Multiple sequence alignment - TraesCS2D01G162500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G162500 chr2D 100.000 3178 0 0 1 3178 106959751 106962928 0.000000e+00 5869.0
1 TraesCS2D01G162500 chr2B 92.433 1652 70 20 1 1634 157264524 157266138 0.000000e+00 2307.0
2 TraesCS2D01G162500 chr2B 92.000 625 30 13 1646 2262 157266121 157266733 0.000000e+00 859.0
3 TraesCS2D01G162500 chr2B 85.948 427 52 6 2247 2673 157266833 157267251 1.740000e-122 449.0
4 TraesCS2D01G162500 chr2B 84.789 355 43 6 2830 3178 789532739 789532390 2.350000e-91 346.0
5 TraesCS2D01G162500 chr2B 84.013 319 38 9 2472 2787 157268283 157268591 8.620000e-76 294.0
6 TraesCS2D01G162500 chr2B 89.922 129 12 1 2659 2787 157267263 157267390 7.050000e-37 165.0
7 TraesCS2D01G162500 chr2A 92.411 1344 58 20 72 1405 103238652 103239961 0.000000e+00 1877.0
8 TraesCS2D01G162500 chr2A 91.496 682 36 13 1646 2310 103240136 103240812 0.000000e+00 918.0
9 TraesCS2D01G162500 chr2A 96.354 192 4 1 1443 1634 103239965 103240153 2.380000e-81 313.0
10 TraesCS2D01G162500 chr2A 85.660 265 36 2 2369 2633 103242769 103243031 8.680000e-71 278.0
11 TraesCS2D01G162500 chr2A 88.757 169 18 1 2620 2787 103348429 103348597 4.160000e-49 206.0
12 TraesCS2D01G162500 chr1D 88.073 327 33 2 2858 3178 246075254 246074928 1.790000e-102 383.0
13 TraesCS2D01G162500 chr1D 86.687 323 35 7 2861 3178 211629807 211630126 5.040000e-93 351.0
14 TraesCS2D01G162500 chr7D 87.688 333 33 4 2848 3174 87219285 87219615 6.430000e-102 381.0
15 TraesCS2D01G162500 chr3D 87.888 322 31 4 2860 3174 584114860 584115180 3.870000e-99 372.0
16 TraesCS2D01G162500 chr4D 87.227 321 34 3 2859 3173 474919876 474919557 3.010000e-95 359.0
17 TraesCS2D01G162500 chr6D 86.810 326 35 4 2860 3178 400092376 400092052 1.080000e-94 357.0
18 TraesCS2D01G162500 chr3A 85.070 355 43 7 2833 3178 729318590 729318943 1.400000e-93 353.0
19 TraesCS2D01G162500 chr7A 85.886 333 35 7 2854 3178 88429519 88429847 8.440000e-91 344.0
20 TraesCS2D01G162500 chr5A 92.500 40 2 1 2716 2755 344325836 344325798 4.430000e-04 56.5
21 TraesCS2D01G162500 chr5D 96.875 32 1 0 2717 2748 499294925 499294894 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G162500 chr2D 106959751 106962928 3177 False 5869.0 5869 100.00000 1 3178 1 chr2D.!!$F1 3177
1 TraesCS2D01G162500 chr2B 157264524 157268591 4067 False 814.8 2307 88.86320 1 2787 5 chr2B.!!$F1 2786
2 TraesCS2D01G162500 chr2A 103238652 103243031 4379 False 846.5 1877 91.48025 72 2633 4 chr2A.!!$F2 2561

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
744 760 0.316841 CCTGCCCTTATCTCTCTCGC 59.683 60.0 0.0 0.0 0.0 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2593 4690 0.339859 AGTGGAGGCTACATGAGGGA 59.66 55.0 0.94 0.0 0.0 4.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.727726 CCACCAATCCACTTTGAAAACC 58.272 45.455 0.00 0.00 0.00 3.27
25 26 3.317993 ACCAATCCACTTTGAAAACCTCG 59.682 43.478 0.00 0.00 0.00 4.63
48 49 5.050769 CGATGTCATAAATGCACCTACTGTC 60.051 44.000 0.00 0.00 0.00 3.51
203 208 2.527487 GCATTGACAATTCGACGCAATC 59.473 45.455 0.00 0.00 0.00 2.67
216 221 3.570559 GACGCAATCTATCTACTCCTGC 58.429 50.000 0.00 0.00 0.00 4.85
217 222 2.959030 ACGCAATCTATCTACTCCTGCA 59.041 45.455 0.00 0.00 0.00 4.41
218 223 3.005261 ACGCAATCTATCTACTCCTGCAG 59.995 47.826 6.78 6.78 0.00 4.41
241 246 7.579726 CAGTTAGTTGATCAGGAGAAAACAAG 58.420 38.462 0.00 0.00 30.74 3.16
306 311 0.317160 ATGTTCTTGTGCGGACTCGA 59.683 50.000 8.99 1.48 39.00 4.04
377 382 4.513198 TGCCAGTTAGTGCAAATTAACC 57.487 40.909 11.34 1.49 33.87 2.85
394 399 5.554822 TTAACCCGCATCAACTTGATTAC 57.445 39.130 1.17 0.00 34.28 1.89
475 490 2.818169 GCAGTCCCAGTGTCCACCA 61.818 63.158 0.00 0.00 0.00 4.17
476 491 1.071471 CAGTCCCAGTGTCCACCAC 59.929 63.158 0.00 0.00 44.89 4.16
477 492 2.147387 AGTCCCAGTGTCCACCACC 61.147 63.158 0.00 0.00 45.74 4.61
478 493 2.040359 TCCCAGTGTCCACCACCA 60.040 61.111 0.00 0.00 45.74 4.17
479 494 2.146724 TCCCAGTGTCCACCACCAG 61.147 63.158 0.00 0.00 45.74 4.00
480 495 2.281761 CCAGTGTCCACCACCAGC 60.282 66.667 0.00 0.00 45.74 4.85
532 547 2.709475 CTGCCTGTTTATCCGCGC 59.291 61.111 0.00 0.00 0.00 6.86
621 637 4.776349 AGGATATAGACGCAGATCGAGAT 58.224 43.478 0.00 0.00 41.67 2.75
744 760 0.316841 CCTGCCCTTATCTCTCTCGC 59.683 60.000 0.00 0.00 0.00 5.03
933 952 2.049433 AGGAACGAACGTCAGCGG 60.049 61.111 9.65 0.00 43.45 5.52
998 1017 2.358003 GCACTTGCTGCTCGGAGT 60.358 61.111 6.90 0.00 43.33 3.85
999 1018 2.386660 GCACTTGCTGCTCGGAGTC 61.387 63.158 6.90 0.00 43.33 3.36
1000 1019 2.091112 CACTTGCTGCTCGGAGTCG 61.091 63.158 6.90 0.00 37.82 4.18
1203 1225 1.675641 GCCGCTTGGAGGTGTGAAT 60.676 57.895 0.00 0.00 33.02 2.57
1207 1229 2.422597 CGCTTGGAGGTGTGAATTGTA 58.577 47.619 0.00 0.00 0.00 2.41
1210 1232 3.063997 GCTTGGAGGTGTGAATTGTATCG 59.936 47.826 0.00 0.00 0.00 2.92
1258 1280 0.320247 GGAGCTACAGGATGATGGCG 60.320 60.000 0.00 0.00 39.69 5.69
1276 1298 4.699522 GTGGAGGCTCCGGCGTTT 62.700 66.667 27.58 0.00 40.17 3.60
1291 1313 2.125673 TTTCGCGGTGCTAGAGGC 60.126 61.111 6.13 0.00 42.22 4.70
1360 1382 2.446435 GGTTGGCTGGCTTGAGATTTA 58.554 47.619 2.00 0.00 0.00 1.40
1361 1383 2.164422 GGTTGGCTGGCTTGAGATTTAC 59.836 50.000 2.00 0.00 0.00 2.01
1362 1384 1.737838 TGGCTGGCTTGAGATTTACG 58.262 50.000 2.00 0.00 0.00 3.18
1363 1385 1.017387 GGCTGGCTTGAGATTTACGG 58.983 55.000 0.00 0.00 0.00 4.02
1364 1386 1.679032 GGCTGGCTTGAGATTTACGGT 60.679 52.381 0.00 0.00 0.00 4.83
1425 1452 6.618287 TCTCGGGCTGAATATTTTTGTATG 57.382 37.500 0.00 0.00 0.00 2.39
1550 1586 2.380084 TGTCCAACTAAGTCCGCATC 57.620 50.000 0.00 0.00 0.00 3.91
1563 1599 8.258708 ACTAAGTCCGCATCTTTTTAGTAATCT 58.741 33.333 0.00 0.00 31.61 2.40
1564 1600 6.910536 AGTCCGCATCTTTTTAGTAATCTG 57.089 37.500 0.00 0.00 0.00 2.90
1565 1601 6.640518 AGTCCGCATCTTTTTAGTAATCTGA 58.359 36.000 0.00 0.00 0.00 3.27
1634 1670 7.406553 TGAGCGCAACATAATTGTAGTTTATC 58.593 34.615 11.47 0.00 34.06 1.75
1635 1671 7.279981 TGAGCGCAACATAATTGTAGTTTATCT 59.720 33.333 11.47 0.00 34.06 1.98
1636 1672 7.985476 AGCGCAACATAATTGTAGTTTATCTT 58.015 30.769 11.47 0.00 34.06 2.40
1637 1673 8.458843 AGCGCAACATAATTGTAGTTTATCTTT 58.541 29.630 11.47 0.00 34.06 2.52
1638 1674 9.072294 GCGCAACATAATTGTAGTTTATCTTTT 57.928 29.630 0.30 0.00 34.06 2.27
1741 1777 6.879458 ACCAAACCATATTCAGAGAACTGTAC 59.121 38.462 0.00 0.00 43.81 2.90
1744 1780 9.823647 CAAACCATATTCAGAGAACTGTACTAT 57.176 33.333 0.00 0.00 43.81 2.12
1745 1781 9.823647 AAACCATATTCAGAGAACTGTACTATG 57.176 33.333 0.00 0.00 43.81 2.23
1756 1804 5.995897 AGAACTGTACTATGTTTGGGTTCAC 59.004 40.000 0.00 0.00 35.65 3.18
1762 1810 4.328536 ACTATGTTTGGGTTCACGCAATA 58.671 39.130 9.96 4.03 45.97 1.90
1768 1816 3.620427 TGGGTTCACGCAATATACTGT 57.380 42.857 0.00 0.00 35.80 3.55
1773 1821 3.188159 TCACGCAATATACTGTTCCCC 57.812 47.619 0.00 0.00 0.00 4.81
1774 1822 2.502130 TCACGCAATATACTGTTCCCCA 59.498 45.455 0.00 0.00 0.00 4.96
1775 1823 3.135712 TCACGCAATATACTGTTCCCCAT 59.864 43.478 0.00 0.00 0.00 4.00
1782 1830 7.040755 CGCAATATACTGTTCCCCATATCAAAA 60.041 37.037 0.00 0.00 0.00 2.44
1841 1897 4.583907 TGAAACAGGTCAAAATGATGCAGA 59.416 37.500 0.00 0.00 0.00 4.26
1942 1998 0.804933 GCCCTAACGATCGTCACACC 60.805 60.000 22.98 6.81 0.00 4.16
1981 2037 3.326836 TGATCGTGCCATGTCAAAGTA 57.673 42.857 0.00 0.00 0.00 2.24
2140 2198 4.997395 AGGTTACTGTAAGATTGTGTGCTG 59.003 41.667 0.00 0.00 37.43 4.41
2181 2239 6.012745 AGAAGTCCAATGCTTTTATCCAGTT 58.987 36.000 0.00 0.00 0.00 3.16
2281 2456 6.262601 GTTTTCTCCTGACAAAAATCGACAA 58.737 36.000 0.00 0.00 0.00 3.18
2287 2462 6.568869 TCCTGACAAAAATCGACAAAACATT 58.431 32.000 0.00 0.00 0.00 2.71
2316 4085 5.888982 AATACAGGAACGATAGAATGGGT 57.111 39.130 0.00 0.00 41.38 4.51
2320 4089 4.899457 ACAGGAACGATAGAATGGGTGATA 59.101 41.667 0.00 0.00 41.38 2.15
2335 4432 5.942961 TGGGTGATACTAAAACACTTTGGA 58.057 37.500 0.00 0.00 35.28 3.53
2349 4446 4.098807 ACACTTTGGATGTGTTTGGTTACC 59.901 41.667 0.00 0.00 45.11 2.85
2351 4448 4.340950 ACTTTGGATGTGTTTGGTTACCTG 59.659 41.667 2.07 0.00 0.00 4.00
2353 4450 2.235016 GGATGTGTTTGGTTACCTGCA 58.765 47.619 2.07 0.00 0.00 4.41
2359 4456 4.263727 TGTGTTTGGTTACCTGCATCCTAT 60.264 41.667 2.07 0.00 0.00 2.57
2362 4459 5.193679 GTTTGGTTACCTGCATCCTATCTT 58.806 41.667 2.07 0.00 0.00 2.40
2366 4463 4.199310 GTTACCTGCATCCTATCTTTGCA 58.801 43.478 0.00 0.00 43.63 4.08
2409 4506 2.031120 GCTATTTGGTTGCATAGGCCA 58.969 47.619 5.01 0.00 40.13 5.36
2410 4507 2.629617 GCTATTTGGTTGCATAGGCCAT 59.370 45.455 5.01 0.00 40.13 4.40
2436 4533 3.751518 AGAAACATACCCGCAAGAAACT 58.248 40.909 0.00 0.00 43.02 2.66
2459 4556 1.531602 GCACCCCTCAAACAGGCTT 60.532 57.895 0.00 0.00 41.80 4.35
2478 4575 4.222114 GCTTTGGAGAAACACTCAAATCG 58.778 43.478 0.00 0.00 46.54 3.34
2482 4579 7.573096 GCTTTGGAGAAACACTCAAATCGATTA 60.573 37.037 11.83 0.00 46.54 1.75
2484 4581 7.921786 TGGAGAAACACTCAAATCGATTATT 57.078 32.000 11.83 0.00 46.54 1.40
2487 4584 8.450964 GGAGAAACACTCAAATCGATTATTTCA 58.549 33.333 11.83 0.00 46.54 2.69
2490 4587 8.826546 AAACACTCAAATCGATTATTTCATCG 57.173 30.769 11.83 0.00 46.24 3.84
2501 4598 5.163824 CGATTATTTCATCGTATGCATGCCT 60.164 40.000 16.68 8.18 41.03 4.75
2517 4614 4.741235 GCATGCCTGGATCAATGCAATTTA 60.741 41.667 6.36 0.00 37.27 1.40
2520 4617 4.114794 GCCTGGATCAATGCAATTTACAC 58.885 43.478 0.00 0.00 31.22 2.90
2523 4620 6.498304 CCTGGATCAATGCAATTTACACTAC 58.502 40.000 0.00 0.00 31.22 2.73
2526 4623 6.883756 TGGATCAATGCAATTTACACTACAGA 59.116 34.615 0.00 0.00 31.22 3.41
2532 4629 8.506437 CAATGCAATTTACACTACAGAAAGAGA 58.494 33.333 0.00 0.00 31.22 3.10
2537 4634 6.706055 TTTACACTACAGAAAGAGATTGCG 57.294 37.500 0.00 0.00 0.00 4.85
2543 4640 1.470098 CAGAAAGAGATTGCGGGTTGG 59.530 52.381 0.00 0.00 0.00 3.77
2551 4648 2.632512 AGATTGCGGGTTGGAATTTTGT 59.367 40.909 0.00 0.00 38.92 2.83
2558 4655 2.224744 GGGTTGGAATTTTGTGGGCAAT 60.225 45.455 0.00 0.00 34.18 3.56
2563 4660 4.133078 TGGAATTTTGTGGGCAATCAAAC 58.867 39.130 0.00 0.00 34.05 2.93
2566 4663 5.106594 GGAATTTTGTGGGCAATCAAACATC 60.107 40.000 0.00 0.00 34.05 3.06
2567 4664 4.412796 TTTTGTGGGCAATCAAACATCA 57.587 36.364 0.00 0.00 34.05 3.07
2569 4666 3.596310 TGTGGGCAATCAAACATCATG 57.404 42.857 0.00 0.00 0.00 3.07
2570 4667 2.273557 GTGGGCAATCAAACATCATGC 58.726 47.619 0.00 0.00 36.31 4.06
2571 4668 1.900486 TGGGCAATCAAACATCATGCA 59.100 42.857 0.00 0.00 38.73 3.96
2573 4670 2.166870 GGGCAATCAAACATCATGCAGA 59.833 45.455 0.00 0.00 38.73 4.26
2574 4671 3.368635 GGGCAATCAAACATCATGCAGAA 60.369 43.478 0.00 0.00 38.73 3.02
2575 4672 3.615496 GGCAATCAAACATCATGCAGAAC 59.385 43.478 0.00 0.00 38.73 3.01
2576 4673 4.239304 GCAATCAAACATCATGCAGAACA 58.761 39.130 0.00 0.00 37.00 3.18
2577 4674 4.868171 GCAATCAAACATCATGCAGAACAT 59.132 37.500 0.00 0.00 40.66 2.71
2600 4697 3.244491 GCTCAGAGCATACATTCCCTCAT 60.244 47.826 18.17 0.00 41.89 2.90
2623 4720 4.106925 CTCCACTGGGCCAGGCTC 62.107 72.222 35.34 8.27 35.51 4.70
2635 4732 1.237285 CCAGGCTCTTGGGAAACGTG 61.237 60.000 0.00 0.00 34.46 4.49
2677 4774 3.611517 GCACGATGCATGTATTTGTCTC 58.388 45.455 2.46 0.00 44.26 3.36
2758 4881 2.438614 AGGAGTGCTCGCTCGCTA 60.439 61.111 4.58 0.00 36.41 4.26
2774 4897 0.030908 GCTAGCGCACGTCCTATTCT 59.969 55.000 11.47 0.00 35.78 2.40
2781 4904 3.123804 CGCACGTCCTATTCTGCTATTT 58.876 45.455 0.00 0.00 0.00 1.40
2787 4910 7.798982 GCACGTCCTATTCTGCTATTTATTTTC 59.201 37.037 0.00 0.00 0.00 2.29
2788 4911 8.826710 CACGTCCTATTCTGCTATTTATTTTCA 58.173 33.333 0.00 0.00 0.00 2.69
2796 4919 9.860898 ATTCTGCTATTTATTTTCAGTTGTTCC 57.139 29.630 0.00 0.00 0.00 3.62
2797 4920 8.635765 TCTGCTATTTATTTTCAGTTGTTCCT 57.364 30.769 0.00 0.00 0.00 3.36
2798 4921 8.514594 TCTGCTATTTATTTTCAGTTGTTCCTG 58.485 33.333 0.00 0.00 0.00 3.86
2799 4922 7.090173 TGCTATTTATTTTCAGTTGTTCCTGC 58.910 34.615 0.00 0.00 32.32 4.85
2800 4923 7.090173 GCTATTTATTTTCAGTTGTTCCTGCA 58.910 34.615 0.00 0.00 32.32 4.41
2801 4924 7.062255 GCTATTTATTTTCAGTTGTTCCTGCAC 59.938 37.037 0.00 0.00 32.32 4.57
2802 4925 5.843673 TTATTTTCAGTTGTTCCTGCACA 57.156 34.783 0.00 0.00 32.32 4.57
2803 4926 3.502191 TTTTCAGTTGTTCCTGCACAC 57.498 42.857 0.00 0.00 32.32 3.82
2804 4927 1.013596 TTCAGTTGTTCCTGCACACG 58.986 50.000 0.00 0.00 32.32 4.49
2809 5100 3.249799 CAGTTGTTCCTGCACACGAATAA 59.750 43.478 0.00 0.00 0.00 1.40
2812 5103 5.351465 AGTTGTTCCTGCACACGAATAATAG 59.649 40.000 0.00 0.00 0.00 1.73
2816 5107 4.439057 TCCTGCACACGAATAATAGGTTC 58.561 43.478 0.00 0.00 0.00 3.62
2819 5110 5.277490 CCTGCACACGAATAATAGGTTCATG 60.277 44.000 0.00 0.00 0.00 3.07
2821 5112 4.574828 GCACACGAATAATAGGTTCATGGT 59.425 41.667 0.00 0.00 0.00 3.55
2823 5114 6.404293 GCACACGAATAATAGGTTCATGGTTT 60.404 38.462 0.00 0.00 0.00 3.27
2829 5120 7.910162 CGAATAATAGGTTCATGGTTTCTTGTG 59.090 37.037 0.00 0.00 0.00 3.33
2830 5121 8.877864 AATAATAGGTTCATGGTTTCTTGTGA 57.122 30.769 0.00 0.00 0.00 3.58
2831 5122 6.575162 AATAGGTTCATGGTTTCTTGTGAC 57.425 37.500 0.00 0.00 0.00 3.67
2832 5123 2.878406 AGGTTCATGGTTTCTTGTGACG 59.122 45.455 0.00 0.00 0.00 4.35
2833 5124 2.031157 GGTTCATGGTTTCTTGTGACGG 60.031 50.000 0.00 0.00 0.00 4.79
2834 5125 2.616842 GTTCATGGTTTCTTGTGACGGT 59.383 45.455 0.00 0.00 0.00 4.83
2836 5127 3.283751 TCATGGTTTCTTGTGACGGTTT 58.716 40.909 0.00 0.00 0.00 3.27
2837 5128 3.314080 TCATGGTTTCTTGTGACGGTTTC 59.686 43.478 0.00 0.00 0.00 2.78
2838 5129 2.993937 TGGTTTCTTGTGACGGTTTCT 58.006 42.857 0.00 0.00 0.00 2.52
2839 5130 2.940410 TGGTTTCTTGTGACGGTTTCTC 59.060 45.455 0.00 0.00 0.00 2.87
2840 5131 2.033151 GGTTTCTTGTGACGGTTTCTCG 60.033 50.000 0.00 0.00 0.00 4.04
2841 5132 2.589798 TTCTTGTGACGGTTTCTCGT 57.410 45.000 0.00 0.00 46.83 4.18
2842 5133 1.847818 TCTTGTGACGGTTTCTCGTG 58.152 50.000 0.00 0.00 43.96 4.35
2843 5134 0.232303 CTTGTGACGGTTTCTCGTGC 59.768 55.000 0.00 0.00 43.96 5.34
2844 5135 1.155424 TTGTGACGGTTTCTCGTGCC 61.155 55.000 0.00 0.00 43.96 5.01
2845 5136 1.593209 GTGACGGTTTCTCGTGCCA 60.593 57.895 0.00 0.00 43.96 4.92
2846 5137 1.593209 TGACGGTTTCTCGTGCCAC 60.593 57.895 0.00 0.00 43.96 5.01
2848 5139 1.557443 GACGGTTTCTCGTGCCACTG 61.557 60.000 0.00 0.00 43.96 3.66
2849 5140 1.594293 CGGTTTCTCGTGCCACTGT 60.594 57.895 0.00 0.00 0.00 3.55
2851 5142 1.557443 GGTTTCTCGTGCCACTGTCG 61.557 60.000 0.00 0.00 0.00 4.35
2853 5144 0.596600 TTTCTCGTGCCACTGTCGTC 60.597 55.000 0.00 0.00 0.00 4.20
2854 5145 2.726850 TTCTCGTGCCACTGTCGTCG 62.727 60.000 0.00 0.00 0.00 5.12
2855 5146 3.538028 CTCGTGCCACTGTCGTCGT 62.538 63.158 0.00 0.00 0.00 4.34
2857 5148 2.927618 CGTGCCACTGTCGTCGTTG 61.928 63.158 0.00 0.00 0.00 4.10
2858 5149 2.964925 TGCCACTGTCGTCGTTGC 60.965 61.111 0.00 0.00 0.00 4.17
2859 5150 3.712881 GCCACTGTCGTCGTTGCC 61.713 66.667 0.00 0.00 0.00 4.52
2861 5152 1.667830 CCACTGTCGTCGTTGCCAT 60.668 57.895 0.00 0.00 0.00 4.40
2862 5153 1.626654 CCACTGTCGTCGTTGCCATC 61.627 60.000 0.00 0.00 0.00 3.51
2863 5154 0.667487 CACTGTCGTCGTTGCCATCT 60.667 55.000 0.00 0.00 0.00 2.90
2864 5155 0.667487 ACTGTCGTCGTTGCCATCTG 60.667 55.000 0.00 0.00 0.00 2.90
2866 5157 0.388520 TGTCGTCGTTGCCATCTGAG 60.389 55.000 0.00 0.00 0.00 3.35
2869 5160 1.000394 TCGTCGTTGCCATCTGAGAAA 60.000 47.619 0.00 0.00 0.00 2.52
2871 5162 2.416547 CGTCGTTGCCATCTGAGAAATT 59.583 45.455 0.00 0.00 0.00 1.82
2874 5165 5.563842 GTCGTTGCCATCTGAGAAATTTAG 58.436 41.667 0.00 0.00 0.00 1.85
2875 5166 4.635765 TCGTTGCCATCTGAGAAATTTAGG 59.364 41.667 0.00 0.00 0.00 2.69
2876 5167 4.396166 CGTTGCCATCTGAGAAATTTAGGT 59.604 41.667 0.00 0.00 0.00 3.08
2877 5168 5.447818 CGTTGCCATCTGAGAAATTTAGGTC 60.448 44.000 0.00 0.00 0.00 3.85
2878 5169 4.526970 TGCCATCTGAGAAATTTAGGTCC 58.473 43.478 0.00 0.00 0.00 4.46
2879 5170 4.228210 TGCCATCTGAGAAATTTAGGTCCT 59.772 41.667 0.00 0.00 0.00 3.85
2880 5171 4.819088 GCCATCTGAGAAATTTAGGTCCTC 59.181 45.833 0.00 0.00 0.00 3.71
2881 5172 5.397334 GCCATCTGAGAAATTTAGGTCCTCT 60.397 44.000 0.00 0.00 0.00 3.69
2883 5174 5.584253 TCTGAGAAATTTAGGTCCTCTCG 57.416 43.478 0.00 0.00 36.19 4.04
2884 5175 4.116238 CTGAGAAATTTAGGTCCTCTCGC 58.884 47.826 0.00 0.00 36.19 5.03
2885 5176 3.118738 TGAGAAATTTAGGTCCTCTCGCC 60.119 47.826 0.00 0.00 36.19 5.54
2886 5177 3.108376 AGAAATTTAGGTCCTCTCGCCT 58.892 45.455 0.00 0.00 38.81 5.52
2887 5178 3.519913 AGAAATTTAGGTCCTCTCGCCTT 59.480 43.478 0.00 0.00 36.38 4.35
2888 5179 3.545366 AATTTAGGTCCTCTCGCCTTC 57.455 47.619 0.00 0.00 36.38 3.46
2889 5180 0.815734 TTTAGGTCCTCTCGCCTTCG 59.184 55.000 0.00 0.00 36.38 3.79
2890 5181 1.035932 TTAGGTCCTCTCGCCTTCGG 61.036 60.000 0.00 0.00 36.38 4.30
2891 5182 4.516195 GGTCCTCTCGCCTTCGGC 62.516 72.222 0.00 0.00 46.75 5.54
2900 5191 2.505982 GCCTTCGGCTGCCATCTA 59.494 61.111 20.29 0.00 46.69 1.98
2901 5192 1.596477 GCCTTCGGCTGCCATCTAG 60.596 63.158 20.29 9.17 46.69 2.43
2902 5193 1.070445 CCTTCGGCTGCCATCTAGG 59.930 63.158 20.29 14.22 41.84 3.02
2903 5194 1.690219 CCTTCGGCTGCCATCTAGGT 61.690 60.000 20.29 0.00 40.61 3.08
2904 5195 0.531532 CTTCGGCTGCCATCTAGGTG 60.532 60.000 20.29 0.00 40.61 4.00
2905 5196 2.590007 CGGCTGCCATCTAGGTGC 60.590 66.667 20.29 0.00 40.61 5.01
2906 5197 2.914289 GGCTGCCATCTAGGTGCT 59.086 61.111 15.17 0.00 40.61 4.40
2909 5200 1.542108 GGCTGCCATCTAGGTGCTAAG 60.542 57.143 15.17 0.00 40.61 2.18
2911 5202 2.547642 GCTGCCATCTAGGTGCTAAGAG 60.548 54.545 0.00 0.00 40.61 2.85
2912 5203 2.036992 CTGCCATCTAGGTGCTAAGAGG 59.963 54.545 0.00 0.00 40.61 3.69
2914 5205 2.224161 GCCATCTAGGTGCTAAGAGGTG 60.224 54.545 0.00 0.00 40.61 4.00
2915 5206 2.366916 CCATCTAGGTGCTAAGAGGTGG 59.633 54.545 0.00 0.00 0.00 4.61
2916 5207 2.160721 TCTAGGTGCTAAGAGGTGGG 57.839 55.000 0.00 0.00 0.00 4.61
2917 5208 1.123928 CTAGGTGCTAAGAGGTGGGG 58.876 60.000 0.00 0.00 0.00 4.96
2937 5228 3.467374 GGGACCTCAGATCTTCATGAC 57.533 52.381 0.00 0.00 0.00 3.06
2939 5230 2.428890 GGACCTCAGATCTTCATGACGT 59.571 50.000 0.00 0.00 0.00 4.34
2941 5232 3.360867 ACCTCAGATCTTCATGACGTCT 58.639 45.455 17.92 0.00 0.00 4.18
2942 5233 4.527944 ACCTCAGATCTTCATGACGTCTA 58.472 43.478 17.92 3.52 0.00 2.59
2944 5235 5.009510 ACCTCAGATCTTCATGACGTCTATG 59.990 44.000 17.92 17.30 0.00 2.23
2946 5237 6.456795 TCAGATCTTCATGACGTCTATGTT 57.543 37.500 17.92 6.26 0.00 2.71
2947 5238 6.499172 TCAGATCTTCATGACGTCTATGTTC 58.501 40.000 17.92 12.97 0.00 3.18
2948 5239 6.319911 TCAGATCTTCATGACGTCTATGTTCT 59.680 38.462 17.92 14.49 0.00 3.01
2949 5240 6.977502 CAGATCTTCATGACGTCTATGTTCTT 59.022 38.462 17.92 6.55 0.00 2.52
2950 5241 7.167302 CAGATCTTCATGACGTCTATGTTCTTC 59.833 40.741 17.92 13.24 0.00 2.87
2951 5242 5.332707 TCTTCATGACGTCTATGTTCTTCG 58.667 41.667 17.92 6.07 0.00 3.79
2953 5244 4.659088 TCATGACGTCTATGTTCTTCGTC 58.341 43.478 17.92 8.68 46.89 4.20
2956 5247 4.802664 GACGTCTATGTTCTTCGTCAAC 57.197 45.455 8.70 0.00 46.28 3.18
2957 5248 3.231965 ACGTCTATGTTCTTCGTCAACG 58.768 45.455 0.00 0.00 41.45 4.10
2959 5250 3.297461 CGTCTATGTTCTTCGTCAACGTC 59.703 47.826 2.09 0.00 40.80 4.34
2962 5253 5.733572 GTCTATGTTCTTCGTCAACGTCTAG 59.266 44.000 2.09 0.06 40.80 2.43
2964 5255 3.624900 TGTTCTTCGTCAACGTCTAGTG 58.375 45.455 2.09 0.00 40.80 2.74
2965 5256 3.313249 TGTTCTTCGTCAACGTCTAGTGA 59.687 43.478 2.09 0.00 40.80 3.41
2967 5258 4.337985 TCTTCGTCAACGTCTAGTGATC 57.662 45.455 2.09 0.00 40.80 2.92
2969 5260 4.395231 TCTTCGTCAACGTCTAGTGATCAT 59.605 41.667 0.00 0.00 40.80 2.45
2970 5261 4.274421 TCGTCAACGTCTAGTGATCATC 57.726 45.455 0.00 0.00 40.80 2.92
2971 5262 3.687698 TCGTCAACGTCTAGTGATCATCA 59.312 43.478 0.00 0.00 40.80 3.07
2972 5263 4.335594 TCGTCAACGTCTAGTGATCATCAT 59.664 41.667 0.00 0.00 40.80 2.45
2973 5264 5.526111 TCGTCAACGTCTAGTGATCATCATA 59.474 40.000 0.00 0.00 40.80 2.15
2976 5267 6.853872 GTCAACGTCTAGTGATCATCATAGTC 59.146 42.308 0.00 0.00 0.00 2.59
2977 5268 6.768381 TCAACGTCTAGTGATCATCATAGTCT 59.232 38.462 0.00 0.00 0.00 3.24
2978 5269 7.283354 TCAACGTCTAGTGATCATCATAGTCTT 59.717 37.037 0.00 0.00 0.00 3.01
2979 5270 6.964908 ACGTCTAGTGATCATCATAGTCTTG 58.035 40.000 0.00 0.00 0.00 3.02
2980 5271 6.544197 ACGTCTAGTGATCATCATAGTCTTGT 59.456 38.462 0.00 0.00 0.00 3.16
2981 5272 6.855403 CGTCTAGTGATCATCATAGTCTTGTG 59.145 42.308 0.00 0.00 0.00 3.33
2983 5274 8.075574 GTCTAGTGATCATCATAGTCTTGTGAG 58.924 40.741 0.00 0.00 0.00 3.51
2985 5276 7.415592 AGTGATCATCATAGTCTTGTGAGAA 57.584 36.000 0.00 0.00 32.66 2.87
2987 5278 9.140874 AGTGATCATCATAGTCTTGTGAGAATA 57.859 33.333 0.00 0.00 36.94 1.75
2988 5279 9.755804 GTGATCATCATAGTCTTGTGAGAATAA 57.244 33.333 0.00 0.00 36.21 1.40
2998 5289 8.785329 AGTCTTGTGAGAATAAATTTCCTCTC 57.215 34.615 16.97 16.97 35.82 3.20
2999 5290 7.547370 AGTCTTGTGAGAATAAATTTCCTCTCG 59.453 37.037 17.93 8.93 37.69 4.04
3000 5291 7.332182 GTCTTGTGAGAATAAATTTCCTCTCGT 59.668 37.037 17.93 0.00 37.69 4.18
3002 5293 7.596749 TGTGAGAATAAATTTCCTCTCGTTC 57.403 36.000 17.93 13.38 37.69 3.95
3004 5295 7.878127 TGTGAGAATAAATTTCCTCTCGTTCTT 59.122 33.333 17.93 0.00 37.69 2.52
3006 5297 9.284968 TGAGAATAAATTTCCTCTCGTTCTTTT 57.715 29.630 17.93 0.00 37.69 2.27
3007 5298 9.548208 GAGAATAAATTTCCTCTCGTTCTTTTG 57.452 33.333 11.61 0.00 0.00 2.44
3008 5299 8.515414 AGAATAAATTTCCTCTCGTTCTTTTGG 58.485 33.333 0.00 0.00 0.00 3.28
3009 5300 4.505313 AATTTCCTCTCGTTCTTTTGGC 57.495 40.909 0.00 0.00 0.00 4.52
3010 5301 1.508632 TTCCTCTCGTTCTTTTGGCG 58.491 50.000 0.00 0.00 0.00 5.69
3011 5302 0.320421 TCCTCTCGTTCTTTTGGCGG 60.320 55.000 0.00 0.00 0.00 6.13
3012 5303 0.602905 CCTCTCGTTCTTTTGGCGGT 60.603 55.000 0.00 0.00 0.00 5.68
3013 5304 0.512952 CTCTCGTTCTTTTGGCGGTG 59.487 55.000 0.00 0.00 0.00 4.94
3014 5305 1.082104 CTCGTTCTTTTGGCGGTGC 60.082 57.895 0.00 0.00 0.00 5.01
3025 5316 3.813596 GCGGTGCCATGAGGTTAG 58.186 61.111 0.00 0.00 37.19 2.34
3026 5317 1.220749 GCGGTGCCATGAGGTTAGA 59.779 57.895 0.00 0.00 37.19 2.10
3027 5318 0.811616 GCGGTGCCATGAGGTTAGAG 60.812 60.000 0.00 0.00 37.19 2.43
3028 5319 0.824109 CGGTGCCATGAGGTTAGAGA 59.176 55.000 0.00 0.00 37.19 3.10
3029 5320 1.202463 CGGTGCCATGAGGTTAGAGAG 60.202 57.143 0.00 0.00 37.19 3.20
3031 5322 2.237392 GGTGCCATGAGGTTAGAGAGTT 59.763 50.000 0.00 0.00 37.19 3.01
3032 5323 3.307762 GGTGCCATGAGGTTAGAGAGTTT 60.308 47.826 0.00 0.00 37.19 2.66
3033 5324 4.327680 GTGCCATGAGGTTAGAGAGTTTT 58.672 43.478 0.00 0.00 37.19 2.43
3034 5325 4.393371 GTGCCATGAGGTTAGAGAGTTTTC 59.607 45.833 0.00 0.00 37.19 2.29
3035 5326 4.287067 TGCCATGAGGTTAGAGAGTTTTCT 59.713 41.667 0.00 0.00 37.19 2.52
3036 5327 4.633565 GCCATGAGGTTAGAGAGTTTTCTG 59.366 45.833 0.00 0.00 37.19 3.02
3037 5328 5.799213 CCATGAGGTTAGAGAGTTTTCTGT 58.201 41.667 0.00 0.00 32.53 3.41
3038 5329 5.872070 CCATGAGGTTAGAGAGTTTTCTGTC 59.128 44.000 0.00 0.00 40.05 3.51
3039 5330 5.470047 TGAGGTTAGAGAGTTTTCTGTCC 57.530 43.478 0.00 0.00 40.55 4.02
3041 5332 5.244178 TGAGGTTAGAGAGTTTTCTGTCCTC 59.756 44.000 15.08 15.08 42.27 3.71
3042 5333 5.148502 AGGTTAGAGAGTTTTCTGTCCTCA 58.851 41.667 0.00 0.00 40.55 3.86
3043 5334 5.011227 AGGTTAGAGAGTTTTCTGTCCTCAC 59.989 44.000 0.00 0.00 40.55 3.51
3044 5335 5.221461 GGTTAGAGAGTTTTCTGTCCTCACA 60.221 44.000 0.00 0.00 40.55 3.58
3053 5344 2.276869 TGTCCTCACAGATCCGTGG 58.723 57.895 9.18 0.63 37.50 4.94
3055 5346 1.115467 GTCCTCACAGATCCGTGGAT 58.885 55.000 9.18 0.00 37.50 3.41
3066 5357 4.065321 GATCCGTGGATCTGATGAGTTT 57.935 45.455 19.42 0.00 45.42 2.66
3068 5359 5.788450 GATCCGTGGATCTGATGAGTTTAT 58.212 41.667 19.42 0.00 45.42 1.40
3069 5360 6.918067 ATCCGTGGATCTGATGAGTTTATA 57.082 37.500 0.00 0.00 0.00 0.98
3072 5363 7.154656 TCCGTGGATCTGATGAGTTTATATTG 58.845 38.462 0.00 0.00 0.00 1.90
3077 5368 9.112725 TGGATCTGATGAGTTTATATTGTTGTG 57.887 33.333 0.00 0.00 0.00 3.33
3078 5369 9.113838 GGATCTGATGAGTTTATATTGTTGTGT 57.886 33.333 0.00 0.00 0.00 3.72
3080 5371 9.671279 ATCTGATGAGTTTATATTGTTGTGTCA 57.329 29.630 0.00 0.00 0.00 3.58
3110 5401 7.659652 TTTTTGTTGGTTTAACTCTTTGTGG 57.340 32.000 0.00 0.00 40.05 4.17
3112 5403 5.828299 TGTTGGTTTAACTCTTTGTGGAG 57.172 39.130 0.00 0.00 40.05 3.86
3113 5404 4.642885 TGTTGGTTTAACTCTTTGTGGAGG 59.357 41.667 0.00 0.00 40.05 4.30
3114 5405 4.513406 TGGTTTAACTCTTTGTGGAGGT 57.487 40.909 0.00 0.00 37.63 3.85
3115 5406 4.204012 TGGTTTAACTCTTTGTGGAGGTG 58.796 43.478 0.00 0.00 37.63 4.00
3116 5407 4.080243 TGGTTTAACTCTTTGTGGAGGTGA 60.080 41.667 0.00 0.00 37.63 4.02
3117 5408 4.885325 GGTTTAACTCTTTGTGGAGGTGAA 59.115 41.667 0.00 0.00 37.63 3.18
3118 5409 5.358725 GGTTTAACTCTTTGTGGAGGTGAAA 59.641 40.000 0.00 0.00 37.63 2.69
3119 5410 6.040504 GGTTTAACTCTTTGTGGAGGTGAAAT 59.959 38.462 0.00 0.00 37.63 2.17
3120 5411 6.877611 TTAACTCTTTGTGGAGGTGAAATC 57.122 37.500 0.00 0.00 37.63 2.17
3121 5412 4.713792 ACTCTTTGTGGAGGTGAAATCT 57.286 40.909 0.00 0.00 37.63 2.40
3122 5413 5.053978 ACTCTTTGTGGAGGTGAAATCTT 57.946 39.130 0.00 0.00 37.63 2.40
3123 5414 5.449553 ACTCTTTGTGGAGGTGAAATCTTT 58.550 37.500 0.00 0.00 37.63 2.52
3124 5415 5.893824 ACTCTTTGTGGAGGTGAAATCTTTT 59.106 36.000 0.00 0.00 37.63 2.27
3125 5416 7.060421 ACTCTTTGTGGAGGTGAAATCTTTTA 58.940 34.615 0.00 0.00 37.63 1.52
3127 5418 8.110860 TCTTTGTGGAGGTGAAATCTTTTATC 57.889 34.615 0.00 0.00 0.00 1.75
3128 5419 6.494893 TTGTGGAGGTGAAATCTTTTATCG 57.505 37.500 0.00 0.00 0.00 2.92
3130 5421 5.642063 TGTGGAGGTGAAATCTTTTATCGAC 59.358 40.000 0.00 0.00 0.00 4.20
3132 5423 5.642063 TGGAGGTGAAATCTTTTATCGACAC 59.358 40.000 0.00 0.00 0.00 3.67
3133 5424 5.064834 GGAGGTGAAATCTTTTATCGACACC 59.935 44.000 0.00 0.00 44.36 4.16
3134 5425 5.556915 AGGTGAAATCTTTTATCGACACCA 58.443 37.500 14.54 0.00 45.79 4.17
3137 5428 6.258160 GTGAAATCTTTTATCGACACCATGG 58.742 40.000 11.19 11.19 0.00 3.66
3155 5446 6.459066 ACCATGGTGAAGATATAGTGATTCG 58.541 40.000 18.99 0.00 0.00 3.34
3157 5448 6.587990 CCATGGTGAAGATATAGTGATTCGAC 59.412 42.308 2.57 0.00 0.00 4.20
3158 5449 5.758924 TGGTGAAGATATAGTGATTCGACG 58.241 41.667 0.00 0.00 0.00 5.12
3159 5450 5.154932 GGTGAAGATATAGTGATTCGACGG 58.845 45.833 0.00 0.00 0.00 4.79
3160 5451 5.048921 GGTGAAGATATAGTGATTCGACGGA 60.049 44.000 0.00 0.00 0.00 4.69
3161 5452 5.852229 GTGAAGATATAGTGATTCGACGGAC 59.148 44.000 0.00 0.00 0.00 4.79
3162 5453 5.763698 TGAAGATATAGTGATTCGACGGACT 59.236 40.000 0.00 0.00 0.00 3.85
3163 5454 5.614923 AGATATAGTGATTCGACGGACTG 57.385 43.478 0.00 0.00 0.00 3.51
3164 5455 2.493713 ATAGTGATTCGACGGACTGC 57.506 50.000 0.00 0.00 0.00 4.40
3165 5456 1.170442 TAGTGATTCGACGGACTGCA 58.830 50.000 0.00 0.00 0.00 4.41
3166 5457 0.388649 AGTGATTCGACGGACTGCAC 60.389 55.000 0.00 0.00 0.00 4.57
3168 5459 0.317160 TGATTCGACGGACTGCACTT 59.683 50.000 0.00 0.00 0.00 3.16
3169 5460 0.992802 GATTCGACGGACTGCACTTC 59.007 55.000 0.00 0.00 0.00 3.01
3170 5461 0.603569 ATTCGACGGACTGCACTTCT 59.396 50.000 0.00 0.00 0.00 2.85
3172 5463 0.803117 TCGACGGACTGCACTTCTAG 59.197 55.000 0.00 0.00 0.00 2.43
3173 5464 0.179161 CGACGGACTGCACTTCTAGG 60.179 60.000 0.00 0.00 0.00 3.02
3174 5465 0.889306 GACGGACTGCACTTCTAGGT 59.111 55.000 0.00 0.00 0.00 3.08
3175 5466 0.603569 ACGGACTGCACTTCTAGGTG 59.396 55.000 0.00 0.00 39.91 4.00
3176 5467 0.888619 CGGACTGCACTTCTAGGTGA 59.111 55.000 3.57 0.00 39.34 4.02
3177 5468 1.478510 CGGACTGCACTTCTAGGTGAT 59.521 52.381 3.57 0.00 39.34 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.176406 CAGTAGGTGCATTTATGACATCGAG 59.824 44.000 0.00 0.00 0.00 4.04
25 26 5.050769 CGACAGTAGGTGCATTTATGACATC 60.051 44.000 0.00 0.00 0.00 3.06
48 49 1.466360 CCTCCGTTCCGTGTAGTAACG 60.466 57.143 0.00 0.00 44.13 3.18
203 208 6.701145 TCAACTAACTGCAGGAGTAGATAG 57.299 41.667 19.93 10.31 38.31 2.08
216 221 7.442364 TCTTGTTTTCTCCTGATCAACTAACTG 59.558 37.037 0.00 0.00 0.00 3.16
217 222 7.509546 TCTTGTTTTCTCCTGATCAACTAACT 58.490 34.615 0.00 0.00 0.00 2.24
218 223 7.730364 TCTTGTTTTCTCCTGATCAACTAAC 57.270 36.000 0.00 0.00 0.00 2.34
241 246 3.123050 GTGGCAAGTGGTTTTGAACATC 58.877 45.455 0.00 0.00 0.00 3.06
306 311 5.011090 TGAGTCGTGCTAATTTGCTCTAT 57.989 39.130 12.99 0.00 0.00 1.98
377 382 8.812147 TTATAGTAGTAATCAAGTTGATGCGG 57.188 34.615 18.94 0.00 37.15 5.69
394 399 8.624776 TCATCATGCGATACCAGATTATAGTAG 58.375 37.037 0.00 0.00 0.00 2.57
475 490 3.217626 GCTGAAAATATAGGCTGCTGGT 58.782 45.455 0.00 0.00 0.00 4.00
476 491 2.555757 GGCTGAAAATATAGGCTGCTGG 59.444 50.000 0.00 0.00 36.63 4.85
477 492 3.216800 TGGCTGAAAATATAGGCTGCTG 58.783 45.455 0.00 0.00 39.90 4.41
478 493 3.582998 TGGCTGAAAATATAGGCTGCT 57.417 42.857 0.00 0.00 39.90 4.24
479 494 3.822735 TGATGGCTGAAAATATAGGCTGC 59.177 43.478 0.00 0.00 39.90 5.25
480 495 5.944599 AGATGATGGCTGAAAATATAGGCTG 59.055 40.000 0.00 0.00 39.90 4.85
532 547 2.027605 AGTGTGGTGCGTCACTCG 59.972 61.111 10.00 0.00 40.28 4.18
621 637 2.355716 CGGAAAGGTGAGCTTCCCAATA 60.356 50.000 0.00 0.00 38.31 1.90
744 760 2.759191 TCTCAATTATGCCTAGCGCTG 58.241 47.619 22.90 10.13 38.78 5.18
819 838 4.599434 TTTGAACGCACGCACGCC 62.599 61.111 0.00 0.00 36.19 5.68
933 952 1.427020 GCTGCTGCGATTGAGTTCC 59.573 57.895 0.00 0.00 0.00 3.62
996 1015 0.249676 TACTCCTCGCTGACTCGACT 59.750 55.000 0.00 0.00 34.46 4.18
997 1016 0.374410 GTACTCCTCGCTGACTCGAC 59.626 60.000 0.00 0.00 34.46 4.20
998 1017 1.082679 CGTACTCCTCGCTGACTCGA 61.083 60.000 0.00 0.00 36.94 4.04
999 1018 1.348938 CGTACTCCTCGCTGACTCG 59.651 63.158 0.00 0.00 0.00 4.18
1000 1019 0.374410 GACGTACTCCTCGCTGACTC 59.626 60.000 0.00 0.00 0.00 3.36
1184 1206 4.680237 TCACACCTCCAAGCGGCG 62.680 66.667 0.51 0.51 0.00 6.46
1203 1225 4.699735 ACATCAAAATCAGCACCGATACAA 59.300 37.500 0.00 0.00 0.00 2.41
1207 1229 2.424601 CCACATCAAAATCAGCACCGAT 59.575 45.455 0.00 0.00 0.00 4.18
1210 1232 1.895131 ACCCACATCAAAATCAGCACC 59.105 47.619 0.00 0.00 0.00 5.01
1279 1301 0.596083 CTGAATCGCCTCTAGCACCG 60.596 60.000 0.00 0.00 44.04 4.94
1282 1304 1.035923 CTCCTGAATCGCCTCTAGCA 58.964 55.000 0.00 0.00 44.04 3.49
1291 1313 2.033065 CGTACGTACCTCTCCTGAATCG 60.033 54.545 19.67 0.00 0.00 3.34
1360 1382 2.348888 CCCAAGCGAGAGGTACCGT 61.349 63.158 6.18 0.00 43.76 4.83
1361 1383 1.885163 AACCCAAGCGAGAGGTACCG 61.885 60.000 6.18 0.00 43.76 4.02
1362 1384 0.108281 GAACCCAAGCGAGAGGTACC 60.108 60.000 2.73 2.73 43.76 3.34
1363 1385 0.606604 TGAACCCAAGCGAGAGGTAC 59.393 55.000 0.00 0.00 43.76 3.34
1364 1386 0.606604 GTGAACCCAAGCGAGAGGTA 59.393 55.000 0.00 0.00 43.76 3.08
1425 1452 0.179702 TGAGATGGCATCAGGCTGAC 59.820 55.000 27.93 8.05 44.01 3.51
1550 1586 9.208022 TCACACTGTCATCAGATTACTAAAAAG 57.792 33.333 2.17 0.00 43.76 2.27
1563 1599 4.067192 CACCAAGAATCACACTGTCATCA 58.933 43.478 0.00 0.00 0.00 3.07
1564 1600 4.153117 GTCACCAAGAATCACACTGTCATC 59.847 45.833 0.00 0.00 0.00 2.92
1565 1601 4.067896 GTCACCAAGAATCACACTGTCAT 58.932 43.478 0.00 0.00 0.00 3.06
1651 1687 8.322428 CGCGTTGATGTACAATAAACTACAATA 58.678 33.333 0.00 0.00 40.76 1.90
1652 1688 7.177407 CGCGTTGATGTACAATAAACTACAAT 58.823 34.615 0.00 0.00 40.76 2.71
1653 1689 6.401260 CCGCGTTGATGTACAATAAACTACAA 60.401 38.462 4.92 0.00 40.76 2.41
1654 1690 5.062433 CCGCGTTGATGTACAATAAACTACA 59.938 40.000 4.92 0.00 40.76 2.74
1655 1691 5.486706 CCGCGTTGATGTACAATAAACTAC 58.513 41.667 4.92 0.12 40.76 2.73
1656 1692 4.567558 CCCGCGTTGATGTACAATAAACTA 59.432 41.667 4.92 0.00 40.76 2.24
1657 1693 3.372822 CCCGCGTTGATGTACAATAAACT 59.627 43.478 4.92 0.00 40.76 2.66
1658 1694 3.676540 CCCGCGTTGATGTACAATAAAC 58.323 45.455 4.92 4.21 40.76 2.01
1659 1695 2.096174 GCCCGCGTTGATGTACAATAAA 59.904 45.455 4.92 0.00 40.76 1.40
1660 1696 1.666700 GCCCGCGTTGATGTACAATAA 59.333 47.619 4.92 0.00 40.76 1.40
1661 1697 1.292061 GCCCGCGTTGATGTACAATA 58.708 50.000 4.92 0.00 40.76 1.90
1662 1698 0.675208 TGCCCGCGTTGATGTACAAT 60.675 50.000 4.92 0.00 40.76 2.71
1663 1699 0.675208 ATGCCCGCGTTGATGTACAA 60.675 50.000 4.92 0.00 36.02 2.41
1712 1748 6.777580 AGTTCTCTGAATATGGTTTGGTTTGT 59.222 34.615 0.00 0.00 0.00 2.83
1713 1749 7.086376 CAGTTCTCTGAATATGGTTTGGTTTG 58.914 38.462 0.00 0.00 43.76 2.93
1714 1750 6.777580 ACAGTTCTCTGAATATGGTTTGGTTT 59.222 34.615 2.17 0.00 43.76 3.27
1715 1751 6.306987 ACAGTTCTCTGAATATGGTTTGGTT 58.693 36.000 2.17 0.00 43.76 3.67
1716 1752 5.880901 ACAGTTCTCTGAATATGGTTTGGT 58.119 37.500 2.17 0.00 43.76 3.67
1717 1753 7.106239 AGTACAGTTCTCTGAATATGGTTTGG 58.894 38.462 0.00 0.00 43.76 3.28
1718 1754 9.823647 ATAGTACAGTTCTCTGAATATGGTTTG 57.176 33.333 0.00 0.00 43.76 2.93
1741 1777 3.848272 ATTGCGTGAACCCAAACATAG 57.152 42.857 0.00 0.00 0.00 2.23
1744 1780 4.155099 CAGTATATTGCGTGAACCCAAACA 59.845 41.667 0.00 0.00 0.00 2.83
1745 1781 4.155280 ACAGTATATTGCGTGAACCCAAAC 59.845 41.667 0.00 0.00 0.00 2.93
1756 1804 5.487433 TGATATGGGGAACAGTATATTGCG 58.513 41.667 0.00 0.00 0.00 4.85
1762 1810 7.213178 AGAGTTTTGATATGGGGAACAGTAT 57.787 36.000 0.00 0.00 0.00 2.12
1768 1816 4.934356 AGCAAGAGTTTTGATATGGGGAA 58.066 39.130 0.00 0.00 0.00 3.97
1773 1821 9.330063 TGATTACCTAGCAAGAGTTTTGATATG 57.670 33.333 0.00 0.00 0.00 1.78
1774 1822 9.905713 TTGATTACCTAGCAAGAGTTTTGATAT 57.094 29.630 0.00 0.00 0.00 1.63
1775 1823 9.905713 ATTGATTACCTAGCAAGAGTTTTGATA 57.094 29.630 0.00 0.00 0.00 2.15
1782 1830 7.568349 TGATTGATTGATTACCTAGCAAGAGT 58.432 34.615 0.00 0.00 30.33 3.24
1841 1897 2.654079 CGCTCTCCCTCCTGTTGCT 61.654 63.158 0.00 0.00 0.00 3.91
1981 2037 3.386237 GGCGAGCTGAGGGTCTGT 61.386 66.667 0.00 0.00 37.77 3.41
2046 2104 7.201617 GGGTTCTAAGTTCTAATTTGTCGATGG 60.202 40.741 0.00 0.00 0.00 3.51
2140 2198 6.823689 TGGACTTCTCTTAATAGAAATGGCAC 59.176 38.462 4.99 0.00 35.14 5.01
2197 2255 5.574970 ATCAGGGACTTCTCTTCAGTTTT 57.425 39.130 0.00 0.00 34.60 2.43
2236 2296 1.504359 CTGGCATGTTTTGGTTGCAG 58.496 50.000 0.00 0.00 38.12 4.41
2298 2473 3.819564 TCACCCATTCTATCGTTCCTG 57.180 47.619 0.00 0.00 0.00 3.86
2335 4432 2.825532 GGATGCAGGTAACCAAACACAT 59.174 45.455 0.00 0.00 37.17 3.21
2351 4448 1.878734 GAGCCTGCAAAGATAGGATGC 59.121 52.381 0.00 0.00 40.45 3.91
2353 4450 3.044156 TCAGAGCCTGCAAAGATAGGAT 58.956 45.455 0.00 0.00 36.11 3.24
2359 4456 0.612229 CCTCTCAGAGCCTGCAAAGA 59.388 55.000 0.00 0.00 0.00 2.52
2362 4459 2.667418 GCCTCTCAGAGCCTGCAA 59.333 61.111 0.00 0.00 0.00 4.08
2409 4506 3.530265 TGCGGGTATGTTTCTTCGTAT 57.470 42.857 0.00 0.00 0.00 3.06
2410 4507 3.056678 TCTTGCGGGTATGTTTCTTCGTA 60.057 43.478 0.00 0.00 0.00 3.43
2436 4533 1.691196 CTGTTTGAGGGGTGCTTTCA 58.309 50.000 0.00 0.00 0.00 2.69
2459 4556 7.921786 ATAATCGATTTGAGTGTTTCTCCAA 57.078 32.000 17.19 0.00 42.12 3.53
2478 4575 6.025896 CAGGCATGCATACGATGAAATAATC 58.974 40.000 21.36 0.00 0.00 1.75
2482 4579 2.555325 CCAGGCATGCATACGATGAAAT 59.445 45.455 21.36 0.00 0.00 2.17
2484 4581 1.140652 TCCAGGCATGCATACGATGAA 59.859 47.619 21.36 0.00 0.00 2.57
2487 4584 1.348696 TGATCCAGGCATGCATACGAT 59.651 47.619 21.36 16.19 0.00 3.73
2490 4587 2.352421 GCATTGATCCAGGCATGCATAC 60.352 50.000 21.36 1.57 35.35 2.39
2501 4598 6.883756 TCTGTAGTGTAAATTGCATTGATCCA 59.116 34.615 0.00 0.00 0.00 3.41
2517 4614 3.589988 CCGCAATCTCTTTCTGTAGTGT 58.410 45.455 0.00 0.00 0.00 3.55
2520 4617 3.252974 ACCCGCAATCTCTTTCTGTAG 57.747 47.619 0.00 0.00 0.00 2.74
2523 4620 1.470098 CCAACCCGCAATCTCTTTCTG 59.530 52.381 0.00 0.00 0.00 3.02
2526 4623 2.286365 TTCCAACCCGCAATCTCTTT 57.714 45.000 0.00 0.00 0.00 2.52
2532 4629 2.549778 CCACAAAATTCCAACCCGCAAT 60.550 45.455 0.00 0.00 0.00 3.56
2537 4634 0.761802 TGCCCACAAAATTCCAACCC 59.238 50.000 0.00 0.00 0.00 4.11
2543 4640 5.469421 TGATGTTTGATTGCCCACAAAATTC 59.531 36.000 0.00 0.00 39.77 2.17
2551 4648 1.900486 TGCATGATGTTTGATTGCCCA 59.100 42.857 0.00 0.00 32.39 5.36
2578 4675 2.103771 TGAGGGAATGTATGCTCTGAGC 59.896 50.000 22.38 22.38 42.82 4.26
2579 4676 4.202336 ACATGAGGGAATGTATGCTCTGAG 60.202 45.833 0.00 0.00 39.01 3.35
2580 4677 3.713248 ACATGAGGGAATGTATGCTCTGA 59.287 43.478 0.00 0.00 39.01 3.27
2587 4684 3.584848 GGAGGCTACATGAGGGAATGTAT 59.415 47.826 0.00 0.00 41.11 2.29
2593 4690 0.339859 AGTGGAGGCTACATGAGGGA 59.660 55.000 0.94 0.00 0.00 4.20
2594 4691 0.467384 CAGTGGAGGCTACATGAGGG 59.533 60.000 0.94 0.00 0.00 4.30
2595 4692 0.467384 CCAGTGGAGGCTACATGAGG 59.533 60.000 0.94 1.21 0.00 3.86
2623 4720 1.607148 GAGGGTTTCACGTTTCCCAAG 59.393 52.381 13.97 0.00 42.12 3.61
2656 4753 3.611517 GAGACAAATACATGCATCGTGC 58.388 45.455 0.00 3.44 45.29 5.34
2662 4759 2.401583 AGGCGAGACAAATACATGCA 57.598 45.000 0.00 0.00 0.00 3.96
2666 4763 5.142061 TCACTAAAGGCGAGACAAATACA 57.858 39.130 0.00 0.00 0.00 2.29
2669 4766 3.600388 CCTCACTAAAGGCGAGACAAAT 58.400 45.455 0.00 0.00 0.00 2.32
2758 4881 1.519455 GCAGAATAGGACGTGCGCT 60.519 57.895 9.73 0.00 0.00 5.92
2761 4884 6.787085 AATAAATAGCAGAATAGGACGTGC 57.213 37.500 0.00 0.00 36.10 5.34
2764 4887 9.046296 ACTGAAAATAAATAGCAGAATAGGACG 57.954 33.333 0.00 0.00 0.00 4.79
2774 4897 7.090173 GCAGGAACAACTGAAAATAAATAGCA 58.910 34.615 0.00 0.00 40.97 3.49
2781 4904 4.260990 CGTGTGCAGGAACAACTGAAAATA 60.261 41.667 0.00 0.00 40.97 1.40
2787 4910 1.013596 TTCGTGTGCAGGAACAACTG 58.986 50.000 3.55 0.00 41.41 3.16
2788 4911 1.967319 ATTCGTGTGCAGGAACAACT 58.033 45.000 9.11 0.00 37.92 3.16
2792 4915 4.189231 ACCTATTATTCGTGTGCAGGAAC 58.811 43.478 9.11 0.00 37.92 3.62
2794 4917 4.081365 TGAACCTATTATTCGTGTGCAGGA 60.081 41.667 0.00 0.00 0.00 3.86
2795 4918 4.188462 TGAACCTATTATTCGTGTGCAGG 58.812 43.478 0.00 0.00 0.00 4.85
2796 4919 5.277490 CCATGAACCTATTATTCGTGTGCAG 60.277 44.000 0.00 0.00 40.16 4.41
2797 4920 4.574421 CCATGAACCTATTATTCGTGTGCA 59.426 41.667 0.00 0.00 40.16 4.57
2798 4921 4.574828 ACCATGAACCTATTATTCGTGTGC 59.425 41.667 0.00 0.00 40.16 4.57
2799 4922 6.677781 AACCATGAACCTATTATTCGTGTG 57.322 37.500 0.00 1.81 40.16 3.82
2800 4923 7.110155 AGAAACCATGAACCTATTATTCGTGT 58.890 34.615 0.00 0.00 40.16 4.49
2801 4924 7.553881 AGAAACCATGAACCTATTATTCGTG 57.446 36.000 0.00 0.00 41.04 4.35
2802 4925 7.610305 ACAAGAAACCATGAACCTATTATTCGT 59.390 33.333 0.00 0.00 0.00 3.85
2803 4926 7.910162 CACAAGAAACCATGAACCTATTATTCG 59.090 37.037 0.00 0.00 0.00 3.34
2804 4927 8.956426 TCACAAGAAACCATGAACCTATTATTC 58.044 33.333 0.00 0.00 0.00 1.75
2809 5100 4.695455 CGTCACAAGAAACCATGAACCTAT 59.305 41.667 0.00 0.00 0.00 2.57
2812 5103 2.031157 CCGTCACAAGAAACCATGAACC 60.031 50.000 0.00 0.00 0.00 3.62
2816 5107 3.315191 AGAAACCGTCACAAGAAACCATG 59.685 43.478 0.00 0.00 0.00 3.66
2819 5110 2.033151 CGAGAAACCGTCACAAGAAACC 60.033 50.000 0.00 0.00 0.00 3.27
2821 5112 2.605818 CACGAGAAACCGTCACAAGAAA 59.394 45.455 0.00 0.00 41.29 2.52
2823 5114 1.847818 CACGAGAAACCGTCACAAGA 58.152 50.000 0.00 0.00 41.29 3.02
2829 5120 1.300697 AGTGGCACGAGAAACCGTC 60.301 57.895 12.71 0.00 41.29 4.79
2830 5121 1.594293 CAGTGGCACGAGAAACCGT 60.594 57.895 12.71 0.00 44.43 4.83
2831 5122 1.557443 GACAGTGGCACGAGAAACCG 61.557 60.000 12.71 0.00 0.00 4.44
2832 5123 1.557443 CGACAGTGGCACGAGAAACC 61.557 60.000 12.71 0.00 0.00 3.27
2833 5124 0.874607 ACGACAGTGGCACGAGAAAC 60.875 55.000 12.71 5.98 0.00 2.78
2834 5125 0.596600 GACGACAGTGGCACGAGAAA 60.597 55.000 12.71 0.00 0.00 2.52
2836 5127 2.643272 GACGACAGTGGCACGAGA 59.357 61.111 12.71 0.00 0.00 4.04
2837 5128 2.801162 CGACGACAGTGGCACGAG 60.801 66.667 12.71 11.64 0.00 4.18
2838 5129 3.128632 AACGACGACAGTGGCACGA 62.129 57.895 17.39 0.00 0.00 4.35
2839 5130 2.657296 AACGACGACAGTGGCACG 60.657 61.111 12.71 9.83 0.00 5.34
2840 5131 2.928361 CAACGACGACAGTGGCAC 59.072 61.111 10.29 10.29 0.00 5.01
2841 5132 2.964925 GCAACGACGACAGTGGCA 60.965 61.111 0.00 0.00 38.38 4.92
2842 5133 3.712881 GGCAACGACGACAGTGGC 61.713 66.667 0.00 2.66 37.80 5.01
2843 5134 1.626654 GATGGCAACGACGACAGTGG 61.627 60.000 0.00 0.00 42.51 4.00
2844 5135 0.667487 AGATGGCAACGACGACAGTG 60.667 55.000 0.00 0.00 42.51 3.66
2845 5136 0.667487 CAGATGGCAACGACGACAGT 60.667 55.000 0.00 0.00 42.51 3.55
2846 5137 0.388520 TCAGATGGCAACGACGACAG 60.389 55.000 0.00 0.00 42.51 3.51
2848 5139 0.109272 TCTCAGATGGCAACGACGAC 60.109 55.000 0.00 0.00 42.51 4.34
2849 5140 0.601057 TTCTCAGATGGCAACGACGA 59.399 50.000 0.00 0.00 42.51 4.20
2851 5142 4.425577 AAATTTCTCAGATGGCAACGAC 57.574 40.909 0.00 0.00 42.51 4.34
2853 5144 4.396166 ACCTAAATTTCTCAGATGGCAACG 59.604 41.667 0.00 0.00 42.51 4.10
2854 5145 5.163612 GGACCTAAATTTCTCAGATGGCAAC 60.164 44.000 0.00 0.00 0.00 4.17
2855 5146 4.949856 GGACCTAAATTTCTCAGATGGCAA 59.050 41.667 0.00 0.00 0.00 4.52
2857 5148 4.786425 AGGACCTAAATTTCTCAGATGGC 58.214 43.478 0.00 0.00 0.00 4.40
2858 5149 6.245890 AGAGGACCTAAATTTCTCAGATGG 57.754 41.667 0.00 0.00 0.00 3.51
2859 5150 5.982516 CGAGAGGACCTAAATTTCTCAGATG 59.017 44.000 0.00 0.00 35.22 2.90
2861 5152 4.142138 GCGAGAGGACCTAAATTTCTCAGA 60.142 45.833 0.00 0.00 35.22 3.27
2862 5153 4.116238 GCGAGAGGACCTAAATTTCTCAG 58.884 47.826 0.00 0.00 35.22 3.35
2863 5154 3.118738 GGCGAGAGGACCTAAATTTCTCA 60.119 47.826 0.00 0.00 35.22 3.27
2864 5155 3.133183 AGGCGAGAGGACCTAAATTTCTC 59.867 47.826 0.00 0.00 33.38 2.87
2866 5157 3.545366 AGGCGAGAGGACCTAAATTTC 57.455 47.619 0.00 0.00 33.38 2.17
2869 5160 1.409427 CGAAGGCGAGAGGACCTAAAT 59.591 52.381 0.00 0.00 40.82 1.40
2871 5162 1.035932 CCGAAGGCGAGAGGACCTAA 61.036 60.000 0.00 0.00 46.14 2.69
2885 5176 0.531532 CACCTAGATGGCAGCCGAAG 60.532 60.000 7.03 0.98 40.22 3.79
2886 5177 1.522092 CACCTAGATGGCAGCCGAA 59.478 57.895 7.03 0.00 40.22 4.30
2887 5178 3.094062 GCACCTAGATGGCAGCCGA 62.094 63.158 7.03 0.00 40.22 5.54
2888 5179 1.748329 TAGCACCTAGATGGCAGCCG 61.748 60.000 7.03 0.00 39.94 5.52
2889 5180 0.469917 TTAGCACCTAGATGGCAGCC 59.530 55.000 3.66 3.66 39.94 4.85
2890 5181 1.414181 TCTTAGCACCTAGATGGCAGC 59.586 52.381 0.00 0.00 40.22 5.25
2891 5182 2.036992 CCTCTTAGCACCTAGATGGCAG 59.963 54.545 0.00 0.00 40.22 4.85
2892 5183 2.042464 CCTCTTAGCACCTAGATGGCA 58.958 52.381 0.00 0.00 40.22 4.92
2894 5185 2.366916 CCACCTCTTAGCACCTAGATGG 59.633 54.545 0.00 0.00 42.93 3.51
2897 5188 1.343075 CCCCACCTCTTAGCACCTAGA 60.343 57.143 0.00 0.00 0.00 2.43
2898 5189 1.123928 CCCCACCTCTTAGCACCTAG 58.876 60.000 0.00 0.00 0.00 3.02
2900 5191 1.616628 CCCCCACCTCTTAGCACCT 60.617 63.158 0.00 0.00 0.00 4.00
2901 5192 2.998949 CCCCCACCTCTTAGCACC 59.001 66.667 0.00 0.00 0.00 5.01
2915 5206 1.419387 CATGAAGATCTGAGGTCCCCC 59.581 57.143 0.00 0.00 0.00 5.40
2916 5207 2.103941 GTCATGAAGATCTGAGGTCCCC 59.896 54.545 0.00 0.00 0.00 4.81
2917 5208 2.223923 CGTCATGAAGATCTGAGGTCCC 60.224 54.545 2.01 0.00 0.00 4.46
2919 5210 3.701241 GACGTCATGAAGATCTGAGGTC 58.299 50.000 15.90 15.43 44.81 3.85
2920 5211 3.360867 AGACGTCATGAAGATCTGAGGT 58.639 45.455 19.50 1.58 41.65 3.85
2921 5212 5.009510 ACATAGACGTCATGAAGATCTGAGG 59.990 44.000 24.96 9.90 34.35 3.86
2922 5213 6.070897 ACATAGACGTCATGAAGATCTGAG 57.929 41.667 24.96 12.04 0.00 3.35
2923 5214 6.319911 AGAACATAGACGTCATGAAGATCTGA 59.680 38.462 24.96 4.90 0.00 3.27
2925 5216 6.707440 AGAACATAGACGTCATGAAGATCT 57.293 37.500 24.96 14.97 0.00 2.75
2926 5217 6.141527 CGAAGAACATAGACGTCATGAAGATC 59.858 42.308 24.96 18.17 0.00 2.75
2928 5219 5.106277 ACGAAGAACATAGACGTCATGAAGA 60.106 40.000 24.96 4.45 31.69 2.87
2929 5220 5.096169 ACGAAGAACATAGACGTCATGAAG 58.904 41.667 24.96 7.13 31.69 3.02
2930 5221 5.055642 ACGAAGAACATAGACGTCATGAA 57.944 39.130 24.96 8.26 31.69 2.57
2936 5227 3.231965 CGTTGACGAAGAACATAGACGT 58.768 45.455 0.00 0.00 43.02 4.34
2937 5228 3.231965 ACGTTGACGAAGAACATAGACG 58.768 45.455 10.87 0.00 43.02 4.18
2939 5230 4.761235 AGACGTTGACGAAGAACATAGA 57.239 40.909 10.87 0.00 43.02 1.98
2941 5232 5.179929 TCACTAGACGTTGACGAAGAACATA 59.820 40.000 10.87 0.00 43.02 2.29
2942 5233 4.023450 TCACTAGACGTTGACGAAGAACAT 60.023 41.667 10.87 0.00 43.02 2.71
2944 5235 3.881795 TCACTAGACGTTGACGAAGAAC 58.118 45.455 10.87 0.00 43.02 3.01
2946 5237 3.749609 TGATCACTAGACGTTGACGAAGA 59.250 43.478 10.87 0.00 43.02 2.87
2947 5238 4.079665 TGATCACTAGACGTTGACGAAG 57.920 45.455 10.87 7.07 43.02 3.79
2948 5239 4.155280 TGATGATCACTAGACGTTGACGAA 59.845 41.667 10.87 0.00 43.02 3.85
2949 5240 3.687698 TGATGATCACTAGACGTTGACGA 59.312 43.478 10.87 0.00 43.02 4.20
2950 5241 4.016113 TGATGATCACTAGACGTTGACG 57.984 45.455 0.00 1.41 46.33 4.35
2951 5242 6.730175 ACTATGATGATCACTAGACGTTGAC 58.270 40.000 14.51 0.00 0.00 3.18
2953 5244 6.964908 AGACTATGATGATCACTAGACGTTG 58.035 40.000 14.51 0.00 0.00 4.10
2954 5245 7.067615 ACAAGACTATGATGATCACTAGACGTT 59.932 37.037 14.51 6.02 0.00 3.99
2955 5246 6.544197 ACAAGACTATGATGATCACTAGACGT 59.456 38.462 14.51 0.00 0.00 4.34
2956 5247 6.855403 CACAAGACTATGATGATCACTAGACG 59.145 42.308 14.51 0.00 0.00 4.18
2957 5248 7.935520 TCACAAGACTATGATGATCACTAGAC 58.064 38.462 14.51 10.35 0.00 2.59
2959 5250 8.164058 TCTCACAAGACTATGATGATCACTAG 57.836 38.462 0.00 4.09 0.00 2.57
2962 5253 9.755804 TTATTCTCACAAGACTATGATGATCAC 57.244 33.333 0.00 0.00 0.00 3.06
2972 5263 9.877178 GAGAGGAAATTTATTCTCACAAGACTA 57.123 33.333 19.21 0.00 36.83 2.59
2973 5264 7.547370 CGAGAGGAAATTTATTCTCACAAGACT 59.453 37.037 21.83 3.31 36.68 3.24
2976 5267 7.602517 ACGAGAGGAAATTTATTCTCACAAG 57.397 36.000 21.83 13.00 36.68 3.16
2977 5268 7.878127 AGAACGAGAGGAAATTTATTCTCACAA 59.122 33.333 21.83 0.00 36.68 3.33
2978 5269 7.386851 AGAACGAGAGGAAATTTATTCTCACA 58.613 34.615 21.83 0.00 36.68 3.58
2979 5270 7.835634 AGAACGAGAGGAAATTTATTCTCAC 57.164 36.000 21.83 15.33 36.68 3.51
2980 5271 8.848474 AAAGAACGAGAGGAAATTTATTCTCA 57.152 30.769 21.83 0.00 36.68 3.27
2981 5272 9.548208 CAAAAGAACGAGAGGAAATTTATTCTC 57.452 33.333 16.16 16.16 34.21 2.87
2983 5274 7.273598 GCCAAAAGAACGAGAGGAAATTTATTC 59.726 37.037 0.00 0.00 0.00 1.75
2985 5276 6.621613 GCCAAAAGAACGAGAGGAAATTTAT 58.378 36.000 0.00 0.00 0.00 1.40
2987 5278 4.556699 CGCCAAAAGAACGAGAGGAAATTT 60.557 41.667 0.00 0.00 0.00 1.82
2988 5279 3.058224 CGCCAAAAGAACGAGAGGAAATT 60.058 43.478 0.00 0.00 0.00 1.82
2992 5283 0.320421 CCGCCAAAAGAACGAGAGGA 60.320 55.000 0.00 0.00 0.00 3.71
2993 5284 0.602905 ACCGCCAAAAGAACGAGAGG 60.603 55.000 0.00 0.00 0.00 3.69
2994 5285 0.512952 CACCGCCAAAAGAACGAGAG 59.487 55.000 0.00 0.00 0.00 3.20
2995 5286 1.503818 GCACCGCCAAAAGAACGAGA 61.504 55.000 0.00 0.00 0.00 4.04
2996 5287 1.082104 GCACCGCCAAAAGAACGAG 60.082 57.895 0.00 0.00 0.00 4.18
2997 5288 3.027292 GCACCGCCAAAAGAACGA 58.973 55.556 0.00 0.00 0.00 3.85
3008 5299 0.811616 CTCTAACCTCATGGCACCGC 60.812 60.000 0.00 0.00 36.63 5.68
3009 5300 0.824109 TCTCTAACCTCATGGCACCG 59.176 55.000 0.00 0.00 36.63 4.94
3010 5301 1.834263 ACTCTCTAACCTCATGGCACC 59.166 52.381 0.00 0.00 36.63 5.01
3011 5302 3.618690 AACTCTCTAACCTCATGGCAC 57.381 47.619 0.00 0.00 36.63 5.01
3012 5303 4.287067 AGAAAACTCTCTAACCTCATGGCA 59.713 41.667 0.00 0.00 36.63 4.92
3013 5304 4.633565 CAGAAAACTCTCTAACCTCATGGC 59.366 45.833 0.00 0.00 36.63 4.40
3014 5305 5.799213 ACAGAAAACTCTCTAACCTCATGG 58.201 41.667 0.00 0.00 39.83 3.66
3015 5306 5.872070 GGACAGAAAACTCTCTAACCTCATG 59.128 44.000 0.00 0.00 0.00 3.07
3019 5310 5.011227 GTGAGGACAGAAAACTCTCTAACCT 59.989 44.000 0.00 0.00 34.76 3.50
3020 5311 5.221461 TGTGAGGACAGAAAACTCTCTAACC 60.221 44.000 0.00 0.00 32.58 2.85
3021 5312 5.844004 TGTGAGGACAGAAAACTCTCTAAC 58.156 41.667 0.00 0.00 32.58 2.34
3035 5326 0.251608 TCCACGGATCTGTGAGGACA 60.252 55.000 32.02 10.40 42.55 4.02
3036 5327 1.067821 GATCCACGGATCTGTGAGGAC 59.932 57.143 32.02 17.36 45.42 3.85
3037 5328 1.403814 GATCCACGGATCTGTGAGGA 58.596 55.000 32.02 22.99 45.42 3.71
3038 5329 3.976339 GATCCACGGATCTGTGAGG 57.024 57.895 32.02 18.74 45.42 3.86
3046 5337 5.815233 ATAAACTCATCAGATCCACGGAT 57.185 39.130 0.00 0.00 37.59 4.18
3047 5338 6.918067 ATATAAACTCATCAGATCCACGGA 57.082 37.500 0.00 0.00 0.00 4.69
3048 5339 6.931281 ACAATATAAACTCATCAGATCCACGG 59.069 38.462 0.00 0.00 0.00 4.94
3049 5340 7.953158 ACAATATAAACTCATCAGATCCACG 57.047 36.000 0.00 0.00 0.00 4.94
3050 5341 9.113838 ACAACAATATAAACTCATCAGATCCAC 57.886 33.333 0.00 0.00 0.00 4.02
3051 5342 9.112725 CACAACAATATAAACTCATCAGATCCA 57.887 33.333 0.00 0.00 0.00 3.41
3052 5343 9.113838 ACACAACAATATAAACTCATCAGATCC 57.886 33.333 0.00 0.00 0.00 3.36
3055 5346 9.500785 TTGACACAACAATATAAACTCATCAGA 57.499 29.630 0.00 0.00 0.00 3.27
3086 5377 7.442656 TCCACAAAGAGTTAAACCAACAAAAA 58.557 30.769 0.00 0.00 39.81 1.94
3088 5379 6.350612 CCTCCACAAAGAGTTAAACCAACAAA 60.351 38.462 0.00 0.00 39.81 2.83
3089 5380 5.126384 CCTCCACAAAGAGTTAAACCAACAA 59.874 40.000 0.00 0.00 39.81 2.83
3090 5381 4.642885 CCTCCACAAAGAGTTAAACCAACA 59.357 41.667 0.00 0.00 39.81 3.33
3091 5382 4.643334 ACCTCCACAAAGAGTTAAACCAAC 59.357 41.667 0.00 0.00 37.41 3.77
3093 5384 4.080243 TCACCTCCACAAAGAGTTAAACCA 60.080 41.667 0.00 0.00 31.53 3.67
3094 5385 4.457466 TCACCTCCACAAAGAGTTAAACC 58.543 43.478 0.00 0.00 31.53 3.27
3095 5386 6.445357 TTTCACCTCCACAAAGAGTTAAAC 57.555 37.500 0.00 0.00 31.53 2.01
3096 5387 7.060421 AGATTTCACCTCCACAAAGAGTTAAA 58.940 34.615 0.00 0.00 31.53 1.52
3097 5388 6.601332 AGATTTCACCTCCACAAAGAGTTAA 58.399 36.000 0.00 0.00 31.53 2.01
3098 5389 6.187727 AGATTTCACCTCCACAAAGAGTTA 57.812 37.500 0.00 0.00 31.53 2.24
3100 5391 4.713792 AGATTTCACCTCCACAAAGAGT 57.286 40.909 0.00 0.00 31.53 3.24
3101 5392 6.396829 AAAAGATTTCACCTCCACAAAGAG 57.603 37.500 0.00 0.00 0.00 2.85
3102 5393 7.094805 CGATAAAAGATTTCACCTCCACAAAGA 60.095 37.037 0.00 0.00 0.00 2.52
3103 5394 7.023575 CGATAAAAGATTTCACCTCCACAAAG 58.976 38.462 0.00 0.00 0.00 2.77
3106 5397 5.642063 GTCGATAAAAGATTTCACCTCCACA 59.358 40.000 0.00 0.00 0.00 4.17
3107 5398 5.642063 TGTCGATAAAAGATTTCACCTCCAC 59.358 40.000 0.00 0.00 0.00 4.02
3108 5399 5.642063 GTGTCGATAAAAGATTTCACCTCCA 59.358 40.000 0.00 0.00 0.00 3.86
3109 5400 5.064834 GGTGTCGATAAAAGATTTCACCTCC 59.935 44.000 7.13 0.00 40.30 4.30
3110 5401 5.642063 TGGTGTCGATAAAAGATTTCACCTC 59.358 40.000 13.54 0.00 42.80 3.85
3112 5403 5.873179 TGGTGTCGATAAAAGATTTCACC 57.127 39.130 7.38 7.38 42.72 4.02
3113 5404 6.128007 ACCATGGTGTCGATAAAAGATTTCAC 60.128 38.462 18.99 0.00 0.00 3.18
3114 5405 5.943416 ACCATGGTGTCGATAAAAGATTTCA 59.057 36.000 18.99 0.00 0.00 2.69
3115 5406 6.093495 TCACCATGGTGTCGATAAAAGATTTC 59.907 38.462 37.49 0.00 45.55 2.17
3116 5407 5.943416 TCACCATGGTGTCGATAAAAGATTT 59.057 36.000 37.49 0.00 45.55 2.17
3117 5408 5.496556 TCACCATGGTGTCGATAAAAGATT 58.503 37.500 37.49 0.00 45.55 2.40
3118 5409 5.097742 TCACCATGGTGTCGATAAAAGAT 57.902 39.130 37.49 0.00 45.55 2.40
3119 5410 4.545208 TCACCATGGTGTCGATAAAAGA 57.455 40.909 37.49 16.74 45.55 2.52
3120 5411 4.935205 TCTTCACCATGGTGTCGATAAAAG 59.065 41.667 37.49 30.10 45.55 2.27
3121 5412 4.900684 TCTTCACCATGGTGTCGATAAAA 58.099 39.130 37.49 23.90 45.55 1.52
3122 5413 4.545208 TCTTCACCATGGTGTCGATAAA 57.455 40.909 37.49 24.53 45.55 1.40
3123 5414 4.753516 ATCTTCACCATGGTGTCGATAA 57.246 40.909 37.49 25.16 45.55 1.75
3124 5415 6.719829 ACTATATCTTCACCATGGTGTCGATA 59.280 38.462 34.39 34.39 45.55 2.92
3125 5416 4.963318 ATATCTTCACCATGGTGTCGAT 57.037 40.909 37.49 34.92 45.55 3.59
3127 5418 4.984785 CACTATATCTTCACCATGGTGTCG 59.015 45.833 37.49 29.06 45.55 4.35
3128 5419 6.161855 TCACTATATCTTCACCATGGTGTC 57.838 41.667 37.49 0.00 45.55 3.67
3130 5421 6.367149 CGAATCACTATATCTTCACCATGGTG 59.633 42.308 35.00 35.00 46.64 4.17
3132 5423 6.587990 GTCGAATCACTATATCTTCACCATGG 59.412 42.308 11.19 11.19 0.00 3.66
3133 5424 6.306596 CGTCGAATCACTATATCTTCACCATG 59.693 42.308 0.00 0.00 0.00 3.66
3134 5425 6.382608 CGTCGAATCACTATATCTTCACCAT 58.617 40.000 0.00 0.00 0.00 3.55
3137 5428 5.852229 GTCCGTCGAATCACTATATCTTCAC 59.148 44.000 0.00 0.00 0.00 3.18
3139 5430 6.081049 CAGTCCGTCGAATCACTATATCTTC 58.919 44.000 0.00 0.00 0.00 2.87
3140 5431 5.563085 GCAGTCCGTCGAATCACTATATCTT 60.563 44.000 0.00 0.00 0.00 2.40
3142 5433 4.159857 GCAGTCCGTCGAATCACTATATC 58.840 47.826 0.00 0.00 0.00 1.63
3143 5434 3.568430 TGCAGTCCGTCGAATCACTATAT 59.432 43.478 0.00 0.00 0.00 0.86
3144 5435 2.946990 TGCAGTCCGTCGAATCACTATA 59.053 45.455 0.00 0.00 0.00 1.31
3145 5436 1.749063 TGCAGTCCGTCGAATCACTAT 59.251 47.619 0.00 0.00 0.00 2.12
3147 5438 0.388649 GTGCAGTCCGTCGAATCACT 60.389 55.000 0.00 0.00 0.00 3.41
3148 5439 0.388649 AGTGCAGTCCGTCGAATCAC 60.389 55.000 0.00 0.00 0.00 3.06
3149 5440 0.317160 AAGTGCAGTCCGTCGAATCA 59.683 50.000 0.00 0.00 0.00 2.57
3150 5441 0.992802 GAAGTGCAGTCCGTCGAATC 59.007 55.000 0.00 0.00 0.00 2.52
3152 5443 1.199327 CTAGAAGTGCAGTCCGTCGAA 59.801 52.381 0.00 0.00 0.00 3.71
3153 5444 0.803117 CTAGAAGTGCAGTCCGTCGA 59.197 55.000 0.00 0.00 0.00 4.20
3154 5445 0.179161 CCTAGAAGTGCAGTCCGTCG 60.179 60.000 0.00 0.00 0.00 5.12
3155 5446 0.889306 ACCTAGAAGTGCAGTCCGTC 59.111 55.000 0.00 0.00 0.00 4.79
3157 5448 0.888619 TCACCTAGAAGTGCAGTCCG 59.111 55.000 0.00 0.00 37.68 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.