAGTTTGCAGTTTGATATTCTGG 58.011 34.615 0.00 0.00 0.00 3.86
3027 3185 2.000447 GCGTACAATCAGTGGAAGTCC 59.000 52.381 0.00 0.00 0.00 3.85
3091 3249 3.138304 AGCACTTGTACTTCGCAATTGA 58.862 40.909 10.34 0.00 31.03 2.57
3094 3252 4.321745 GCACTTGTACTTCGCAATTGATTG 59.678 41.667 10.34 0.00 40.66 2.67
3117 3275 4.040952 GCATTACATCCCTGTCTAGTCCAT 59.959 45.833 0.00 0.00 36.79 3.41
3150 3308 3.627577 ACTGCCCATGAGCTAAAATTACG 59.372 43.478 0.00 0.00 0.00 3.18
3159 3325 5.408356 TGAGCTAAAATTACGTCTCTGGTC 58.592 41.667 0.00 0.00 0.00 4.02
3169 3335 3.958018 ACGTCTCTGGTCTGTCTTAGAT 58.042 45.455 0.00 0.00 37.83 1.98
3248 3423 1.222661 CCCCCACCGGCTAACTAAC 59.777 63.158 0.00 0.00 0.00 2.34
3265 3440 7.338957 GCTAACTAACTTAACCTGAGACCTCTA 59.661 40.741 0.00 0.00 0.00 2.43
3266 3441 7.465353 AACTAACTTAACCTGAGACCTCTAC 57.535 40.000 0.00 0.00 0.00 2.59
3267 3442 6.792424 ACTAACTTAACCTGAGACCTCTACT 58.208 40.000 0.00 0.00 0.00 2.57
3268 3443 7.240167 ACTAACTTAACCTGAGACCTCTACTT 58.760 38.462 0.00 0.00 0.00 2.24
3301 3476 4.485554 CTGAAAGCCCGAGACTCG 57.514 61.111 18.08 18.08 40.07 4.18
3302 3477 1.587054 CTGAAAGCCCGAGACTCGT 59.413 57.895 22.61 4.33 38.40 4.18
3303 3478 0.456995 CTGAAAGCCCGAGACTCGTC 60.457 60.000 22.61 13.67 38.40 4.20
3304 3479 1.514443 GAAAGCCCGAGACTCGTCG 60.514 63.158 22.61 13.44 38.40 5.12
3310 3485 4.747543 CGAGACTCGTCGGAAGTG 57.252 61.111 16.83 0.00 36.26 3.16
3311 3486 1.867615 CGAGACTCGTCGGAAGTGT 59.132 57.895 16.83 0.00 36.26 3.55
3312 3487 0.237761 CGAGACTCGTCGGAAGTGTT 59.762 55.000 16.83 0.00 36.26 3.32
3313 3488 1.687628 GAGACTCGTCGGAAGTGTTG 58.312 55.000 0.53 0.00 34.09 3.33
3314 3489 1.001597 GAGACTCGTCGGAAGTGTTGT 60.002 52.381 0.53 0.00 34.09 3.32
3315 3490 1.129326 GACTCGTCGGAAGTGTTGTG 58.871 55.000 0.53 0.00 0.00 3.33
3316 3491 0.458669 ACTCGTCGGAAGTGTTGTGT 59.541 50.000 0.00 0.00 0.00 3.72
3317 3492 0.852777 CTCGTCGGAAGTGTTGTGTG 59.147 55.000 0.00 0.00 0.00 3.82
3378 3559 4.361971 TGGCTCCGTCCCTCGTCT 62.362 66.667 0.00 0.00 37.94 4.18
3402 3583 6.698359 TTTTTGATATGTTTTGTAAGGCGC 57.302 33.333 0.00 0.00 0.00 6.53
3403 3584 5.637006 TTTGATATGTTTTGTAAGGCGCT 57.363 34.783 7.64 0.00 0.00 5.92
3465 3647 1.977594 CTGTAAACGGCGGTGGCATC 61.978 60.000 13.24 0.00 42.47 3.91
3467 3649 1.078072 TAAACGGCGGTGGCATCAT 60.078 52.632 13.24 0.00 42.47 2.45
3468 3650 1.372838 TAAACGGCGGTGGCATCATG 61.373 55.000 13.24 0.00 42.47 3.07
3635 3821 4.294416 ACTAGACGACCATTTCATCTCG 57.706 45.455 0.00 0.00 0.00 4.04
3677 3863 5.243730 TGCCCTGTCTTTTGGATAGAAAAAG 59.756 40.000 2.90 2.90 43.11 2.27
3678 3864 5.243954 GCCCTGTCTTTTGGATAGAAAAAGT 59.756 40.000 8.12 0.00 42.59 2.66
3681 3867 6.642540 CCTGTCTTTTGGATAGAAAAAGTTGC 59.357 38.462 8.12 2.80 42.59 4.17
3730 3917 1.287730 CTCTCGACCAAGTGCACTGC 61.288 60.000 22.49 9.53 0.00 4.40
3765 3954 1.377202 CGCTTTAGCCTGCCTCCAA 60.377 57.895 0.00 0.00 37.91 3.53
3767 3956 1.315981 GCTTTAGCCTGCCTCCAACC 61.316 60.000 0.00 0.00 34.31 3.77
3849 4040 0.881118 TTTTCTGATGCTTGGGTCGC 59.119 50.000 0.00 0.00 0.00 5.19
3865 4056 2.719354 GCCACTTTTCACGCCGTT 59.281 55.556 0.00 0.00 0.00 4.44
3986 4177 1.665679 CTGCCAAGATATTTGCGTCGT 59.334 47.619 0.00 0.00 0.00 4.34
4018 4209 3.449746 AATGCAGGCTGGGTAGTTTTA 57.550 42.857 17.64 0.00 0.00 1.52
4045 4236 2.088969 CACTCTTTTAAAATGCGTGCGC 59.911 45.455 9.85 9.85 42.35 6.09
4046 4237 2.031157 ACTCTTTTAAAATGCGTGCGCT 60.031 40.909 17.49 0.00 42.51 5.92
4047 4238 2.315011 TCTTTTAAAATGCGTGCGCTG 58.685 42.857 17.49 1.66 42.51 5.18
4048 4239 0.781191 TTTTAAAATGCGTGCGCTGC 59.219 45.000 17.49 16.67 42.51 5.25
4067 4258 2.098280 TGCTGCGCAAACTTAGAAAACA 59.902 40.909 13.05 0.00 34.76 2.83
4098 4289 0.729140 GGCATGTTCAAAAGTCGCCG 60.729 55.000 0.00 0.00 0.00 6.46
4103 4294 1.228533 GTTCAAAAGTCGCCGGGTAA 58.771 50.000 2.18 0.00 0.00 2.85
4104 4295 1.603326 GTTCAAAAGTCGCCGGGTAAA 59.397 47.619 2.18 0.00 0.00 2.01
4105 4296 2.188062 TCAAAAGTCGCCGGGTAAAT 57.812 45.000 2.18 0.00 0.00 1.40
4106 4297 1.807742 TCAAAAGTCGCCGGGTAAATG 59.192 47.619 2.18 0.00 0.00 2.32
4107 4298 1.135517 CAAAAGTCGCCGGGTAAATGG 60.136 52.381 2.18 0.00 0.00 3.16
4108 4299 0.037160 AAAGTCGCCGGGTAAATGGT 59.963 50.000 2.18 0.00 0.00 3.55
4109 4300 0.903942 AAGTCGCCGGGTAAATGGTA 59.096 50.000 2.18 0.00 0.00 3.25
4110 4301 0.903942 AGTCGCCGGGTAAATGGTAA 59.096 50.000 2.18 0.00 0.00 2.85
4111 4302 1.487558 AGTCGCCGGGTAAATGGTAAT 59.512 47.619 2.18 0.00 0.00 1.89
4112 4303 1.869132 GTCGCCGGGTAAATGGTAATC 59.131 52.381 2.18 0.00 0.00 1.75
4113 4304 0.863144 CGCCGGGTAAATGGTAATCG 59.137 55.000 2.18 0.00 0.00 3.34
4114 4305 1.232119 GCCGGGTAAATGGTAATCGG 58.768 55.000 2.18 0.00 39.07 4.18
4115 4306 1.202675 GCCGGGTAAATGGTAATCGGA 60.203 52.381 2.18 0.00 38.42 4.55
4116 4307 2.762745 CCGGGTAAATGGTAATCGGAG 58.237 52.381 0.00 0.00 38.42 4.63
4117 4308 2.140717 CGGGTAAATGGTAATCGGAGC 58.859 52.381 0.00 0.00 0.00 4.70
4118 4309 2.484065 CGGGTAAATGGTAATCGGAGCA 60.484 50.000 0.00 0.00 0.00 4.26
4119 4310 3.751518 GGGTAAATGGTAATCGGAGCAT 58.248 45.455 0.00 0.00 39.18 3.79
4120 4311 4.142038 GGGTAAATGGTAATCGGAGCATT 58.858 43.478 5.01 5.01 46.69 3.56
4121 4312 4.023193 GGGTAAATGGTAATCGGAGCATTG 60.023 45.833 9.87 0.00 44.60 2.82
4122 4313 3.715628 AAATGGTAATCGGAGCATTGC 57.284 42.857 0.00 0.00 44.60 3.56
4123 4314 2.346766 ATGGTAATCGGAGCATTGCA 57.653 45.000 11.91 0.00 33.84 4.08
4124 4315 1.667236 TGGTAATCGGAGCATTGCAG 58.333 50.000 11.91 1.99 0.00 4.41
4125 4316 0.947244 GGTAATCGGAGCATTGCAGG 59.053 55.000 11.91 0.00 0.00 4.85
4126 4317 0.308993 GTAATCGGAGCATTGCAGGC 59.691 55.000 11.91 4.40 0.00 4.85
4127 4318 0.819259 TAATCGGAGCATTGCAGGCC 60.819 55.000 11.91 8.15 0.00 5.19
4130 4321 3.512516 GGAGCATTGCAGGCCGAC 61.513 66.667 11.91 0.00 0.00 4.79
4131 4322 3.512516 GAGCATTGCAGGCCGACC 61.513 66.667 11.91 0.00 0.00 4.79
4132 4323 4.349503 AGCATTGCAGGCCGACCA 62.350 61.111 11.91 0.00 39.06 4.02
4133 4324 3.142838 GCATTGCAGGCCGACCAT 61.143 61.111 3.15 0.00 39.06 3.55
4134 4325 2.802792 CATTGCAGGCCGACCATG 59.197 61.111 0.00 0.00 39.06 3.66
4135 4326 1.750018 CATTGCAGGCCGACCATGA 60.750 57.895 0.00 0.00 39.06 3.07
4136 4327 1.452651 ATTGCAGGCCGACCATGAG 60.453 57.895 0.00 0.00 39.06 2.90
4137 4328 1.913951 ATTGCAGGCCGACCATGAGA 61.914 55.000 0.00 0.00 39.06 3.27
4138 4329 1.913951 TTGCAGGCCGACCATGAGAT 61.914 55.000 0.00 0.00 39.06 2.75
4139 4330 1.890979 GCAGGCCGACCATGAGATG 60.891 63.158 0.00 0.00 39.06 2.90
4140 4331 1.890979 CAGGCCGACCATGAGATGC 60.891 63.158 0.00 0.00 39.06 3.91
4141 4332 2.592861 GGCCGACCATGAGATGCC 60.593 66.667 0.00 0.00 35.26 4.40
4142 4333 2.592861 GCCGACCATGAGATGCCC 60.593 66.667 0.00 0.00 0.00 5.36
4143 4334 2.280389 CCGACCATGAGATGCCCG 60.280 66.667 0.00 0.00 0.00 6.13
4144 4335 2.969238 CGACCATGAGATGCCCGC 60.969 66.667 0.00 0.00 0.00 6.13
4145 4336 2.190313 GACCATGAGATGCCCGCA 59.810 61.111 0.00 0.00 0.00 5.69
4146 4337 1.228063 GACCATGAGATGCCCGCAT 60.228 57.895 0.82 0.82 39.69 4.73
4149 4340 4.794199 ATGAGATGCCCGCATGAG 57.206 55.556 6.96 0.00 36.70 2.90
4150 4341 2.139500 ATGAGATGCCCGCATGAGA 58.861 52.632 6.96 0.00 36.70 3.27
4151 4342 0.691332 ATGAGATGCCCGCATGAGAT 59.309 50.000 6.96 0.00 36.70 2.75
4152 4343 0.250166 TGAGATGCCCGCATGAGATG 60.250 55.000 6.96 0.00 36.70 2.90
4153 4344 0.250209 GAGATGCCCGCATGAGATGT 60.250 55.000 6.96 0.00 36.70 3.06
4154 4345 0.534427 AGATGCCCGCATGAGATGTG 60.534 55.000 6.96 0.00 40.37 3.21
4155 4346 2.126417 GATGCCCGCATGAGATGTGC 62.126 60.000 6.96 0.00 39.38 4.57
4156 4347 2.515523 GCCCGCATGAGATGTGCT 60.516 61.111 0.00 0.00 40.37 4.40
4157 4348 1.227645 GCCCGCATGAGATGTGCTA 60.228 57.895 0.00 0.00 40.37 3.49
4158 4349 1.226686 GCCCGCATGAGATGTGCTAG 61.227 60.000 0.00 0.00 40.37 3.42
4159 4350 0.390492 CCCGCATGAGATGTGCTAGA 59.610 55.000 0.00 0.00 40.37 2.43
4160 4351 1.604947 CCCGCATGAGATGTGCTAGAG 60.605 57.143 0.00 0.00 40.37 2.43
4161 4352 1.604947 CCGCATGAGATGTGCTAGAGG 60.605 57.143 0.00 0.00 40.37 3.69
4162 4353 1.339291 CGCATGAGATGTGCTAGAGGA 59.661 52.381 0.00 0.00 40.37 3.71
4163 4354 2.753296 GCATGAGATGTGCTAGAGGAC 58.247 52.381 0.00 0.00 39.45 3.85
4164 4355 2.364970 GCATGAGATGTGCTAGAGGACT 59.635 50.000 0.00 0.00 39.45 3.85
4165 4356 3.799574 GCATGAGATGTGCTAGAGGACTG 60.800 52.174 0.00 0.00 39.45 3.51
4166 4357 3.093057 TGAGATGTGCTAGAGGACTGT 57.907 47.619 2.75 0.00 37.28 3.55
4167 4358 3.020274 TGAGATGTGCTAGAGGACTGTC 58.980 50.000 0.00 0.00 37.28 3.51
4168 4359 2.020720 AGATGTGCTAGAGGACTGTCG 58.979 52.381 1.07 0.00 37.28 4.35
4169 4360 0.457851 ATGTGCTAGAGGACTGTCGC 59.542 55.000 1.07 0.00 37.28 5.19
4170 4361 1.139947 GTGCTAGAGGACTGTCGCC 59.860 63.158 1.07 0.00 33.32 5.54
4171 4362 2.407428 TGCTAGAGGACTGTCGCCG 61.407 63.158 1.07 0.00 0.00 6.46
4172 4363 2.408241 GCTAGAGGACTGTCGCCGT 61.408 63.158 1.07 0.00 0.00 5.68
4173 4364 1.722677 CTAGAGGACTGTCGCCGTC 59.277 63.158 1.07 0.00 0.00 4.79
4174 4365 0.745128 CTAGAGGACTGTCGCCGTCT 60.745 60.000 1.07 4.16 0.00 4.18
4175 4366 1.025113 TAGAGGACTGTCGCCGTCTG 61.025 60.000 1.07 0.00 0.00 3.51
4176 4367 2.597805 AGGACTGTCGCCGTCTGT 60.598 61.111 1.07 0.00 0.00 3.41
4177 4368 2.143594 GAGGACTGTCGCCGTCTGTT 62.144 60.000 1.07 0.00 0.00 3.16
4178 4369 2.022129 GGACTGTCGCCGTCTGTTG 61.022 63.158 1.07 0.00 0.00 3.33
4179 4370 2.658707 GACTGTCGCCGTCTGTTGC 61.659 63.158 0.00 0.00 0.00 4.17
4180 4371 2.661537 CTGTCGCCGTCTGTTGCA 60.662 61.111 0.00 0.00 0.00 4.08
4181 4372 2.202946 TGTCGCCGTCTGTTGCAA 60.203 55.556 0.00 0.00 0.00 4.08
4182 4373 2.162921 CTGTCGCCGTCTGTTGCAAG 62.163 60.000 0.00 0.00 0.00 4.01
4183 4374 3.345808 TCGCCGTCTGTTGCAAGC 61.346 61.111 0.00 0.00 0.00 4.01
4184 4375 3.648982 CGCCGTCTGTTGCAAGCA 61.649 61.111 0.00 0.02 0.00 3.91
4185 4376 2.253452 GCCGTCTGTTGCAAGCAG 59.747 61.111 17.67 17.67 35.43 4.24
4186 4377 2.949106 CCGTCTGTTGCAAGCAGG 59.051 61.111 21.19 9.55 34.89 4.85
4187 4378 1.597854 CCGTCTGTTGCAAGCAGGA 60.598 57.895 21.19 7.53 34.89 3.86
4188 4379 1.571460 CGTCTGTTGCAAGCAGGAC 59.429 57.895 21.19 15.49 34.89 3.85
4189 4380 1.845809 CGTCTGTTGCAAGCAGGACC 61.846 60.000 21.19 12.66 34.89 4.46
4190 4381 0.819259 GTCTGTTGCAAGCAGGACCA 60.819 55.000 21.19 6.39 34.89 4.02
4191 4382 0.819259 TCTGTTGCAAGCAGGACCAC 60.819 55.000 21.19 1.66 34.89 4.16
4192 4383 1.799258 CTGTTGCAAGCAGGACCACC 61.799 60.000 16.58 0.00 0.00 4.61
4194 4385 1.228245 TTGCAAGCAGGACCACCTC 60.228 57.895 0.00 0.00 45.94 3.85
4195 4386 1.993701 TTGCAAGCAGGACCACCTCA 61.994 55.000 0.00 0.00 45.94 3.86
4196 4387 1.001641 GCAAGCAGGACCACCTCAT 60.002 57.895 0.00 0.00 45.94 2.90
4197 4388 1.028868 GCAAGCAGGACCACCTCATC 61.029 60.000 0.00 0.00 45.94 2.92
4198 4389 0.617413 CAAGCAGGACCACCTCATCT 59.383 55.000 0.00 0.00 45.94 2.90
4199 4390 0.617413 AAGCAGGACCACCTCATCTG 59.383 55.000 0.00 0.00 45.94 2.90
4200 4391 1.451028 GCAGGACCACCTCATCTGC 60.451 63.158 0.00 0.00 45.94 4.26
4201 4392 1.985614 CAGGACCACCTCATCTGCA 59.014 57.895 0.00 0.00 45.94 4.41
4202 4393 0.325933 CAGGACCACCTCATCTGCAA 59.674 55.000 0.00 0.00 45.94 4.08
4203 4394 0.617413 AGGACCACCTCATCTGCAAG 59.383 55.000 0.00 0.00 44.13 4.01
4204 4395 1.832922 AGGACCACCTCATCTGCAAGA 60.833 52.381 0.00 0.00 46.63 3.02
4205 4396 4.002068 AGGACCACCTCATCTGCAAGAC 62.002 54.545 0.00 0.00 45.66 3.01
4213 4404 3.691342 TCTGCAAGACGGACGGGG 61.691 66.667 0.00 0.00 38.67 5.73
4214 4405 4.760047 CTGCAAGACGGACGGGGG 62.760 72.222 0.00 0.00 34.07 5.40
4216 4407 4.452733 GCAAGACGGACGGGGGAG 62.453 72.222 0.00 0.00 0.00 4.30
4217 4408 2.678934 CAAGACGGACGGGGGAGA 60.679 66.667 0.00 0.00 0.00 3.71
4218 4409 2.679287 AAGACGGACGGGGGAGAC 60.679 66.667 0.00 0.00 0.00 3.36
4223 4414 4.755507 GGACGGGGGAGACGACCT 62.756 72.222 0.00 0.00 41.66 3.85
4224 4415 3.450115 GACGGGGGAGACGACCTG 61.450 72.222 0.00 0.00 39.10 4.00
4227 4418 3.462678 GGGGGAGACGACCTGCTC 61.463 72.222 0.00 0.00 33.27 4.26
4228 4419 2.680352 GGGGAGACGACCTGCTCA 60.680 66.667 0.00 0.00 33.34 4.26
4229 4420 2.283529 GGGGAGACGACCTGCTCAA 61.284 63.158 0.00 0.00 33.34 3.02
4230 4421 1.079750 GGGAGACGACCTGCTCAAC 60.080 63.158 0.00 0.00 33.27 3.18
4231 4422 1.666011 GGAGACGACCTGCTCAACA 59.334 57.895 0.00 0.00 32.83 3.33
4232 4423 0.389166 GGAGACGACCTGCTCAACAG 60.389 60.000 0.00 0.00 46.77 3.16
4233 4424 1.005630 AGACGACCTGCTCAACAGC 60.006 57.895 0.00 0.00 45.78 4.40
4241 4432 4.395583 GCTCAACAGCAGCACCGC 62.396 66.667 0.00 0.00 46.06 5.68
4242 4433 3.730761 CTCAACAGCAGCACCGCC 61.731 66.667 0.00 0.00 0.00 6.13
4277 4468 2.348620 CCAGCACTGCAGCCTGTA 59.651 61.111 24.83 0.00 34.23 2.74
4278 4469 1.744368 CCAGCACTGCAGCCTGTAG 60.744 63.158 24.83 8.37 36.12 2.74
4279 4470 1.744368 CAGCACTGCAGCCTGTAGG 60.744 63.158 20.95 4.58 34.23 3.18
4280 4471 2.219875 AGCACTGCAGCCTGTAGGT 61.220 57.895 15.27 0.00 34.23 3.08
4281 4472 1.743252 GCACTGCAGCCTGTAGGTC 60.743 63.158 15.27 1.64 34.23 3.85
4282 4473 1.446792 CACTGCAGCCTGTAGGTCG 60.447 63.158 15.27 0.00 34.23 4.79
4283 4474 1.908793 ACTGCAGCCTGTAGGTCGT 60.909 57.895 15.27 0.00 34.23 4.34
4284 4475 1.446792 CTGCAGCCTGTAGGTCGTG 60.447 63.158 0.00 0.00 37.57 4.35
4285 4476 2.815647 GCAGCCTGTAGGTCGTGC 60.816 66.667 0.00 3.46 37.57 5.34
4286 4477 2.125512 CAGCCTGTAGGTCGTGCC 60.126 66.667 0.00 0.00 37.57 5.01
4287 4478 3.391382 AGCCTGTAGGTCGTGCCC 61.391 66.667 0.00 0.00 38.26 5.36
4288 4479 4.468689 GCCTGTAGGTCGTGCCCC 62.469 72.222 0.00 0.00 38.26 5.80
4289 4480 3.782443 CCTGTAGGTCGTGCCCCC 61.782 72.222 0.00 0.00 38.26 5.40
4290 4481 4.143333 CTGTAGGTCGTGCCCCCG 62.143 72.222 0.00 0.00 38.26 5.73
4292 4483 4.446413 GTAGGTCGTGCCCCCGTG 62.446 72.222 0.00 0.00 38.26 4.94
4299 4490 4.338710 GTGCCCCCGTGGTGCTTA 62.339 66.667 0.00 0.00 36.04 3.09
4300 4491 3.334891 TGCCCCCGTGGTGCTTAT 61.335 61.111 0.00 0.00 36.04 1.73
4301 4492 2.828549 GCCCCCGTGGTGCTTATG 60.829 66.667 0.00 0.00 36.04 1.90
4302 4493 2.828549 CCCCCGTGGTGCTTATGC 60.829 66.667 0.00 0.00 40.20 3.14
4303 4494 2.272146 CCCCGTGGTGCTTATGCT 59.728 61.111 1.96 0.00 40.48 3.79
4304 4495 2.114670 CCCCGTGGTGCTTATGCTG 61.115 63.158 1.96 0.00 40.48 4.41
4305 4496 2.764314 CCCGTGGTGCTTATGCTGC 61.764 63.158 1.96 0.00 40.48 5.25
4306 4497 2.039974 CCGTGGTGCTTATGCTGCA 61.040 57.895 4.13 4.13 40.48 4.41
4307 4498 1.426621 CGTGGTGCTTATGCTGCAG 59.573 57.895 10.11 10.11 41.41 4.41
4308 4499 1.805254 GTGGTGCTTATGCTGCAGG 59.195 57.895 17.12 0.00 41.41 4.85
4309 4500 2.048023 TGGTGCTTATGCTGCAGGC 61.048 57.895 17.12 10.46 41.41 4.85
4310 4501 2.779033 GGTGCTTATGCTGCAGGCC 61.779 63.158 17.12 0.00 41.41 5.19
4311 4502 2.440796 TGCTTATGCTGCAGGCCC 60.441 61.111 17.12 0.00 40.92 5.80
4312 4503 3.589881 GCTTATGCTGCAGGCCCG 61.590 66.667 17.12 0.00 40.92 6.13
4313 4504 3.589881 CTTATGCTGCAGGCCCGC 61.590 66.667 17.12 3.21 40.92 6.13
4343 4534 3.437795 GGCGCTGCTGCAAGACAT 61.438 61.111 16.29 0.00 39.64 3.06
4344 4535 2.099831 GCGCTGCTGCAAGACATC 59.900 61.111 16.29 0.00 39.64 3.06
4345 4536 2.398429 CGCTGCTGCAAGACATCG 59.602 61.111 16.29 0.00 39.64 3.84
4346 4537 2.096442 CGCTGCTGCAAGACATCGA 61.096 57.895 16.29 0.00 39.64 3.59
4347 4538 1.629345 CGCTGCTGCAAGACATCGAA 61.629 55.000 16.29 0.00 39.64 3.71
4348 4539 0.518636 GCTGCTGCAAGACATCGAAA 59.481 50.000 11.11 0.00 39.41 3.46
4349 4540 1.131883 GCTGCTGCAAGACATCGAAAT 59.868 47.619 11.11 0.00 39.41 2.17
4350 4541 2.415090 GCTGCTGCAAGACATCGAAATT 60.415 45.455 11.11 0.00 39.41 1.82
4351 4542 3.168963 CTGCTGCAAGACATCGAAATTG 58.831 45.455 3.02 0.00 34.07 2.32
4352 4543 2.553602 TGCTGCAAGACATCGAAATTGT 59.446 40.909 0.00 0.00 34.07 2.71
4353 4544 3.750652 TGCTGCAAGACATCGAAATTGTA 59.249 39.130 0.00 0.00 34.07 2.41
4354 4545 4.395854 TGCTGCAAGACATCGAAATTGTAT 59.604 37.500 0.00 0.00 34.07 2.29
4355 4546 4.731961 GCTGCAAGACATCGAAATTGTATG 59.268 41.667 0.00 0.00 34.07 2.39
4356 4547 5.233957 TGCAAGACATCGAAATTGTATGG 57.766 39.130 0.00 0.00 0.00 2.74
4357 4548 4.096231 TGCAAGACATCGAAATTGTATGGG 59.904 41.667 0.00 0.00 0.00 4.00
4358 4549 4.601019 CAAGACATCGAAATTGTATGGGC 58.399 43.478 0.00 0.00 0.00 5.36
4359 4550 3.884895 AGACATCGAAATTGTATGGGCA 58.115 40.909 0.00 0.00 0.00 5.36
4360 4551 3.627577 AGACATCGAAATTGTATGGGCAC 59.372 43.478 0.00 0.00 0.00 5.01
4374 4565 4.729918 GCACCAGCCCCTGACCAG 62.730 72.222 0.00 0.00 32.44 4.00
4375 4566 2.930019 CACCAGCCCCTGACCAGA 60.930 66.667 0.00 0.00 32.44 3.86
4376 4567 2.930562 ACCAGCCCCTGACCAGAC 60.931 66.667 0.00 0.00 32.44 3.51
4377 4568 3.721706 CCAGCCCCTGACCAGACC 61.722 72.222 0.00 0.00 32.44 3.85
4378 4569 2.930019 CAGCCCCTGACCAGACCA 60.930 66.667 0.00 0.00 32.44 4.02
4379 4570 2.608988 AGCCCCTGACCAGACCAG 60.609 66.667 0.00 0.00 0.00 4.00
4383 4574 3.160585 CCTGACCAGACCAGGCAA 58.839 61.111 0.00 0.00 43.93 4.52
4384 4575 1.455849 CCTGACCAGACCAGGCAAA 59.544 57.895 0.00 0.00 43.93 3.68
4385 4576 0.890996 CCTGACCAGACCAGGCAAAC 60.891 60.000 0.00 0.00 43.93 2.93
4386 4577 0.109342 CTGACCAGACCAGGCAAACT 59.891 55.000 0.00 0.00 0.00 2.66
4387 4578 0.108585 TGACCAGACCAGGCAAACTC 59.891 55.000 0.00 0.00 0.00 3.01
4388 4579 0.108585 GACCAGACCAGGCAAACTCA 59.891 55.000 0.00 0.00 0.00 3.41
4389 4580 0.179018 ACCAGACCAGGCAAACTCAC 60.179 55.000 0.00 0.00 0.00 3.51
4390 4581 0.890996 CCAGACCAGGCAAACTCACC 60.891 60.000 0.00 0.00 0.00 4.02
4391 4582 0.179020 CAGACCAGGCAAACTCACCA 60.179 55.000 0.00 0.00 0.00 4.17
4392 4583 0.773644 AGACCAGGCAAACTCACCAT 59.226 50.000 0.00 0.00 0.00 3.55
4393 4584 1.168714 GACCAGGCAAACTCACCATC 58.831 55.000 0.00 0.00 0.00 3.51
4394 4585 0.478072 ACCAGGCAAACTCACCATCA 59.522 50.000 0.00 0.00 0.00 3.07
4395 4586 1.133513 ACCAGGCAAACTCACCATCAA 60.134 47.619 0.00 0.00 0.00 2.57
4396 4587 2.173519 CCAGGCAAACTCACCATCAAT 58.826 47.619 0.00 0.00 0.00 2.57
4397 4588 2.094390 CCAGGCAAACTCACCATCAATG 60.094 50.000 0.00 0.00 0.00 2.82
4398 4589 2.559668 CAGGCAAACTCACCATCAATGT 59.440 45.455 0.00 0.00 0.00 2.71
4399 4590 2.559668 AGGCAAACTCACCATCAATGTG 59.440 45.455 0.00 0.00 0.00 3.21
4400 4591 2.331194 GCAAACTCACCATCAATGTGC 58.669 47.619 0.00 0.00 0.00 4.57
4401 4592 2.927871 GCAAACTCACCATCAATGTGCC 60.928 50.000 0.00 0.00 0.00 5.01
4402 4593 1.167851 AACTCACCATCAATGTGCCG 58.832 50.000 0.00 0.00 0.00 5.69
4403 4594 0.036732 ACTCACCATCAATGTGCCGT 59.963 50.000 0.00 0.00 0.00 5.68
4404 4595 1.277842 ACTCACCATCAATGTGCCGTA 59.722 47.619 0.00 0.00 0.00 4.02
4405 4596 1.665679 CTCACCATCAATGTGCCGTAC 59.334 52.381 0.00 0.00 0.00 3.67
4406 4597 1.277842 TCACCATCAATGTGCCGTACT 59.722 47.619 0.00 0.00 0.00 2.73
4407 4598 1.665679 CACCATCAATGTGCCGTACTC 59.334 52.381 0.00 0.00 0.00 2.59
4408 4599 0.930310 CCATCAATGTGCCGTACTCG 59.070 55.000 0.00 0.00 0.00 4.18
4409 4600 1.640428 CATCAATGTGCCGTACTCGT 58.360 50.000 0.00 0.00 35.01 4.18
4410 4601 1.588404 CATCAATGTGCCGTACTCGTC 59.412 52.381 0.00 0.00 35.01 4.20
4411 4602 0.455464 TCAATGTGCCGTACTCGTCG 60.455 55.000 0.00 0.00 35.01 5.12
4412 4603 0.455464 CAATGTGCCGTACTCGTCGA 60.455 55.000 0.00 0.00 35.01 4.20
4413 4604 0.455633 AATGTGCCGTACTCGTCGAC 60.456 55.000 5.18 5.18 35.01 4.20
4414 4605 2.572647 GTGCCGTACTCGTCGACG 60.573 66.667 31.30 31.30 41.45 5.12
4418 4609 2.019206 CGTACTCGTCGACGGTCG 59.981 66.667 35.05 26.94 42.10 4.79
4419 4610 2.397252 GTACTCGTCGACGGTCGG 59.603 66.667 35.05 23.68 40.88 4.79
4420 4611 2.815211 TACTCGTCGACGGTCGGG 60.815 66.667 35.05 21.52 40.88 5.14
4423 4614 4.783621 TCGTCGACGGTCGGGGAT 62.784 66.667 35.05 0.00 40.88 3.85
4424 4615 4.247612 CGTCGACGGTCGGGGATC 62.248 72.222 29.70 13.45 40.88 3.36
4425 4616 3.897320 GTCGACGGTCGGGGATCC 61.897 72.222 28.07 1.92 40.88 3.36
4435 4626 2.284493 GGGGATCCGTCTGGGGTA 59.716 66.667 5.45 0.00 36.01 3.69
4436 4627 2.138831 GGGGATCCGTCTGGGGTAC 61.139 68.421 5.45 0.00 36.01 3.34
4437 4628 1.075450 GGGATCCGTCTGGGGTACT 60.075 63.158 5.45 0.00 36.01 2.73
4438 4629 1.114119 GGGATCCGTCTGGGGTACTC 61.114 65.000 5.45 0.00 36.01 2.59
4439 4630 1.453762 GGATCCGTCTGGGGTACTCG 61.454 65.000 0.00 0.00 36.01 4.18
4440 4631 0.750911 GATCCGTCTGGGGTACTCGT 60.751 60.000 0.00 0.00 36.01 4.18
4441 4632 0.324091 ATCCGTCTGGGGTACTCGTT 60.324 55.000 0.00 0.00 36.01 3.85
4442 4633 0.962356 TCCGTCTGGGGTACTCGTTC 60.962 60.000 0.00 0.00 36.01 3.95
4443 4634 0.964358 CCGTCTGGGGTACTCGTTCT 60.964 60.000 0.00 0.00 0.00 3.01
4444 4635 0.450983 CGTCTGGGGTACTCGTTCTC 59.549 60.000 0.00 0.00 0.00 2.87
4445 4636 0.450983 GTCTGGGGTACTCGTTCTCG 59.549 60.000 0.00 0.00 38.55 4.04
4446 4637 0.325933 TCTGGGGTACTCGTTCTCGA 59.674 55.000 0.00 0.00 44.12 4.04
4447 4638 0.450983 CTGGGGTACTCGTTCTCGAC 59.549 60.000 0.00 0.00 41.35 4.20
4467 4658 3.361977 CGGAAGTTTGCCCGGGTG 61.362 66.667 24.63 0.00 41.89 4.61
4468 4659 2.114411 GGAAGTTTGCCCGGGTGA 59.886 61.111 24.63 8.28 0.00 4.02
4469 4660 1.529713 GGAAGTTTGCCCGGGTGAA 60.530 57.895 24.63 14.56 0.00 3.18
4470 4661 1.524008 GGAAGTTTGCCCGGGTGAAG 61.524 60.000 24.63 0.00 0.00 3.02
4471 4662 1.524008 GAAGTTTGCCCGGGTGAAGG 61.524 60.000 24.63 0.00 0.00 3.46
4472 4663 2.002018 AAGTTTGCCCGGGTGAAGGA 62.002 55.000 24.63 0.00 0.00 3.36
4473 4664 1.971695 GTTTGCCCGGGTGAAGGAG 60.972 63.158 24.63 0.00 0.00 3.69
4474 4665 3.860930 TTTGCCCGGGTGAAGGAGC 62.861 63.158 24.63 5.07 0.00 4.70
4477 4668 4.101448 CCCGGGTGAAGGAGCCTG 62.101 72.222 14.18 0.00 40.45 4.85
4478 4669 4.101448 CCGGGTGAAGGAGCCTGG 62.101 72.222 0.00 0.00 44.06 4.45
4479 4670 4.785453 CGGGTGAAGGAGCCTGGC 62.785 72.222 11.65 11.65 40.45 4.85
4480 4671 3.650950 GGGTGAAGGAGCCTGGCA 61.651 66.667 22.65 0.00 39.39 4.92
4481 4672 2.679716 GGTGAAGGAGCCTGGCAT 59.320 61.111 22.65 5.85 0.00 4.40
4482 4673 1.751927 GGTGAAGGAGCCTGGCATG 60.752 63.158 22.65 0.00 0.00 4.06
4483 4674 1.751927 GTGAAGGAGCCTGGCATGG 60.752 63.158 22.65 0.00 0.00 3.66
4484 4675 1.924939 TGAAGGAGCCTGGCATGGA 60.925 57.895 22.65 0.00 0.00 3.41
4485 4676 1.452833 GAAGGAGCCTGGCATGGAC 60.453 63.158 22.65 5.74 0.00 4.02
4486 4677 3.335356 AAGGAGCCTGGCATGGACG 62.335 63.158 22.65 0.00 0.00 4.79
4492 4683 4.457496 CTGGCATGGACGCGGAGT 62.457 66.667 12.47 0.00 0.00 3.85
4493 4684 3.958147 CTGGCATGGACGCGGAGTT 62.958 63.158 12.47 0.00 0.00 3.01
4494 4685 2.746277 GGCATGGACGCGGAGTTT 60.746 61.111 12.47 0.00 0.00 2.66
4495 4686 2.332654 GGCATGGACGCGGAGTTTT 61.333 57.895 12.47 0.00 0.00 2.43
4496 4687 1.579429 GCATGGACGCGGAGTTTTT 59.421 52.632 12.47 0.00 0.00 1.94
4497 4688 0.800012 GCATGGACGCGGAGTTTTTA 59.200 50.000 12.47 0.00 0.00 1.52
4498 4689 1.202031 GCATGGACGCGGAGTTTTTAG 60.202 52.381 12.47 0.00 0.00 1.85
4499 4690 2.343101 CATGGACGCGGAGTTTTTAGA 58.657 47.619 12.47 0.00 0.00 2.10
4500 4691 2.074547 TGGACGCGGAGTTTTTAGAG 57.925 50.000 12.47 0.00 0.00 2.43
4501 4692 0.720027 GGACGCGGAGTTTTTAGAGC 59.280 55.000 12.47 0.00 0.00 4.09
4502 4693 1.425412 GACGCGGAGTTTTTAGAGCA 58.575 50.000 12.47 0.00 0.00 4.26
4503 4694 2.000447 GACGCGGAGTTTTTAGAGCAT 59.000 47.619 12.47 0.00 0.00 3.79
4504 4695 2.000447 ACGCGGAGTTTTTAGAGCATC 59.000 47.619 12.47 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 8.502738 TGAAGATAGTAAGGCCCAAAGAAATAT 58.497 33.333 0.00 0.00 0.00 1.28
67 68 8.241367 GCATTTCGTTTTTCCCTCTAGATTTAA 58.759 33.333 0.00 0.00 0.00 1.52
75 76 4.664150 TTTGCATTTCGTTTTTCCCTCT 57.336 36.364 0.00 0.00 0.00 3.69
81 82 9.213799 ACCATATGTTATTTGCATTTCGTTTTT 57.786 25.926 1.24 0.00 0.00 1.94
93 94 7.596494 CCCTCTATGCAACCATATGTTATTTG 58.404 38.462 1.24 1.25 34.69 2.32
108 109 1.102809 CAATTGCGGCCCTCTATGCA 61.103 55.000 0.00 0.00 35.15 3.96
225 227 9.988350 CGCACATTAAGTCTTTATCTAACAATT 57.012 29.630 0.00 0.00 0.00 2.32
275 279 1.267261 CGTGTCCGTTCTTCAGAGACT 59.733 52.381 0.00 0.00 0.00 3.24
280 284 2.027625 GGGCGTGTCCGTTCTTCAG 61.028 63.158 0.00 0.00 36.15 3.02
288 292 2.519377 TATAATGAAGGGCGTGTCCG 57.481 50.000 0.00 0.00 34.94 4.79
331 335 3.563808 CCGACTGAAATGAAGTGTTTCCA 59.436 43.478 0.00 0.00 35.28 3.53
365 369 1.135731 GAGAGGTGACAGACGCTCG 59.864 63.158 0.00 0.00 30.95 5.03
369 373 0.242286 CACAGGAGAGGTGACAGACG 59.758 60.000 0.00 0.00 38.54 4.18
372 376 1.080230 CGCACAGGAGAGGTGACAG 60.080 63.158 0.00 0.00 38.54 3.51
382 386 2.643272 GACACGAGTCGCACAGGA 59.357 61.111 13.59 0.00 34.60 3.86
394 398 4.368808 CGGGCACGCAAAGACACG 62.369 66.667 0.00 0.00 0.00 4.49
434 438 5.138125 AGGCAATTTTCTAACACACATGG 57.862 39.130 0.00 0.00 0.00 3.66
437 441 4.261405 CGGAAGGCAATTTTCTAACACACA 60.261 41.667 0.00 0.00 0.00 3.72
439 443 3.886505 ACGGAAGGCAATTTTCTAACACA 59.113 39.130 0.00 0.00 0.00 3.72
446 450 5.034797 GTGCTATTACGGAAGGCAATTTTC 58.965 41.667 11.58 0.00 34.65 2.29
496 504 7.660112 TGCAACAAAGATGATGTTACAGATTT 58.340 30.769 0.00 0.00 38.90 2.17
498 506 6.822667 TGCAACAAAGATGATGTTACAGAT 57.177 33.333 0.00 0.00 38.90 2.90
499 507 6.631971 TTGCAACAAAGATGATGTTACAGA 57.368 33.333 0.00 0.00 38.90 3.41
500 508 7.697352 TTTTGCAACAAAGATGATGTTACAG 57.303 32.000 0.00 0.00 38.90 2.74
512 520 4.963352 GCGGAAGAAATTTTTGCAACAAAG 59.037 37.500 0.00 0.00 0.00 2.77
546 565 2.548057 TGCATCTTTTTCGTCTTCGCTT 59.452 40.909 0.00 0.00 36.96 4.68
550 569 5.340667 GTGATGTTGCATCTTTTTCGTCTTC 59.659 40.000 10.02 0.00 0.00 2.87
555 574 4.164822 AGGTGATGTTGCATCTTTTTCG 57.835 40.909 10.02 0.00 0.00 3.46
583 602 6.202188 AGAGCTCATGTTGCAAAAATCTTTTG 59.798 34.615 17.77 7.37 0.00 2.44
584 603 6.202188 CAGAGCTCATGTTGCAAAAATCTTTT 59.798 34.615 17.77 0.00 0.00 2.27
585 604 5.694910 CAGAGCTCATGTTGCAAAAATCTTT 59.305 36.000 17.77 0.00 0.00 2.52
586 605 5.221382 ACAGAGCTCATGTTGCAAAAATCTT 60.221 36.000 17.77 0.00 0.00 2.40
587 606 4.280174 ACAGAGCTCATGTTGCAAAAATCT 59.720 37.500 17.77 0.00 0.00 2.40
588 607 4.553323 ACAGAGCTCATGTTGCAAAAATC 58.447 39.130 17.77 0.00 0.00 2.17
589 608 4.595762 ACAGAGCTCATGTTGCAAAAAT 57.404 36.364 17.77 0.00 0.00 1.82
590 609 4.389890 AACAGAGCTCATGTTGCAAAAA 57.610 36.364 22.57 0.00 39.36 1.94
597 616 3.243636 CCTTTTGCAACAGAGCTCATGTT 60.244 43.478 17.77 18.86 41.47 2.71
598 617 2.295349 CCTTTTGCAACAGAGCTCATGT 59.705 45.455 17.77 14.09 34.99 3.21
599 618 2.352421 CCCTTTTGCAACAGAGCTCATG 60.352 50.000 17.77 13.44 34.99 3.07
600 619 1.891150 CCCTTTTGCAACAGAGCTCAT 59.109 47.619 17.77 0.00 34.99 2.90
601 620 1.321474 CCCTTTTGCAACAGAGCTCA 58.679 50.000 17.77 0.00 34.99 4.26
602 621 1.322442 ACCCTTTTGCAACAGAGCTC 58.678 50.000 14.20 5.27 34.99 4.09
603 622 1.780503 AACCCTTTTGCAACAGAGCT 58.219 45.000 14.20 0.00 34.99 4.09
604 623 3.005791 ACATAACCCTTTTGCAACAGAGC 59.994 43.478 14.20 0.00 0.00 4.09
605 624 4.853924 ACATAACCCTTTTGCAACAGAG 57.146 40.909 14.20 3.18 0.00 3.35
606 625 6.007076 TCATACATAACCCTTTTGCAACAGA 58.993 36.000 14.20 0.00 0.00 3.41
607 626 6.071952 AGTCATACATAACCCTTTTGCAACAG 60.072 38.462 5.59 5.59 0.00 3.16
608 627 5.772672 AGTCATACATAACCCTTTTGCAACA 59.227 36.000 0.00 0.00 0.00 3.33
678 697 1.413767 CCTCAACAGCCGTTCGATCG 61.414 60.000 9.36 9.36 31.13 3.69
683 702 4.090057 GCGCCTCAACAGCCGTTC 62.090 66.667 0.00 0.00 31.13 3.95
700 719 1.296727 GGCGGATCTTAAAGAACGGG 58.703 55.000 0.00 0.00 31.97 5.28
702 721 0.928229 CCGGCGGATCTTAAAGAACG 59.072 55.000 24.41 0.00 33.64 3.95
725 744 2.510064 TAAAGGGGTGTGCTACGCGG 62.510 60.000 12.47 0.00 42.75 6.46
727 746 2.101917 TCTATAAAGGGGTGTGCTACGC 59.898 50.000 1.14 1.14 41.21 4.42
730 749 5.249852 ACTTGTTCTATAAAGGGGTGTGCTA 59.750 40.000 0.00 0.00 0.00 3.49
776 795 8.496534 AAATAGCAAGGCCCAAAGAAATATAT 57.503 30.769 0.00 0.00 0.00 0.86
802 821 4.706476 TGTGGATCTGCTATTTTTCAAGGG 59.294 41.667 0.00 0.00 0.00 3.95
812 834 6.098552 CCTAGATGATGATGTGGATCTGCTAT 59.901 42.308 0.00 0.00 0.00 2.97
825 847 3.577848 GAGTGGTCTGCCTAGATGATGAT 59.422 47.826 0.00 0.00 34.94 2.45
867 889 1.386550 GCTGGGTTGGGTATTGGGT 59.613 57.895 0.00 0.00 0.00 4.51
868 890 0.252012 TTGCTGGGTTGGGTATTGGG 60.252 55.000 0.00 0.00 0.00 4.12
869 891 0.894835 GTTGCTGGGTTGGGTATTGG 59.105 55.000 0.00 0.00 0.00 3.16
870 892 0.894835 GGTTGCTGGGTTGGGTATTG 59.105 55.000 0.00 0.00 0.00 1.90
871 893 0.485099 TGGTTGCTGGGTTGGGTATT 59.515 50.000 0.00 0.00 0.00 1.89
872 894 0.485099 TTGGTTGCTGGGTTGGGTAT 59.515 50.000 0.00 0.00 0.00 2.73
873 895 0.178975 CTTGGTTGCTGGGTTGGGTA 60.179 55.000 0.00 0.00 0.00 3.69
919 941 4.856607 CCTTCGGAGTCGCGGCTC 62.857 72.222 31.90 31.90 36.13 4.70
1114 1167 3.576356 GACATGTCCATGGCCGCG 61.576 66.667 15.31 0.00 40.97 6.46
1264 1317 0.247736 CGAGGGAGGAGAAGTGGTTG 59.752 60.000 0.00 0.00 0.00 3.77
1274 1331 0.476338 CCAGAGAGATCGAGGGAGGA 59.524 60.000 0.00 0.00 0.00 3.71
1437 1494 2.029838 AACGGATCAGTCATGCCTTC 57.970 50.000 0.00 0.00 0.00 3.46
1466 1523 1.227823 TGAAACCTGGACAGCCACG 60.228 57.895 0.00 0.00 39.92 4.94
1470 1527 0.108585 TCACCTGAAACCTGGACAGC 59.891 55.000 0.00 0.00 0.00 4.40
1471 1528 2.867109 ATCACCTGAAACCTGGACAG 57.133 50.000 0.00 6.99 0.00 3.51
1613 1671 0.246757 CGTCACTTGCGCGTATCAAC 60.247 55.000 8.43 0.00 0.00 3.18
1633 1691 0.737367 TCGCTCAACTCATCAAGGCG 60.737 55.000 0.00 0.00 42.00 5.52
1792 1854 4.393990 TGCAGATTCAGACATTTACAGCAG 59.606 41.667 0.00 0.00 0.00 4.24
1819 1882 0.112995 AGGTCTTTGCATTCCAGGCA 59.887 50.000 0.00 0.00 40.00 4.75
1872 1936 9.562408 TTCTTTGTACCTGAAACATACAATGTA 57.438 29.630 0.00 0.00 44.07 2.29
2036 2112 0.815095 TGCCTTCAATGAGCATGCAG 59.185 50.000 21.98 6.20 0.00 4.41
2046 2122 6.913873 GCAAATCATTTATGTGCCTTCAAT 57.086 33.333 0.00 0.00 42.28 2.57
2158 2234 5.789710 AGTCCATTACCGTTGTAAATTCG 57.210 39.130 0.00 0.00 40.21 3.34
2203 2279 3.309296 GAGATGAGGGAATGGACCACTA 58.691 50.000 0.00 0.00 0.00 2.74
2313 2390 4.383118 CCCATAGATGTCGAAACCTGAAGT 60.383 45.833 0.00 0.00 0.00 3.01
2316 2393 3.371034 TCCCATAGATGTCGAAACCTGA 58.629 45.455 0.00 0.00 0.00 3.86
2561 2638 2.057316 GAATGATCGCTGTCATCCTCG 58.943 52.381 1.78 0.00 37.85 4.63
2638 2715 5.340439 AATACTTGAAAGGTAGAGGGACG 57.660 43.478 0.00 0.00 0.00 4.79
2645 2722 8.821894 GCAATCAGAGTAATACTTGAAAGGTAG 58.178 37.037 0.00 0.00 0.00 3.18
2707 2784 6.263168 AGTTCAAATTTGGAACAGAGTACCAG 59.737 38.462 23.38 0.00 45.45 4.00
2716 2793 8.260818 TCATGGTTTTAGTTCAAATTTGGAACA 58.739 29.630 23.38 13.51 45.45 3.18
2740 2861 1.006758 ACTCCCTCCGTTCCATAGTCA 59.993 52.381 0.00 0.00 0.00 3.41
2741 2862 1.777941 ACTCCCTCCGTTCCATAGTC 58.222 55.000 0.00 0.00 0.00 2.59
2742 2863 2.244252 AGTACTCCCTCCGTTCCATAGT 59.756 50.000 0.00 0.00 0.00 2.12
2743 2864 2.946785 AGTACTCCCTCCGTTCCATAG 58.053 52.381 0.00 0.00 0.00 2.23
2744 2865 3.028850 CAAGTACTCCCTCCGTTCCATA 58.971 50.000 0.00 0.00 0.00 2.74
2745 2866 1.831736 CAAGTACTCCCTCCGTTCCAT 59.168 52.381 0.00 0.00 0.00 3.41
2746 2867 1.203087 TCAAGTACTCCCTCCGTTCCA 60.203 52.381 0.00 0.00 0.00 3.53
2747 2868 1.553706 TCAAGTACTCCCTCCGTTCC 58.446 55.000 0.00 0.00 0.00 3.62
2748 2869 3.889520 AATCAAGTACTCCCTCCGTTC 57.110 47.619 0.00 0.00 0.00 3.95
2749 2870 4.081254 GGTTAATCAAGTACTCCCTCCGTT 60.081 45.833 0.00 0.00 0.00 4.44
2750 2871 3.450096 GGTTAATCAAGTACTCCCTCCGT 59.550 47.826 0.00 0.00 0.00 4.69
2751 2872 3.181468 GGGTTAATCAAGTACTCCCTCCG 60.181 52.174 0.00 0.00 0.00 4.63
2752 2873 3.778629 TGGGTTAATCAAGTACTCCCTCC 59.221 47.826 13.20 3.44 35.00 4.30
2753 2874 5.429130 CTTGGGTTAATCAAGTACTCCCTC 58.571 45.833 13.20 0.00 37.43 4.30
2754 2875 4.227527 CCTTGGGTTAATCAAGTACTCCCT 59.772 45.833 13.20 0.00 39.78 4.20
2755 2876 4.524053 CCTTGGGTTAATCAAGTACTCCC 58.476 47.826 15.61 6.61 39.78 4.30
2756 2877 3.945921 GCCTTGGGTTAATCAAGTACTCC 59.054 47.826 15.61 0.00 39.78 3.85
2757 2878 4.395231 GTGCCTTGGGTTAATCAAGTACTC 59.605 45.833 15.61 8.29 39.78 2.59
2758 2879 4.042934 AGTGCCTTGGGTTAATCAAGTACT 59.957 41.667 15.61 15.28 39.78 2.73
2759 2880 4.332828 AGTGCCTTGGGTTAATCAAGTAC 58.667 43.478 15.61 14.00 39.78 2.73
2760 2881 4.650972 AGTGCCTTGGGTTAATCAAGTA 57.349 40.909 15.61 6.34 39.78 2.24
2761 2882 3.525800 AGTGCCTTGGGTTAATCAAGT 57.474 42.857 15.61 1.13 39.78 3.16
2762 2883 5.652014 TCATTAGTGCCTTGGGTTAATCAAG 59.348 40.000 12.04 12.04 40.75 3.02
2763 2884 5.575157 TCATTAGTGCCTTGGGTTAATCAA 58.425 37.500 0.00 0.00 0.00 2.57
2764 2885 5.186256 TCATTAGTGCCTTGGGTTAATCA 57.814 39.130 0.00 0.00 0.00 2.57
2765 2886 5.652452 ACTTCATTAGTGCCTTGGGTTAATC 59.348 40.000 0.00 0.00 35.19 1.75
2766 2887 5.580022 ACTTCATTAGTGCCTTGGGTTAAT 58.420 37.500 0.00 0.00 35.19 1.40
2767 2888 4.993028 ACTTCATTAGTGCCTTGGGTTAA 58.007 39.130 0.00 0.00 35.19 2.01
2768 2889 4.650972 ACTTCATTAGTGCCTTGGGTTA 57.349 40.909 0.00 0.00 35.19 2.85
2769 2890 3.525800 ACTTCATTAGTGCCTTGGGTT 57.474 42.857 0.00 0.00 35.19 4.11
2926 3082 2.098607 CAGCAGCCACAACAAGGATATG 59.901 50.000 0.00 0.00 0.00 1.78
3027 3185 3.686726 GCTTGTTGGTGGAGATAACTGAG 59.313 47.826 0.00 0.00 0.00 3.35
3072 3230 5.980324 CAATCAATTGCGAAGTACAAGTG 57.020 39.130 0.00 0.00 42.73 3.16
3091 3249 5.455326 GGACTAGACAGGGATGTAATGCAAT 60.455 44.000 0.00 0.00 35.75 3.56
3094 3252 3.388024 TGGACTAGACAGGGATGTAATGC 59.612 47.826 0.00 0.00 0.00 3.56
3117 3275 0.478072 ATGGGCAGTGTGTGGAGAAA 59.522 50.000 0.00 0.00 0.00 2.52
3150 3308 4.532834 AGGATCTAAGACAGACCAGAGAC 58.467 47.826 0.00 0.00 35.62 3.36
3159 3325 3.004944 GGGCTTCGTAGGATCTAAGACAG 59.995 52.174 0.00 0.00 0.00 3.51
3169 3335 1.614241 GCTTCCTGGGCTTCGTAGGA 61.614 60.000 0.00 0.00 38.78 2.94
3248 3423 6.350612 CCTGAAAGTAGAGGTCTCAGGTTAAG 60.351 46.154 8.03 0.00 45.42 1.85
3265 3440 5.441718 TCAGCTATTCCATTCCTGAAAGT 57.558 39.130 0.00 0.00 30.30 2.66
3266 3441 6.764308 TTTCAGCTATTCCATTCCTGAAAG 57.236 37.500 9.32 0.00 43.55 2.62
3267 3442 5.126061 GCTTTCAGCTATTCCATTCCTGAAA 59.874 40.000 11.98 11.98 45.15 2.69
3268 3443 4.641989 GCTTTCAGCTATTCCATTCCTGAA 59.358 41.667 0.00 0.00 39.84 3.02
3293 3468 0.237761 AACACTTCCGACGAGTCTCG 59.762 55.000 20.57 20.57 46.93 4.04
3298 3473 0.852777 CACACAACACTTCCGACGAG 59.147 55.000 0.00 0.00 0.00 4.18
3299 3474 1.149361 GCACACAACACTTCCGACGA 61.149 55.000 0.00 0.00 0.00 4.20
3300 3475 1.275657 GCACACAACACTTCCGACG 59.724 57.895 0.00 0.00 0.00 5.12
3301 3476 0.730265 TTGCACACAACACTTCCGAC 59.270 50.000 0.00 0.00 0.00 4.79
3302 3477 1.601903 GATTGCACACAACACTTCCGA 59.398 47.619 0.00 0.00 38.99 4.55
3303 3478 1.333308 TGATTGCACACAACACTTCCG 59.667 47.619 0.00 0.00 38.99 4.30
3304 3479 3.648339 ATGATTGCACACAACACTTCC 57.352 42.857 0.00 0.00 38.99 3.46
3305 3480 5.362556 AGTATGATTGCACACAACACTTC 57.637 39.130 0.00 0.00 38.99 3.01
3306 3481 5.997746 ACTAGTATGATTGCACACAACACTT 59.002 36.000 0.00 0.00 38.99 3.16
3307 3482 5.551233 ACTAGTATGATTGCACACAACACT 58.449 37.500 0.00 0.92 38.99 3.55
3308 3483 5.862924 ACTAGTATGATTGCACACAACAC 57.137 39.130 0.00 0.00 38.99 3.32
3309 3484 6.930731 TCTACTAGTATGATTGCACACAACA 58.069 36.000 2.33 0.00 38.99 3.33
3310 3485 7.201530 GGTTCTACTAGTATGATTGCACACAAC 60.202 40.741 2.33 0.00 38.99 3.32
3311 3486 6.816640 GGTTCTACTAGTATGATTGCACACAA 59.183 38.462 2.33 0.00 40.87 3.33
3312 3487 6.154534 AGGTTCTACTAGTATGATTGCACACA 59.845 38.462 2.33 0.00 0.00 3.72
3313 3488 6.574350 AGGTTCTACTAGTATGATTGCACAC 58.426 40.000 2.33 0.00 0.00 3.82
3314 3489 6.791867 AGGTTCTACTAGTATGATTGCACA 57.208 37.500 2.33 0.00 0.00 4.57
3315 3490 7.942990 AGTAGGTTCTACTAGTATGATTGCAC 58.057 38.462 2.33 0.00 0.00 4.57
3316 3491 8.414003 CAAGTAGGTTCTACTAGTATGATTGCA 58.586 37.037 2.33 0.00 0.00 4.08
3317 3492 8.630917 TCAAGTAGGTTCTACTAGTATGATTGC 58.369 37.037 2.33 0.00 0.00 3.56
3401 3582 2.095567 CACTTTGTACCATGTCAGCAGC 60.096 50.000 0.00 0.00 0.00 5.25
3402 3583 3.141398 ACACTTTGTACCATGTCAGCAG 58.859 45.455 0.00 0.00 0.00 4.24
3403 3584 3.207265 ACACTTTGTACCATGTCAGCA 57.793 42.857 0.00 0.00 0.00 4.41
3465 3647 4.375205 CGTGCACACAATTAAACAAGCATG 60.375 41.667 18.64 0.00 32.98 4.06
3467 3649 3.111838 CGTGCACACAATTAAACAAGCA 58.888 40.909 18.64 0.00 0.00 3.91
3468 3650 2.470999 CCGTGCACACAATTAAACAAGC 59.529 45.455 18.64 0.00 0.00 4.01
3469 3651 3.049206 CCCGTGCACACAATTAAACAAG 58.951 45.455 18.64 0.00 0.00 3.16
3635 3821 3.481453 GGCAGAAATATCCTCCCAGTTC 58.519 50.000 0.00 0.00 0.00 3.01
3765 3954 0.469144 ACCCGAAAATGCAACCTGGT 60.469 50.000 0.00 0.00 0.00 4.00
3767 3956 0.109781 CGACCCGAAAATGCAACCTG 60.110 55.000 0.00 0.00 0.00 4.00
3849 4040 0.236449 GGTAACGGCGTGAAAAGTGG 59.764 55.000 15.70 0.00 0.00 4.00
3865 4056 3.687102 CGTGAGTGGCCACCGGTA 61.687 66.667 32.29 13.32 33.67 4.02
3986 4177 1.204467 GCCTGCATTTTTCAATCCGGA 59.796 47.619 6.61 6.61 0.00 5.14
4018 4209 6.089417 GCACGCATTTTAAAAGAGTGCTAAAT 59.911 34.615 30.08 12.57 46.69 1.40
4048 4239 5.386323 CGATTTGTTTTCTAAGTTTGCGCAG 60.386 40.000 11.31 0.00 0.00 5.18
4086 4277 1.807742 CATTTACCCGGCGACTTTTGA 59.192 47.619 9.30 0.00 0.00 2.69
4098 4289 3.202829 TGCTCCGATTACCATTTACCC 57.797 47.619 0.00 0.00 0.00 3.69
4103 4294 2.620115 CTGCAATGCTCCGATTACCATT 59.380 45.455 6.82 0.00 0.00 3.16
4104 4295 2.224606 CTGCAATGCTCCGATTACCAT 58.775 47.619 6.82 0.00 0.00 3.55
4105 4296 1.667236 CTGCAATGCTCCGATTACCA 58.333 50.000 6.82 0.00 0.00 3.25
4106 4297 0.947244 CCTGCAATGCTCCGATTACC 59.053 55.000 6.82 0.00 0.00 2.85
4107 4298 0.308993 GCCTGCAATGCTCCGATTAC 59.691 55.000 6.82 0.00 0.00 1.89
4108 4299 0.819259 GGCCTGCAATGCTCCGATTA 60.819 55.000 6.82 0.00 0.00 1.75
4109 4300 2.123428 GGCCTGCAATGCTCCGATT 61.123 57.895 6.82 0.00 0.00 3.34
4110 4301 2.517875 GGCCTGCAATGCTCCGAT 60.518 61.111 6.82 0.00 0.00 4.18
4113 4304 3.512516 GTCGGCCTGCAATGCTCC 61.513 66.667 6.82 4.29 0.00 4.70
4114 4305 3.512516 GGTCGGCCTGCAATGCTC 61.513 66.667 6.82 0.00 0.00 4.26
4115 4306 3.650298 ATGGTCGGCCTGCAATGCT 62.650 57.895 7.97 0.00 35.27 3.79
4116 4307 3.142838 ATGGTCGGCCTGCAATGC 61.143 61.111 7.97 0.00 35.27 3.56
4117 4308 1.721664 CTCATGGTCGGCCTGCAATG 61.722 60.000 7.97 2.07 35.27 2.82
4118 4309 1.452651 CTCATGGTCGGCCTGCAAT 60.453 57.895 7.97 0.00 35.27 3.56
4119 4310 1.913951 ATCTCATGGTCGGCCTGCAA 61.914 55.000 7.97 0.00 35.27 4.08
4120 4311 2.369633 ATCTCATGGTCGGCCTGCA 61.370 57.895 7.97 0.00 35.27 4.41
4121 4312 1.890979 CATCTCATGGTCGGCCTGC 60.891 63.158 7.97 0.00 35.27 4.85
4122 4313 1.890979 GCATCTCATGGTCGGCCTG 60.891 63.158 7.97 3.05 35.27 4.85
4123 4314 2.507944 GCATCTCATGGTCGGCCT 59.492 61.111 7.97 0.00 35.27 5.19
4124 4315 2.592861 GGCATCTCATGGTCGGCC 60.593 66.667 0.00 0.00 0.00 6.13
4125 4316 2.592861 GGGCATCTCATGGTCGGC 60.593 66.667 0.00 0.00 0.00 5.54
4126 4317 2.280389 CGGGCATCTCATGGTCGG 60.280 66.667 0.00 0.00 0.00 4.79
4127 4318 2.969238 GCGGGCATCTCATGGTCG 60.969 66.667 0.00 0.00 0.00 4.79
4128 4319 1.228063 ATGCGGGCATCTCATGGTC 60.228 57.895 0.00 0.00 29.42 4.02
4129 4320 1.527611 CATGCGGGCATCTCATGGT 60.528 57.895 2.58 0.00 35.27 3.55
4130 4321 1.228033 TCATGCGGGCATCTCATGG 60.228 57.895 2.58 0.00 38.41 3.66
4131 4322 0.250166 TCTCATGCGGGCATCTCATG 60.250 55.000 2.58 3.73 39.02 3.07
4132 4323 0.691332 ATCTCATGCGGGCATCTCAT 59.309 50.000 2.58 0.00 33.90 2.90
4133 4324 0.250166 CATCTCATGCGGGCATCTCA 60.250 55.000 2.58 0.00 33.90 3.27
4134 4325 0.250209 ACATCTCATGCGGGCATCTC 60.250 55.000 2.58 0.00 33.90 2.75
4135 4326 0.534427 CACATCTCATGCGGGCATCT 60.534 55.000 2.58 0.00 33.90 2.90
4136 4327 1.947013 CACATCTCATGCGGGCATC 59.053 57.895 2.58 0.00 33.90 3.91
4137 4328 2.191513 GCACATCTCATGCGGGCAT 61.192 57.895 0.00 0.00 37.08 4.40
4138 4329 2.825387 GCACATCTCATGCGGGCA 60.825 61.111 0.00 0.00 32.45 5.36
4143 4334 2.364970 AGTCCTCTAGCACATCTCATGC 59.635 50.000 0.00 0.00 43.74 4.06
4144 4335 3.384146 ACAGTCCTCTAGCACATCTCATG 59.616 47.826 0.00 0.00 0.00 3.07
4145 4336 3.636300 GACAGTCCTCTAGCACATCTCAT 59.364 47.826 0.00 0.00 0.00 2.90
4146 4337 3.020274 GACAGTCCTCTAGCACATCTCA 58.980 50.000 0.00 0.00 0.00 3.27
4147 4338 2.032799 CGACAGTCCTCTAGCACATCTC 59.967 54.545 0.00 0.00 0.00 2.75
4148 4339 2.020720 CGACAGTCCTCTAGCACATCT 58.979 52.381 0.00 0.00 0.00 2.90
4149 4340 1.535015 GCGACAGTCCTCTAGCACATC 60.535 57.143 0.00 0.00 0.00 3.06
4150 4341 0.457851 GCGACAGTCCTCTAGCACAT 59.542 55.000 0.00 0.00 0.00 3.21
4151 4342 1.595993 GGCGACAGTCCTCTAGCACA 61.596 60.000 0.00 0.00 0.00 4.57
4152 4343 1.139947 GGCGACAGTCCTCTAGCAC 59.860 63.158 0.00 0.00 0.00 4.40
4153 4344 2.407428 CGGCGACAGTCCTCTAGCA 61.407 63.158 0.00 0.00 0.00 3.49
4154 4345 2.325666 GACGGCGACAGTCCTCTAGC 62.326 65.000 16.62 0.00 32.78 3.42
4155 4346 0.745128 AGACGGCGACAGTCCTCTAG 60.745 60.000 16.62 0.00 39.31 2.43
4156 4347 1.025113 CAGACGGCGACAGTCCTCTA 61.025 60.000 16.62 0.00 39.31 2.43
4157 4348 2.034376 AGACGGCGACAGTCCTCT 59.966 61.111 16.62 0.00 39.31 3.69
4158 4349 2.143594 AACAGACGGCGACAGTCCTC 62.144 60.000 16.62 0.00 39.31 3.71
4159 4350 2.201022 AACAGACGGCGACAGTCCT 61.201 57.895 16.62 0.00 39.31 3.85
4160 4351 2.022129 CAACAGACGGCGACAGTCC 61.022 63.158 16.62 0.00 39.31 3.85
4161 4352 2.658707 GCAACAGACGGCGACAGTC 61.659 63.158 16.62 0.00 38.81 3.51
4162 4353 2.661866 GCAACAGACGGCGACAGT 60.662 61.111 16.62 7.97 0.00 3.55
4163 4354 2.162921 CTTGCAACAGACGGCGACAG 62.163 60.000 16.62 7.15 0.00 3.51
4164 4355 2.202946 TTGCAACAGACGGCGACA 60.203 55.556 16.62 0.00 0.00 4.35
4165 4356 2.551270 CTTGCAACAGACGGCGAC 59.449 61.111 16.62 7.87 0.00 5.19
4166 4357 3.345808 GCTTGCAACAGACGGCGA 61.346 61.111 16.62 0.00 0.00 5.54
4167 4358 3.584250 CTGCTTGCAACAGACGGCG 62.584 63.158 18.50 4.80 37.32 6.46
4168 4359 2.253452 CTGCTTGCAACAGACGGC 59.747 61.111 18.50 10.34 37.32 5.68
4169 4360 1.597854 TCCTGCTTGCAACAGACGG 60.598 57.895 22.59 12.26 37.32 4.79
4170 4361 1.571460 GTCCTGCTTGCAACAGACG 59.429 57.895 22.59 11.98 37.32 4.18
4171 4362 0.819259 TGGTCCTGCTTGCAACAGAC 60.819 55.000 22.59 18.32 37.32 3.51
4172 4363 0.819259 GTGGTCCTGCTTGCAACAGA 60.819 55.000 22.59 11.26 37.32 3.41
4173 4364 1.656441 GTGGTCCTGCTTGCAACAG 59.344 57.895 17.13 17.13 34.82 3.16
4174 4365 1.827789 GGTGGTCCTGCTTGCAACA 60.828 57.895 0.00 0.00 0.00 3.33
4175 4366 1.518903 GAGGTGGTCCTGCTTGCAAC 61.519 60.000 0.00 0.00 45.24 4.17
4176 4367 1.228245 GAGGTGGTCCTGCTTGCAA 60.228 57.895 0.00 0.00 45.24 4.08
4177 4368 1.782201 ATGAGGTGGTCCTGCTTGCA 61.782 55.000 0.00 0.00 45.24 4.08
4178 4369 1.001641 ATGAGGTGGTCCTGCTTGC 60.002 57.895 0.00 0.00 45.24 4.01
4179 4370 0.617413 AGATGAGGTGGTCCTGCTTG 59.383 55.000 0.00 0.00 45.24 4.01
4180 4371 0.617413 CAGATGAGGTGGTCCTGCTT 59.383 55.000 0.00 0.00 45.24 3.91
4181 4372 1.908340 GCAGATGAGGTGGTCCTGCT 61.908 60.000 0.00 0.00 45.24 4.24
4182 4373 1.451028 GCAGATGAGGTGGTCCTGC 60.451 63.158 0.00 0.00 45.24 4.85
4183 4374 0.325933 TTGCAGATGAGGTGGTCCTG 59.674 55.000 0.00 0.00 45.24 3.86
4185 4376 0.615331 TCTTGCAGATGAGGTGGTCC 59.385 55.000 0.00 0.00 0.00 4.46
4186 4377 1.731720 GTCTTGCAGATGAGGTGGTC 58.268 55.000 0.00 0.00 0.00 4.02
4187 4378 0.036952 CGTCTTGCAGATGAGGTGGT 60.037 55.000 0.00 0.00 33.07 4.16
4188 4379 0.742281 CCGTCTTGCAGATGAGGTGG 60.742 60.000 6.87 0.00 33.07 4.61
4189 4380 0.247460 TCCGTCTTGCAGATGAGGTG 59.753 55.000 6.87 0.38 33.07 4.00
4190 4381 0.247736 GTCCGTCTTGCAGATGAGGT 59.752 55.000 6.87 0.00 33.07 3.85
4191 4382 0.803768 CGTCCGTCTTGCAGATGAGG 60.804 60.000 6.87 3.89 33.07 3.86
4192 4383 0.803768 CCGTCCGTCTTGCAGATGAG 60.804 60.000 6.87 0.00 33.07 2.90
4193 4384 1.215382 CCGTCCGTCTTGCAGATGA 59.785 57.895 6.87 0.00 33.07 2.92
4194 4385 1.811266 CCCGTCCGTCTTGCAGATG 60.811 63.158 0.00 0.00 0.00 2.90
4195 4386 2.579201 CCCGTCCGTCTTGCAGAT 59.421 61.111 0.00 0.00 0.00 2.90
4196 4387 3.691342 CCCCGTCCGTCTTGCAGA 61.691 66.667 0.00 0.00 0.00 4.26
4197 4388 4.760047 CCCCCGTCCGTCTTGCAG 62.760 72.222 0.00 0.00 0.00 4.41
4199 4390 4.452733 CTCCCCCGTCCGTCTTGC 62.453 72.222 0.00 0.00 0.00 4.01
4200 4391 2.678934 TCTCCCCCGTCCGTCTTG 60.679 66.667 0.00 0.00 0.00 3.02
4201 4392 2.679287 GTCTCCCCCGTCCGTCTT 60.679 66.667 0.00 0.00 0.00 3.01
4206 4397 4.755507 AGGTCGTCTCCCCCGTCC 62.756 72.222 0.00 0.00 34.39 4.79
4207 4398 3.450115 CAGGTCGTCTCCCCCGTC 61.450 72.222 0.00 0.00 0.00 4.79
4210 4401 3.462678 GAGCAGGTCGTCTCCCCC 61.463 72.222 0.00 0.00 0.00 5.40
4211 4402 2.283529 TTGAGCAGGTCGTCTCCCC 61.284 63.158 0.00 0.00 0.00 4.81
4212 4403 1.079750 GTTGAGCAGGTCGTCTCCC 60.080 63.158 0.00 0.00 0.00 4.30
4213 4404 0.389166 CTGTTGAGCAGGTCGTCTCC 60.389 60.000 0.00 0.00 41.42 3.71
4214 4405 1.011451 GCTGTTGAGCAGGTCGTCTC 61.011 60.000 0.00 0.00 45.46 3.36
4215 4406 1.005630 GCTGTTGAGCAGGTCGTCT 60.006 57.895 0.00 0.00 45.46 4.18
4216 4407 3.555428 GCTGTTGAGCAGGTCGTC 58.445 61.111 0.00 0.00 45.46 4.20
4224 4415 4.395583 GCGGTGCTGCTGTTGAGC 62.396 66.667 0.00 0.00 46.44 4.26
4225 4416 3.730761 GGCGGTGCTGCTGTTGAG 61.731 66.667 0.00 0.00 34.52 3.02
4260 4451 1.744368 CTACAGGCTGCAGTGCTGG 60.744 63.158 21.74 13.08 0.00 4.85
4261 4452 1.744368 CCTACAGGCTGCAGTGCTG 60.744 63.158 17.60 17.27 0.00 4.41
4262 4453 2.177594 GACCTACAGGCTGCAGTGCT 62.178 60.000 17.60 0.00 39.32 4.40
4263 4454 1.743252 GACCTACAGGCTGCAGTGC 60.743 63.158 15.89 8.58 39.32 4.40
4264 4455 1.446792 CGACCTACAGGCTGCAGTG 60.447 63.158 15.89 9.27 39.32 3.66
4265 4456 1.908793 ACGACCTACAGGCTGCAGT 60.909 57.895 15.89 9.50 39.32 4.40
4266 4457 1.446792 CACGACCTACAGGCTGCAG 60.447 63.158 15.89 10.11 39.32 4.41
4267 4458 2.656646 CACGACCTACAGGCTGCA 59.343 61.111 15.89 0.00 39.32 4.41
4268 4459 2.815647 GCACGACCTACAGGCTGC 60.816 66.667 15.89 0.00 39.32 5.25
4269 4460 2.125512 GGCACGACCTACAGGCTG 60.126 66.667 14.16 14.16 39.32 4.85
4270 4461 3.391382 GGGCACGACCTACAGGCT 61.391 66.667 0.00 0.00 39.32 4.58
4271 4462 4.468689 GGGGCACGACCTACAGGC 62.469 72.222 0.00 0.00 39.32 4.85
4272 4463 3.782443 GGGGGCACGACCTACAGG 61.782 72.222 0.00 0.00 39.10 4.00
4273 4464 4.143333 CGGGGGCACGACCTACAG 62.143 72.222 0.00 0.00 39.10 2.74
4275 4466 4.446413 CACGGGGGCACGACCTAC 62.446 72.222 7.82 0.00 39.10 3.18
4285 4476 2.828549 GCATAAGCACCACGGGGG 60.829 66.667 9.50 0.00 41.58 5.40
4286 4477 2.114670 CAGCATAAGCACCACGGGG 61.115 63.158 0.00 0.00 45.49 5.73
4287 4478 2.764314 GCAGCATAAGCACCACGGG 61.764 63.158 0.00 0.00 45.49 5.28
4288 4479 1.985447 CTGCAGCATAAGCACCACGG 61.985 60.000 0.00 0.00 45.49 4.94
4289 4480 1.426621 CTGCAGCATAAGCACCACG 59.573 57.895 0.00 0.00 45.49 4.94
4290 4481 1.805254 CCTGCAGCATAAGCACCAC 59.195 57.895 8.66 0.00 45.49 4.16
4291 4482 2.048023 GCCTGCAGCATAAGCACCA 61.048 57.895 8.66 0.00 45.49 4.17
4292 4483 2.779033 GGCCTGCAGCATAAGCACC 61.779 63.158 8.66 0.00 46.50 5.01
4293 4484 2.779033 GGGCCTGCAGCATAAGCAC 61.779 63.158 8.66 2.81 46.50 4.40
4294 4485 2.440796 GGGCCTGCAGCATAAGCA 60.441 61.111 8.66 0.00 46.50 3.91
4295 4486 3.589881 CGGGCCTGCAGCATAAGC 61.590 66.667 8.66 5.70 46.50 3.09
4296 4487 3.589881 GCGGGCCTGCAGCATAAG 61.590 66.667 32.13 0.00 46.50 1.73
4326 4517 3.392595 GATGTCTTGCAGCAGCGCC 62.393 63.158 2.29 0.00 46.23 6.53
4327 4518 2.099831 GATGTCTTGCAGCAGCGC 59.900 61.111 0.00 0.00 46.23 5.92
4328 4519 1.629345 TTCGATGTCTTGCAGCAGCG 61.629 55.000 15.87 15.87 46.23 5.18
4329 4520 0.518636 TTTCGATGTCTTGCAGCAGC 59.481 50.000 0.00 0.00 42.57 5.25
4330 4521 3.168963 CAATTTCGATGTCTTGCAGCAG 58.831 45.455 0.00 0.00 32.00 4.24
4331 4522 2.553602 ACAATTTCGATGTCTTGCAGCA 59.446 40.909 0.00 0.00 32.00 4.41
4332 4523 3.207474 ACAATTTCGATGTCTTGCAGC 57.793 42.857 0.00 0.00 0.00 5.25
4333 4524 5.268544 CCATACAATTTCGATGTCTTGCAG 58.731 41.667 0.00 0.00 32.27 4.41
4334 4525 4.096231 CCCATACAATTTCGATGTCTTGCA 59.904 41.667 0.00 0.00 32.27 4.08
4335 4526 4.601019 CCCATACAATTTCGATGTCTTGC 58.399 43.478 0.00 0.00 32.27 4.01
4336 4527 4.096231 TGCCCATACAATTTCGATGTCTTG 59.904 41.667 0.00 0.00 32.27 3.02
4337 4528 4.096382 GTGCCCATACAATTTCGATGTCTT 59.904 41.667 0.00 0.00 32.27 3.01
4338 4529 3.627577 GTGCCCATACAATTTCGATGTCT 59.372 43.478 0.00 0.00 32.27 3.41
4339 4530 3.243068 GGTGCCCATACAATTTCGATGTC 60.243 47.826 0.00 0.00 32.27 3.06
4340 4531 2.687935 GGTGCCCATACAATTTCGATGT 59.312 45.455 0.00 0.00 34.81 3.06
4341 4532 2.687425 TGGTGCCCATACAATTTCGATG 59.313 45.455 0.00 0.00 0.00 3.84
4342 4533 2.951642 CTGGTGCCCATACAATTTCGAT 59.048 45.455 0.00 0.00 30.82 3.59
4343 4534 2.364632 CTGGTGCCCATACAATTTCGA 58.635 47.619 0.00 0.00 30.82 3.71
4344 4535 1.202290 GCTGGTGCCCATACAATTTCG 60.202 52.381 0.00 0.00 30.82 3.46
4345 4536 2.584492 GCTGGTGCCCATACAATTTC 57.416 50.000 0.00 0.00 30.82 2.17
4357 4548 4.729918 CTGGTCAGGGGCTGGTGC 62.730 72.222 0.00 0.00 38.76 5.01
4358 4549 2.930019 TCTGGTCAGGGGCTGGTG 60.930 66.667 0.00 0.00 31.51 4.17
4359 4550 2.930562 GTCTGGTCAGGGGCTGGT 60.931 66.667 0.00 0.00 31.51 4.00
4360 4551 3.721706 GGTCTGGTCAGGGGCTGG 61.722 72.222 0.00 0.00 31.51 4.85
4361 4552 2.930019 TGGTCTGGTCAGGGGCTG 60.930 66.667 0.00 0.00 0.00 4.85
4362 4553 2.608988 CTGGTCTGGTCAGGGGCT 60.609 66.667 0.00 0.00 0.00 5.19
4363 4554 3.721706 CCTGGTCTGGTCAGGGGC 61.722 72.222 2.40 0.00 45.95 5.80
4367 4558 0.109342 AGTTTGCCTGGTCTGGTCAG 59.891 55.000 0.00 0.00 0.00 3.51
4368 4559 0.108585 GAGTTTGCCTGGTCTGGTCA 59.891 55.000 0.00 0.00 0.00 4.02
4369 4560 0.108585 TGAGTTTGCCTGGTCTGGTC 59.891 55.000 0.00 0.00 0.00 4.02
4370 4561 0.179018 GTGAGTTTGCCTGGTCTGGT 60.179 55.000 0.00 0.00 0.00 4.00
4371 4562 0.890996 GGTGAGTTTGCCTGGTCTGG 60.891 60.000 0.00 0.00 0.00 3.86
4372 4563 0.179020 TGGTGAGTTTGCCTGGTCTG 60.179 55.000 0.00 0.00 0.00 3.51
4373 4564 0.773644 ATGGTGAGTTTGCCTGGTCT 59.226 50.000 0.00 0.00 0.00 3.85
4374 4565 1.168714 GATGGTGAGTTTGCCTGGTC 58.831 55.000 0.00 0.00 0.00 4.02
4375 4566 0.478072 TGATGGTGAGTTTGCCTGGT 59.522 50.000 0.00 0.00 0.00 4.00
4376 4567 1.619654 TTGATGGTGAGTTTGCCTGG 58.380 50.000 0.00 0.00 0.00 4.45
4377 4568 2.559668 ACATTGATGGTGAGTTTGCCTG 59.440 45.455 0.00 0.00 0.00 4.85
4378 4569 2.559668 CACATTGATGGTGAGTTTGCCT 59.440 45.455 0.00 0.00 38.54 4.75
4379 4570 2.927871 GCACATTGATGGTGAGTTTGCC 60.928 50.000 0.00 0.00 38.54 4.52
4380 4571 2.331194 GCACATTGATGGTGAGTTTGC 58.669 47.619 0.00 0.00 38.54 3.68
4381 4572 2.669113 CGGCACATTGATGGTGAGTTTG 60.669 50.000 0.00 0.00 38.54 2.93
4382 4573 1.541147 CGGCACATTGATGGTGAGTTT 59.459 47.619 0.00 0.00 38.54 2.66
4383 4574 1.167851 CGGCACATTGATGGTGAGTT 58.832 50.000 0.00 0.00 38.54 3.01
4384 4575 0.036732 ACGGCACATTGATGGTGAGT 59.963 50.000 0.00 0.00 38.54 3.41
4385 4576 1.665679 GTACGGCACATTGATGGTGAG 59.334 52.381 0.00 0.00 38.54 3.51
4386 4577 1.277842 AGTACGGCACATTGATGGTGA 59.722 47.619 0.00 0.00 38.54 4.02
4387 4578 1.665679 GAGTACGGCACATTGATGGTG 59.334 52.381 0.00 0.00 39.25 4.17
4388 4579 1.739035 CGAGTACGGCACATTGATGGT 60.739 52.381 0.00 0.00 35.72 3.55
4389 4580 0.930310 CGAGTACGGCACATTGATGG 59.070 55.000 0.00 0.00 35.72 3.51
4390 4581 1.640428 ACGAGTACGGCACATTGATG 58.360 50.000 0.00 0.00 44.46 3.07
4401 4592 2.019206 CGACCGTCGACGAGTACG 59.981 66.667 37.65 28.34 43.74 3.67
4402 4593 2.397252 CCGACCGTCGACGAGTAC 59.603 66.667 37.65 22.36 43.74 2.73
4403 4594 2.815211 CCCGACCGTCGACGAGTA 60.815 66.667 37.65 0.00 43.74 2.59
4406 4597 4.783621 ATCCCCGACCGTCGACGA 62.784 66.667 37.65 17.43 43.74 4.20
4407 4598 4.247612 GATCCCCGACCGTCGACG 62.248 72.222 30.33 30.33 43.74 5.12
4408 4599 3.897320 GGATCCCCGACCGTCGAC 61.897 72.222 22.40 5.18 43.74 4.20
4418 4609 2.138831 GTACCCCAGACGGATCCCC 61.139 68.421 6.06 0.00 0.00 4.81
4419 4610 1.075450 AGTACCCCAGACGGATCCC 60.075 63.158 6.06 0.00 0.00 3.85
4420 4611 1.453762 CGAGTACCCCAGACGGATCC 61.454 65.000 0.00 0.00 0.00 3.36
4421 4612 0.750911 ACGAGTACCCCAGACGGATC 60.751 60.000 0.00 0.00 0.00 3.36
4422 4613 0.324091 AACGAGTACCCCAGACGGAT 60.324 55.000 0.00 0.00 0.00 4.18
4423 4614 0.962356 GAACGAGTACCCCAGACGGA 60.962 60.000 0.00 0.00 0.00 4.69
4424 4615 0.964358 AGAACGAGTACCCCAGACGG 60.964 60.000 0.00 0.00 0.00 4.79
4425 4616 0.450983 GAGAACGAGTACCCCAGACG 59.549 60.000 0.00 0.00 0.00 4.18
4426 4617 0.450983 CGAGAACGAGTACCCCAGAC 59.549 60.000 0.00 0.00 42.66 3.51
4427 4618 0.325933 TCGAGAACGAGTACCCCAGA 59.674 55.000 0.00 0.00 43.81 3.86
4428 4619 2.864114 TCGAGAACGAGTACCCCAG 58.136 57.895 0.00 0.00 43.81 4.45
4439 4630 1.450905 CAAACTTCCGTCGTCGAGAAC 59.549 52.381 2.98 0.00 39.71 3.01
4440 4631 1.762419 CAAACTTCCGTCGTCGAGAA 58.238 50.000 2.98 4.91 39.71 2.87
4441 4632 0.662374 GCAAACTTCCGTCGTCGAGA 60.662 55.000 2.98 0.00 39.71 4.04
4442 4633 1.615107 GGCAAACTTCCGTCGTCGAG 61.615 60.000 2.98 0.00 39.71 4.04
4443 4634 1.662446 GGCAAACTTCCGTCGTCGA 60.662 57.895 2.98 0.00 39.71 4.20
4444 4635 2.664436 GGGCAAACTTCCGTCGTCG 61.664 63.158 0.00 0.00 0.00 5.12
4445 4636 2.664436 CGGGCAAACTTCCGTCGTC 61.664 63.158 0.00 0.00 41.23 4.20
4446 4637 2.663852 CGGGCAAACTTCCGTCGT 60.664 61.111 0.00 0.00 41.23 4.34
4447 4638 3.419759 CCGGGCAAACTTCCGTCG 61.420 66.667 0.00 0.00 44.32 5.12
4448 4639 3.053896 CCCGGGCAAACTTCCGTC 61.054 66.667 8.08 0.00 44.32 4.79
4449 4640 3.881104 ACCCGGGCAAACTTCCGT 61.881 61.111 24.08 0.00 44.32 4.69
4450 4641 3.361977 CACCCGGGCAAACTTCCG 61.362 66.667 24.08 0.00 45.29 4.30
4451 4642 1.524008 CTTCACCCGGGCAAACTTCC 61.524 60.000 24.08 0.00 0.00 3.46
4452 4643 1.524008 CCTTCACCCGGGCAAACTTC 61.524 60.000 24.08 0.00 0.00 3.01
4453 4644 1.530655 CCTTCACCCGGGCAAACTT 60.531 57.895 24.08 0.00 0.00 2.66
4454 4645 2.115266 CCTTCACCCGGGCAAACT 59.885 61.111 24.08 0.00 0.00 2.66
4455 4646 1.971695 CTCCTTCACCCGGGCAAAC 60.972 63.158 24.08 0.00 0.00 2.93
4456 4647 2.434331 CTCCTTCACCCGGGCAAA 59.566 61.111 24.08 14.57 0.00 3.68
4457 4648 4.344865 GCTCCTTCACCCGGGCAA 62.345 66.667 24.08 13.35 0.00 4.52
4460 4651 4.101448 CAGGCTCCTTCACCCGGG 62.101 72.222 22.25 22.25 0.00 5.73
4461 4652 4.101448 CCAGGCTCCTTCACCCGG 62.101 72.222 0.00 0.00 0.00 5.73
4462 4653 4.785453 GCCAGGCTCCTTCACCCG 62.785 72.222 3.29 0.00 0.00 5.28
4463 4654 2.988839 ATGCCAGGCTCCTTCACCC 61.989 63.158 14.15 0.00 0.00 4.61
4464 4655 1.751927 CATGCCAGGCTCCTTCACC 60.752 63.158 14.15 0.00 0.00 4.02
4465 4656 1.751927 CCATGCCAGGCTCCTTCAC 60.752 63.158 14.15 0.00 0.00 3.18
4466 4657 1.924939 TCCATGCCAGGCTCCTTCA 60.925 57.895 14.15 0.00 0.00 3.02
4467 4658 1.452833 GTCCATGCCAGGCTCCTTC 60.453 63.158 14.15 0.00 0.00 3.46
4468 4659 2.679716 GTCCATGCCAGGCTCCTT 59.320 61.111 14.15 0.00 0.00 3.36
4469 4660 3.790437 CGTCCATGCCAGGCTCCT 61.790 66.667 14.15 0.00 0.00 3.69
4475 4666 3.958147 AACTCCGCGTCCATGCCAG 62.958 63.158 4.92 0.00 0.00 4.85
4476 4667 3.545124 AAACTCCGCGTCCATGCCA 62.545 57.895 4.92 0.00 0.00 4.92
4477 4668 1.862602 AAAAACTCCGCGTCCATGCC 61.863 55.000 4.92 0.00 0.00 4.40
4478 4669 0.800012 TAAAAACTCCGCGTCCATGC 59.200 50.000 4.92 0.00 0.00 4.06
4479 4670 2.343101 TCTAAAAACTCCGCGTCCATG 58.657 47.619 4.92 0.00 0.00 3.66
4480 4671 2.618053 CTCTAAAAACTCCGCGTCCAT 58.382 47.619 4.92 0.00 0.00 3.41
4481 4672 1.938016 GCTCTAAAAACTCCGCGTCCA 60.938 52.381 4.92 0.00 0.00 4.02
4482 4673 0.720027 GCTCTAAAAACTCCGCGTCC 59.280 55.000 4.92 0.00 0.00 4.79
4483 4674 1.425412 TGCTCTAAAAACTCCGCGTC 58.575 50.000 4.92 0.00 0.00 5.19
4484 4675 2.000447 GATGCTCTAAAAACTCCGCGT 59.000 47.619 4.92 0.00 0.00 6.01
4485 4676 2.271800 AGATGCTCTAAAAACTCCGCG 58.728 47.619 0.00 0.00 0.00 6.46
4486 4677 2.609916 GGAGATGCTCTAAAAACTCCGC 59.390 50.000 0.00 0.00 35.38 5.54
4487 4678 3.861840 TGGAGATGCTCTAAAAACTCCG 58.138 45.455 0.00 0.00 44.46 4.63
4488 4679 3.625313 GCTGGAGATGCTCTAAAAACTCC 59.375 47.826 0.00 0.00 42.64 3.85
4489 4680 3.625313 GGCTGGAGATGCTCTAAAAACTC 59.375 47.826 0.00 0.00 0.00 3.01
4490 4681 3.615155 GGCTGGAGATGCTCTAAAAACT 58.385 45.455 0.00 0.00 0.00 2.66
4491 4682 2.352960 CGGCTGGAGATGCTCTAAAAAC 59.647 50.000 0.00 0.00 0.00 2.43
4492 4683 2.632377 CGGCTGGAGATGCTCTAAAAA 58.368 47.619 0.00 0.00 0.00 1.94
4493 4684 1.743772 GCGGCTGGAGATGCTCTAAAA 60.744 52.381 0.00 0.00 0.00 1.52
4494 4685 0.179073 GCGGCTGGAGATGCTCTAAA 60.179 55.000 0.00 0.00 0.00 1.85
4495 4686 1.443407 GCGGCTGGAGATGCTCTAA 59.557 57.895 0.00 0.00 0.00 2.10
4496 4687 2.849964 CGCGGCTGGAGATGCTCTA 61.850 63.158 0.00 0.00 0.00 2.43
4497 4688 4.218578 CGCGGCTGGAGATGCTCT 62.219 66.667 0.00 0.00 0.00 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.