Multiple sequence alignment - TraesCS2D01G163100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G163100 chr2D 100.000 2867 0 0 1 2867 107563400 107560534 0.000000e+00 5295.0
1 TraesCS2D01G163100 chr2D 80.492 528 101 2 2341 2867 190216208 190215682 1.240000e-108 403.0
2 TraesCS2D01G163100 chr2D 78.676 272 50 8 1517 1784 107575483 107575216 1.060000e-39 174.0
3 TraesCS2D01G163100 chr2A 90.086 1281 70 23 770 2016 103894265 103893008 0.000000e+00 1609.0
4 TraesCS2D01G163100 chr2A 87.625 598 68 6 2271 2867 103831966 103831374 0.000000e+00 689.0
5 TraesCS2D01G163100 chr7D 85.417 528 46 14 2341 2867 309506458 309505961 1.180000e-143 520.0
6 TraesCS2D01G163100 chr7D 83.721 172 25 3 288 458 561804730 561804561 2.960000e-35 159.0
7 TraesCS2D01G163100 chr7A 84.659 528 50 14 2341 2867 372202620 372202123 5.520000e-137 497.0
8 TraesCS2D01G163100 chr7A 82.061 524 90 4 2346 2867 384400823 384400302 7.290000e-121 444.0
9 TraesCS2D01G163100 chr7A 87.135 171 20 2 288 457 16692196 16692027 2.920000e-45 193.0
10 TraesCS2D01G163100 chr7A 91.538 130 11 0 158 287 16692430 16692301 2.270000e-41 180.0
11 TraesCS2D01G163100 chr7A 87.578 161 13 2 1 160 16692842 16692688 2.270000e-41 180.0
12 TraesCS2D01G163100 chr7A 95.745 47 1 1 114 160 16692653 16692608 1.100000e-09 75.0
13 TraesCS2D01G163100 chr7A 95.000 40 2 0 2201 2240 56217299 56217260 2.380000e-06 63.9
14 TraesCS2D01G163100 chr5B 81.250 528 97 2 2341 2867 339991997 339992523 2.640000e-115 425.0
15 TraesCS2D01G163100 chr5B 75.942 345 80 3 2341 2683 184779098 184778755 1.060000e-39 174.0
16 TraesCS2D01G163100 chr5B 91.589 107 8 1 158 263 586454401 586454507 2.300000e-31 147.0
17 TraesCS2D01G163100 chr5B 97.297 37 1 0 124 160 586436579 586436615 2.380000e-06 63.9
18 TraesCS2D01G163100 chr5B 94.595 37 2 0 124 160 542350893 542350857 1.110000e-04 58.4
19 TraesCS2D01G163100 chr1B 81.250 528 97 2 2341 2867 157272771 157272245 2.640000e-115 425.0
20 TraesCS2D01G163100 chr1B 86.585 328 31 8 457 773 49222961 49223286 1.630000e-92 350.0
21 TraesCS2D01G163100 chr1B 85.276 326 36 7 457 773 444931056 444931378 2.750000e-85 326.0
22 TraesCS2D01G163100 chr1B 85.782 211 26 2 457 664 350251594 350251803 1.340000e-53 220.0
23 TraesCS2D01G163100 chr1B 90.152 132 12 1 158 288 350251168 350251299 1.370000e-38 171.0
24 TraesCS2D01G163100 chr1B 88.550 131 14 1 158 287 7493704 7493834 1.060000e-34 158.0
25 TraesCS2D01G163100 chr1B 86.923 130 16 1 158 286 49222503 49222632 8.280000e-31 145.0
26 TraesCS2D01G163100 chr1B 85.496 131 18 1 158 287 6247908 6248038 4.980000e-28 135.0
27 TraesCS2D01G163100 chr4B 79.924 528 92 6 2341 2867 391549367 391548853 2.700000e-100 375.0
28 TraesCS2D01G163100 chr2B 86.850 327 34 4 457 774 603666675 603667001 9.770000e-95 357.0
29 TraesCS2D01G163100 chr2B 85.627 327 36 5 457 774 247871510 247871834 1.650000e-87 333.0
30 TraesCS2D01G163100 chr2B 88.415 164 5 3 1 160 247870642 247870795 4.880000e-43 185.0
31 TraesCS2D01G163100 chr2B 88.550 131 15 0 158 288 247871045 247871175 2.960000e-35 159.0
32 TraesCS2D01G163100 chr2B 95.238 42 2 0 2187 2228 90380165 90380206 1.840000e-07 67.6
33 TraesCS2D01G163100 chr2B 94.595 37 2 0 124 160 603665701 603665737 1.110000e-04 58.4
34 TraesCS2D01G163100 chr6B 87.077 325 28 7 458 770 563333997 563334319 3.510000e-94 355.0
35 TraesCS2D01G163100 chr6B 85.366 123 10 1 35 157 563331874 563331988 1.400000e-23 121.0
36 TraesCS2D01G163100 chr6B 93.023 43 3 0 288 330 632176266 632176224 2.380000e-06 63.9
37 TraesCS2D01G163100 chr4D 86.810 326 26 5 457 773 352137052 352137369 5.880000e-92 348.0
38 TraesCS2D01G163100 chr4D 85.625 160 14 4 1 160 352136180 352136330 2.960000e-35 159.0
39 TraesCS2D01G163100 chr4D 97.872 47 0 1 114 160 352136365 352136410 2.370000e-11 80.5
40 TraesCS2D01G163100 chr4A 86.552 290 23 7 494 767 688341271 688340982 3.590000e-79 305.0
41 TraesCS2D01G163100 chr4A 89.764 127 12 1 158 283 673784555 673784681 8.220000e-36 161.0
42 TraesCS2D01G163100 chr4A 84.444 90 10 2 1 89 706850113 706850027 5.090000e-13 86.1
43 TraesCS2D01G163100 chr5A 83.086 337 20 9 459 769 687666590 687666915 3.640000e-69 272.0
44 TraesCS2D01G163100 chr5A 82.789 337 21 9 459 769 687660191 687660516 1.690000e-67 267.0
45 TraesCS2D01G163100 chr3A 80.672 238 42 4 2632 2867 498781684 498781919 6.310000e-42 182.0
46 TraesCS2D01G163100 chr3A 83.333 78 9 2 301 377 128512423 128512349 5.130000e-08 69.4
47 TraesCS2D01G163100 chr3A 90.909 44 4 0 2186 2229 64071507 64071464 3.080000e-05 60.2
48 TraesCS2D01G163100 chr7B 87.786 131 15 1 158 287 7286430 7286300 4.950000e-33 152.0
49 TraesCS2D01G163100 chr6D 93.478 46 2 1 285 329 419262804 419262759 1.840000e-07 67.6
50 TraesCS2D01G163100 chr5D 86.538 52 5 2 2186 2236 439209026 439208976 3.990000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G163100 chr2D 107560534 107563400 2866 True 5295.000000 5295 100.000000 1 2867 1 chr2D.!!$R1 2866
1 TraesCS2D01G163100 chr2D 190215682 190216208 526 True 403.000000 403 80.492000 2341 2867 1 chr2D.!!$R3 526
2 TraesCS2D01G163100 chr2A 103893008 103894265 1257 True 1609.000000 1609 90.086000 770 2016 1 chr2A.!!$R2 1246
3 TraesCS2D01G163100 chr2A 103831374 103831966 592 True 689.000000 689 87.625000 2271 2867 1 chr2A.!!$R1 596
4 TraesCS2D01G163100 chr7A 384400302 384400823 521 True 444.000000 444 82.061000 2346 2867 1 chr7A.!!$R3 521
5 TraesCS2D01G163100 chr5B 339991997 339992523 526 False 425.000000 425 81.250000 2341 2867 1 chr5B.!!$F1 526
6 TraesCS2D01G163100 chr1B 157272245 157272771 526 True 425.000000 425 81.250000 2341 2867 1 chr1B.!!$R1 526
7 TraesCS2D01G163100 chr1B 49222503 49223286 783 False 247.500000 350 86.754000 158 773 2 chr1B.!!$F4 615
8 TraesCS2D01G163100 chr4B 391548853 391549367 514 True 375.000000 375 79.924000 2341 2867 1 chr4B.!!$R1 526
9 TraesCS2D01G163100 chr2B 247870642 247871834 1192 False 225.666667 333 87.530667 1 774 3 chr2B.!!$F2 773
10 TraesCS2D01G163100 chr2B 603665701 603667001 1300 False 207.700000 357 90.722500 124 774 2 chr2B.!!$F3 650
11 TraesCS2D01G163100 chr6B 563331874 563334319 2445 False 238.000000 355 86.221500 35 770 2 chr6B.!!$F1 735

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
341 2662 0.112412 ATCCACACTTCCGCCCTTTT 59.888 50.0 0.0 0.0 0.0 2.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1915 4333 0.033504 GTCCCTCTGAAACGAGTGCA 59.966 55.0 0.0 0.0 0.0 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 4.892934 TCACCCTAACAAAGAAGTGCATTT 59.107 37.500 0.00 0.00 32.35 2.32
70 71 0.939106 GTGCATTTGTCCACGGCAAC 60.939 55.000 0.00 0.00 36.08 4.17
239 2375 1.692519 GCATCTACAACCGGGTATCCT 59.307 52.381 6.32 0.00 0.00 3.24
265 2401 1.963855 CATCAAACGTCCGGGCACA 60.964 57.895 6.96 0.00 0.00 4.57
334 2655 0.178068 CCTACCCATCCACACTTCCG 59.822 60.000 0.00 0.00 0.00 4.30
341 2662 0.112412 ATCCACACTTCCGCCCTTTT 59.888 50.000 0.00 0.00 0.00 2.27
346 2669 1.599797 ACTTCCGCCCTTTTGTCCG 60.600 57.895 0.00 0.00 0.00 4.79
347 2670 2.978018 CTTCCGCCCTTTTGTCCGC 61.978 63.158 0.00 0.00 0.00 5.54
375 2698 0.458025 CTACTTTCCACTCGCCGTCC 60.458 60.000 0.00 0.00 0.00 4.79
377 2700 1.079127 CTTTCCACTCGCCGTCCAT 60.079 57.895 0.00 0.00 0.00 3.41
415 2739 3.816523 GACGAGAGGCATAGTTAGCTAGT 59.183 47.826 0.00 0.00 40.66 2.57
472 2856 3.006756 ATGGTCACTGTCCGCGGAG 62.007 63.158 31.97 21.15 0.00 4.63
473 2857 3.371063 GGTCACTGTCCGCGGAGA 61.371 66.667 31.97 28.16 0.00 3.71
536 2927 4.219944 ACGTCCAGTTGTAGATGCTCTTAA 59.780 41.667 0.00 0.00 0.00 1.85
600 2991 3.102204 TGGGCTACTGGTTAGTTAGGTC 58.898 50.000 0.00 0.00 38.36 3.85
618 3009 0.616395 TCTGGTTAGTGGCCGATGGA 60.616 55.000 0.00 0.00 0.00 3.41
631 3022 3.374058 GGCCGATGGATTAATATTGGTCG 59.626 47.826 0.00 4.59 31.59 4.79
775 3173 4.559063 CTGGATCCGCCCTGCAGG 62.559 72.222 26.87 26.87 39.47 4.85
801 3199 0.173481 TCTGAACTTCTGATCCCGCG 59.827 55.000 0.00 0.00 0.00 6.46
820 3218 4.022589 CCGCGTAGGATCTTAATTAGGTGA 60.023 45.833 4.92 0.00 45.00 4.02
827 3225 5.542635 AGGATCTTAATTAGGTGATGCCGTA 59.457 40.000 10.62 0.00 43.70 4.02
828 3226 6.213600 AGGATCTTAATTAGGTGATGCCGTAT 59.786 38.462 10.62 0.00 43.70 3.06
829 3227 6.313905 GGATCTTAATTAGGTGATGCCGTATG 59.686 42.308 0.00 0.00 43.70 2.39
830 3228 6.413783 TCTTAATTAGGTGATGCCGTATGA 57.586 37.500 0.00 0.00 43.70 2.15
831 3229 7.004555 TCTTAATTAGGTGATGCCGTATGAT 57.995 36.000 0.00 0.00 43.70 2.45
832 3230 7.450074 TCTTAATTAGGTGATGCCGTATGATT 58.550 34.615 0.00 0.00 43.70 2.57
833 3231 5.947228 AATTAGGTGATGCCGTATGATTG 57.053 39.130 0.00 0.00 43.70 2.67
834 3232 4.415881 TTAGGTGATGCCGTATGATTGT 57.584 40.909 0.00 0.00 43.70 2.71
853 3251 8.862325 TGATTGTATGAACATTAGTCCAAACT 57.138 30.769 0.00 0.00 36.03 2.66
885 3283 3.895232 ACTGTATTCAGGAATCGCACT 57.105 42.857 4.24 0.00 45.14 4.40
890 3288 5.245531 TGTATTCAGGAATCGCACTTTTCT 58.754 37.500 0.00 0.00 32.50 2.52
894 3292 2.160417 CAGGAATCGCACTTTTCTGTCC 59.840 50.000 0.00 0.00 0.00 4.02
904 3302 2.337879 TTTTCTGTCCGTGCCCTGCT 62.338 55.000 0.00 0.00 0.00 4.24
939 3344 5.204409 ACGGTCCTAATATGCGATTGTAA 57.796 39.130 0.00 0.00 0.00 2.41
957 3370 2.403252 AATCCTCACCCTAAACGCAG 57.597 50.000 0.00 0.00 0.00 5.18
978 3391 2.185004 TAGTGCAAAGACTGGAAGCC 57.815 50.000 0.00 0.00 37.60 4.35
1011 3424 1.838715 AGAGCAAGCATGAGACTCCAT 59.161 47.619 0.00 0.00 0.00 3.41
1012 3425 2.239150 AGAGCAAGCATGAGACTCCATT 59.761 45.455 0.00 0.00 0.00 3.16
1013 3426 3.453717 AGAGCAAGCATGAGACTCCATTA 59.546 43.478 0.00 0.00 0.00 1.90
1020 3433 3.553511 GCATGAGACTCCATTACTGTTCG 59.446 47.826 0.00 0.00 0.00 3.95
1024 3437 2.826128 AGACTCCATTACTGTTCGCTCA 59.174 45.455 0.00 0.00 0.00 4.26
1030 3443 0.386352 TTACTGTTCGCTCACCGTCG 60.386 55.000 0.00 0.00 38.35 5.12
1042 3455 3.382832 CCGTCGTCCTGCTCCCTT 61.383 66.667 0.00 0.00 0.00 3.95
1047 3460 1.219393 CGTCCTGCTCCCTTTCCTC 59.781 63.158 0.00 0.00 0.00 3.71
1090 3503 4.709886 TCGATTTCTTCTACCATGTCCAGA 59.290 41.667 0.00 0.00 0.00 3.86
1100 3513 4.021102 ACCATGTCCAGAAGGTAAACTG 57.979 45.455 0.00 0.00 35.89 3.16
1106 3519 6.488769 TGTCCAGAAGGTAAACTGACTAAA 57.511 37.500 0.00 0.00 36.38 1.85
1107 3520 7.074653 TGTCCAGAAGGTAAACTGACTAAAT 57.925 36.000 0.00 0.00 36.38 1.40
1108 3521 7.514721 TGTCCAGAAGGTAAACTGACTAAATT 58.485 34.615 0.00 0.00 36.38 1.82
1109 3522 8.653191 TGTCCAGAAGGTAAACTGACTAAATTA 58.347 33.333 0.00 0.00 36.38 1.40
1110 3523 9.498176 GTCCAGAAGGTAAACTGACTAAATTAA 57.502 33.333 0.00 0.00 36.38 1.40
1138 3551 4.536364 ACATTTTATTGCTCGATCGTGG 57.464 40.909 15.94 10.45 0.00 4.94
1139 3552 3.938963 ACATTTTATTGCTCGATCGTGGT 59.061 39.130 15.94 0.00 0.00 4.16
1156 3569 2.351726 GTGGTTGTGTGTGTCTGAACTC 59.648 50.000 0.00 0.00 0.00 3.01
1158 3571 2.609459 GGTTGTGTGTGTCTGAACTCTG 59.391 50.000 0.00 0.00 0.00 3.35
1159 3572 3.521560 GTTGTGTGTGTCTGAACTCTGA 58.478 45.455 0.00 0.00 0.00 3.27
1160 3573 3.885724 TGTGTGTGTCTGAACTCTGAA 57.114 42.857 0.00 0.00 0.00 3.02
1161 3574 3.521560 TGTGTGTGTCTGAACTCTGAAC 58.478 45.455 0.00 0.00 0.00 3.18
1162 3575 3.056179 TGTGTGTGTCTGAACTCTGAACA 60.056 43.478 0.00 0.00 0.00 3.18
1163 3576 3.932710 GTGTGTGTCTGAACTCTGAACAA 59.067 43.478 0.00 0.00 0.00 2.83
1164 3577 4.391830 GTGTGTGTCTGAACTCTGAACAAA 59.608 41.667 0.00 0.00 0.00 2.83
1349 3762 2.664851 CGGACTTCTGCAACGCCA 60.665 61.111 0.00 0.00 0.00 5.69
1350 3763 2.946762 GGACTTCTGCAACGCCAC 59.053 61.111 0.00 0.00 0.00 5.01
1352 3765 1.891919 GACTTCTGCAACGCCACCA 60.892 57.895 0.00 0.00 0.00 4.17
1361 3774 2.184167 AACGCCACCAACACCTTCG 61.184 57.895 0.00 0.00 0.00 3.79
1362 3775 4.025401 CGCCACCAACACCTTCGC 62.025 66.667 0.00 0.00 0.00 4.70
1430 3847 2.496470 GTTCCCTCTGTAATCTGTCGGT 59.504 50.000 0.00 0.00 0.00 4.69
1633 4050 2.835431 CCCGCATCCTCCTCGACT 60.835 66.667 0.00 0.00 0.00 4.18
1643 4060 2.516460 CCTCGACTCCGGGATCGT 60.516 66.667 22.30 8.31 38.95 3.73
1900 4318 0.940519 TGTGACGCGGTAACCTTTCG 60.941 55.000 12.47 0.00 0.00 3.46
1901 4319 0.940991 GTGACGCGGTAACCTTTCGT 60.941 55.000 12.47 0.00 35.98 3.85
1926 4344 4.430423 CGGCGCTGCACTCGTTTC 62.430 66.667 7.64 0.00 0.00 2.78
1927 4345 3.345808 GGCGCTGCACTCGTTTCA 61.346 61.111 7.64 0.00 0.00 2.69
1928 4346 2.171940 GCGCTGCACTCGTTTCAG 59.828 61.111 0.00 0.00 0.00 3.02
1930 4348 1.777819 CGCTGCACTCGTTTCAGAG 59.222 57.895 0.00 0.00 43.56 3.35
1932 4350 1.294659 GCTGCACTCGTTTCAGAGGG 61.295 60.000 0.00 0.00 44.21 4.30
1958 4388 1.962092 GCGCGCGGTCATTTTCACTA 61.962 55.000 33.06 0.00 0.00 2.74
1963 4393 3.308866 GCGCGGTCATTTTCACTATAGTT 59.691 43.478 8.83 0.00 0.00 2.24
1966 4396 5.732647 CGCGGTCATTTTCACTATAGTTTTG 59.267 40.000 1.56 0.00 0.00 2.44
1968 4398 6.607689 CGGTCATTTTCACTATAGTTTTGCA 58.392 36.000 1.56 0.00 0.00 4.08
1970 4400 7.271223 CGGTCATTTTCACTATAGTTTTGCAAG 59.729 37.037 1.56 0.00 0.00 4.01
1971 4401 8.082242 GGTCATTTTCACTATAGTTTTGCAAGT 58.918 33.333 1.56 0.00 0.00 3.16
1972 4402 9.118236 GTCATTTTCACTATAGTTTTGCAAGTC 57.882 33.333 1.56 0.00 0.00 3.01
1973 4403 9.066892 TCATTTTCACTATAGTTTTGCAAGTCT 57.933 29.630 1.56 5.01 0.00 3.24
1978 4409 8.534333 TCACTATAGTTTTGCAAGTCTTAGTG 57.466 34.615 24.45 24.45 35.65 2.74
1985 4416 3.423539 TGCAAGTCTTAGTGGATGCTT 57.576 42.857 0.00 0.00 34.97 3.91
1986 4417 4.551702 TGCAAGTCTTAGTGGATGCTTA 57.448 40.909 0.00 0.00 34.97 3.09
1987 4418 5.102953 TGCAAGTCTTAGTGGATGCTTAT 57.897 39.130 0.00 0.00 34.97 1.73
1988 4419 5.118990 TGCAAGTCTTAGTGGATGCTTATC 58.881 41.667 0.00 0.00 34.97 1.75
1999 4430 5.417754 TGGATGCTTATCCATGAGATCTC 57.582 43.478 16.21 16.21 45.19 2.75
2000 4431 4.842380 TGGATGCTTATCCATGAGATCTCA 59.158 41.667 27.03 27.03 45.19 3.27
2021 4452 6.535963 TCACATTGAGATCTGTATCTGTGT 57.464 37.500 0.00 0.00 42.73 3.72
2022 4453 6.939622 TCACATTGAGATCTGTATCTGTGTT 58.060 36.000 0.00 0.00 42.73 3.32
2023 4454 8.066612 TCACATTGAGATCTGTATCTGTGTTA 57.933 34.615 0.00 0.00 42.73 2.41
2024 4455 8.531146 TCACATTGAGATCTGTATCTGTGTTAA 58.469 33.333 0.00 0.00 42.73 2.01
2025 4456 9.154847 CACATTGAGATCTGTATCTGTGTTAAA 57.845 33.333 0.00 0.00 42.73 1.52
2026 4457 9.725019 ACATTGAGATCTGTATCTGTGTTAAAA 57.275 29.630 0.00 0.00 42.73 1.52
2060 4491 9.607988 TTTTTCTCTAACTGTTATGTCACTTCA 57.392 29.630 0.00 0.00 0.00 3.02
2061 4492 8.589335 TTTCTCTAACTGTTATGTCACTTCAC 57.411 34.615 0.00 0.00 0.00 3.18
2062 4493 7.526142 TCTCTAACTGTTATGTCACTTCACT 57.474 36.000 0.00 0.00 0.00 3.41
2063 4494 8.631480 TCTCTAACTGTTATGTCACTTCACTA 57.369 34.615 0.00 0.00 0.00 2.74
2064 4495 9.074576 TCTCTAACTGTTATGTCACTTCACTAA 57.925 33.333 0.00 0.00 0.00 2.24
2065 4496 9.692749 CTCTAACTGTTATGTCACTTCACTAAA 57.307 33.333 0.00 0.00 0.00 1.85
2068 4499 8.732746 AACTGTTATGTCACTTCACTAAAACT 57.267 30.769 0.00 0.00 0.00 2.66
2069 4500 8.732746 ACTGTTATGTCACTTCACTAAAACTT 57.267 30.769 0.00 0.00 0.00 2.66
2070 4501 8.612619 ACTGTTATGTCACTTCACTAAAACTTG 58.387 33.333 0.00 0.00 0.00 3.16
2071 4502 7.925993 TGTTATGTCACTTCACTAAAACTTGG 58.074 34.615 0.00 0.00 0.00 3.61
2072 4503 7.554835 TGTTATGTCACTTCACTAAAACTTGGT 59.445 33.333 0.00 0.00 0.00 3.67
2073 4504 8.403236 GTTATGTCACTTCACTAAAACTTGGTT 58.597 33.333 0.00 0.00 0.00 3.67
2074 4505 9.616156 TTATGTCACTTCACTAAAACTTGGTTA 57.384 29.630 0.00 0.00 0.00 2.85
2075 4506 7.925043 TGTCACTTCACTAAAACTTGGTTAA 57.075 32.000 0.00 0.00 0.00 2.01
2076 4507 8.338072 TGTCACTTCACTAAAACTTGGTTAAA 57.662 30.769 0.00 0.00 0.00 1.52
2077 4508 8.962679 TGTCACTTCACTAAAACTTGGTTAAAT 58.037 29.630 0.00 0.00 0.00 1.40
2078 4509 9.447040 GTCACTTCACTAAAACTTGGTTAAATC 57.553 33.333 0.00 0.00 0.00 2.17
2079 4510 9.403583 TCACTTCACTAAAACTTGGTTAAATCT 57.596 29.630 0.00 0.00 0.00 2.40
2080 4511 9.665264 CACTTCACTAAAACTTGGTTAAATCTC 57.335 33.333 0.00 0.00 0.00 2.75
2081 4512 9.403583 ACTTCACTAAAACTTGGTTAAATCTCA 57.596 29.630 0.00 0.00 0.00 3.27
2082 4513 9.665264 CTTCACTAAAACTTGGTTAAATCTCAC 57.335 33.333 0.00 0.00 0.00 3.51
2083 4514 8.974060 TCACTAAAACTTGGTTAAATCTCACT 57.026 30.769 0.00 0.00 0.00 3.41
2084 4515 9.052759 TCACTAAAACTTGGTTAAATCTCACTC 57.947 33.333 0.00 0.00 0.00 3.51
2085 4516 9.057089 CACTAAAACTTGGTTAAATCTCACTCT 57.943 33.333 0.00 0.00 0.00 3.24
2089 4520 8.608844 AAACTTGGTTAAATCTCACTCTACTG 57.391 34.615 0.00 0.00 0.00 2.74
2090 4521 7.540474 ACTTGGTTAAATCTCACTCTACTGA 57.460 36.000 0.00 0.00 0.00 3.41
2091 4522 7.607250 ACTTGGTTAAATCTCACTCTACTGAG 58.393 38.462 0.00 0.00 45.43 3.35
2099 4530 4.456535 TCTCACTCTACTGAGACATAGCC 58.543 47.826 0.00 0.00 41.49 3.93
2100 4531 4.080299 TCTCACTCTACTGAGACATAGCCA 60.080 45.833 0.00 0.00 41.49 4.75
2101 4532 3.948473 TCACTCTACTGAGACATAGCCAC 59.052 47.826 0.00 0.00 42.73 5.01
2102 4533 3.696548 CACTCTACTGAGACATAGCCACA 59.303 47.826 0.00 0.00 42.73 4.17
2103 4534 3.697045 ACTCTACTGAGACATAGCCACAC 59.303 47.826 0.00 0.00 42.73 3.82
2104 4535 3.951037 CTCTACTGAGACATAGCCACACT 59.049 47.826 0.00 0.00 42.73 3.55
2105 4536 3.948473 TCTACTGAGACATAGCCACACTC 59.052 47.826 0.00 0.00 0.00 3.51
2106 4537 2.813907 ACTGAGACATAGCCACACTCT 58.186 47.619 0.00 0.00 0.00 3.24
2107 4538 3.169099 ACTGAGACATAGCCACACTCTT 58.831 45.455 0.00 0.00 0.00 2.85
2108 4539 3.580458 ACTGAGACATAGCCACACTCTTT 59.420 43.478 0.00 0.00 0.00 2.52
2109 4540 4.180057 CTGAGACATAGCCACACTCTTTC 58.820 47.826 0.00 0.00 0.00 2.62
2110 4541 3.578282 TGAGACATAGCCACACTCTTTCA 59.422 43.478 0.00 0.00 0.00 2.69
2111 4542 3.929610 GAGACATAGCCACACTCTTTCAC 59.070 47.826 0.00 0.00 0.00 3.18
2112 4543 3.580458 AGACATAGCCACACTCTTTCACT 59.420 43.478 0.00 0.00 0.00 3.41
2113 4544 4.772624 AGACATAGCCACACTCTTTCACTA 59.227 41.667 0.00 0.00 0.00 2.74
2114 4545 5.423610 AGACATAGCCACACTCTTTCACTAT 59.576 40.000 0.00 0.00 0.00 2.12
2115 4546 6.054860 ACATAGCCACACTCTTTCACTATT 57.945 37.500 0.00 0.00 0.00 1.73
2116 4547 6.476378 ACATAGCCACACTCTTTCACTATTT 58.524 36.000 0.00 0.00 0.00 1.40
2117 4548 6.942576 ACATAGCCACACTCTTTCACTATTTT 59.057 34.615 0.00 0.00 0.00 1.82
2118 4549 8.100791 ACATAGCCACACTCTTTCACTATTTTA 58.899 33.333 0.00 0.00 0.00 1.52
2119 4550 9.113838 CATAGCCACACTCTTTCACTATTTTAT 57.886 33.333 0.00 0.00 0.00 1.40
2120 4551 7.617041 AGCCACACTCTTTCACTATTTTATC 57.383 36.000 0.00 0.00 0.00 1.75
2121 4552 7.398024 AGCCACACTCTTTCACTATTTTATCT 58.602 34.615 0.00 0.00 0.00 1.98
2122 4553 7.550906 AGCCACACTCTTTCACTATTTTATCTC 59.449 37.037 0.00 0.00 0.00 2.75
2123 4554 7.550906 GCCACACTCTTTCACTATTTTATCTCT 59.449 37.037 0.00 0.00 0.00 3.10
2124 4555 9.092876 CCACACTCTTTCACTATTTTATCTCTC 57.907 37.037 0.00 0.00 0.00 3.20
2125 4556 8.802856 CACACTCTTTCACTATTTTATCTCTCG 58.197 37.037 0.00 0.00 0.00 4.04
2126 4557 7.489757 ACACTCTTTCACTATTTTATCTCTCGC 59.510 37.037 0.00 0.00 0.00 5.03
2127 4558 7.704472 CACTCTTTCACTATTTTATCTCTCGCT 59.296 37.037 0.00 0.00 0.00 4.93
2128 4559 8.254508 ACTCTTTCACTATTTTATCTCTCGCTT 58.745 33.333 0.00 0.00 0.00 4.68
2129 4560 9.737427 CTCTTTCACTATTTTATCTCTCGCTTA 57.263 33.333 0.00 0.00 0.00 3.09
2130 4561 9.737427 TCTTTCACTATTTTATCTCTCGCTTAG 57.263 33.333 0.00 0.00 0.00 2.18
2131 4562 9.737427 CTTTCACTATTTTATCTCTCGCTTAGA 57.263 33.333 0.00 0.00 0.00 2.10
2134 4565 9.900710 TCACTATTTTATCTCTCGCTTAGATTC 57.099 33.333 0.00 0.00 35.36 2.52
2135 4566 9.134734 CACTATTTTATCTCTCGCTTAGATTCC 57.865 37.037 0.00 0.00 35.36 3.01
2136 4567 8.024285 ACTATTTTATCTCTCGCTTAGATTCCG 58.976 37.037 0.00 0.00 35.36 4.30
2137 4568 6.387041 TTTTATCTCTCGCTTAGATTCCGA 57.613 37.500 0.00 0.00 35.36 4.55
2138 4569 6.387041 TTTATCTCTCGCTTAGATTCCGAA 57.613 37.500 0.00 0.00 35.36 4.30
2139 4570 4.920640 ATCTCTCGCTTAGATTCCGAAA 57.079 40.909 0.00 0.00 32.41 3.46
2140 4571 4.294416 TCTCTCGCTTAGATTCCGAAAG 57.706 45.455 0.00 0.00 32.41 2.62
2141 4572 2.792116 CTCTCGCTTAGATTCCGAAAGC 59.208 50.000 6.12 6.12 41.71 3.51
2142 4573 2.427453 TCTCGCTTAGATTCCGAAAGCT 59.573 45.455 11.80 0.00 42.70 3.74
2143 4574 2.792116 CTCGCTTAGATTCCGAAAGCTC 59.208 50.000 11.80 0.00 42.70 4.09
2144 4575 2.427453 TCGCTTAGATTCCGAAAGCTCT 59.573 45.455 11.80 0.00 42.70 4.09
2145 4576 2.792116 CGCTTAGATTCCGAAAGCTCTC 59.208 50.000 11.80 0.00 42.70 3.20
2146 4577 2.792116 GCTTAGATTCCGAAAGCTCTCG 59.208 50.000 1.43 1.43 41.85 4.04
2147 4578 3.489398 GCTTAGATTCCGAAAGCTCTCGA 60.489 47.826 11.91 0.00 41.85 4.04
2148 4579 4.794655 GCTTAGATTCCGAAAGCTCTCGAT 60.795 45.833 11.91 0.00 41.85 3.59
2149 4580 5.563085 GCTTAGATTCCGAAAGCTCTCGATA 60.563 44.000 11.91 0.00 41.85 2.92
2150 4581 4.231718 AGATTCCGAAAGCTCTCGATAC 57.768 45.455 11.91 0.00 41.44 2.24
2151 4582 3.632604 AGATTCCGAAAGCTCTCGATACA 59.367 43.478 11.91 0.00 41.44 2.29
2152 4583 4.279671 AGATTCCGAAAGCTCTCGATACAT 59.720 41.667 11.91 0.00 41.44 2.29
2153 4584 4.386867 TTCCGAAAGCTCTCGATACATT 57.613 40.909 11.91 0.00 41.44 2.71
2154 4585 3.706698 TCCGAAAGCTCTCGATACATTG 58.293 45.455 11.91 0.00 41.44 2.82
2155 4586 3.130516 TCCGAAAGCTCTCGATACATTGT 59.869 43.478 11.91 0.00 41.44 2.71
2156 4587 3.865745 CCGAAAGCTCTCGATACATTGTT 59.134 43.478 11.91 0.00 41.44 2.83
2157 4588 4.330074 CCGAAAGCTCTCGATACATTGTTT 59.670 41.667 11.91 0.00 41.44 2.83
2158 4589 5.484958 CGAAAGCTCTCGATACATTGTTTC 58.515 41.667 2.47 0.00 41.44 2.78
2159 4590 5.500931 CGAAAGCTCTCGATACATTGTTTCC 60.501 44.000 2.47 0.00 41.44 3.13
2160 4591 3.448686 AGCTCTCGATACATTGTTTCCG 58.551 45.455 0.00 0.00 0.00 4.30
2161 4592 3.119101 AGCTCTCGATACATTGTTTCCGT 60.119 43.478 0.00 0.00 0.00 4.69
2162 4593 3.617263 GCTCTCGATACATTGTTTCCGTT 59.383 43.478 0.00 0.00 0.00 4.44
2163 4594 4.259850 GCTCTCGATACATTGTTTCCGTTC 60.260 45.833 0.00 0.00 0.00 3.95
2164 4595 4.811908 TCTCGATACATTGTTTCCGTTCA 58.188 39.130 0.00 0.00 0.00 3.18
2165 4596 5.416083 TCTCGATACATTGTTTCCGTTCAT 58.584 37.500 0.00 0.00 0.00 2.57
2166 4597 5.872617 TCTCGATACATTGTTTCCGTTCATT 59.127 36.000 0.00 0.00 0.00 2.57
2167 4598 6.035650 TCTCGATACATTGTTTCCGTTCATTC 59.964 38.462 0.00 0.00 0.00 2.67
2168 4599 4.955590 CGATACATTGTTTCCGTTCATTCG 59.044 41.667 0.00 0.00 0.00 3.34
2169 4600 5.445407 CGATACATTGTTTCCGTTCATTCGT 60.445 40.000 0.00 0.00 0.00 3.85
2170 4601 3.884169 ACATTGTTTCCGTTCATTCGTG 58.116 40.909 0.00 0.00 0.00 4.35
2171 4602 3.233578 CATTGTTTCCGTTCATTCGTGG 58.766 45.455 0.00 0.00 0.00 4.94
2172 4603 1.956297 TGTTTCCGTTCATTCGTGGT 58.044 45.000 0.00 0.00 0.00 4.16
2173 4604 3.109044 TGTTTCCGTTCATTCGTGGTA 57.891 42.857 0.00 0.00 0.00 3.25
2174 4605 3.464907 TGTTTCCGTTCATTCGTGGTAA 58.535 40.909 0.00 0.00 0.00 2.85
2175 4606 3.248125 TGTTTCCGTTCATTCGTGGTAAC 59.752 43.478 0.00 0.00 0.00 2.50
2176 4607 3.389925 TTCCGTTCATTCGTGGTAACT 57.610 42.857 0.00 0.00 37.61 2.24
2177 4608 2.950433 TCCGTTCATTCGTGGTAACTC 58.050 47.619 0.00 0.00 37.61 3.01
2178 4609 2.296752 TCCGTTCATTCGTGGTAACTCA 59.703 45.455 0.00 0.00 37.61 3.41
2179 4610 3.056393 TCCGTTCATTCGTGGTAACTCAT 60.056 43.478 0.00 0.00 37.61 2.90
2180 4611 4.158209 TCCGTTCATTCGTGGTAACTCATA 59.842 41.667 0.00 0.00 37.61 2.15
2181 4612 4.865925 CCGTTCATTCGTGGTAACTCATAA 59.134 41.667 0.00 0.00 37.61 1.90
2182 4613 5.005394 CCGTTCATTCGTGGTAACTCATAAG 59.995 44.000 0.00 0.00 37.61 1.73
2183 4614 5.575606 CGTTCATTCGTGGTAACTCATAAGT 59.424 40.000 0.00 0.00 37.32 2.24
2184 4615 6.748658 CGTTCATTCGTGGTAACTCATAAGTA 59.251 38.462 0.00 0.00 33.48 2.24
2185 4616 7.434307 CGTTCATTCGTGGTAACTCATAAGTAT 59.566 37.037 0.00 0.00 33.48 2.12
2186 4617 9.095065 GTTCATTCGTGGTAACTCATAAGTATT 57.905 33.333 0.00 0.00 33.48 1.89
2187 4618 9.661563 TTCATTCGTGGTAACTCATAAGTATTT 57.338 29.630 0.00 0.00 33.48 1.40
2188 4619 9.661563 TCATTCGTGGTAACTCATAAGTATTTT 57.338 29.630 0.00 0.00 33.48 1.82
2229 4660 9.888878 ATTTTATTGACTCAATATGAAGCATCG 57.111 29.630 11.51 0.00 36.41 3.84
2230 4661 8.661352 TTTATTGACTCAATATGAAGCATCGA 57.339 30.769 11.51 0.00 36.41 3.59
2231 4662 6.782298 ATTGACTCAATATGAAGCATCGAG 57.218 37.500 2.17 0.00 31.77 4.04
2232 4663 5.520376 TGACTCAATATGAAGCATCGAGA 57.480 39.130 0.00 0.00 0.00 4.04
2233 4664 5.527033 TGACTCAATATGAAGCATCGAGAG 58.473 41.667 0.00 0.00 0.00 3.20
2234 4665 4.880759 ACTCAATATGAAGCATCGAGAGG 58.119 43.478 0.00 0.00 0.00 3.69
2235 4666 4.586421 ACTCAATATGAAGCATCGAGAGGA 59.414 41.667 0.00 0.00 0.00 3.71
2236 4667 4.876125 TCAATATGAAGCATCGAGAGGAC 58.124 43.478 0.00 0.00 0.00 3.85
2237 4668 4.342092 TCAATATGAAGCATCGAGAGGACA 59.658 41.667 0.00 0.00 0.00 4.02
2238 4669 2.593346 ATGAAGCATCGAGAGGACAC 57.407 50.000 0.00 0.00 0.00 3.67
2239 4670 1.256812 TGAAGCATCGAGAGGACACA 58.743 50.000 0.00 0.00 0.00 3.72
2240 4671 1.067565 TGAAGCATCGAGAGGACACAC 60.068 52.381 0.00 0.00 0.00 3.82
2241 4672 0.247736 AAGCATCGAGAGGACACACC 59.752 55.000 0.00 0.00 39.35 4.16
2253 4684 3.166489 GGACACACCTACTGCATACTC 57.834 52.381 0.00 0.00 35.41 2.59
2254 4685 2.159085 GGACACACCTACTGCATACTCC 60.159 54.545 0.00 0.00 35.41 3.85
2255 4686 1.831736 ACACACCTACTGCATACTCCC 59.168 52.381 0.00 0.00 0.00 4.30
2256 4687 2.111384 CACACCTACTGCATACTCCCT 58.889 52.381 0.00 0.00 0.00 4.20
2257 4688 2.501723 CACACCTACTGCATACTCCCTT 59.498 50.000 0.00 0.00 0.00 3.95
2258 4689 3.055094 CACACCTACTGCATACTCCCTTT 60.055 47.826 0.00 0.00 0.00 3.11
2259 4690 3.055094 ACACCTACTGCATACTCCCTTTG 60.055 47.826 0.00 0.00 0.00 2.77
2260 4691 3.055094 CACCTACTGCATACTCCCTTTGT 60.055 47.826 0.00 0.00 0.00 2.83
2261 4692 3.587506 ACCTACTGCATACTCCCTTTGTT 59.412 43.478 0.00 0.00 0.00 2.83
2262 4693 4.042934 ACCTACTGCATACTCCCTTTGTTT 59.957 41.667 0.00 0.00 0.00 2.83
2263 4694 5.010282 CCTACTGCATACTCCCTTTGTTTT 58.990 41.667 0.00 0.00 0.00 2.43
2264 4695 5.123979 CCTACTGCATACTCCCTTTGTTTTC 59.876 44.000 0.00 0.00 0.00 2.29
2265 4696 4.469657 ACTGCATACTCCCTTTGTTTTCA 58.530 39.130 0.00 0.00 0.00 2.69
2266 4697 4.892934 ACTGCATACTCCCTTTGTTTTCAA 59.107 37.500 0.00 0.00 38.10 2.69
2267 4698 5.362430 ACTGCATACTCCCTTTGTTTTCAAA 59.638 36.000 0.00 0.00 45.96 2.69
2268 4699 6.041979 ACTGCATACTCCCTTTGTTTTCAAAT 59.958 34.615 0.00 0.00 46.72 2.32
2269 4700 7.232534 ACTGCATACTCCCTTTGTTTTCAAATA 59.767 33.333 0.00 0.00 46.72 1.40
2270 4701 8.133024 TGCATACTCCCTTTGTTTTCAAATAT 57.867 30.769 0.00 0.00 46.72 1.28
2271 4702 9.249053 TGCATACTCCCTTTGTTTTCAAATATA 57.751 29.630 0.00 0.00 46.72 0.86
2276 4707 9.588096 ACTCCCTTTGTTTTCAAATATAAGACT 57.412 29.630 0.00 0.00 46.72 3.24
2366 4797 1.878088 CAGAATGCATTCATCTCGGGG 59.122 52.381 34.59 13.66 39.23 5.73
2368 4799 0.106569 AATGCATTCATCTCGGGGCA 60.107 50.000 5.99 0.00 35.54 5.36
2378 4809 0.687757 TCTCGGGGCAGAGCTTACAT 60.688 55.000 4.59 0.00 38.12 2.29
2436 4867 2.044946 ACCAATTGGGAGCTCCGC 60.045 61.111 27.89 18.93 41.15 5.54
2454 4885 0.933796 GCGAGTCATGCTTAAGCTCC 59.066 55.000 26.90 12.41 42.66 4.70
2465 4896 2.501223 TTAAGCTCCACCTCACGCGG 62.501 60.000 12.47 0.00 0.00 6.46
2519 4950 1.476488 GAGGTTTTGCGCCAATATGGT 59.524 47.619 4.18 0.00 40.46 3.55
2521 4952 3.093057 AGGTTTTGCGCCAATATGGTTA 58.907 40.909 4.18 0.00 40.46 2.85
2524 4955 4.440802 GGTTTTGCGCCAATATGGTTATGA 60.441 41.667 4.18 0.00 40.46 2.15
2564 4995 1.134580 ACAGCCATTCTCCTGTCATCG 60.135 52.381 0.00 0.00 37.77 3.84
2616 5059 2.606587 GGACCACCCATCTGGCACT 61.607 63.158 0.00 0.00 37.83 4.40
2636 5079 3.003173 CAAGGGCTCCGTCAGGGA 61.003 66.667 0.00 0.00 44.68 4.20
2648 5092 1.752436 CGTCAGGGAGACTCTATGCCT 60.752 57.143 1.74 0.00 45.32 4.75
2667 5111 2.431601 GCAGCTCTTCGTGCTCGT 60.432 61.111 8.17 0.00 38.92 4.18
2723 5167 1.076192 AGCTTGGCCATTCTGCAGT 59.924 52.632 14.67 0.00 0.00 4.40
2726 5170 0.957395 CTTGGCCATTCTGCAGTCGT 60.957 55.000 14.67 0.00 0.00 4.34
2770 5214 2.252855 GATCTCGCTCTACGCCGG 59.747 66.667 0.00 0.00 43.23 6.13
2812 5256 1.947456 TGTCATAGCTAGCGACATCGT 59.053 47.619 19.68 0.00 42.22 3.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.892934 TGCACTTCTTTGTTAGGGTGAATT 59.107 37.500 0.00 0.00 33.19 2.17
33 34 4.469657 TGCACTTCTTTGTTAGGGTGAAT 58.530 39.130 0.00 0.00 33.19 2.57
53 54 0.939106 GTGTTGCCGTGGACAAATGC 60.939 55.000 0.00 0.00 0.00 3.56
58 59 1.107114 AATTTGTGTTGCCGTGGACA 58.893 45.000 0.00 0.00 0.00 4.02
70 71 8.991243 ATTGATCCTATTGTGAACAATTTGTG 57.009 30.769 13.53 3.49 43.48 3.33
234 2370 3.199677 CGTTTGATGCGGGTTTAGGATA 58.800 45.455 0.00 0.00 0.00 2.59
239 2375 1.158434 GGACGTTTGATGCGGGTTTA 58.842 50.000 0.00 0.00 0.00 2.01
248 2384 1.002624 ATGTGCCCGGACGTTTGAT 60.003 52.632 0.73 0.00 0.00 2.57
265 2401 4.082523 CAGTCCCACGTGGCGGAT 62.083 66.667 29.75 11.40 0.00 4.18
276 2412 2.093341 TGGCTTAAATACCGTCAGTCCC 60.093 50.000 0.00 0.00 0.00 4.46
334 2655 3.733960 GTCGGCGGACAAAAGGGC 61.734 66.667 18.61 0.00 42.91 5.19
346 2669 2.098831 GGAAAGTAGCGGTGTCGGC 61.099 63.158 0.00 0.00 36.79 5.54
347 2670 1.012486 GTGGAAAGTAGCGGTGTCGG 61.012 60.000 0.00 0.00 36.79 4.79
352 2675 1.080025 GCGAGTGGAAAGTAGCGGT 60.080 57.895 0.00 0.00 0.00 5.68
375 2698 2.095008 CGTCGGAGATGTCCAGGATATG 60.095 54.545 9.94 0.00 44.18 1.78
377 2700 1.142262 TCGTCGGAGATGTCCAGGATA 59.858 52.381 9.94 0.00 44.18 2.59
415 2739 0.892063 TCCTACATGCTACGCACACA 59.108 50.000 0.00 0.00 43.04 3.72
426 2750 5.969423 ACCATGCAAAAGAAATCCTACATG 58.031 37.500 0.00 0.00 34.78 3.21
453 2777 2.815211 CCGCGGACAGTGACCATG 60.815 66.667 24.07 3.11 0.00 3.66
483 2867 0.744414 CCTCAAACATCCGCGGACAT 60.744 55.000 33.75 19.48 0.00 3.06
494 2878 2.613474 CGTAAATCCGACCCCTCAAACA 60.613 50.000 0.00 0.00 0.00 2.83
536 2927 0.955178 CCCTCACGCACGAGAGATAT 59.045 55.000 17.28 0.00 35.36 1.63
600 2991 0.469917 ATCCATCGGCCACTAACCAG 59.530 55.000 2.24 0.00 0.00 4.00
618 3009 4.707448 TGTGGCAAACCGACCAATATTAAT 59.293 37.500 0.00 0.00 37.79 1.40
631 3022 0.524862 CAGCTCTCATGTGGCAAACC 59.475 55.000 0.00 0.00 0.00 3.27
698 3093 9.135189 TGCTGCACAAAATTCCTATTTATAGAT 57.865 29.630 0.00 0.00 32.85 1.98
699 3094 8.518430 TGCTGCACAAAATTCCTATTTATAGA 57.482 30.769 0.00 0.00 32.85 1.98
753 3151 0.179018 GCAGGGCGGATCCAGTATTT 60.179 55.000 13.41 0.00 36.21 1.40
754 3152 1.344953 TGCAGGGCGGATCCAGTATT 61.345 55.000 13.41 0.00 36.21 1.89
775 3173 2.440539 TCAGAAGTTCAGAACGAGCC 57.559 50.000 7.68 0.00 36.23 4.70
801 3199 5.869888 CGGCATCACCTAATTAAGATCCTAC 59.130 44.000 0.00 0.00 35.61 3.18
808 3206 7.173218 ACAATCATACGGCATCACCTAATTAAG 59.827 37.037 0.00 0.00 35.61 1.85
809 3207 6.995686 ACAATCATACGGCATCACCTAATTAA 59.004 34.615 0.00 0.00 35.61 1.40
820 3218 6.882610 AATGTTCATACAATCATACGGCAT 57.117 33.333 0.00 0.00 37.91 4.40
827 3225 9.466497 AGTTTGGACTAATGTTCATACAATCAT 57.534 29.630 0.00 0.00 36.49 2.45
828 3226 8.862325 AGTTTGGACTAATGTTCATACAATCA 57.138 30.769 0.00 0.00 36.49 2.57
861 3259 6.682746 AGTGCGATTCCTGAATACAGTATAG 58.317 40.000 0.00 0.00 42.05 1.31
868 3266 5.122396 ACAGAAAAGTGCGATTCCTGAATAC 59.878 40.000 0.00 0.00 0.00 1.89
869 3267 5.245531 ACAGAAAAGTGCGATTCCTGAATA 58.754 37.500 0.00 0.00 0.00 1.75
870 3268 4.074970 ACAGAAAAGTGCGATTCCTGAAT 58.925 39.130 0.00 0.00 0.00 2.57
873 3271 2.160417 GGACAGAAAAGTGCGATTCCTG 59.840 50.000 0.00 0.00 0.00 3.86
874 3272 2.427506 GGACAGAAAAGTGCGATTCCT 58.572 47.619 0.00 0.00 0.00 3.36
885 3283 1.896660 GCAGGGCACGGACAGAAAA 60.897 57.895 0.00 0.00 0.00 2.29
890 3288 4.314440 GTGAGCAGGGCACGGACA 62.314 66.667 0.00 0.00 0.00 4.02
894 3292 3.129502 CATGGTGAGCAGGGCACG 61.130 66.667 0.00 0.00 37.13 5.34
904 3302 0.244450 GGACCGTAACGACATGGTGA 59.756 55.000 9.20 0.00 37.96 4.02
939 3344 1.276622 ACTGCGTTTAGGGTGAGGAT 58.723 50.000 0.00 0.00 0.00 3.24
957 3370 2.226674 GGCTTCCAGTCTTTGCACTAAC 59.773 50.000 0.00 0.00 0.00 2.34
966 3379 1.622811 CAGTCTGAGGCTTCCAGTCTT 59.377 52.381 0.00 0.00 24.78 3.01
968 3381 0.972883 ACAGTCTGAGGCTTCCAGTC 59.027 55.000 6.91 0.00 33.57 3.51
971 3384 3.464878 AGACAGTCTGAGGCTTCCA 57.535 52.632 6.91 0.00 0.00 3.53
993 3406 2.803030 AATGGAGTCTCATGCTTGCT 57.197 45.000 1.47 0.00 0.00 3.91
1011 3424 0.386352 CGACGGTGAGCGAACAGTAA 60.386 55.000 12.27 0.00 0.00 2.24
1012 3425 1.208358 CGACGGTGAGCGAACAGTA 59.792 57.895 12.27 0.00 0.00 2.74
1013 3426 2.050351 CGACGGTGAGCGAACAGT 60.050 61.111 12.27 0.00 0.00 3.55
1020 3433 3.973267 GAGCAGGACGACGGTGAGC 62.973 68.421 0.00 0.00 0.00 4.26
1024 3437 4.680537 AGGGAGCAGGACGACGGT 62.681 66.667 0.00 0.00 0.00 4.83
1030 3443 0.912006 AGGAGGAAAGGGAGCAGGAC 60.912 60.000 0.00 0.00 0.00 3.85
1042 3455 3.077556 GGCTGAGGCGAGGAGGAA 61.078 66.667 0.00 0.00 39.81 3.36
1108 3521 9.935682 GATCGAGCAATAAAATGTTCAGAATTA 57.064 29.630 0.00 0.00 31.60 1.40
1109 3522 7.641411 CGATCGAGCAATAAAATGTTCAGAATT 59.359 33.333 10.26 0.00 31.60 2.17
1110 3523 7.128331 CGATCGAGCAATAAAATGTTCAGAAT 58.872 34.615 10.26 0.00 31.60 2.40
1113 3526 5.674148 CACGATCGAGCAATAAAATGTTCAG 59.326 40.000 24.34 0.00 31.60 3.02
1119 3532 4.394920 ACAACCACGATCGAGCAATAAAAT 59.605 37.500 24.34 0.00 0.00 1.82
1123 3536 2.267426 CACAACCACGATCGAGCAATA 58.733 47.619 24.34 0.00 0.00 1.90
1131 3544 1.526887 CAGACACACACAACCACGATC 59.473 52.381 0.00 0.00 0.00 3.69
1138 3551 3.521560 TCAGAGTTCAGACACACACAAC 58.478 45.455 0.00 0.00 0.00 3.32
1139 3552 3.885724 TCAGAGTTCAGACACACACAA 57.114 42.857 0.00 0.00 0.00 3.33
1156 3569 1.264288 GAACGGTCAGCCTTTGTTCAG 59.736 52.381 0.00 0.00 38.93 3.02
1158 3571 0.591659 GGAACGGTCAGCCTTTGTTC 59.408 55.000 1.31 0.00 38.50 3.18
1159 3572 0.182775 AGGAACGGTCAGCCTTTGTT 59.817 50.000 1.31 0.00 0.00 2.83
1160 3573 0.535102 CAGGAACGGTCAGCCTTTGT 60.535 55.000 1.31 0.00 0.00 2.83
1161 3574 0.250295 TCAGGAACGGTCAGCCTTTG 60.250 55.000 1.31 0.00 0.00 2.77
1162 3575 0.472471 TTCAGGAACGGTCAGCCTTT 59.528 50.000 1.31 0.00 0.00 3.11
1163 3576 0.693049 ATTCAGGAACGGTCAGCCTT 59.307 50.000 1.31 0.00 0.00 4.35
1164 3577 0.036010 CATTCAGGAACGGTCAGCCT 60.036 55.000 1.31 0.00 0.00 4.58
1309 3722 1.600916 GCACCTGGTCCTGTTGGTC 60.601 63.158 0.00 0.00 34.23 4.02
1349 3762 4.636435 CGGGGCGAAGGTGTTGGT 62.636 66.667 0.00 0.00 0.00 3.67
1350 3763 4.636435 ACGGGGCGAAGGTGTTGG 62.636 66.667 0.00 0.00 0.00 3.77
1352 3765 4.675029 CGACGGGGCGAAGGTGTT 62.675 66.667 0.00 0.00 0.00 3.32
1381 3794 0.745845 ATGAAGAGTGGCATGCGGTC 60.746 55.000 12.44 8.01 0.00 4.79
1430 3847 0.448990 GCTGATCTGCAACGCATTCA 59.551 50.000 18.67 0.00 38.13 2.57
1457 3874 1.982395 TTCCGGTCCATGTCGCTCT 60.982 57.895 0.00 0.00 0.00 4.09
1643 4060 4.043100 TCCTCTCCTCCGACGGCA 62.043 66.667 9.66 0.00 0.00 5.69
1913 4331 1.294659 CCCTCTGAAACGAGTGCAGC 61.295 60.000 0.00 0.00 0.00 5.25
1914 4332 0.318441 TCCCTCTGAAACGAGTGCAG 59.682 55.000 0.00 0.00 0.00 4.41
1915 4333 0.033504 GTCCCTCTGAAACGAGTGCA 59.966 55.000 0.00 0.00 0.00 4.57
1916 4334 1.009389 CGTCCCTCTGAAACGAGTGC 61.009 60.000 0.00 0.00 38.65 4.40
1918 4336 1.965219 CCGTCCCTCTGAAACGAGT 59.035 57.895 8.05 0.00 38.65 4.18
1919 4337 1.446272 GCCGTCCCTCTGAAACGAG 60.446 63.158 8.05 0.00 38.65 4.18
1920 4338 2.154798 CTGCCGTCCCTCTGAAACGA 62.155 60.000 8.05 0.00 38.65 3.85
1921 4339 1.738099 CTGCCGTCCCTCTGAAACG 60.738 63.158 0.00 0.00 36.22 3.60
1922 4340 2.035442 GCTGCCGTCCCTCTGAAAC 61.035 63.158 0.00 0.00 0.00 2.78
1924 4342 4.069232 CGCTGCCGTCCCTCTGAA 62.069 66.667 0.00 0.00 0.00 3.02
1958 4388 6.127897 GCATCCACTAAGACTTGCAAAACTAT 60.128 38.462 0.00 0.00 0.00 2.12
1963 4393 3.754965 AGCATCCACTAAGACTTGCAAA 58.245 40.909 0.00 0.00 32.66 3.68
1966 4396 5.665381 GATAAGCATCCACTAAGACTTGC 57.335 43.478 0.00 0.00 0.00 4.01
1978 4409 5.177326 GTGAGATCTCATGGATAAGCATCC 58.823 45.833 27.51 7.00 41.83 3.51
1999 4430 8.707938 TTAACACAGATACAGATCTCAATGTG 57.292 34.615 15.96 15.96 40.68 3.21
2000 4431 9.725019 TTTTAACACAGATACAGATCTCAATGT 57.275 29.630 0.00 0.00 40.68 2.71
2034 4465 9.607988 TGAAGTGACATAACAGTTAGAGAAAAA 57.392 29.630 0.00 0.00 34.18 1.94
2035 4466 9.042008 GTGAAGTGACATAACAGTTAGAGAAAA 57.958 33.333 0.00 0.00 34.18 2.29
2036 4467 8.421784 AGTGAAGTGACATAACAGTTAGAGAAA 58.578 33.333 0.00 0.00 34.18 2.52
2037 4468 7.952671 AGTGAAGTGACATAACAGTTAGAGAA 58.047 34.615 0.00 0.00 34.18 2.87
2038 4469 7.526142 AGTGAAGTGACATAACAGTTAGAGA 57.474 36.000 0.00 0.00 34.18 3.10
2039 4470 9.692749 TTTAGTGAAGTGACATAACAGTTAGAG 57.307 33.333 0.00 0.00 34.18 2.43
2042 4473 9.826574 AGTTTTAGTGAAGTGACATAACAGTTA 57.173 29.630 0.00 0.00 34.18 2.24
2043 4474 8.732746 AGTTTTAGTGAAGTGACATAACAGTT 57.267 30.769 0.00 0.00 36.33 3.16
2044 4475 8.612619 CAAGTTTTAGTGAAGTGACATAACAGT 58.387 33.333 0.00 0.00 0.00 3.55
2045 4476 8.070171 CCAAGTTTTAGTGAAGTGACATAACAG 58.930 37.037 0.00 0.00 0.00 3.16
2046 4477 7.554835 ACCAAGTTTTAGTGAAGTGACATAACA 59.445 33.333 0.00 0.00 0.00 2.41
2047 4478 7.927048 ACCAAGTTTTAGTGAAGTGACATAAC 58.073 34.615 0.00 0.00 0.00 1.89
2048 4479 8.514330 AACCAAGTTTTAGTGAAGTGACATAA 57.486 30.769 0.00 0.00 0.00 1.90
2049 4480 9.616156 TTAACCAAGTTTTAGTGAAGTGACATA 57.384 29.630 0.00 0.00 0.00 2.29
2050 4481 8.514330 TTAACCAAGTTTTAGTGAAGTGACAT 57.486 30.769 0.00 0.00 0.00 3.06
2051 4482 7.925043 TTAACCAAGTTTTAGTGAAGTGACA 57.075 32.000 0.00 0.00 0.00 3.58
2052 4483 9.447040 GATTTAACCAAGTTTTAGTGAAGTGAC 57.553 33.333 0.00 0.00 0.00 3.67
2053 4484 9.403583 AGATTTAACCAAGTTTTAGTGAAGTGA 57.596 29.630 0.00 0.00 0.00 3.41
2054 4485 9.665264 GAGATTTAACCAAGTTTTAGTGAAGTG 57.335 33.333 0.00 0.00 0.00 3.16
2055 4486 9.403583 TGAGATTTAACCAAGTTTTAGTGAAGT 57.596 29.630 0.00 0.00 0.00 3.01
2056 4487 9.665264 GTGAGATTTAACCAAGTTTTAGTGAAG 57.335 33.333 0.00 0.00 0.00 3.02
2057 4488 9.403583 AGTGAGATTTAACCAAGTTTTAGTGAA 57.596 29.630 0.00 0.00 0.00 3.18
2058 4489 8.974060 AGTGAGATTTAACCAAGTTTTAGTGA 57.026 30.769 0.00 0.00 0.00 3.41
2059 4490 9.057089 AGAGTGAGATTTAACCAAGTTTTAGTG 57.943 33.333 0.00 0.00 0.00 2.74
2063 4494 9.057089 CAGTAGAGTGAGATTTAACCAAGTTTT 57.943 33.333 0.00 0.00 0.00 2.43
2064 4495 8.429641 TCAGTAGAGTGAGATTTAACCAAGTTT 58.570 33.333 0.00 0.00 0.00 2.66
2065 4496 7.963532 TCAGTAGAGTGAGATTTAACCAAGTT 58.036 34.615 0.00 0.00 0.00 2.66
2066 4497 7.451877 TCTCAGTAGAGTGAGATTTAACCAAGT 59.548 37.037 12.16 0.00 46.52 3.16
2067 4498 7.831753 TCTCAGTAGAGTGAGATTTAACCAAG 58.168 38.462 12.16 0.00 46.52 3.61
2068 4499 7.776618 TCTCAGTAGAGTGAGATTTAACCAA 57.223 36.000 12.16 0.00 46.52 3.67
2078 4509 4.036262 GTGGCTATGTCTCAGTAGAGTGAG 59.964 50.000 7.90 7.90 44.71 3.51
2079 4510 3.948473 GTGGCTATGTCTCAGTAGAGTGA 59.052 47.826 0.00 0.00 42.66 3.41
2080 4511 3.696548 TGTGGCTATGTCTCAGTAGAGTG 59.303 47.826 0.00 0.00 42.66 3.51
2081 4512 3.697045 GTGTGGCTATGTCTCAGTAGAGT 59.303 47.826 0.00 0.00 42.66 3.24
2082 4513 3.951037 AGTGTGGCTATGTCTCAGTAGAG 59.049 47.826 0.00 0.00 43.48 2.43
2083 4514 3.948473 GAGTGTGGCTATGTCTCAGTAGA 59.052 47.826 0.00 0.00 0.00 2.59
2084 4515 3.951037 AGAGTGTGGCTATGTCTCAGTAG 59.049 47.826 0.00 0.00 0.00 2.57
2085 4516 3.969553 AGAGTGTGGCTATGTCTCAGTA 58.030 45.455 0.00 0.00 0.00 2.74
2086 4517 2.813907 AGAGTGTGGCTATGTCTCAGT 58.186 47.619 0.00 0.00 0.00 3.41
2087 4518 3.883830 AAGAGTGTGGCTATGTCTCAG 57.116 47.619 0.00 0.00 0.00 3.35
2088 4519 3.578282 TGAAAGAGTGTGGCTATGTCTCA 59.422 43.478 0.00 0.00 0.00 3.27
2089 4520 3.929610 GTGAAAGAGTGTGGCTATGTCTC 59.070 47.826 0.00 0.00 0.00 3.36
2090 4521 3.580458 AGTGAAAGAGTGTGGCTATGTCT 59.420 43.478 0.00 0.00 0.00 3.41
2091 4522 3.931578 AGTGAAAGAGTGTGGCTATGTC 58.068 45.455 0.00 0.00 0.00 3.06
2092 4523 5.683876 ATAGTGAAAGAGTGTGGCTATGT 57.316 39.130 0.00 0.00 0.00 2.29
2093 4524 6.992063 AAATAGTGAAAGAGTGTGGCTATG 57.008 37.500 0.00 0.00 0.00 2.23
2094 4525 9.331282 GATAAAATAGTGAAAGAGTGTGGCTAT 57.669 33.333 0.00 0.00 0.00 2.97
2095 4526 8.540388 AGATAAAATAGTGAAAGAGTGTGGCTA 58.460 33.333 0.00 0.00 0.00 3.93
2096 4527 7.398024 AGATAAAATAGTGAAAGAGTGTGGCT 58.602 34.615 0.00 0.00 0.00 4.75
2097 4528 7.550906 AGAGATAAAATAGTGAAAGAGTGTGGC 59.449 37.037 0.00 0.00 0.00 5.01
2098 4529 9.092876 GAGAGATAAAATAGTGAAAGAGTGTGG 57.907 37.037 0.00 0.00 0.00 4.17
2099 4530 8.802856 CGAGAGATAAAATAGTGAAAGAGTGTG 58.197 37.037 0.00 0.00 0.00 3.82
2100 4531 7.489757 GCGAGAGATAAAATAGTGAAAGAGTGT 59.510 37.037 0.00 0.00 0.00 3.55
2101 4532 7.704472 AGCGAGAGATAAAATAGTGAAAGAGTG 59.296 37.037 0.00 0.00 0.00 3.51
2102 4533 7.777095 AGCGAGAGATAAAATAGTGAAAGAGT 58.223 34.615 0.00 0.00 0.00 3.24
2103 4534 8.641499 AAGCGAGAGATAAAATAGTGAAAGAG 57.359 34.615 0.00 0.00 0.00 2.85
2104 4535 9.737427 CTAAGCGAGAGATAAAATAGTGAAAGA 57.263 33.333 0.00 0.00 0.00 2.52
2105 4536 9.737427 TCTAAGCGAGAGATAAAATAGTGAAAG 57.263 33.333 0.00 0.00 0.00 2.62
2108 4539 9.900710 GAATCTAAGCGAGAGATAAAATAGTGA 57.099 33.333 0.00 0.00 37.70 3.41
2109 4540 9.134734 GGAATCTAAGCGAGAGATAAAATAGTG 57.865 37.037 0.00 0.00 37.70 2.74
2110 4541 8.024285 CGGAATCTAAGCGAGAGATAAAATAGT 58.976 37.037 0.00 0.00 37.70 2.12
2111 4542 8.237949 TCGGAATCTAAGCGAGAGATAAAATAG 58.762 37.037 0.00 0.00 37.70 1.73
2112 4543 8.107399 TCGGAATCTAAGCGAGAGATAAAATA 57.893 34.615 0.00 0.00 37.70 1.40
2113 4544 6.982852 TCGGAATCTAAGCGAGAGATAAAAT 58.017 36.000 0.00 0.00 37.70 1.82
2114 4545 6.387041 TCGGAATCTAAGCGAGAGATAAAA 57.613 37.500 0.00 0.00 37.70 1.52
2115 4546 6.387041 TTCGGAATCTAAGCGAGAGATAAA 57.613 37.500 0.00 0.00 37.70 1.40
2116 4547 6.387041 TTTCGGAATCTAAGCGAGAGATAA 57.613 37.500 0.00 0.00 37.70 1.75
2117 4548 5.563085 GCTTTCGGAATCTAAGCGAGAGATA 60.563 44.000 0.00 0.00 37.70 1.98
2118 4549 4.794655 GCTTTCGGAATCTAAGCGAGAGAT 60.795 45.833 0.00 0.00 37.70 2.75
2119 4550 3.489398 GCTTTCGGAATCTAAGCGAGAGA 60.489 47.826 0.00 0.00 37.70 3.10
2120 4551 2.792116 GCTTTCGGAATCTAAGCGAGAG 59.208 50.000 0.00 0.00 37.70 3.20
2121 4552 2.427453 AGCTTTCGGAATCTAAGCGAGA 59.573 45.455 6.52 0.00 46.67 4.04
2122 4553 2.792116 GAGCTTTCGGAATCTAAGCGAG 59.208 50.000 6.52 0.00 46.67 5.03
2123 4554 2.427453 AGAGCTTTCGGAATCTAAGCGA 59.573 45.455 6.52 0.00 46.67 4.93
2124 4555 2.792116 GAGAGCTTTCGGAATCTAAGCG 59.208 50.000 6.52 0.00 46.67 4.68
2125 4556 2.792116 CGAGAGCTTTCGGAATCTAAGC 59.208 50.000 18.35 4.38 43.47 3.09
2126 4557 4.294416 TCGAGAGCTTTCGGAATCTAAG 57.706 45.455 24.53 0.00 40.83 2.18
2127 4558 4.920640 ATCGAGAGCTTTCGGAATCTAA 57.079 40.909 24.53 5.67 40.83 2.10
2128 4559 4.820173 TGTATCGAGAGCTTTCGGAATCTA 59.180 41.667 24.53 6.39 40.83 1.98
2129 4560 3.632604 TGTATCGAGAGCTTTCGGAATCT 59.367 43.478 24.53 8.76 40.83 2.40
2130 4561 3.966154 TGTATCGAGAGCTTTCGGAATC 58.034 45.455 24.53 13.70 40.83 2.52
2131 4562 4.592485 ATGTATCGAGAGCTTTCGGAAT 57.408 40.909 24.53 14.87 40.83 3.01
2132 4563 4.112634 CAATGTATCGAGAGCTTTCGGAA 58.887 43.478 24.53 11.54 40.83 4.30
2133 4564 3.130516 ACAATGTATCGAGAGCTTTCGGA 59.869 43.478 24.53 12.86 40.83 4.55
2134 4565 3.448686 ACAATGTATCGAGAGCTTTCGG 58.551 45.455 24.53 10.44 40.83 4.30
2135 4566 5.456192 AAACAATGTATCGAGAGCTTTCG 57.544 39.130 19.89 19.89 41.79 3.46
2136 4567 5.500931 CGGAAACAATGTATCGAGAGCTTTC 60.501 44.000 0.00 0.00 0.00 2.62
2137 4568 4.330074 CGGAAACAATGTATCGAGAGCTTT 59.670 41.667 0.00 0.00 0.00 3.51
2138 4569 3.865745 CGGAAACAATGTATCGAGAGCTT 59.134 43.478 0.00 0.00 0.00 3.74
2139 4570 3.119101 ACGGAAACAATGTATCGAGAGCT 60.119 43.478 9.20 0.00 0.00 4.09
2140 4571 3.187700 ACGGAAACAATGTATCGAGAGC 58.812 45.455 9.20 0.00 0.00 4.09
2141 4572 4.862574 TGAACGGAAACAATGTATCGAGAG 59.137 41.667 9.20 0.00 0.00 3.20
2142 4573 4.811908 TGAACGGAAACAATGTATCGAGA 58.188 39.130 9.20 0.00 0.00 4.04
2143 4574 5.718649 ATGAACGGAAACAATGTATCGAG 57.281 39.130 9.20 0.00 0.00 4.04
2144 4575 5.220322 CGAATGAACGGAAACAATGTATCGA 60.220 40.000 9.20 0.00 0.00 3.59
2145 4576 4.955590 CGAATGAACGGAAACAATGTATCG 59.044 41.667 0.00 0.00 0.00 2.92
2146 4577 5.732647 CACGAATGAACGGAAACAATGTATC 59.267 40.000 0.00 0.00 37.61 2.24
2147 4578 5.391523 CCACGAATGAACGGAAACAATGTAT 60.392 40.000 0.00 0.00 37.61 2.29
2148 4579 4.083749 CCACGAATGAACGGAAACAATGTA 60.084 41.667 0.00 0.00 37.61 2.29
2149 4580 3.304391 CCACGAATGAACGGAAACAATGT 60.304 43.478 0.00 0.00 37.61 2.71
2150 4581 3.233578 CCACGAATGAACGGAAACAATG 58.766 45.455 0.00 0.00 37.61 2.82
2151 4582 2.882137 ACCACGAATGAACGGAAACAAT 59.118 40.909 0.00 0.00 37.61 2.71
2152 4583 2.290464 ACCACGAATGAACGGAAACAA 58.710 42.857 0.00 0.00 37.61 2.83
2153 4584 1.956297 ACCACGAATGAACGGAAACA 58.044 45.000 0.00 0.00 37.61 2.83
2154 4585 3.495753 AGTTACCACGAATGAACGGAAAC 59.504 43.478 0.00 0.00 37.61 2.78
2155 4586 3.731089 AGTTACCACGAATGAACGGAAA 58.269 40.909 0.00 0.00 37.61 3.13
2156 4587 3.243805 TGAGTTACCACGAATGAACGGAA 60.244 43.478 0.00 0.00 37.61 4.30
2157 4588 2.296752 TGAGTTACCACGAATGAACGGA 59.703 45.455 0.00 0.00 37.61 4.69
2158 4589 2.679450 TGAGTTACCACGAATGAACGG 58.321 47.619 0.00 0.00 37.61 4.44
2159 4590 5.575606 ACTTATGAGTTACCACGAATGAACG 59.424 40.000 0.00 0.00 34.14 3.95
2160 4591 6.963049 ACTTATGAGTTACCACGAATGAAC 57.037 37.500 0.00 0.00 29.87 3.18
2161 4592 9.661563 AAATACTTATGAGTTACCACGAATGAA 57.338 29.630 0.00 0.00 37.33 2.57
2162 4593 9.661563 AAAATACTTATGAGTTACCACGAATGA 57.338 29.630 0.00 0.00 37.33 2.57
2203 4634 9.888878 CGATGCTTCATATTGAGTCAATAAAAT 57.111 29.630 25.41 10.97 39.34 1.82
2204 4635 9.108284 TCGATGCTTCATATTGAGTCAATAAAA 57.892 29.630 25.41 20.48 39.34 1.52
2205 4636 8.661352 TCGATGCTTCATATTGAGTCAATAAA 57.339 30.769 25.41 16.52 39.34 1.40
2206 4637 8.143835 TCTCGATGCTTCATATTGAGTCAATAA 58.856 33.333 25.41 13.02 39.34 1.40
2207 4638 7.661040 TCTCGATGCTTCATATTGAGTCAATA 58.339 34.615 24.22 24.22 40.04 1.90
2208 4639 6.519382 TCTCGATGCTTCATATTGAGTCAAT 58.481 36.000 21.57 21.57 37.35 2.57
2209 4640 5.906073 TCTCGATGCTTCATATTGAGTCAA 58.094 37.500 8.27 8.27 37.35 3.18
2210 4641 5.508657 CCTCTCGATGCTTCATATTGAGTCA 60.509 44.000 0.08 0.00 37.35 3.41
2211 4642 4.922692 CCTCTCGATGCTTCATATTGAGTC 59.077 45.833 0.08 0.00 37.35 3.36
2212 4643 4.586421 TCCTCTCGATGCTTCATATTGAGT 59.414 41.667 0.08 0.00 37.35 3.41
2213 4644 4.922692 GTCCTCTCGATGCTTCATATTGAG 59.077 45.833 0.08 0.00 37.39 3.02
2214 4645 4.342092 TGTCCTCTCGATGCTTCATATTGA 59.658 41.667 0.08 0.00 0.00 2.57
2215 4646 4.447054 GTGTCCTCTCGATGCTTCATATTG 59.553 45.833 0.08 0.00 0.00 1.90
2216 4647 4.100035 TGTGTCCTCTCGATGCTTCATATT 59.900 41.667 0.08 0.00 0.00 1.28
2217 4648 3.638627 TGTGTCCTCTCGATGCTTCATAT 59.361 43.478 0.08 0.00 0.00 1.78
2218 4649 3.023832 TGTGTCCTCTCGATGCTTCATA 58.976 45.455 0.08 0.00 0.00 2.15
2219 4650 1.827344 TGTGTCCTCTCGATGCTTCAT 59.173 47.619 0.08 0.00 0.00 2.57
2220 4651 1.067565 GTGTGTCCTCTCGATGCTTCA 60.068 52.381 0.08 0.00 0.00 3.02
2221 4652 1.634702 GTGTGTCCTCTCGATGCTTC 58.365 55.000 0.00 0.00 0.00 3.86
2222 4653 0.247736 GGTGTGTCCTCTCGATGCTT 59.752 55.000 0.00 0.00 0.00 3.91
2223 4654 0.613292 AGGTGTGTCCTCTCGATGCT 60.613 55.000 0.00 0.00 44.42 3.79
2224 4655 1.103803 TAGGTGTGTCCTCTCGATGC 58.896 55.000 0.00 0.00 44.42 3.91
2225 4656 2.098280 CAGTAGGTGTGTCCTCTCGATG 59.902 54.545 0.00 0.00 44.42 3.84
2226 4657 2.370349 CAGTAGGTGTGTCCTCTCGAT 58.630 52.381 0.00 0.00 44.42 3.59
2227 4658 1.822506 CAGTAGGTGTGTCCTCTCGA 58.177 55.000 0.00 0.00 44.42 4.04
2228 4659 0.171455 GCAGTAGGTGTGTCCTCTCG 59.829 60.000 0.00 0.00 44.42 4.04
2229 4660 1.257743 TGCAGTAGGTGTGTCCTCTC 58.742 55.000 0.00 0.00 44.42 3.20
2230 4661 1.944177 ATGCAGTAGGTGTGTCCTCT 58.056 50.000 0.00 0.00 44.42 3.69
2231 4662 2.761208 AGTATGCAGTAGGTGTGTCCTC 59.239 50.000 0.00 0.00 44.42 3.71
2233 4664 2.159085 GGAGTATGCAGTAGGTGTGTCC 60.159 54.545 0.00 0.00 0.00 4.02
2234 4665 2.159085 GGGAGTATGCAGTAGGTGTGTC 60.159 54.545 0.00 0.00 0.00 3.67
2235 4666 1.831736 GGGAGTATGCAGTAGGTGTGT 59.168 52.381 0.00 0.00 0.00 3.72
2236 4667 2.111384 AGGGAGTATGCAGTAGGTGTG 58.889 52.381 0.00 0.00 0.00 3.82
2237 4668 2.552093 AGGGAGTATGCAGTAGGTGT 57.448 50.000 0.00 0.00 0.00 4.16
2238 4669 3.055094 ACAAAGGGAGTATGCAGTAGGTG 60.055 47.826 0.00 0.00 0.00 4.00
2239 4670 3.182152 ACAAAGGGAGTATGCAGTAGGT 58.818 45.455 0.00 0.00 0.00 3.08
2240 4671 3.914426 ACAAAGGGAGTATGCAGTAGG 57.086 47.619 0.00 0.00 0.00 3.18
2241 4672 5.705441 TGAAAACAAAGGGAGTATGCAGTAG 59.295 40.000 0.00 0.00 0.00 2.57
2242 4673 5.626142 TGAAAACAAAGGGAGTATGCAGTA 58.374 37.500 0.00 0.00 0.00 2.74
2243 4674 4.469657 TGAAAACAAAGGGAGTATGCAGT 58.530 39.130 0.00 0.00 0.00 4.40
2244 4675 5.452078 TTGAAAACAAAGGGAGTATGCAG 57.548 39.130 0.00 0.00 0.00 4.41
2245 4676 5.860941 TTTGAAAACAAAGGGAGTATGCA 57.139 34.783 0.00 0.00 0.00 3.96
2250 4681 9.588096 AGTCTTATATTTGAAAACAAAGGGAGT 57.412 29.630 0.00 0.00 0.00 3.85
2332 4763 3.244181 TGCATTCTGGCTGCGATCTATAA 60.244 43.478 0.00 0.00 42.62 0.98
2334 4765 1.071228 TGCATTCTGGCTGCGATCTAT 59.929 47.619 0.00 0.00 42.62 1.98
2344 4775 1.266175 CCGAGATGAATGCATTCTGGC 59.734 52.381 33.23 23.28 37.67 4.85
2348 4779 0.595095 GCCCCGAGATGAATGCATTC 59.405 55.000 28.83 28.83 34.11 2.67
2366 4797 3.304559 CGTAGTTGTCATGTAAGCTCTGC 59.695 47.826 0.00 0.00 0.00 4.26
2368 4799 4.785511 ACGTAGTTGTCATGTAAGCTCT 57.214 40.909 0.00 0.00 37.78 4.09
2436 4867 1.929836 GTGGAGCTTAAGCATGACTCG 59.070 52.381 28.39 0.00 45.16 4.18
2465 4896 2.693069 CATGATATGGAGTCGAAGGCC 58.307 52.381 0.00 0.00 0.00 5.19
2519 4950 4.753516 TTCCAGGAAGCGATTCTCATAA 57.246 40.909 13.83 0.92 0.00 1.90
2521 4952 3.474600 CATTCCAGGAAGCGATTCTCAT 58.525 45.455 13.83 0.00 0.00 2.90
2524 4955 1.839994 TCCATTCCAGGAAGCGATTCT 59.160 47.619 13.83 0.00 33.93 2.40
2564 4995 2.658707 GAGAACACGCGTGCTGGAC 61.659 63.158 37.35 22.67 27.58 4.02
2616 5059 2.583441 CCTGACGGAGCCCTTGTCA 61.583 63.158 0.00 0.00 40.12 3.58
2636 5079 0.754957 AGCTGCGAGGCATAGAGTCT 60.755 55.000 0.00 0.00 38.13 3.24
2734 5178 4.838152 CCAGGATGTGCCGTCGGG 62.838 72.222 14.38 0.00 43.43 5.14
2770 5214 1.546834 GTAGAAGACCATGACGTCGC 58.453 55.000 11.62 0.00 37.85 5.19
2797 5241 1.202256 CCACAACGATGTCGCTAGCTA 60.202 52.381 13.93 0.00 44.43 3.32
2802 5246 0.249699 TTGACCACAACGATGTCGCT 60.250 50.000 1.77 0.00 44.43 4.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.