Multiple sequence alignment - TraesCS2D01G162200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G162200 chr2D 100.000 2612 0 0 1 2612 106651395 106648784 0.000000e+00 4824
1 TraesCS2D01G162200 chr2D 85.984 849 65 21 784 1619 106870894 106870087 0.000000e+00 859
2 TraesCS2D01G162200 chr2D 89.764 127 7 4 1666 1791 106869968 106869847 9.680000e-35 158
3 TraesCS2D01G162200 chr2B 92.323 990 46 11 642 1622 156607254 156606286 0.000000e+00 1380
4 TraesCS2D01G162200 chr2B 85.934 846 69 16 784 1619 157041849 157041044 0.000000e+00 857
5 TraesCS2D01G162200 chr2B 87.252 353 37 6 2266 2612 156605577 156605227 1.880000e-106 396
6 TraesCS2D01G162200 chr2B 90.038 261 12 7 1961 2208 156605941 156605682 2.510000e-85 326
7 TraesCS2D01G162200 chr2B 85.978 271 25 9 1650 1913 156606209 156605945 7.120000e-71 278
8 TraesCS2D01G162200 chr2B 80.573 314 45 7 1 300 416182050 416182361 7.270000e-56 228
9 TraesCS2D01G162200 chr2B 80.476 210 36 4 94 300 542939791 542939998 3.480000e-34 156
10 TraesCS2D01G162200 chr2B 89.600 125 7 3 1666 1789 157040929 157040810 1.250000e-33 154
11 TraesCS2D01G162200 chr2A 90.851 940 62 9 693 1622 103113294 103112369 0.000000e+00 1238
12 TraesCS2D01G162200 chr2A 84.795 855 81 21 784 1622 103140853 103140032 0.000000e+00 813
13 TraesCS2D01G162200 chr2A 86.700 609 74 6 94 696 103115808 103115201 0.000000e+00 669
14 TraesCS2D01G162200 chr2A 92.462 398 10 8 1622 2012 103112324 103111940 3.800000e-153 551
15 TraesCS2D01G162200 chr2A 82.304 599 63 26 2048 2612 103111935 103111346 1.820000e-131 479
16 TraesCS2D01G162200 chr2A 90.909 143 7 2 1650 1791 103139952 103139815 1.230000e-43 187


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G162200 chr2D 106648784 106651395 2611 True 4824.00 4824 100.00000 1 2612 1 chr2D.!!$R1 2611
1 TraesCS2D01G162200 chr2D 106869847 106870894 1047 True 508.50 859 87.87400 784 1791 2 chr2D.!!$R2 1007
2 TraesCS2D01G162200 chr2B 156605227 156607254 2027 True 595.00 1380 88.89775 642 2612 4 chr2B.!!$R1 1970
3 TraesCS2D01G162200 chr2B 157040810 157041849 1039 True 505.50 857 87.76700 784 1789 2 chr2B.!!$R2 1005
4 TraesCS2D01G162200 chr2A 103111346 103115808 4462 True 734.25 1238 88.07925 94 2612 4 chr2A.!!$R1 2518
5 TraesCS2D01G162200 chr2A 103139815 103140853 1038 True 500.00 813 87.85200 784 1791 2 chr2A.!!$R2 1007

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
63 64 0.029059 ACCCCACCCATAGGCTATGT 60.029 55.0 27.86 11.97 36.11 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1698 3790 0.532115 GTTGCACAATCCATCCACCC 59.468 55.0 0.0 0.0 0.0 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.892310 TCGAGTTTGATAGATGTGAACATG 57.108 37.500 0.00 0.00 36.57 3.21
25 26 6.630071 TCGAGTTTGATAGATGTGAACATGA 58.370 36.000 0.00 0.00 36.57 3.07
26 27 6.531594 TCGAGTTTGATAGATGTGAACATGAC 59.468 38.462 0.00 0.00 36.57 3.06
27 28 6.506984 CGAGTTTGATAGATGTGAACATGACG 60.507 42.308 0.00 0.00 36.57 4.35
28 29 6.398095 AGTTTGATAGATGTGAACATGACGA 58.602 36.000 0.00 0.00 36.57 4.20
29 30 6.533012 AGTTTGATAGATGTGAACATGACGAG 59.467 38.462 0.00 0.00 36.57 4.18
30 31 5.835113 TGATAGATGTGAACATGACGAGA 57.165 39.130 0.00 0.00 36.57 4.04
31 32 6.207691 TGATAGATGTGAACATGACGAGAA 57.792 37.500 0.00 0.00 36.57 2.87
32 33 6.036470 TGATAGATGTGAACATGACGAGAAC 58.964 40.000 0.00 0.00 36.57 3.01
33 34 4.527509 AGATGTGAACATGACGAGAACT 57.472 40.909 0.00 0.00 36.57 3.01
34 35 5.644977 AGATGTGAACATGACGAGAACTA 57.355 39.130 0.00 0.00 36.57 2.24
35 36 5.403246 AGATGTGAACATGACGAGAACTAC 58.597 41.667 0.00 0.00 36.57 2.73
36 37 4.577834 TGTGAACATGACGAGAACTACA 57.422 40.909 0.00 0.00 0.00 2.74
37 38 5.134202 TGTGAACATGACGAGAACTACAT 57.866 39.130 0.00 0.00 0.00 2.29
38 39 4.923281 TGTGAACATGACGAGAACTACATG 59.077 41.667 0.00 0.00 43.56 3.21
39 40 3.926527 TGAACATGACGAGAACTACATGC 59.073 43.478 0.00 0.00 42.28 4.06
40 41 2.893637 ACATGACGAGAACTACATGCC 58.106 47.619 0.00 0.00 42.28 4.40
41 42 2.233676 ACATGACGAGAACTACATGCCA 59.766 45.455 0.00 0.00 42.28 4.92
42 43 2.363788 TGACGAGAACTACATGCCAC 57.636 50.000 0.00 0.00 0.00 5.01
43 44 1.616374 TGACGAGAACTACATGCCACA 59.384 47.619 0.00 0.00 0.00 4.17
44 45 2.036604 TGACGAGAACTACATGCCACAA 59.963 45.455 0.00 0.00 0.00 3.33
45 46 2.412089 GACGAGAACTACATGCCACAAC 59.588 50.000 0.00 0.00 0.00 3.32
46 47 1.732259 CGAGAACTACATGCCACAACC 59.268 52.381 0.00 0.00 0.00 3.77
47 48 2.084546 GAGAACTACATGCCACAACCC 58.915 52.381 0.00 0.00 0.00 4.11
48 49 1.173913 GAACTACATGCCACAACCCC 58.826 55.000 0.00 0.00 0.00 4.95
49 50 0.480690 AACTACATGCCACAACCCCA 59.519 50.000 0.00 0.00 0.00 4.96
50 51 0.251165 ACTACATGCCACAACCCCAC 60.251 55.000 0.00 0.00 0.00 4.61
51 52 0.965363 CTACATGCCACAACCCCACC 60.965 60.000 0.00 0.00 0.00 4.61
52 53 2.433646 TACATGCCACAACCCCACCC 62.434 60.000 0.00 0.00 0.00 4.61
53 54 3.516512 ATGCCACAACCCCACCCA 61.517 61.111 0.00 0.00 0.00 4.51
54 55 2.867508 ATGCCACAACCCCACCCAT 61.868 57.895 0.00 0.00 0.00 4.00
55 56 1.513975 ATGCCACAACCCCACCCATA 61.514 55.000 0.00 0.00 0.00 2.74
56 57 1.379843 GCCACAACCCCACCCATAG 60.380 63.158 0.00 0.00 0.00 2.23
57 58 1.306296 CCACAACCCCACCCATAGG 59.694 63.158 0.00 0.00 40.04 2.57
58 59 1.379843 CACAACCCCACCCATAGGC 60.380 63.158 0.00 0.00 36.11 3.93
59 60 1.543896 ACAACCCCACCCATAGGCT 60.544 57.895 0.00 0.00 36.11 4.58
60 61 0.253441 ACAACCCCACCCATAGGCTA 60.253 55.000 0.00 0.00 36.11 3.93
61 62 1.149101 CAACCCCACCCATAGGCTAT 58.851 55.000 0.00 0.00 36.11 2.97
62 63 1.149101 AACCCCACCCATAGGCTATG 58.851 55.000 24.54 24.54 36.11 2.23
63 64 0.029059 ACCCCACCCATAGGCTATGT 60.029 55.000 27.86 11.97 36.11 2.29
64 65 1.149101 CCCCACCCATAGGCTATGTT 58.851 55.000 27.86 14.98 36.11 2.71
65 66 1.499007 CCCCACCCATAGGCTATGTTT 59.501 52.381 27.86 14.66 36.11 2.83
66 67 2.489073 CCCCACCCATAGGCTATGTTTC 60.489 54.545 27.86 0.00 36.11 2.78
67 68 2.489073 CCCACCCATAGGCTATGTTTCC 60.489 54.545 27.86 0.00 36.11 3.13
68 69 2.174639 CCACCCATAGGCTATGTTTCCA 59.825 50.000 27.86 0.00 36.11 3.53
69 70 3.372566 CCACCCATAGGCTATGTTTCCAA 60.373 47.826 27.86 0.00 36.11 3.53
70 71 3.632145 CACCCATAGGCTATGTTTCCAAC 59.368 47.826 27.86 0.00 36.11 3.77
71 72 3.268334 ACCCATAGGCTATGTTTCCAACA 59.732 43.478 27.86 0.00 40.92 3.33
72 73 4.079212 ACCCATAGGCTATGTTTCCAACAT 60.079 41.667 27.86 7.27 45.52 2.71
73 74 5.577662 ACCCATAGGCTATGTTTCCAACATT 60.578 40.000 27.86 2.44 42.82 2.71
74 75 7.037186 ACCCATAGGCTATGTTTCCAACATTT 61.037 38.462 27.86 1.21 42.82 2.32
75 76 8.462173 ACCCATAGGCTATGTTTCCAACATTTT 61.462 37.037 27.86 0.00 42.82 1.82
90 91 6.168164 CAACATTTTGGTTGGTGATTATGC 57.832 37.500 0.00 0.00 43.39 3.14
91 92 4.493547 ACATTTTGGTTGGTGATTATGCG 58.506 39.130 0.00 0.00 0.00 4.73
92 93 2.645730 TTTGGTTGGTGATTATGCGC 57.354 45.000 0.00 0.00 0.00 6.09
107 108 2.180017 CGCCCATGCAAGCAACTC 59.820 61.111 0.00 0.00 37.32 3.01
113 114 0.167470 CATGCAAGCAACTCGTGAGG 59.833 55.000 0.00 0.00 0.00 3.86
115 116 2.856032 CAAGCAACTCGTGAGGCG 59.144 61.111 1.43 0.00 43.01 5.52
125 126 2.087501 TCGTGAGGCGATTGCTAAAA 57.912 45.000 4.59 0.00 45.68 1.52
129 130 3.063997 CGTGAGGCGATTGCTAAAAGATT 59.936 43.478 4.59 0.00 44.77 2.40
138 139 6.672147 CGATTGCTAAAAGATTATTGGAGGG 58.328 40.000 0.00 0.00 0.00 4.30
160 161 7.867921 AGGGTCAACCATAGTTTGACATATTA 58.132 34.615 15.15 0.00 43.89 0.98
183 184 8.996024 TTACTTAACGAGATTGTGATCATTGA 57.004 30.769 0.00 0.00 34.60 2.57
207 208 9.517868 TGATGCATATTTTGGATGATATGTACA 57.482 29.630 0.00 0.00 36.38 2.90
240 241 9.060347 AGACTATGATGGTTAGTGCATATTTTG 57.940 33.333 0.00 0.00 30.15 2.44
241 242 8.169977 ACTATGATGGTTAGTGCATATTTTGG 57.830 34.615 0.00 0.00 0.00 3.28
244 245 6.422333 TGATGGTTAGTGCATATTTTGGAGA 58.578 36.000 0.00 0.00 0.00 3.71
249 250 8.849168 TGGTTAGTGCATATTTTGGAGAATATG 58.151 33.333 11.39 11.39 45.94 1.78
292 293 2.423538 GGTTCGTGCTTATTTGGATGCT 59.576 45.455 0.00 0.00 0.00 3.79
317 318 9.850628 CTATGTTTCATAGGCATATTTTGGATG 57.149 33.333 8.40 0.00 0.00 3.51
327 328 7.899973 AGGCATATTTTGGATGATATGTTTCC 58.100 34.615 0.00 0.00 38.12 3.13
395 398 4.996788 AATTGCCAGTTCTCCATTCATC 57.003 40.909 0.00 0.00 0.00 2.92
400 403 4.962362 TGCCAGTTCTCCATTCATCTAGTA 59.038 41.667 0.00 0.00 0.00 1.82
404 407 7.201652 GCCAGTTCTCCATTCATCTAGTAAAAC 60.202 40.741 0.00 0.00 0.00 2.43
405 408 7.824289 CCAGTTCTCCATTCATCTAGTAAAACA 59.176 37.037 0.00 0.00 0.00 2.83
429 432 8.237267 ACAAGCTAACTATGTTTTATTCTGCAC 58.763 33.333 0.00 0.00 0.00 4.57
449 452 7.225341 TCTGCACATAAACATCATACTCATCAC 59.775 37.037 0.00 0.00 0.00 3.06
462 465 9.935241 ATCATACTCATCACCAAGTCATATTAC 57.065 33.333 0.00 0.00 0.00 1.89
464 467 9.201127 CATACTCATCACCAAGTCATATTACTG 57.799 37.037 0.00 0.00 0.00 2.74
466 469 7.268586 ACTCATCACCAAGTCATATTACTGAC 58.731 38.462 0.00 0.00 44.78 3.51
482 485 6.502136 TTACTGACATTTCACAACACACAA 57.498 33.333 0.00 0.00 0.00 3.33
497 502 3.206150 CACACAAAACTCCTACAGCTGT 58.794 45.455 25.12 25.12 0.00 4.40
498 503 3.248602 CACACAAAACTCCTACAGCTGTC 59.751 47.826 25.56 0.00 0.00 3.51
503 508 1.717032 ACTCCTACAGCTGTCCAACA 58.283 50.000 25.56 4.02 0.00 3.33
520 525 3.490761 CCAACAGCAGGGTAAACAAACAG 60.491 47.826 0.00 0.00 0.00 3.16
522 527 3.832527 ACAGCAGGGTAAACAAACAGAT 58.167 40.909 0.00 0.00 0.00 2.90
529 534 6.206829 GCAGGGTAAACAAACAGATAACTTCT 59.793 38.462 0.00 0.00 33.90 2.85
561 566 4.271291 GGAATCTAGAGCCACAACGAATTC 59.729 45.833 9.05 0.00 0.00 2.17
570 575 3.673323 GCCACAACGAATTCCCTGAAATC 60.673 47.826 8.11 0.00 0.00 2.17
571 576 3.758554 CCACAACGAATTCCCTGAAATCT 59.241 43.478 8.11 0.00 0.00 2.40
574 579 6.095440 CCACAACGAATTCCCTGAAATCTATT 59.905 38.462 8.11 0.00 0.00 1.73
577 582 4.273480 ACGAATTCCCTGAAATCTATTGCG 59.727 41.667 0.00 0.00 0.00 4.85
595 601 1.792367 GCGGGAATTTGCAACTCAAAC 59.208 47.619 0.00 0.00 46.36 2.93
603 609 2.957491 TGCAACTCAAACAAAGTGGG 57.043 45.000 0.00 0.00 0.00 4.61
604 610 1.134848 TGCAACTCAAACAAAGTGGGC 60.135 47.619 0.00 0.00 0.00 5.36
741 2660 2.665000 CAGGCAGCTTCCCTCGAA 59.335 61.111 0.00 0.00 0.00 3.71
895 2822 0.108756 TTCACACACACCGTCGTTCA 60.109 50.000 0.00 0.00 0.00 3.18
905 2842 0.458543 CCGTCGTTCATCCTCACCTG 60.459 60.000 0.00 0.00 0.00 4.00
906 2843 0.243907 CGTCGTTCATCCTCACCTGT 59.756 55.000 0.00 0.00 0.00 4.00
908 2845 1.272490 GTCGTTCATCCTCACCTGTCA 59.728 52.381 0.00 0.00 0.00 3.58
909 2846 1.272490 TCGTTCATCCTCACCTGTCAC 59.728 52.381 0.00 0.00 0.00 3.67
910 2847 1.673033 CGTTCATCCTCACCTGTCACC 60.673 57.143 0.00 0.00 0.00 4.02
911 2848 1.625818 GTTCATCCTCACCTGTCACCT 59.374 52.381 0.00 0.00 0.00 4.00
912 2849 1.561643 TCATCCTCACCTGTCACCTC 58.438 55.000 0.00 0.00 0.00 3.85
913 2850 1.203174 TCATCCTCACCTGTCACCTCA 60.203 52.381 0.00 0.00 0.00 3.86
914 2851 1.066573 CATCCTCACCTGTCACCTCAC 60.067 57.143 0.00 0.00 0.00 3.51
915 2852 0.832135 TCCTCACCTGTCACCTCACC 60.832 60.000 0.00 0.00 0.00 4.02
916 2853 0.833834 CCTCACCTGTCACCTCACCT 60.834 60.000 0.00 0.00 0.00 4.00
917 2854 1.051812 CTCACCTGTCACCTCACCTT 58.948 55.000 0.00 0.00 0.00 3.50
918 2855 0.758734 TCACCTGTCACCTCACCTTG 59.241 55.000 0.00 0.00 0.00 3.61
919 2856 0.469917 CACCTGTCACCTCACCTTGT 59.530 55.000 0.00 0.00 0.00 3.16
920 2857 1.691976 CACCTGTCACCTCACCTTGTA 59.308 52.381 0.00 0.00 0.00 2.41
921 2858 1.971357 ACCTGTCACCTCACCTTGTAG 59.029 52.381 0.00 0.00 0.00 2.74
930 2867 3.070590 ACCTCACCTTGTAGTTGTACACC 59.929 47.826 0.00 0.00 38.95 4.16
932 2869 3.039743 TCACCTTGTAGTTGTACACCCA 58.960 45.455 0.00 0.00 38.95 4.51
958 2895 1.131638 ATTCTCCATTCTAGCCGGCA 58.868 50.000 31.54 14.00 0.00 5.69
973 2910 1.723608 CGGCACCAACTGTTTGCTCA 61.724 55.000 14.72 0.00 36.46 4.26
985 2922 1.001378 GTTTGCTCAACACCAGCGAAT 60.001 47.619 0.00 0.00 41.37 3.34
1146 3089 0.695347 CCTCCTTCCTGCAGTCCTTT 59.305 55.000 13.81 0.00 0.00 3.11
1155 3098 2.328099 GCAGTCCTTTGCCAGGTCG 61.328 63.158 0.00 0.00 44.37 4.79
1159 3102 0.744771 GTCCTTTGCCAGGTCGATCC 60.745 60.000 0.00 0.00 44.37 3.36
1263 3218 2.835895 GCCGAGGAGGAGGAGGAC 60.836 72.222 0.00 0.00 45.00 3.85
1264 3219 2.684104 CCGAGGAGGAGGAGGACA 59.316 66.667 0.00 0.00 45.00 4.02
1273 3234 1.446966 GAGGAGGACAACGAGCTGC 60.447 63.158 0.00 0.00 0.00 5.25
1308 3269 0.612229 AGGCGATCATGGCTAGGATG 59.388 55.000 0.59 0.00 43.83 3.51
1593 3554 1.420430 TCCAGTTCGTCAGGTTCCTT 58.580 50.000 0.00 0.00 0.00 3.36
1602 3563 0.178944 TCAGGTTCCTTGAGGACGGA 60.179 55.000 0.00 0.00 45.39 4.69
1696 3788 3.236003 GACGCGAAGAGTTGGGGGT 62.236 63.158 15.93 0.00 43.40 4.95
1697 3789 2.742372 CGCGAAGAGTTGGGGGTG 60.742 66.667 0.00 0.00 0.00 4.61
1698 3790 2.359975 GCGAAGAGTTGGGGGTGG 60.360 66.667 0.00 0.00 0.00 4.61
1699 3791 2.351276 CGAAGAGTTGGGGGTGGG 59.649 66.667 0.00 0.00 0.00 4.61
1785 3878 8.849168 TGATTTCGCCAATTGATCATAACTAAT 58.151 29.630 7.12 0.00 0.00 1.73
1791 3884 8.344831 CGCCAATTGATCATAACTAATCTTTGA 58.655 33.333 7.12 0.00 0.00 2.69
1922 4022 4.391830 GTGTCGATAAATCAAGCCTGACAA 59.608 41.667 0.00 0.00 36.92 3.18
1923 4023 4.631377 TGTCGATAAATCAAGCCTGACAAG 59.369 41.667 0.00 0.00 33.30 3.16
1925 4025 5.122396 GTCGATAAATCAAGCCTGACAAGTT 59.878 40.000 0.00 0.00 33.30 2.66
1926 4026 5.351465 TCGATAAATCAAGCCTGACAAGTTC 59.649 40.000 0.00 0.00 33.30 3.01
1928 4028 6.348458 CGATAAATCAAGCCTGACAAGTTCAA 60.348 38.462 0.00 0.00 33.30 2.69
1929 4029 4.574599 AATCAAGCCTGACAAGTTCAAC 57.425 40.909 0.00 0.00 33.30 3.18
2017 4121 1.535015 GCGAATCTCTTCCTCCTGACG 60.535 57.143 0.00 0.00 0.00 4.35
2022 4126 1.285078 TCTCTTCCTCCTGACGGATCA 59.715 52.381 0.00 0.00 39.01 2.92
2057 4173 0.173481 TCGACATCACAGGCTGCTAC 59.827 55.000 15.89 0.00 0.00 3.58
2069 4185 1.517257 CTGCTACTTCGTCCTGCCG 60.517 63.158 0.00 0.00 0.00 5.69
2119 4236 1.338389 CGGTGTACGGACTGGGAAAAT 60.338 52.381 0.00 0.00 39.42 1.82
2191 4308 1.742831 GTTCAAGTGTGTGGAAGCACA 59.257 47.619 0.00 0.00 45.85 4.57
2225 4357 4.762289 AAAACAAGGGTGTGGCATAAAA 57.238 36.364 0.00 0.00 38.27 1.52
2230 4362 4.346418 ACAAGGGTGTGGCATAAAATTGAA 59.654 37.500 10.38 0.00 36.31 2.69
2231 4363 5.163258 ACAAGGGTGTGGCATAAAATTGAAA 60.163 36.000 10.38 0.00 36.31 2.69
2235 4367 6.013466 AGGGTGTGGCATAAAATTGAAAAGAT 60.013 34.615 0.00 0.00 0.00 2.40
2240 4372 7.398618 TGTGGCATAAAATTGAAAAGATAGGGA 59.601 33.333 0.00 0.00 0.00 4.20
2259 4391 4.731929 AGGGATATTACAAGAACACCCCAT 59.268 41.667 0.00 0.00 37.06 4.00
2261 4393 6.566480 AGGGATATTACAAGAACACCCCATAT 59.434 38.462 0.00 0.00 37.06 1.78
2264 4429 9.449719 GGATATTACAAGAACACCCCATATAAG 57.550 37.037 0.00 0.00 0.00 1.73
2277 4442 3.823873 CCCATATAAGGCACGGCATAAAA 59.176 43.478 0.00 0.00 0.00 1.52
2328 4502 8.610248 TCGGTTTATTGAGTAAAAATCAGACA 57.390 30.769 0.00 0.00 34.23 3.41
2345 4519 4.095782 TCAGACAAAAAGCTAAACAACGCT 59.904 37.500 0.00 0.00 38.30 5.07
2359 4533 4.532314 ACAACGCTTAGCTAAACTAGGT 57.468 40.909 7.74 1.18 40.14 3.08
2437 4611 3.184683 CAGGCACTCGAGCGCTTC 61.185 66.667 23.51 9.26 34.60 3.86
2495 4670 1.593196 TACCAAGCTGACACAAGCAC 58.407 50.000 0.00 0.00 46.08 4.40
2512 4687 0.299300 CACGTTTGCGAAACTCGACA 59.701 50.000 6.87 0.00 43.74 4.35
2528 4703 1.068194 CGACAACACTGGAGAGGACTC 60.068 57.143 0.00 0.00 41.94 3.36
2548 4723 4.702612 ACTCATATGTCCGATAGAGCGAAT 59.297 41.667 1.90 0.00 39.76 3.34
2554 4729 5.196341 TGTCCGATAGAGCGAATTTATGT 57.804 39.130 0.00 0.00 39.76 2.29
2573 4748 0.460284 TCGCTTCGATCCTTCAAGGC 60.460 55.000 0.00 0.00 34.61 4.35
2581 4756 1.475682 GATCCTTCAAGGCTGGCAAAG 59.524 52.381 0.00 4.20 34.61 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.063426 GTCATGTTCACATCTATCAAACTCGAA 59.937 37.037 0.00 0.00 33.61 3.71
1 2 6.531594 GTCATGTTCACATCTATCAAACTCGA 59.468 38.462 0.00 0.00 33.61 4.04
2 3 6.506984 CGTCATGTTCACATCTATCAAACTCG 60.507 42.308 0.00 0.00 33.61 4.18
3 4 6.531594 TCGTCATGTTCACATCTATCAAACTC 59.468 38.462 0.00 0.00 33.61 3.01
4 5 6.398095 TCGTCATGTTCACATCTATCAAACT 58.602 36.000 0.00 0.00 33.61 2.66
5 6 6.531594 TCTCGTCATGTTCACATCTATCAAAC 59.468 38.462 0.00 0.00 33.61 2.93
6 7 6.630071 TCTCGTCATGTTCACATCTATCAAA 58.370 36.000 0.00 0.00 33.61 2.69
7 8 6.207691 TCTCGTCATGTTCACATCTATCAA 57.792 37.500 0.00 0.00 33.61 2.57
8 9 5.835113 TCTCGTCATGTTCACATCTATCA 57.165 39.130 0.00 0.00 33.61 2.15
9 10 6.269315 AGTTCTCGTCATGTTCACATCTATC 58.731 40.000 0.00 0.00 33.61 2.08
10 11 6.214191 AGTTCTCGTCATGTTCACATCTAT 57.786 37.500 0.00 0.00 33.61 1.98
11 12 5.644977 AGTTCTCGTCATGTTCACATCTA 57.355 39.130 0.00 0.00 33.61 1.98
12 13 4.527509 AGTTCTCGTCATGTTCACATCT 57.472 40.909 0.00 0.00 33.61 2.90
13 14 5.161358 TGTAGTTCTCGTCATGTTCACATC 58.839 41.667 0.00 0.00 33.61 3.06
14 15 5.134202 TGTAGTTCTCGTCATGTTCACAT 57.866 39.130 0.00 0.00 36.96 3.21
15 16 4.577834 TGTAGTTCTCGTCATGTTCACA 57.422 40.909 0.00 0.00 0.00 3.58
16 17 4.201628 GCATGTAGTTCTCGTCATGTTCAC 60.202 45.833 0.00 0.00 39.54 3.18
17 18 3.926527 GCATGTAGTTCTCGTCATGTTCA 59.073 43.478 0.00 0.00 39.54 3.18
18 19 3.307242 GGCATGTAGTTCTCGTCATGTTC 59.693 47.826 0.00 0.00 39.54 3.18
19 20 3.262420 GGCATGTAGTTCTCGTCATGTT 58.738 45.455 0.00 0.00 39.54 2.71
20 21 2.233676 TGGCATGTAGTTCTCGTCATGT 59.766 45.455 0.00 0.00 39.54 3.21
21 22 2.604914 GTGGCATGTAGTTCTCGTCATG 59.395 50.000 0.00 0.00 40.09 3.07
22 23 2.233676 TGTGGCATGTAGTTCTCGTCAT 59.766 45.455 0.00 0.00 0.00 3.06
23 24 1.616374 TGTGGCATGTAGTTCTCGTCA 59.384 47.619 0.00 0.00 0.00 4.35
24 25 2.363788 TGTGGCATGTAGTTCTCGTC 57.636 50.000 0.00 0.00 0.00 4.20
25 26 2.413837 GTTGTGGCATGTAGTTCTCGT 58.586 47.619 0.00 0.00 0.00 4.18
26 27 1.732259 GGTTGTGGCATGTAGTTCTCG 59.268 52.381 0.00 0.00 0.00 4.04
27 28 2.084546 GGGTTGTGGCATGTAGTTCTC 58.915 52.381 0.00 0.00 0.00 2.87
28 29 1.271926 GGGGTTGTGGCATGTAGTTCT 60.272 52.381 0.00 0.00 0.00 3.01
29 30 1.173913 GGGGTTGTGGCATGTAGTTC 58.826 55.000 0.00 0.00 0.00 3.01
30 31 0.480690 TGGGGTTGTGGCATGTAGTT 59.519 50.000 0.00 0.00 0.00 2.24
31 32 0.251165 GTGGGGTTGTGGCATGTAGT 60.251 55.000 0.00 0.00 0.00 2.73
32 33 0.965363 GGTGGGGTTGTGGCATGTAG 60.965 60.000 0.00 0.00 0.00 2.74
33 34 1.075836 GGTGGGGTTGTGGCATGTA 59.924 57.895 0.00 0.00 0.00 2.29
34 35 2.203625 GGTGGGGTTGTGGCATGT 60.204 61.111 0.00 0.00 0.00 3.21
35 36 2.996734 GGGTGGGGTTGTGGCATG 60.997 66.667 0.00 0.00 0.00 4.06
36 37 1.513975 TATGGGTGGGGTTGTGGCAT 61.514 55.000 0.00 0.00 0.00 4.40
37 38 2.148723 CTATGGGTGGGGTTGTGGCA 62.149 60.000 0.00 0.00 0.00 4.92
38 39 1.379843 CTATGGGTGGGGTTGTGGC 60.380 63.158 0.00 0.00 0.00 5.01
39 40 1.306296 CCTATGGGTGGGGTTGTGG 59.694 63.158 0.00 0.00 0.00 4.17
40 41 1.379843 GCCTATGGGTGGGGTTGTG 60.380 63.158 0.00 0.00 34.45 3.33
41 42 0.253441 TAGCCTATGGGTGGGGTTGT 60.253 55.000 0.00 0.00 37.84 3.32
42 43 1.149101 ATAGCCTATGGGTGGGGTTG 58.851 55.000 0.00 0.00 37.84 3.77
43 44 1.149101 CATAGCCTATGGGTGGGGTT 58.851 55.000 3.67 0.00 37.84 4.11
44 45 0.029059 ACATAGCCTATGGGTGGGGT 60.029 55.000 15.83 0.00 40.47 4.95
45 46 1.149101 AACATAGCCTATGGGTGGGG 58.851 55.000 15.83 0.00 40.47 4.96
46 47 2.489073 GGAAACATAGCCTATGGGTGGG 60.489 54.545 15.83 0.00 40.47 4.61
47 48 2.174639 TGGAAACATAGCCTATGGGTGG 59.825 50.000 15.83 0.00 40.47 4.61
48 49 3.576078 TGGAAACATAGCCTATGGGTG 57.424 47.619 15.83 0.00 40.47 4.61
67 68 5.163972 CGCATAATCACCAACCAAAATGTTG 60.164 40.000 0.00 0.00 44.12 3.33
68 69 4.928615 CGCATAATCACCAACCAAAATGTT 59.071 37.500 0.00 0.00 0.00 2.71
69 70 4.493547 CGCATAATCACCAACCAAAATGT 58.506 39.130 0.00 0.00 0.00 2.71
70 71 3.306703 GCGCATAATCACCAACCAAAATG 59.693 43.478 0.30 0.00 0.00 2.32
71 72 3.520569 GCGCATAATCACCAACCAAAAT 58.479 40.909 0.30 0.00 0.00 1.82
72 73 2.353208 GGCGCATAATCACCAACCAAAA 60.353 45.455 10.83 0.00 0.00 2.44
73 74 1.203523 GGCGCATAATCACCAACCAAA 59.796 47.619 10.83 0.00 0.00 3.28
74 75 0.814457 GGCGCATAATCACCAACCAA 59.186 50.000 10.83 0.00 0.00 3.67
75 76 1.034838 GGGCGCATAATCACCAACCA 61.035 55.000 10.83 0.00 0.00 3.67
76 77 1.034838 TGGGCGCATAATCACCAACC 61.035 55.000 10.83 0.00 0.00 3.77
77 78 1.032014 ATGGGCGCATAATCACCAAC 58.968 50.000 15.57 0.00 34.45 3.77
78 79 1.031235 CATGGGCGCATAATCACCAA 58.969 50.000 16.74 0.00 34.45 3.67
79 80 1.454572 GCATGGGCGCATAATCACCA 61.455 55.000 16.74 5.61 35.39 4.17
80 81 1.286880 GCATGGGCGCATAATCACC 59.713 57.895 16.74 0.00 0.00 4.02
81 82 0.385029 TTGCATGGGCGCATAATCAC 59.615 50.000 16.74 4.67 45.35 3.06
82 83 0.669619 CTTGCATGGGCGCATAATCA 59.330 50.000 16.74 11.51 45.35 2.57
83 84 0.665369 GCTTGCATGGGCGCATAATC 60.665 55.000 16.74 9.10 45.35 1.75
84 85 1.364901 GCTTGCATGGGCGCATAAT 59.635 52.632 16.74 0.00 45.35 1.28
85 86 1.602327 TTGCTTGCATGGGCGCATAA 61.602 50.000 16.74 7.34 45.35 1.90
86 87 2.050934 TTGCTTGCATGGGCGCATA 61.051 52.632 16.74 0.00 45.35 3.14
87 88 3.383681 TTGCTTGCATGGGCGCAT 61.384 55.556 11.00 11.00 45.35 4.73
88 89 4.360964 GTTGCTTGCATGGGCGCA 62.361 61.111 10.83 5.70 45.35 6.09
89 90 3.976902 GAGTTGCTTGCATGGGCGC 62.977 63.158 0.00 0.00 45.35 6.53
90 91 2.180017 GAGTTGCTTGCATGGGCG 59.820 61.111 1.34 0.00 45.35 6.13
91 92 2.180017 CGAGTTGCTTGCATGGGC 59.820 61.111 1.34 1.00 41.68 5.36
92 93 1.210931 CACGAGTTGCTTGCATGGG 59.789 57.895 1.34 0.00 0.00 4.00
107 108 1.999735 TCTTTTAGCAATCGCCTCACG 59.000 47.619 0.00 0.00 45.62 4.35
113 114 6.145535 CCTCCAATAATCTTTTAGCAATCGC 58.854 40.000 0.00 0.00 38.99 4.58
115 116 7.285401 TGACCCTCCAATAATCTTTTAGCAATC 59.715 37.037 0.00 0.00 0.00 2.67
125 126 5.672194 ACTATGGTTGACCCTCCAATAATCT 59.328 40.000 0.00 0.00 37.27 2.40
129 130 5.251932 TCAAACTATGGTTGACCCTCCAATA 59.748 40.000 0.00 0.00 37.27 1.90
160 161 7.466455 GCATCAATGATCACAATCTCGTTAAGT 60.466 37.037 0.00 0.00 32.75 2.24
164 165 4.637091 TGCATCAATGATCACAATCTCGTT 59.363 37.500 0.00 0.00 32.75 3.85
166 167 4.806342 TGCATCAATGATCACAATCTCG 57.194 40.909 0.00 0.00 32.75 4.04
173 174 8.085909 TCATCCAAAATATGCATCAATGATCAC 58.914 33.333 0.19 0.00 0.00 3.06
174 175 8.184304 TCATCCAAAATATGCATCAATGATCA 57.816 30.769 0.19 0.00 0.00 2.92
207 208 8.870116 TGCACTAACCATCATAGTCTTACATAT 58.130 33.333 0.00 0.00 31.33 1.78
208 209 8.245195 TGCACTAACCATCATAGTCTTACATA 57.755 34.615 0.00 0.00 31.33 2.29
215 216 8.292448 CCAAAATATGCACTAACCATCATAGTC 58.708 37.037 0.00 0.00 31.33 2.59
249 250 8.644318 AACCATCGTAGTCTTACATATGAAAC 57.356 34.615 10.38 1.91 30.15 2.78
276 277 6.563422 TGAAACATAGCATCCAAATAAGCAC 58.437 36.000 0.00 0.00 0.00 4.40
292 293 9.585369 TCATCCAAAATATGCCTATGAAACATA 57.415 29.630 0.00 0.00 0.00 2.29
371 372 5.549742 TGAATGGAGAACTGGCAATTTTT 57.450 34.783 0.00 0.00 0.00 1.94
373 374 5.021458 AGATGAATGGAGAACTGGCAATTT 58.979 37.500 0.00 0.00 0.00 1.82
374 375 4.607239 AGATGAATGGAGAACTGGCAATT 58.393 39.130 0.00 0.00 0.00 2.32
375 376 4.246712 AGATGAATGGAGAACTGGCAAT 57.753 40.909 0.00 0.00 0.00 3.56
382 385 8.178313 GCTTGTTTTACTAGATGAATGGAGAAC 58.822 37.037 0.00 0.00 0.00 3.01
404 407 8.236586 TGTGCAGAATAAAACATAGTTAGCTTG 58.763 33.333 0.00 0.00 0.00 4.01
405 408 8.335532 TGTGCAGAATAAAACATAGTTAGCTT 57.664 30.769 0.00 0.00 0.00 3.74
429 432 8.442632 ACTTGGTGATGAGTATGATGTTTATG 57.557 34.615 0.00 0.00 0.00 1.90
462 465 5.863397 AGTTTTGTGTGTTGTGAAATGTCAG 59.137 36.000 0.00 0.00 33.27 3.51
464 467 5.288472 GGAGTTTTGTGTGTTGTGAAATGTC 59.712 40.000 0.00 0.00 0.00 3.06
466 469 5.410067 AGGAGTTTTGTGTGTTGTGAAATG 58.590 37.500 0.00 0.00 0.00 2.32
482 485 2.438021 TGTTGGACAGCTGTAGGAGTTT 59.562 45.455 21.73 0.00 0.00 2.66
497 502 2.691011 GTTTGTTTACCCTGCTGTTGGA 59.309 45.455 0.00 0.00 0.00 3.53
498 503 2.428890 TGTTTGTTTACCCTGCTGTTGG 59.571 45.455 0.00 0.00 0.00 3.77
503 508 5.631119 AGTTATCTGTTTGTTTACCCTGCT 58.369 37.500 0.00 0.00 0.00 4.24
544 549 1.906574 AGGGAATTCGTTGTGGCTCTA 59.093 47.619 0.00 0.00 0.00 2.43
549 554 3.758554 AGATTTCAGGGAATTCGTTGTGG 59.241 43.478 0.00 0.00 30.31 4.17
550 555 6.683974 ATAGATTTCAGGGAATTCGTTGTG 57.316 37.500 0.00 0.00 30.31 3.33
561 566 2.638480 TCCCGCAATAGATTTCAGGG 57.362 50.000 0.00 0.00 38.73 4.45
574 579 1.035923 TTGAGTTGCAAATTCCCGCA 58.964 45.000 0.00 0.00 30.58 5.69
595 601 2.985896 TCGAGAATTAGGCCCACTTTG 58.014 47.619 0.00 0.00 0.00 2.77
603 609 5.915812 GAAGAATCCTTCGAGAATTAGGC 57.084 43.478 0.00 0.00 39.36 3.93
810 2729 5.803461 CGATCATGGAGTAAACAAGTCGTAA 59.197 40.000 0.00 0.00 0.00 3.18
895 2822 1.270907 GTGAGGTGACAGGTGAGGAT 58.729 55.000 0.00 0.00 0.00 3.24
905 2842 3.470645 ACAACTACAAGGTGAGGTGAC 57.529 47.619 0.00 0.00 33.95 3.67
906 2843 3.962063 TGTACAACTACAAGGTGAGGTGA 59.038 43.478 0.00 0.00 33.95 4.02
908 2845 3.070590 GGTGTACAACTACAAGGTGAGGT 59.929 47.826 2.87 0.00 33.95 3.85
909 2846 3.556423 GGGTGTACAACTACAAGGTGAGG 60.556 52.174 11.44 0.00 33.95 3.86
910 2847 3.070446 TGGGTGTACAACTACAAGGTGAG 59.930 47.826 11.44 0.00 33.95 3.51
911 2848 3.039743 TGGGTGTACAACTACAAGGTGA 58.960 45.455 11.44 0.00 33.95 4.02
912 2849 3.135994 GTGGGTGTACAACTACAAGGTG 58.864 50.000 21.28 0.00 39.30 4.00
913 2850 2.224113 CGTGGGTGTACAACTACAAGGT 60.224 50.000 24.83 0.00 34.53 3.50
914 2851 2.409975 CGTGGGTGTACAACTACAAGG 58.590 52.381 24.83 7.23 34.53 3.61
915 2852 1.796459 GCGTGGGTGTACAACTACAAG 59.204 52.381 24.83 12.15 34.53 3.16
916 2853 1.138464 TGCGTGGGTGTACAACTACAA 59.862 47.619 24.83 11.31 34.53 2.41
917 2854 0.751452 TGCGTGGGTGTACAACTACA 59.249 50.000 24.83 6.97 0.00 2.74
918 2855 1.425412 CTGCGTGGGTGTACAACTAC 58.575 55.000 16.86 16.86 0.00 2.73
919 2856 0.320073 GCTGCGTGGGTGTACAACTA 60.320 55.000 11.44 0.58 0.00 2.24
920 2857 1.597027 GCTGCGTGGGTGTACAACT 60.597 57.895 11.44 0.00 0.00 3.16
921 2858 1.234615 ATGCTGCGTGGGTGTACAAC 61.235 55.000 0.97 0.97 0.00 3.32
930 2867 0.379669 GAATGGAGAATGCTGCGTGG 59.620 55.000 0.00 0.00 34.84 4.94
932 2869 2.831333 CTAGAATGGAGAATGCTGCGT 58.169 47.619 0.00 0.00 34.84 5.24
973 2910 4.642429 AGACTTTAGAATTCGCTGGTGTT 58.358 39.130 0.00 0.00 0.00 3.32
985 2922 3.699538 TCTGCCATCGCTAGACTTTAGAA 59.300 43.478 0.00 0.00 35.36 2.10
1263 3218 1.630244 CTTCCTTCCGCAGCTCGTTG 61.630 60.000 5.15 0.00 36.19 4.10
1264 3219 1.374758 CTTCCTTCCGCAGCTCGTT 60.375 57.895 5.15 0.00 36.19 3.85
1273 3234 1.901085 CCTCCACCTCTTCCTTCCG 59.099 63.158 0.00 0.00 0.00 4.30
1302 3263 1.384502 CACTCCCAGCCCCATCCTA 60.385 63.158 0.00 0.00 0.00 2.94
1593 3554 1.074951 TCAGCAGAGTCCGTCCTCA 59.925 57.895 1.97 0.00 33.75 3.86
1696 3788 1.000233 GCACAATCCATCCACCCCA 60.000 57.895 0.00 0.00 0.00 4.96
1697 3789 0.614415 TTGCACAATCCATCCACCCC 60.614 55.000 0.00 0.00 0.00 4.95
1698 3790 0.532115 GTTGCACAATCCATCCACCC 59.468 55.000 0.00 0.00 0.00 4.61
1699 3791 1.255882 TGTTGCACAATCCATCCACC 58.744 50.000 0.00 0.00 0.00 4.61
1791 3884 8.938801 TGGGAGCAATGTGTATAATCATTAAT 57.061 30.769 4.15 0.00 33.69 1.40
1792 3885 8.759481 TTGGGAGCAATGTGTATAATCATTAA 57.241 30.769 4.15 0.00 33.69 1.40
1793 3886 8.759481 TTTGGGAGCAATGTGTATAATCATTA 57.241 30.769 4.15 0.00 33.69 1.90
1795 3888 7.658525 TTTTGGGAGCAATGTGTATAATCAT 57.341 32.000 0.00 0.00 0.00 2.45
1877 3976 4.008539 GATTTGGCAGAGACAATTCGAC 57.991 45.455 0.00 0.00 27.33 4.20
1922 4022 2.103153 TCAGGTCTGAGGGTTGAACT 57.897 50.000 0.00 0.00 34.14 3.01
2057 4173 1.284982 CTTGTGACGGCAGGACGAAG 61.285 60.000 0.00 0.00 37.61 3.79
2108 4225 3.641436 ACCTCACCAAAATTTTCCCAGTC 59.359 43.478 0.00 0.00 0.00 3.51
2212 4329 7.492344 CCTATCTTTTCAATTTTATGCCACACC 59.508 37.037 0.00 0.00 0.00 4.16
2213 4330 7.492344 CCCTATCTTTTCAATTTTATGCCACAC 59.508 37.037 0.00 0.00 0.00 3.82
2214 4331 7.398618 TCCCTATCTTTTCAATTTTATGCCACA 59.601 33.333 0.00 0.00 0.00 4.17
2230 4362 8.218488 GGGTGTTCTTGTAATATCCCTATCTTT 58.782 37.037 0.00 0.00 0.00 2.52
2231 4363 7.202195 GGGGTGTTCTTGTAATATCCCTATCTT 60.202 40.741 0.00 0.00 34.63 2.40
2235 4367 5.290335 TGGGGTGTTCTTGTAATATCCCTA 58.710 41.667 4.69 0.00 34.63 3.53
2240 4372 7.888546 GCCTTATATGGGGTGTTCTTGTAATAT 59.111 37.037 6.78 0.00 0.00 1.28
2249 4381 2.218603 CGTGCCTTATATGGGGTGTTC 58.781 52.381 6.78 0.00 0.00 3.18
2259 4391 4.771903 TCACTTTTATGCCGTGCCTTATA 58.228 39.130 0.00 0.00 0.00 0.98
2261 4393 3.006940 CTCACTTTTATGCCGTGCCTTA 58.993 45.455 0.00 0.00 0.00 2.69
2264 4429 1.135689 CACTCACTTTTATGCCGTGCC 60.136 52.381 0.00 0.00 0.00 5.01
2277 4442 5.812127 GTCTTTTCAAATTTTGGCACTCACT 59.188 36.000 9.18 0.00 0.00 3.41
2291 4456 7.992008 ACTCAATAAACCGAAGTCTTTTCAAA 58.008 30.769 0.00 0.00 0.00 2.69
2345 4519 9.649167 GTGATGTTTTAGACCTAGTTTAGCTAA 57.351 33.333 0.86 0.86 0.00 3.09
2385 4559 1.150536 GGGTGTTGGCCTTCTGACA 59.849 57.895 3.32 0.00 0.00 3.58
2386 4560 1.603739 GGGGTGTTGGCCTTCTGAC 60.604 63.158 3.32 0.00 0.00 3.51
2434 4608 2.105128 CTCTGGTAGCGGCGGAAG 59.895 66.667 9.78 0.00 0.00 3.46
2435 4609 2.678934 ACTCTGGTAGCGGCGGAA 60.679 61.111 9.78 0.00 0.00 4.30
2465 4640 6.478673 TGTGTCAGCTTGGTATAATACGAATG 59.521 38.462 0.00 0.00 0.00 2.67
2467 4642 5.968254 TGTGTCAGCTTGGTATAATACGAA 58.032 37.500 0.00 0.00 0.00 3.85
2495 4670 1.267136 TGTTGTCGAGTTTCGCAAACG 60.267 47.619 8.90 0.00 45.88 3.60
2512 4687 4.357325 ACATATGAGTCCTCTCCAGTGTT 58.643 43.478 10.38 0.00 39.75 3.32
2528 4703 7.489435 ACATAAATTCGCTCTATCGGACATATG 59.511 37.037 0.00 0.00 0.00 1.78
2548 4723 4.118093 TGAAGGATCGAAGCGACATAAA 57.882 40.909 0.00 0.00 39.18 1.40
2554 4729 0.460284 GCCTTGAAGGATCGAAGCGA 60.460 55.000 16.93 0.00 37.67 4.93
2559 4734 1.221840 GCCAGCCTTGAAGGATCGA 59.778 57.895 16.93 0.00 37.67 3.59
2573 4748 0.865769 ACGCGAGTTAACTTTGCCAG 59.134 50.000 15.93 13.92 46.40 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.