Multiple sequence alignment - TraesCS2D01G162300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G162300 chr2D 100.000 2603 0 0 1 2603 106871696 106869094 0.000000e+00 4807.0
1 TraesCS2D01G162300 chr2D 85.984 849 65 21 803 1610 106650612 106649777 0.000000e+00 859.0
2 TraesCS2D01G162300 chr2D 89.764 127 7 4 1729 1850 106649730 106649605 9.640000e-35 158.0
3 TraesCS2D01G162300 chr2D 84.091 132 16 2 304 435 106653334 106653208 3.520000e-24 122.0
4 TraesCS2D01G162300 chr2D 98.276 58 0 1 2547 2603 112109216 112109159 1.650000e-17 100.0
5 TraesCS2D01G162300 chr2D 98.276 58 0 1 2547 2603 579149650 579149593 1.650000e-17 100.0
6 TraesCS2D01G162300 chr2A 88.860 1939 103 40 1 1884 103141661 103139781 0.000000e+00 2279.0
7 TraesCS2D01G162300 chr2A 86.132 923 65 37 803 1676 103113203 103112295 0.000000e+00 937.0
8 TraesCS2D01G162300 chr2A 91.873 283 13 6 2127 2400 103139458 103139177 1.130000e-103 387.0
9 TraesCS2D01G162300 chr2A 90.110 182 8 5 1954 2130 103139746 103139570 7.250000e-56 228.0
10 TraesCS2D01G162300 chr2A 91.057 123 10 1 1729 1850 103112280 103112158 5.760000e-37 165.0
11 TraesCS2D01G162300 chr2B 93.033 1378 62 13 523 1877 157042148 157040782 0.000000e+00 1982.0
12 TraesCS2D01G162300 chr2B 86.201 1087 74 45 803 1856 156607110 156606067 0.000000e+00 1107.0
13 TraesCS2D01G162300 chr2B 90.495 505 23 8 1966 2457 157040641 157040149 0.000000e+00 643.0
14 TraesCS2D01G162300 chr2B 91.270 252 13 7 273 518 157042374 157042126 4.150000e-88 335.0
15 TraesCS2D01G162300 chr2B 93.182 220 11 3 25 243 157042802 157042586 1.160000e-83 320.0
16 TraesCS2D01G162300 chr2B 98.246 57 1 0 2547 2603 391786318 391786262 1.650000e-17 100.0
17 TraesCS2D01G162300 chr7B 96.875 64 1 1 2540 2603 693157756 693157694 3.540000e-19 106.0
18 TraesCS2D01G162300 chr7A 98.246 57 1 0 2547 2603 506972716 506972772 1.650000e-17 100.0
19 TraesCS2D01G162300 chr7A 96.610 59 0 1 2545 2603 22105900 22105844 2.130000e-16 97.1
20 TraesCS2D01G162300 chr1D 94.030 67 2 2 2537 2603 204999022 204998958 1.650000e-17 100.0
21 TraesCS2D01G162300 chr3D 98.246 57 0 1 2547 2603 278783166 278783221 5.930000e-17 99.0
22 TraesCS2D01G162300 chr3B 93.750 64 2 2 2542 2603 677945398 677945335 7.670000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G162300 chr2D 106869094 106871696 2602 True 4807.000000 4807 100.0000 1 2603 1 chr2D.!!$R1 2602
1 TraesCS2D01G162300 chr2D 106649605 106653334 3729 True 379.666667 859 86.6130 304 1850 3 chr2D.!!$R4 1546
2 TraesCS2D01G162300 chr2A 103139177 103141661 2484 True 964.666667 2279 90.2810 1 2400 3 chr2A.!!$R2 2399
3 TraesCS2D01G162300 chr2A 103112158 103113203 1045 True 551.000000 937 88.5945 803 1850 2 chr2A.!!$R1 1047
4 TraesCS2D01G162300 chr2B 156606067 156607110 1043 True 1107.000000 1107 86.2010 803 1856 1 chr2B.!!$R1 1053
5 TraesCS2D01G162300 chr2B 157040149 157042802 2653 True 820.000000 1982 91.9950 25 2457 4 chr2B.!!$R3 2432

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
518 1069 0.871057 CACACACACACACACACACA 59.129 50.0 0.0 0.0 0.0 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1696 4250 0.329931 AAGAACACCACACCACACCA 59.67 50.0 0.0 0.0 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 44 1.267806 ACAGCTTGCAAACCGATCTTG 59.732 47.619 0.00 0.00 0.00 3.02
136 145 9.677567 GTTCTACAAGCATGTAAAATTTCAAGA 57.322 29.630 3.08 0.00 41.36 3.02
181 190 9.554724 AGCAAGTATGTATGATTTTTGTTTACG 57.445 29.630 0.00 0.00 0.00 3.18
243 252 6.912203 TTGTTTTGACTTAACGACATCTCA 57.088 33.333 0.00 0.00 0.00 3.27
244 253 6.281848 TGTTTTGACTTAACGACATCTCAC 57.718 37.500 0.00 0.00 0.00 3.51
245 254 5.813157 TGTTTTGACTTAACGACATCTCACA 59.187 36.000 0.00 0.00 0.00 3.58
247 256 7.654116 TGTTTTGACTTAACGACATCTCACATA 59.346 33.333 0.00 0.00 0.00 2.29
250 259 7.755582 TGACTTAACGACATCTCACATAATG 57.244 36.000 0.00 0.00 0.00 1.90
276 467 5.559427 AATGTGGGTTTTGAACTTTTTGC 57.441 34.783 0.00 0.00 0.00 3.68
313 504 3.829948 CACTAATAGTGTCCGAACGTGT 58.170 45.455 12.04 0.00 41.19 4.49
355 546 3.820467 TGTAACTTGGCATCAACTTCCTG 59.180 43.478 0.00 0.00 0.00 3.86
357 548 1.145738 ACTTGGCATCAACTTCCTGGT 59.854 47.619 0.00 0.00 0.00 4.00
392 583 4.730487 GCATGGAGCCTTCACACT 57.270 55.556 0.00 0.00 37.23 3.55
515 1066 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
517 1068 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
518 1069 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
521 1072 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
523 1074 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
524 1075 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
692 1795 7.171678 GGTCCATTGTCCTCTTATTATTCTTCG 59.828 40.741 0.00 0.00 0.00 3.79
825 3262 1.203994 CAATGCAAAGGGAGCTTCCTG 59.796 52.381 16.53 4.89 37.20 3.86
859 3296 7.054124 GGACTTGTTTACTCCATGATATTCCA 58.946 38.462 0.00 0.00 0.00 3.53
991 3465 1.068474 CGGCACCAACGAACTCTAAG 58.932 55.000 0.00 0.00 0.00 2.18
1536 4040 0.383590 CCATGATCTCGTCGAGCTGT 59.616 55.000 17.61 5.90 0.00 4.40
1578 4082 1.410004 ACCTGTTCCAGTTCGTCAGA 58.590 50.000 0.00 0.00 0.00 3.27
1761 4321 2.747686 GCGAAGAGTTGGGGGTGA 59.252 61.111 0.00 0.00 0.00 4.02
1762 4322 1.376037 GCGAAGAGTTGGGGGTGAG 60.376 63.158 0.00 0.00 0.00 3.51
1765 4325 1.827399 GAAGAGTTGGGGGTGAGCGA 61.827 60.000 0.00 0.00 0.00 4.93
1884 4444 6.239908 TGCCTTGATTATATACGTGCATTG 57.760 37.500 0.00 0.00 0.00 2.82
1886 4446 5.106555 GCCTTGATTATATACGTGCATTGCT 60.107 40.000 10.49 0.00 0.00 3.91
1887 4447 6.568462 GCCTTGATTATATACGTGCATTGCTT 60.568 38.462 10.49 0.00 0.00 3.91
1888 4448 7.017645 CCTTGATTATATACGTGCATTGCTTC 58.982 38.462 10.49 2.54 0.00 3.86
1889 4449 6.480524 TGATTATATACGTGCATTGCTTCC 57.519 37.500 10.49 0.00 0.00 3.46
1890 4450 5.994668 TGATTATATACGTGCATTGCTTCCA 59.005 36.000 10.49 0.00 0.00 3.53
1891 4451 6.484977 TGATTATATACGTGCATTGCTTCCAA 59.515 34.615 10.49 0.00 35.01 3.53
1893 4453 3.932545 ATACGTGCATTGCTTCCAAAA 57.067 38.095 10.49 0.00 34.05 2.44
1897 4464 1.994779 GTGCATTGCTTCCAAAATCGG 59.005 47.619 10.49 0.00 34.05 4.18
1903 4470 3.071874 TGCTTCCAAAATCGGATCTGT 57.928 42.857 0.42 0.00 34.19 3.41
1906 4473 3.311048 GCTTCCAAAATCGGATCTGTCTC 59.689 47.826 0.42 0.00 34.19 3.36
1920 4487 2.486592 TCTGTCTCTGCGAAATCGTGTA 59.513 45.455 4.59 0.00 42.22 2.90
2015 4627 1.684386 CTGCTGCCCGGAGAATCTCT 61.684 60.000 10.38 0.00 31.85 3.10
2018 4630 0.388659 CTGCCCGGAGAATCTCTCTG 59.611 60.000 10.38 7.13 46.81 3.35
2072 4688 0.852777 CGACAACTCGACAACACAGG 59.147 55.000 0.00 0.00 43.06 4.00
2137 4867 1.407434 CTGCGGTTGTACGTACGAAA 58.593 50.000 24.41 10.34 35.98 3.46
2148 4878 6.168164 TGTACGTACGAAATGGGAAAATTC 57.832 37.500 24.41 0.00 0.00 2.17
2154 4884 4.167554 CGAAATGGGAAAATTCGGTGAA 57.832 40.909 0.00 0.00 41.52 3.18
2285 5030 4.802051 GATGGAGGCCTTGGCGCA 62.802 66.667 6.77 0.00 0.00 6.09
2361 5107 2.284232 CGTTGACACATGCGTATACGTG 60.284 50.000 25.04 18.54 42.22 4.49
2395 5141 2.357517 GTGACTGCGGAGTGGGTG 60.358 66.667 16.62 0.00 30.16 4.61
2441 5188 3.187700 GTTGTCGCCTTATTCTCATCGT 58.812 45.455 0.00 0.00 0.00 3.73
2457 5204 0.744874 TCGTGTCCGGGAATCTGATC 59.255 55.000 0.00 0.00 33.95 2.92
2458 5205 0.249489 CGTGTCCGGGAATCTGATCC 60.249 60.000 0.00 0.00 38.86 3.36
2465 5212 2.528134 GGAATCTGATCCCCGGACA 58.472 57.895 0.73 0.00 33.05 4.02
2466 5213 1.059913 GGAATCTGATCCCCGGACAT 58.940 55.000 0.73 0.00 33.05 3.06
2467 5214 2.257207 GGAATCTGATCCCCGGACATA 58.743 52.381 0.73 0.00 33.05 2.29
2468 5215 2.637872 GGAATCTGATCCCCGGACATAA 59.362 50.000 0.73 0.00 33.05 1.90
2469 5216 3.557264 GGAATCTGATCCCCGGACATAAC 60.557 52.174 0.73 0.00 33.05 1.89
2470 5217 1.420430 TCTGATCCCCGGACATAACC 58.580 55.000 0.73 0.00 0.00 2.85
2471 5218 0.396811 CTGATCCCCGGACATAACCC 59.603 60.000 0.73 0.00 0.00 4.11
2472 5219 1.370064 GATCCCCGGACATAACCCG 59.630 63.158 0.73 0.00 46.10 5.28
2479 5226 2.894763 CGGACATAACCCGGACATAA 57.105 50.000 0.73 0.00 43.05 1.90
2480 5227 3.396260 CGGACATAACCCGGACATAAT 57.604 47.619 0.73 0.00 43.05 1.28
2481 5228 4.524316 CGGACATAACCCGGACATAATA 57.476 45.455 0.73 0.00 43.05 0.98
2482 5229 4.885413 CGGACATAACCCGGACATAATAA 58.115 43.478 0.73 0.00 43.05 1.40
2483 5230 4.687483 CGGACATAACCCGGACATAATAAC 59.313 45.833 0.73 0.00 43.05 1.89
2484 5231 5.613329 GGACATAACCCGGACATAATAACA 58.387 41.667 0.73 0.00 0.00 2.41
2485 5232 5.467735 GGACATAACCCGGACATAATAACAC 59.532 44.000 0.73 0.00 0.00 3.32
2486 5233 5.370679 ACATAACCCGGACATAATAACACC 58.629 41.667 0.73 0.00 0.00 4.16
2487 5234 5.104444 ACATAACCCGGACATAATAACACCA 60.104 40.000 0.73 0.00 0.00 4.17
2488 5235 4.304048 AACCCGGACATAATAACACCAA 57.696 40.909 0.73 0.00 0.00 3.67
2489 5236 4.304048 ACCCGGACATAATAACACCAAA 57.696 40.909 0.73 0.00 0.00 3.28
2490 5237 4.011698 ACCCGGACATAATAACACCAAAC 58.988 43.478 0.73 0.00 0.00 2.93
2491 5238 4.263594 ACCCGGACATAATAACACCAAACT 60.264 41.667 0.73 0.00 0.00 2.66
2492 5239 4.703093 CCCGGACATAATAACACCAAACTT 59.297 41.667 0.73 0.00 0.00 2.66
2493 5240 5.392595 CCCGGACATAATAACACCAAACTTG 60.393 44.000 0.73 0.00 0.00 3.16
2494 5241 5.413213 CCGGACATAATAACACCAAACTTGA 59.587 40.000 0.00 0.00 0.00 3.02
2495 5242 6.072397 CCGGACATAATAACACCAAACTTGAA 60.072 38.462 0.00 0.00 0.00 2.69
2496 5243 7.364200 CGGACATAATAACACCAAACTTGAAA 58.636 34.615 0.00 0.00 0.00 2.69
2497 5244 8.026607 CGGACATAATAACACCAAACTTGAAAT 58.973 33.333 0.00 0.00 0.00 2.17
2548 5295 8.816640 CTTTTGTCCAAAGTATAGTTTGCAAT 57.183 30.769 22.54 0.00 37.67 3.56
2549 5296 9.906660 CTTTTGTCCAAAGTATAGTTTGCAATA 57.093 29.630 22.54 16.33 37.67 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.281525 AGCTGTTTTTGCTTGCAAAATG 57.718 36.364 26.99 21.07 37.52 2.32
18 20 2.663826 TCGGTTTGCAAGCTGTTTTT 57.336 40.000 19.96 0.00 0.00 1.94
34 36 6.393990 CCTCCTTCTCATAATACAAGATCGG 58.606 44.000 0.00 0.00 0.00 4.18
42 44 7.842887 AACTACTCCCTCCTTCTCATAATAC 57.157 40.000 0.00 0.00 0.00 1.89
82 91 9.838339 CCATCTCCTAACATACTGTATTTCTTT 57.162 33.333 0.00 0.00 0.00 2.52
83 92 8.993424 ACCATCTCCTAACATACTGTATTTCTT 58.007 33.333 0.00 0.00 0.00 2.52
84 93 8.424918 CACCATCTCCTAACATACTGTATTTCT 58.575 37.037 0.00 0.00 0.00 2.52
85 94 8.204836 ACACCATCTCCTAACATACTGTATTTC 58.795 37.037 0.00 0.00 0.00 2.17
243 252 7.060383 TCAAAACCCACATTTCACATTATGT 57.940 32.000 0.00 0.00 35.45 2.29
244 253 7.656948 AGTTCAAAACCCACATTTCACATTATG 59.343 33.333 0.00 0.00 0.00 1.90
245 254 7.734942 AGTTCAAAACCCACATTTCACATTAT 58.265 30.769 0.00 0.00 0.00 1.28
247 256 5.988287 AGTTCAAAACCCACATTTCACATT 58.012 33.333 0.00 0.00 0.00 2.71
250 259 6.735678 AAAAGTTCAAAACCCACATTTCAC 57.264 33.333 0.00 0.00 0.00 3.18
252 261 6.027131 GCAAAAAGTTCAAAACCCACATTTC 58.973 36.000 0.00 0.00 0.00 2.17
253 262 5.474876 TGCAAAAAGTTCAAAACCCACATTT 59.525 32.000 0.00 0.00 0.00 2.32
306 497 5.684184 GGTAACTTCATGGAAAAACACGTTC 59.316 40.000 0.00 0.00 0.00 3.95
392 583 4.326826 ACAAAATTGGCTCTTGATCGAGA 58.673 39.130 12.27 12.27 32.74 4.04
515 1066 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
517 1068 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
518 1069 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
521 1072 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
523 1074 0.167908 GGTGTGTGTGTGTGTGTGTG 59.832 55.000 0.00 0.00 0.00 3.82
524 1075 0.250510 TGGTGTGTGTGTGTGTGTGT 60.251 50.000 0.00 0.00 0.00 3.72
692 1795 5.719563 TCAGGAAAATAAATGGAAAGGGGTC 59.280 40.000 0.00 0.00 0.00 4.46
825 3262 0.037975 TAAACAAGTCCGGTCGAGGC 60.038 55.000 0.00 0.00 0.00 4.70
991 3465 1.659954 CGTCTGCCATCGCTAGAGC 60.660 63.158 0.00 0.00 35.36 4.09
1248 3743 2.477176 CCTCAGCTCCTCGTCCTCG 61.477 68.421 0.00 0.00 38.55 4.63
1696 4250 0.329931 AAGAACACCACACCACACCA 59.670 50.000 0.00 0.00 0.00 4.17
1697 4251 1.404035 GAAAGAACACCACACCACACC 59.596 52.381 0.00 0.00 0.00 4.16
1698 4252 2.365582 AGAAAGAACACCACACCACAC 58.634 47.619 0.00 0.00 0.00 3.82
1699 4253 2.752354 CAAGAAAGAACACCACACCACA 59.248 45.455 0.00 0.00 0.00 4.17
1700 4254 2.479560 GCAAGAAAGAACACCACACCAC 60.480 50.000 0.00 0.00 0.00 4.16
1761 4321 2.869233 AATTTGTTGCACAGTTCGCT 57.131 40.000 0.00 0.00 0.00 4.93
1762 4322 3.121828 CGTTAATTTGTTGCACAGTTCGC 60.122 43.478 0.00 0.00 0.00 4.70
1765 4325 3.775202 TGCGTTAATTTGTTGCACAGTT 58.225 36.364 0.00 0.00 0.00 3.16
1884 4444 3.274288 AGACAGATCCGATTTTGGAAGC 58.726 45.455 0.00 0.00 42.46 3.86
1886 4446 4.507710 CAGAGACAGATCCGATTTTGGAA 58.492 43.478 0.00 0.00 42.46 3.53
1887 4447 3.679917 GCAGAGACAGATCCGATTTTGGA 60.680 47.826 0.00 0.00 43.58 3.53
1888 4448 2.611292 GCAGAGACAGATCCGATTTTGG 59.389 50.000 0.00 0.00 0.00 3.28
1889 4449 2.283617 CGCAGAGACAGATCCGATTTTG 59.716 50.000 0.00 0.00 0.00 2.44
1890 4450 2.166459 TCGCAGAGACAGATCCGATTTT 59.834 45.455 0.00 0.00 0.00 1.82
1891 4451 1.751351 TCGCAGAGACAGATCCGATTT 59.249 47.619 0.00 0.00 0.00 2.17
1893 4453 1.393603 TTCGCAGAGACAGATCCGAT 58.606 50.000 0.00 0.00 38.43 4.18
1897 4464 2.533535 CACGATTTCGCAGAGACAGATC 59.466 50.000 0.00 0.00 44.43 2.75
1926 4493 2.318908 TGAACTGCCAGCCTTGAATTT 58.681 42.857 0.00 0.00 0.00 1.82
1927 4494 1.999648 TGAACTGCCAGCCTTGAATT 58.000 45.000 0.00 0.00 0.00 2.17
1928 4495 1.999648 TTGAACTGCCAGCCTTGAAT 58.000 45.000 0.00 0.00 0.00 2.57
1929 4496 1.408702 GTTTGAACTGCCAGCCTTGAA 59.591 47.619 0.00 0.00 0.00 2.69
1930 4497 1.032014 GTTTGAACTGCCAGCCTTGA 58.968 50.000 0.00 0.00 0.00 3.02
1931 4498 1.035139 AGTTTGAACTGCCAGCCTTG 58.965 50.000 0.00 0.00 37.98 3.61
1932 4499 1.410153 CAAGTTTGAACTGCCAGCCTT 59.590 47.619 0.00 0.00 39.66 4.35
1933 4500 1.035139 CAAGTTTGAACTGCCAGCCT 58.965 50.000 0.00 0.00 39.66 4.58
1934 4501 1.000938 CTCAAGTTTGAACTGCCAGCC 60.001 52.381 0.00 0.00 39.66 4.85
1935 4502 1.949525 TCTCAAGTTTGAACTGCCAGC 59.050 47.619 0.00 0.00 39.66 4.85
2007 4619 3.033184 CCAGAAGGAGCAGAGAGATTCT 58.967 50.000 0.00 0.00 36.89 2.40
2015 4627 3.393970 CGGGCCAGAAGGAGCAGA 61.394 66.667 4.39 0.00 36.89 4.26
2018 4630 2.110006 GATCGGGCCAGAAGGAGC 59.890 66.667 10.42 0.00 36.89 4.70
2066 4682 1.228245 ACGAATTGGCAGCCTGTGT 60.228 52.632 14.15 1.16 0.00 3.72
2072 4688 2.486966 GCAGGACGAATTGGCAGC 59.513 61.111 0.00 0.00 0.00 5.25
2137 4867 4.022329 GTCAACTTCACCGAATTTTCCCAT 60.022 41.667 0.00 0.00 0.00 4.00
2148 4878 1.455786 GTGATCGTGTCAACTTCACCG 59.544 52.381 0.00 0.00 38.90 4.94
2154 4884 1.416401 ACCCTTGTGATCGTGTCAACT 59.584 47.619 0.00 0.00 38.90 3.16
2285 5030 1.196012 CTTCCGACTTTCCCTAGCCT 58.804 55.000 0.00 0.00 0.00 4.58
2291 5036 2.391389 CGCAGCTTCCGACTTTCCC 61.391 63.158 0.00 0.00 0.00 3.97
2395 5141 2.280628 CTCGCCTTGTGAATTACTCCC 58.719 52.381 0.00 0.00 0.00 4.30
2423 5170 2.789893 GACACGATGAGAATAAGGCGAC 59.210 50.000 0.00 0.00 0.00 5.19
2424 5171 2.223735 GGACACGATGAGAATAAGGCGA 60.224 50.000 0.00 0.00 0.00 5.54
2425 5172 2.128035 GGACACGATGAGAATAAGGCG 58.872 52.381 0.00 0.00 0.00 5.52
2426 5173 2.128035 CGGACACGATGAGAATAAGGC 58.872 52.381 0.00 0.00 44.60 4.35
2427 5174 2.545952 CCCGGACACGATGAGAATAAGG 60.546 54.545 0.73 0.00 44.60 2.69
2428 5175 2.361119 TCCCGGACACGATGAGAATAAG 59.639 50.000 0.73 0.00 44.60 1.73
2429 5176 2.380941 TCCCGGACACGATGAGAATAA 58.619 47.619 0.73 0.00 44.60 1.40
2430 5177 2.061509 TCCCGGACACGATGAGAATA 57.938 50.000 0.73 0.00 44.60 1.75
2441 5188 2.528134 GGGATCAGATTCCCGGACA 58.472 57.895 0.73 0.00 45.84 4.02
2460 5207 2.894763 TTATGTCCGGGTTATGTCCG 57.105 50.000 0.00 0.00 46.43 4.79
2461 5208 5.467735 GTGTTATTATGTCCGGGTTATGTCC 59.532 44.000 0.00 0.00 0.00 4.02
2462 5209 5.467735 GGTGTTATTATGTCCGGGTTATGTC 59.532 44.000 0.00 0.00 0.00 3.06
2463 5210 5.104444 TGGTGTTATTATGTCCGGGTTATGT 60.104 40.000 0.00 0.00 0.00 2.29
2464 5211 5.369833 TGGTGTTATTATGTCCGGGTTATG 58.630 41.667 0.00 0.00 0.00 1.90
2465 5212 5.633655 TGGTGTTATTATGTCCGGGTTAT 57.366 39.130 0.00 0.00 0.00 1.89
2466 5213 5.432680 TTGGTGTTATTATGTCCGGGTTA 57.567 39.130 0.00 0.00 0.00 2.85
2467 5214 4.304048 TTGGTGTTATTATGTCCGGGTT 57.696 40.909 0.00 0.00 0.00 4.11
2468 5215 4.011698 GTTTGGTGTTATTATGTCCGGGT 58.988 43.478 0.00 0.00 0.00 5.28
2469 5216 4.266714 AGTTTGGTGTTATTATGTCCGGG 58.733 43.478 0.00 0.00 0.00 5.73
2470 5217 5.413213 TCAAGTTTGGTGTTATTATGTCCGG 59.587 40.000 0.00 0.00 0.00 5.14
2471 5218 6.489127 TCAAGTTTGGTGTTATTATGTCCG 57.511 37.500 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.