Multiple sequence alignment - TraesCS2D01G161700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G161700 chr2D 100.000 5562 0 0 1 5562 106371719 106366158 0.000000e+00 10272.0
1 TraesCS2D01G161700 chr2B 93.354 2964 117 36 451 3377 155048294 155045374 0.000000e+00 4309.0
2 TraesCS2D01G161700 chr2B 95.091 1324 53 9 3689 5005 155044732 155043414 0.000000e+00 2074.0
3 TraesCS2D01G161700 chr2B 86.275 459 29 15 20 446 155051731 155051275 8.440000e-128 468.0
4 TraesCS2D01G161700 chr2B 90.083 242 15 6 3381 3622 155045293 155045061 7.000000e-79 305.0
5 TraesCS2D01G161700 chr2A 95.051 1859 50 22 456 2278 102904093 102902241 0.000000e+00 2885.0
6 TraesCS2D01G161700 chr2A 93.885 1668 63 11 3430 5062 102900948 102899285 0.000000e+00 2479.0
7 TraesCS2D01G161700 chr2A 94.906 1119 51 2 2263 3377 102902228 102901112 0.000000e+00 1746.0
8 TraesCS2D01G161700 chr2A 82.281 491 56 20 1 469 102904894 102904413 4.040000e-106 396.0
9 TraesCS2D01G161700 chr2A 97.600 125 3 0 5361 5485 102899284 102899160 1.210000e-51 215.0
10 TraesCS2D01G161700 chr2A 96.000 50 2 0 4722 4771 102741045 102740996 1.280000e-11 82.4
11 TraesCS2D01G161700 chr3B 91.935 62 5 0 5433 5494 340786598 340786537 2.760000e-13 87.9
12 TraesCS2D01G161700 chr3A 91.935 62 5 0 5433 5494 311987791 311987730 2.760000e-13 87.9
13 TraesCS2D01G161700 chr3A 82.432 74 12 1 5021 5093 125483627 125483554 4.650000e-06 63.9
14 TraesCS2D01G161700 chr3D 91.667 60 5 0 5433 5492 234808184 234808125 3.570000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G161700 chr2D 106366158 106371719 5561 True 10272.0 10272 100.00000 1 5562 1 chr2D.!!$R1 5561
1 TraesCS2D01G161700 chr2B 155043414 155051731 8317 True 1789.0 4309 91.20075 20 5005 4 chr2B.!!$R1 4985
2 TraesCS2D01G161700 chr2A 102899160 102904894 5734 True 1544.2 2885 92.74460 1 5485 5 chr2A.!!$R2 5484

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
811 3840 0.107459 GTAGGCCTGCCTCTTTGGAG 60.107 60.0 17.99 0.0 44.43 3.86 F
2533 5649 1.878953 TTTCAGGACCGCTTGAGTTC 58.121 50.0 0.00 0.0 31.29 3.01 F
3408 6605 1.131638 TGCACTCAAGAACTCCCACT 58.868 50.0 0.00 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2805 5921 0.979187 AGGGCCCGAGTTCCGAAATA 60.979 55.0 18.44 0.0 41.76 1.40 R
3765 7352 0.323633 CATGTGCCCCATCCTGTCAA 60.324 55.0 0.00 0.0 0.00 3.18 R
5176 8774 0.035439 GGGATCCGCACTCCTTGAAA 60.035 55.0 5.45 0.0 33.05 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 1.739466 CATGTGATTGGTGGTCTTCGG 59.261 52.381 0.00 0.00 0.00 4.30
71 72 4.280019 GGGGAGGCGTTGGTTGGT 62.280 66.667 0.00 0.00 0.00 3.67
96 97 8.398665 GTGTTAGTTCTTCACATTTCTCTTGTT 58.601 33.333 0.00 0.00 33.04 2.83
117 118 5.875910 TGTTTTTGGTTGTCTTCTAAGTCGA 59.124 36.000 0.00 0.00 0.00 4.20
212 213 7.831691 TTTGAGGACTTCATTGGTGAAAATA 57.168 32.000 0.00 0.00 43.39 1.40
239 240 2.579684 AAGACGGATTCGCTGGCTCC 62.580 60.000 0.00 0.00 41.72 4.70
241 242 4.514577 CGGATTCGCTGGCTCCGT 62.515 66.667 11.79 0.00 45.30 4.69
243 244 2.892425 GATTCGCTGGCTCCGTGG 60.892 66.667 0.00 0.00 0.00 4.94
244 245 3.371097 GATTCGCTGGCTCCGTGGA 62.371 63.158 0.00 0.00 0.00 4.02
248 249 4.767255 GCTGGCTCCGTGGAGGTG 62.767 72.222 17.29 0.00 42.19 4.00
325 344 2.847234 TGTCCAGGTCGGCCAGTT 60.847 61.111 9.71 0.00 37.19 3.16
326 345 2.358737 GTCCAGGTCGGCCAGTTG 60.359 66.667 9.71 0.00 37.19 3.16
329 348 2.425592 CAGGTCGGCCAGTTGTGA 59.574 61.111 9.71 0.00 37.19 3.58
331 350 3.041940 GGTCGGCCAGTTGTGACG 61.042 66.667 0.00 0.00 32.17 4.35
332 351 3.041940 GTCGGCCAGTTGTGACGG 61.042 66.667 2.24 0.00 0.00 4.79
333 352 4.980805 TCGGCCAGTTGTGACGGC 62.981 66.667 2.24 0.00 41.55 5.68
335 354 2.594592 GGCCAGTTGTGACGGCTT 60.595 61.111 0.00 0.00 41.79 4.35
337 356 0.887387 GGCCAGTTGTGACGGCTTTA 60.887 55.000 0.00 0.00 41.79 1.85
338 357 0.948678 GCCAGTTGTGACGGCTTTAA 59.051 50.000 0.00 0.00 40.18 1.52
370 408 6.469782 TCTACTACACTTAATTAACCGGGG 57.530 41.667 6.32 0.00 0.00 5.73
396 434 9.983804 GTACCCTCTTGTCTTTTTAATAAATCG 57.016 33.333 0.00 0.00 0.00 3.34
449 488 9.933723 GTTACCTATTCCTAGTCACACTTAAAA 57.066 33.333 0.00 0.00 0.00 1.52
524 3543 2.363680 CCTAGTGGCATAGTCAGTGGAG 59.636 54.545 0.00 0.00 0.00 3.86
596 3615 5.753721 ATTTATCCAGTCAGCTAGGATCC 57.246 43.478 2.48 2.48 41.11 3.36
597 3616 1.626686 ATCCAGTCAGCTAGGATCCG 58.373 55.000 5.98 0.00 37.61 4.18
618 3637 3.680786 TCACCGGTGACTGGCTCG 61.681 66.667 33.23 4.63 34.14 5.03
639 3664 1.802069 GTGGGTCAGAGAAGAACAGC 58.198 55.000 0.00 0.00 0.00 4.40
705 3731 1.041437 CCGTACTGGAGGGAAGATCC 58.959 60.000 0.00 0.00 42.00 3.36
723 3749 4.886489 AGATCCAATCTAAAAGCAGGAAGC 59.114 41.667 0.00 0.00 40.09 3.86
766 3795 2.273449 CCCTCCACCTGTGATGCC 59.727 66.667 0.00 0.00 0.00 4.40
769 3798 0.465097 CCTCCACCTGTGATGCCATC 60.465 60.000 0.00 0.00 0.00 3.51
808 3837 1.450312 CCGTAGGCCTGCCTCTTTG 60.450 63.158 17.99 0.00 46.14 2.77
810 3839 1.899437 CGTAGGCCTGCCTCTTTGGA 61.899 60.000 17.99 0.00 44.43 3.53
811 3840 0.107459 GTAGGCCTGCCTCTTTGGAG 60.107 60.000 17.99 0.00 44.43 3.86
865 3896 2.282887 CCGTCCACCCCCAAAAGG 60.283 66.667 0.00 0.00 0.00 3.11
2066 5144 9.249457 CACAATTCGAGCTAGTAGAAAATATCA 57.751 33.333 0.00 0.00 0.00 2.15
2186 5273 6.152323 AGTCCAAGACGTTTACTTCTATGCTA 59.848 38.462 0.00 0.00 37.67 3.49
2267 5354 7.375106 ACTAATCAGCAATCTCAAGAACAAG 57.625 36.000 0.00 0.00 0.00 3.16
2270 5385 7.463961 AATCAGCAATCTCAAGAACAAGAAT 57.536 32.000 0.00 0.00 0.00 2.40
2277 5392 9.415544 GCAATCTCAAGAACAAGAATATTGTTT 57.584 29.630 7.45 0.00 42.11 2.83
2348 5463 5.959618 GTGGAGCCACACTAATTTTTAGT 57.040 39.130 14.53 0.00 45.53 2.24
2399 5514 9.881649 CATATAGGTTACACATGCATAGATTCT 57.118 33.333 0.00 0.00 0.00 2.40
2411 5527 5.319453 TGCATAGATTCTGGGGAATGATTC 58.681 41.667 0.00 0.00 41.68 2.52
2533 5649 1.878953 TTTCAGGACCGCTTGAGTTC 58.121 50.000 0.00 0.00 31.29 3.01
2798 5914 6.310941 TCCCATGAAGTGAAGGTAAAAATCA 58.689 36.000 0.00 0.00 0.00 2.57
2805 5921 9.936759 TGAAGTGAAGGTAAAAATCAAAAAGTT 57.063 25.926 0.00 0.00 0.00 2.66
2929 6049 2.711009 GTCATGATAACCCCATCCTCCA 59.289 50.000 0.00 0.00 0.00 3.86
2954 6074 4.103153 CCCATGTTATGTGTCCTAGGATGT 59.897 45.833 16.27 4.17 0.00 3.06
2987 6107 2.346099 ATTTTTCACGGTGGCATTCG 57.654 45.000 8.50 10.79 0.00 3.34
2992 6112 1.154488 CACGGTGGCATTCGTTTCG 60.154 57.895 14.46 2.87 37.53 3.46
3009 6129 5.025826 CGTTTCGTTGTCTAAGCTGTTTTT 58.974 37.500 0.00 0.00 0.00 1.94
3205 6325 3.305335 GCAAACAATGGAGTCCACGATTT 60.305 43.478 15.86 11.89 35.80 2.17
3298 6418 6.974932 TGCTTTTACTTTGCAATTTTGACA 57.025 29.167 0.00 0.00 33.48 3.58
3351 6471 9.982651 TTTAAGCATGTTATACTGATACCTCTC 57.017 33.333 0.00 0.00 0.00 3.20
3358 6478 6.721668 TGTTATACTGATACCTCTCCATGGAG 59.278 42.308 32.60 32.60 43.21 3.86
3370 6490 5.072329 CCTCTCCATGGAGCCTTCTATTTTA 59.928 44.000 33.39 13.16 41.71 1.52
3377 6497 6.575244 TGGAGCCTTCTATTTTATTCCTGA 57.425 37.500 0.00 0.00 0.00 3.86
3379 6499 7.056635 TGGAGCCTTCTATTTTATTCCTGAAG 58.943 38.462 0.00 0.00 0.00 3.02
3408 6605 1.131638 TGCACTCAAGAACTCCCACT 58.868 50.000 0.00 0.00 0.00 4.00
3409 6606 2.325484 TGCACTCAAGAACTCCCACTA 58.675 47.619 0.00 0.00 0.00 2.74
3410 6607 2.703536 TGCACTCAAGAACTCCCACTAA 59.296 45.455 0.00 0.00 0.00 2.24
3517 6797 8.795786 TGTTGGAACTTTATTTCATTCTTTCG 57.204 30.769 0.00 0.00 0.00 3.46
3586 6866 8.204836 TCCTAAAGAAGCATCTAAATAGTCCAC 58.795 37.037 0.00 0.00 33.77 4.02
3713 7276 5.875359 CCTCCTGTTATGAGTGTAAACTTCC 59.125 44.000 0.00 0.00 0.00 3.46
3749 7335 6.299805 ACATTAGACTATGGAGCACTGAAA 57.700 37.500 0.00 0.00 0.00 2.69
3765 7352 7.889469 AGCACTGAAATGTGTTATTTTCTCAT 58.111 30.769 0.00 0.00 39.89 2.90
4018 7605 2.360165 GCTGAATGTGATCCCCATTGAC 59.640 50.000 11.27 1.41 32.84 3.18
4031 7618 1.888512 CCATTGACACCAACCTGAAGG 59.111 52.381 0.00 0.00 42.17 3.46
4081 7668 1.134159 CCTCCCATCAAGAGGCTTCTG 60.134 57.143 0.00 0.00 44.30 3.02
4099 7686 0.664224 TGCATGCTTGGCACGATATG 59.336 50.000 20.33 0.00 43.04 1.78
4180 7767 2.224992 ACACATAATCCTGGTGCACCAA 60.225 45.455 36.71 25.14 46.97 3.67
4189 7776 1.374758 GGTGCACCAAGACGAGGAG 60.375 63.158 31.23 0.00 35.64 3.69
4246 7833 0.831966 AGCATGAGAGGAAGAGCAGG 59.168 55.000 0.00 0.00 0.00 4.85
4518 8105 2.435938 GGCGGCGATGTTCAAGGA 60.436 61.111 12.98 0.00 0.00 3.36
4612 8199 7.604164 TGTGTGGTGATTTTTGTGTTTATGTTT 59.396 29.630 0.00 0.00 0.00 2.83
4629 8216 2.095466 TGTTTATAGGTTGCGCTGTTGC 60.095 45.455 9.73 0.00 0.00 4.17
4650 8238 6.344572 TGCTGTATATTTAGTTCAAGTGCG 57.655 37.500 0.00 0.00 0.00 5.34
4663 8251 2.552315 TCAAGTGCGAAAATGGGAAGAC 59.448 45.455 0.00 0.00 0.00 3.01
4666 8254 0.035598 TGCGAAAATGGGAAGACGGA 59.964 50.000 0.00 0.00 0.00 4.69
4687 8275 1.115326 AGCCCTTGTTGTTTGGAGCC 61.115 55.000 0.00 0.00 0.00 4.70
4730 8319 9.923143 TGTATATGTCTTGATAGGAAATTACGG 57.077 33.333 0.00 0.00 0.00 4.02
4883 8476 6.706716 TGATACAACCGTTGTGAGAAAATACA 59.293 34.615 24.25 3.24 45.03 2.29
4888 8481 3.491639 CCGTTGTGAGAAAATACACGACA 59.508 43.478 14.94 0.00 45.96 4.35
4931 8524 3.791353 CGTCAACAAGTCCAAAGAAAAGC 59.209 43.478 0.00 0.00 0.00 3.51
4932 8525 4.674101 CGTCAACAAGTCCAAAGAAAAGCA 60.674 41.667 0.00 0.00 0.00 3.91
4989 8582 1.074471 TAGGATGCAGGAGGTCCCC 60.074 63.158 0.00 0.00 36.42 4.81
5007 8600 2.832129 CCCCTCTGAAACTACTACAGCA 59.168 50.000 0.00 0.00 0.00 4.41
5008 8601 3.452627 CCCCTCTGAAACTACTACAGCAT 59.547 47.826 0.00 0.00 0.00 3.79
5009 8602 4.080863 CCCCTCTGAAACTACTACAGCATT 60.081 45.833 0.00 0.00 0.00 3.56
5010 8603 5.491982 CCCTCTGAAACTACTACAGCATTT 58.508 41.667 0.00 0.00 0.00 2.32
5011 8604 5.582665 CCCTCTGAAACTACTACAGCATTTC 59.417 44.000 0.00 0.00 0.00 2.17
5012 8605 5.582665 CCTCTGAAACTACTACAGCATTTCC 59.417 44.000 0.00 0.00 0.00 3.13
5013 8606 6.109156 TCTGAAACTACTACAGCATTTCCA 57.891 37.500 0.00 0.00 0.00 3.53
5014 8607 5.932303 TCTGAAACTACTACAGCATTTCCAC 59.068 40.000 0.00 0.00 0.00 4.02
5015 8608 5.001232 TGAAACTACTACAGCATTTCCACC 58.999 41.667 0.00 0.00 0.00 4.61
5016 8609 4.634012 AACTACTACAGCATTTCCACCA 57.366 40.909 0.00 0.00 0.00 4.17
5034 8632 1.423921 CCATCCGGGTTTATTAGGCCT 59.576 52.381 11.78 11.78 0.00 5.19
5035 8633 2.158519 CCATCCGGGTTTATTAGGCCTT 60.159 50.000 12.58 0.00 0.00 4.35
5116 8714 9.944376 ATGCCACGAAGAATATAATATTGTACT 57.056 29.630 0.00 0.00 0.00 2.73
5117 8715 9.772973 TGCCACGAAGAATATAATATTGTACTT 57.227 29.630 0.00 0.00 0.00 2.24
5132 8730 9.703892 AATATTGTACTTCTGAAGCATAGCTAG 57.296 33.333 17.00 0.00 38.25 3.42
5133 8731 5.521906 TGTACTTCTGAAGCATAGCTAGG 57.478 43.478 17.00 0.00 38.25 3.02
5134 8732 4.342378 TGTACTTCTGAAGCATAGCTAGGG 59.658 45.833 17.00 0.00 38.25 3.53
5135 8733 3.647636 ACTTCTGAAGCATAGCTAGGGA 58.352 45.455 17.00 0.00 38.25 4.20
5136 8734 4.230455 ACTTCTGAAGCATAGCTAGGGAT 58.770 43.478 17.00 0.00 38.25 3.85
5137 8735 5.398236 ACTTCTGAAGCATAGCTAGGGATA 58.602 41.667 17.00 0.00 38.25 2.59
5138 8736 5.841237 ACTTCTGAAGCATAGCTAGGGATAA 59.159 40.000 17.00 0.00 38.25 1.75
5139 8737 6.500049 ACTTCTGAAGCATAGCTAGGGATAAT 59.500 38.462 17.00 0.00 38.25 1.28
5140 8738 6.291648 TCTGAAGCATAGCTAGGGATAATG 57.708 41.667 7.62 0.00 38.25 1.90
5141 8739 6.019108 TCTGAAGCATAGCTAGGGATAATGA 58.981 40.000 7.62 0.00 38.25 2.57
5142 8740 6.042638 TGAAGCATAGCTAGGGATAATGAC 57.957 41.667 7.62 0.00 38.25 3.06
5143 8741 5.543790 TGAAGCATAGCTAGGGATAATGACA 59.456 40.000 7.62 0.00 38.25 3.58
5144 8742 5.674052 AGCATAGCTAGGGATAATGACAG 57.326 43.478 7.62 0.00 36.99 3.51
5145 8743 5.336945 AGCATAGCTAGGGATAATGACAGA 58.663 41.667 7.62 0.00 36.99 3.41
5146 8744 5.963253 AGCATAGCTAGGGATAATGACAGAT 59.037 40.000 7.62 0.00 36.99 2.90
5147 8745 6.098124 AGCATAGCTAGGGATAATGACAGATC 59.902 42.308 7.62 0.00 36.99 2.75
5148 8746 6.098124 GCATAGCTAGGGATAATGACAGATCT 59.902 42.308 7.62 0.00 0.00 2.75
5149 8747 7.286546 GCATAGCTAGGGATAATGACAGATCTA 59.713 40.741 7.62 0.00 0.00 1.98
5150 8748 8.629158 CATAGCTAGGGATAATGACAGATCTAC 58.371 40.741 0.00 0.00 0.00 2.59
5151 8749 5.955355 AGCTAGGGATAATGACAGATCTACC 59.045 44.000 0.00 0.00 0.00 3.18
5152 8750 5.717178 GCTAGGGATAATGACAGATCTACCA 59.283 44.000 0.00 0.00 0.00 3.25
5153 8751 6.127479 GCTAGGGATAATGACAGATCTACCAG 60.127 46.154 0.00 0.00 0.00 4.00
5154 8752 4.530161 AGGGATAATGACAGATCTACCAGC 59.470 45.833 0.00 0.00 0.00 4.85
5155 8753 4.530161 GGGATAATGACAGATCTACCAGCT 59.470 45.833 0.00 0.00 0.00 4.24
5156 8754 5.012561 GGGATAATGACAGATCTACCAGCTT 59.987 44.000 0.00 0.00 0.00 3.74
5157 8755 6.211584 GGGATAATGACAGATCTACCAGCTTA 59.788 42.308 0.00 0.00 0.00 3.09
5158 8756 7.093992 GGATAATGACAGATCTACCAGCTTAC 58.906 42.308 0.00 0.00 0.00 2.34
5159 8757 4.946478 ATGACAGATCTACCAGCTTACC 57.054 45.455 0.00 0.00 0.00 2.85
5160 8758 3.708451 TGACAGATCTACCAGCTTACCA 58.292 45.455 0.00 0.00 0.00 3.25
5161 8759 4.093743 TGACAGATCTACCAGCTTACCAA 58.906 43.478 0.00 0.00 0.00 3.67
5162 8760 4.716784 TGACAGATCTACCAGCTTACCAAT 59.283 41.667 0.00 0.00 0.00 3.16
5163 8761 5.028549 ACAGATCTACCAGCTTACCAATG 57.971 43.478 0.00 0.00 0.00 2.82
5164 8762 4.141620 ACAGATCTACCAGCTTACCAATGG 60.142 45.833 0.00 0.00 40.10 3.16
5165 8763 2.710096 TCTACCAGCTTACCAATGGC 57.290 50.000 0.00 0.00 37.64 4.40
5166 8764 2.196595 TCTACCAGCTTACCAATGGCT 58.803 47.619 0.00 0.00 37.64 4.75
5167 8765 2.170607 TCTACCAGCTTACCAATGGCTC 59.829 50.000 0.00 0.00 37.64 4.70
5168 8766 0.698238 ACCAGCTTACCAATGGCTCA 59.302 50.000 0.00 0.00 37.64 4.26
5169 8767 1.285962 ACCAGCTTACCAATGGCTCAT 59.714 47.619 0.00 0.00 37.64 2.90
5170 8768 2.291800 ACCAGCTTACCAATGGCTCATT 60.292 45.455 0.00 0.00 37.64 2.57
5171 8769 3.053693 ACCAGCTTACCAATGGCTCATTA 60.054 43.478 0.00 0.00 37.64 1.90
5172 8770 3.953612 CCAGCTTACCAATGGCTCATTAA 59.046 43.478 0.00 0.00 32.35 1.40
5173 8771 4.586001 CCAGCTTACCAATGGCTCATTAAT 59.414 41.667 0.00 0.00 32.35 1.40
5174 8772 5.769662 CCAGCTTACCAATGGCTCATTAATA 59.230 40.000 0.00 0.00 32.35 0.98
5175 8773 6.265196 CCAGCTTACCAATGGCTCATTAATAA 59.735 38.462 0.00 3.05 32.35 1.40
5176 8774 7.039504 CCAGCTTACCAATGGCTCATTAATAAT 60.040 37.037 0.00 0.00 32.35 1.28
5177 8775 8.362639 CAGCTTACCAATGGCTCATTAATAATT 58.637 33.333 0.00 0.00 32.35 1.40
5178 8776 8.927411 AGCTTACCAATGGCTCATTAATAATTT 58.073 29.630 0.00 0.00 32.35 1.82
5179 8777 9.196552 GCTTACCAATGGCTCATTAATAATTTC 57.803 33.333 0.00 0.00 32.35 2.17
5183 8781 8.206189 ACCAATGGCTCATTAATAATTTCAAGG 58.794 33.333 0.00 0.00 32.35 3.61
5184 8782 8.423349 CCAATGGCTCATTAATAATTTCAAGGA 58.577 33.333 0.00 0.00 32.35 3.36
5185 8783 9.472361 CAATGGCTCATTAATAATTTCAAGGAG 57.528 33.333 0.84 0.00 32.35 3.69
5186 8784 8.773033 ATGGCTCATTAATAATTTCAAGGAGT 57.227 30.769 8.72 0.00 33.73 3.85
5187 8785 7.999679 TGGCTCATTAATAATTTCAAGGAGTG 58.000 34.615 8.72 0.00 33.73 3.51
5188 8786 6.920210 GGCTCATTAATAATTTCAAGGAGTGC 59.080 38.462 8.72 0.00 33.73 4.40
5189 8787 6.634436 GCTCATTAATAATTTCAAGGAGTGCG 59.366 38.462 8.72 0.00 33.73 5.34
5190 8788 7.026631 TCATTAATAATTTCAAGGAGTGCGG 57.973 36.000 0.00 0.00 0.00 5.69
5191 8789 6.826231 TCATTAATAATTTCAAGGAGTGCGGA 59.174 34.615 0.00 0.00 0.00 5.54
5192 8790 7.502226 TCATTAATAATTTCAAGGAGTGCGGAT 59.498 33.333 0.00 0.00 0.00 4.18
5193 8791 5.757850 AATAATTTCAAGGAGTGCGGATC 57.242 39.130 0.00 0.00 0.00 3.36
5194 8792 2.044123 ATTTCAAGGAGTGCGGATCC 57.956 50.000 0.00 0.00 37.07 3.36
5195 8793 0.035439 TTTCAAGGAGTGCGGATCCC 60.035 55.000 6.06 0.00 37.57 3.85
5196 8794 1.910580 TTCAAGGAGTGCGGATCCCC 61.911 60.000 6.06 0.36 37.57 4.81
5197 8795 2.041265 AAGGAGTGCGGATCCCCT 59.959 61.111 6.06 3.12 37.57 4.79
5198 8796 2.370445 AAGGAGTGCGGATCCCCTG 61.370 63.158 6.06 0.00 37.57 4.45
5199 8797 4.554036 GGAGTGCGGATCCCCTGC 62.554 72.222 6.06 4.51 34.23 4.85
5200 8798 4.899239 GAGTGCGGATCCCCTGCG 62.899 72.222 6.06 0.00 42.32 5.18
5202 8800 4.899239 GTGCGGATCCCCTGCGAG 62.899 72.222 6.06 0.00 41.93 5.03
5205 8803 4.161295 CGGATCCCCTGCGAGCAA 62.161 66.667 6.06 0.00 41.93 3.91
5206 8804 2.203126 GGATCCCCTGCGAGCAAG 60.203 66.667 0.00 0.00 0.00 4.01
5207 8805 2.203126 GATCCCCTGCGAGCAAGG 60.203 66.667 5.76 5.76 0.00 3.61
5208 8806 3.764160 GATCCCCTGCGAGCAAGGG 62.764 68.421 22.50 22.50 46.53 3.95
5210 8808 4.785453 CCCCTGCGAGCAAGGGTC 62.785 72.222 20.74 0.00 41.61 4.46
5211 8809 4.020617 CCCTGCGAGCAAGGGTCA 62.021 66.667 18.31 0.00 38.06 4.02
5212 8810 2.435586 CCTGCGAGCAAGGGTCAG 60.436 66.667 0.00 0.00 0.00 3.51
5213 8811 2.659016 CTGCGAGCAAGGGTCAGA 59.341 61.111 0.00 0.00 0.00 3.27
5214 8812 1.739562 CTGCGAGCAAGGGTCAGAC 60.740 63.158 0.00 0.00 0.00 3.51
5215 8813 2.164865 CTGCGAGCAAGGGTCAGACT 62.165 60.000 0.00 0.00 0.00 3.24
5216 8814 1.004440 GCGAGCAAGGGTCAGACTT 60.004 57.895 0.00 0.00 0.00 3.01
5217 8815 1.016653 GCGAGCAAGGGTCAGACTTC 61.017 60.000 0.00 0.00 0.00 3.01
5218 8816 0.390472 CGAGCAAGGGTCAGACTTCC 60.390 60.000 0.00 0.00 0.00 3.46
5219 8817 0.035915 GAGCAAGGGTCAGACTTCCC 60.036 60.000 0.00 4.70 43.71 3.97
5225 8823 1.783071 GGGTCAGACTTCCCTAGAGG 58.217 60.000 0.00 0.00 40.48 3.69
5226 8824 1.007359 GGGTCAGACTTCCCTAGAGGT 59.993 57.143 0.00 0.00 40.48 3.85
5227 8825 2.560158 GGGTCAGACTTCCCTAGAGGTT 60.560 54.545 0.00 0.00 40.48 3.50
5228 8826 2.761767 GGTCAGACTTCCCTAGAGGTTC 59.238 54.545 0.00 0.00 31.37 3.62
5229 8827 3.564790 GGTCAGACTTCCCTAGAGGTTCT 60.565 52.174 0.00 0.00 31.37 3.01
5230 8828 3.445805 GTCAGACTTCCCTAGAGGTTCTG 59.554 52.174 0.00 5.82 38.45 3.02
5231 8829 3.333980 TCAGACTTCCCTAGAGGTTCTGA 59.666 47.826 16.05 16.05 41.13 3.27
5232 8830 4.017037 TCAGACTTCCCTAGAGGTTCTGAT 60.017 45.833 16.05 0.00 39.81 2.90
5233 8831 4.340950 CAGACTTCCCTAGAGGTTCTGATC 59.659 50.000 14.15 0.00 38.96 2.92
5234 8832 3.292460 ACTTCCCTAGAGGTTCTGATCG 58.708 50.000 0.00 0.00 36.75 3.69
5235 8833 3.053544 ACTTCCCTAGAGGTTCTGATCGA 60.054 47.826 0.00 0.00 36.75 3.59
5236 8834 3.664551 TCCCTAGAGGTTCTGATCGAA 57.335 47.619 0.00 0.00 36.75 3.71
5237 8835 4.186077 TCCCTAGAGGTTCTGATCGAAT 57.814 45.455 0.00 0.00 36.75 3.34
5238 8836 5.320488 TCCCTAGAGGTTCTGATCGAATA 57.680 43.478 0.00 0.00 36.75 1.75
5239 8837 5.702266 TCCCTAGAGGTTCTGATCGAATAA 58.298 41.667 0.00 0.00 36.75 1.40
5240 8838 6.134055 TCCCTAGAGGTTCTGATCGAATAAA 58.866 40.000 0.00 0.00 36.75 1.40
5241 8839 6.040616 TCCCTAGAGGTTCTGATCGAATAAAC 59.959 42.308 0.00 0.00 36.75 2.01
5242 8840 6.041069 CCCTAGAGGTTCTGATCGAATAAACT 59.959 42.308 0.00 0.00 33.45 2.66
5243 8841 7.230913 CCCTAGAGGTTCTGATCGAATAAACTA 59.769 40.741 0.00 0.00 33.45 2.24
5244 8842 8.798402 CCTAGAGGTTCTGATCGAATAAACTAT 58.202 37.037 0.00 0.00 33.45 2.12
5245 8843 9.619316 CTAGAGGTTCTGATCGAATAAACTATG 57.381 37.037 0.00 0.00 33.45 2.23
5246 8844 8.239038 AGAGGTTCTGATCGAATAAACTATGA 57.761 34.615 0.00 0.00 33.45 2.15
5247 8845 8.356657 AGAGGTTCTGATCGAATAAACTATGAG 58.643 37.037 0.00 0.00 33.45 2.90
5248 8846 8.012957 AGGTTCTGATCGAATAAACTATGAGT 57.987 34.615 0.00 0.00 33.45 3.41
5249 8847 8.478877 AGGTTCTGATCGAATAAACTATGAGTT 58.521 33.333 0.00 0.00 35.36 3.01
5251 8849 9.907576 GTTCTGATCGAATAAACTATGAGTTTG 57.092 33.333 13.55 0.00 46.83 2.93
5252 8850 9.869757 TTCTGATCGAATAAACTATGAGTTTGA 57.130 29.630 13.55 4.16 46.83 2.69
5258 8856 9.869757 TCGAATAAACTATGAGTTTGATTCTGA 57.130 29.630 13.55 13.98 46.83 3.27
5264 8862 9.730705 AAACTATGAGTTTGATTCTGATTCAGA 57.269 29.630 12.38 12.38 45.83 3.27
5265 8863 9.730705 AACTATGAGTTTGATTCTGATTCAGAA 57.269 29.630 26.73 26.73 43.84 3.02
5277 8875 7.458409 TTCTGATTCAGAAAAGGATTCTTGG 57.542 36.000 23.51 0.00 45.84 3.61
5278 8876 6.782986 TCTGATTCAGAAAAGGATTCTTGGA 58.217 36.000 13.96 0.00 37.57 3.53
5279 8877 6.883217 TCTGATTCAGAAAAGGATTCTTGGAG 59.117 38.462 13.96 0.00 37.57 3.86
5280 8878 6.546484 TGATTCAGAAAAGGATTCTTGGAGT 58.454 36.000 0.00 0.00 32.75 3.85
5281 8879 7.689299 TGATTCAGAAAAGGATTCTTGGAGTA 58.311 34.615 0.00 0.00 32.75 2.59
5282 8880 8.331740 TGATTCAGAAAAGGATTCTTGGAGTAT 58.668 33.333 0.00 0.00 32.75 2.12
5283 8881 8.744568 ATTCAGAAAAGGATTCTTGGAGTATC 57.255 34.615 0.00 0.00 32.75 2.24
5295 8893 3.696306 GAGTATCCCTCTTGCAGGC 57.304 57.895 0.00 0.00 41.80 4.85
5296 8894 1.127343 GAGTATCCCTCTTGCAGGCT 58.873 55.000 0.00 0.00 41.80 4.58
5297 8895 1.069978 GAGTATCCCTCTTGCAGGCTC 59.930 57.143 0.00 0.00 41.80 4.70
5298 8896 0.249657 GTATCCCTCTTGCAGGCTCG 60.250 60.000 0.00 0.00 41.80 5.03
5299 8897 1.402896 TATCCCTCTTGCAGGCTCGG 61.403 60.000 0.00 0.00 41.80 4.63
5300 8898 4.479993 CCCTCTTGCAGGCTCGGG 62.480 72.222 3.88 3.88 41.80 5.14
5302 8900 4.093291 CTCTTGCAGGCTCGGGCT 62.093 66.667 7.48 0.00 39.66 5.19
5303 8901 2.683572 TCTTGCAGGCTCGGGCTA 60.684 61.111 7.48 0.00 36.44 3.93
5304 8902 2.202987 CTTGCAGGCTCGGGCTAG 60.203 66.667 7.48 0.14 36.44 3.42
5305 8903 4.473520 TTGCAGGCTCGGGCTAGC 62.474 66.667 7.48 12.73 41.99 3.42
5307 8905 4.473520 GCAGGCTCGGGCTAGCAA 62.474 66.667 18.24 0.00 44.64 3.91
5308 8906 2.512515 CAGGCTCGGGCTAGCAAC 60.513 66.667 18.24 7.85 44.64 4.17
5309 8907 3.003173 AGGCTCGGGCTAGCAACA 61.003 61.111 18.24 0.00 44.64 3.33
5310 8908 2.190578 GGCTCGGGCTAGCAACAT 59.809 61.111 18.24 0.00 44.64 2.71
5311 8909 2.182842 GGCTCGGGCTAGCAACATG 61.183 63.158 18.24 3.42 44.64 3.21
5312 8910 1.153369 GCTCGGGCTAGCAACATGA 60.153 57.895 18.24 5.32 42.30 3.07
5313 8911 0.533755 GCTCGGGCTAGCAACATGAT 60.534 55.000 18.24 0.00 42.30 2.45
5314 8912 1.506493 CTCGGGCTAGCAACATGATC 58.494 55.000 18.24 0.00 0.00 2.92
5315 8913 0.249447 TCGGGCTAGCAACATGATCG 60.249 55.000 18.24 6.81 0.00 3.69
5316 8914 0.249447 CGGGCTAGCAACATGATCGA 60.249 55.000 18.24 0.00 0.00 3.59
5317 8915 1.606480 CGGGCTAGCAACATGATCGAT 60.606 52.381 18.24 0.00 0.00 3.59
5318 8916 2.498167 GGGCTAGCAACATGATCGATT 58.502 47.619 18.24 0.00 0.00 3.34
5319 8917 2.481952 GGGCTAGCAACATGATCGATTC 59.518 50.000 18.24 0.00 0.00 2.52
5320 8918 3.397482 GGCTAGCAACATGATCGATTCT 58.603 45.455 18.24 0.00 0.00 2.40
5321 8919 3.812053 GGCTAGCAACATGATCGATTCTT 59.188 43.478 18.24 0.00 0.00 2.52
5322 8920 4.991056 GGCTAGCAACATGATCGATTCTTA 59.009 41.667 18.24 0.00 0.00 2.10
5323 8921 5.107298 GGCTAGCAACATGATCGATTCTTAC 60.107 44.000 18.24 0.00 0.00 2.34
5324 8922 5.463392 GCTAGCAACATGATCGATTCTTACA 59.537 40.000 10.63 0.00 0.00 2.41
5325 8923 6.146837 GCTAGCAACATGATCGATTCTTACAT 59.853 38.462 10.63 0.00 0.00 2.29
5326 8924 6.932356 AGCAACATGATCGATTCTTACATT 57.068 33.333 0.00 0.00 0.00 2.71
5327 8925 9.196552 CTAGCAACATGATCGATTCTTACATTA 57.803 33.333 0.00 0.00 0.00 1.90
5328 8926 8.081208 AGCAACATGATCGATTCTTACATTAG 57.919 34.615 0.00 0.00 0.00 1.73
5329 8927 7.712639 AGCAACATGATCGATTCTTACATTAGT 59.287 33.333 0.00 0.00 0.00 2.24
5330 8928 8.338259 GCAACATGATCGATTCTTACATTAGTT 58.662 33.333 0.00 0.00 0.00 2.24
5339 8937 8.978539 TCGATTCTTACATTAGTTATGACATGC 58.021 33.333 0.00 0.00 37.69 4.06
5340 8938 8.982685 CGATTCTTACATTAGTTATGACATGCT 58.017 33.333 0.00 0.00 37.69 3.79
5342 8940 8.662781 TTCTTACATTAGTTATGACATGCTCC 57.337 34.615 0.00 0.00 37.69 4.70
5343 8941 8.023021 TCTTACATTAGTTATGACATGCTCCT 57.977 34.615 0.00 0.00 37.69 3.69
5344 8942 7.928167 TCTTACATTAGTTATGACATGCTCCTG 59.072 37.037 0.00 1.38 37.69 3.86
5345 8943 6.239217 ACATTAGTTATGACATGCTCCTGA 57.761 37.500 0.00 0.00 37.69 3.86
5346 8944 6.653020 ACATTAGTTATGACATGCTCCTGAA 58.347 36.000 0.00 0.00 37.69 3.02
5347 8945 7.285566 ACATTAGTTATGACATGCTCCTGAAT 58.714 34.615 0.00 0.00 37.69 2.57
5348 8946 7.776969 ACATTAGTTATGACATGCTCCTGAATT 59.223 33.333 0.00 0.00 37.69 2.17
5349 8947 8.627403 CATTAGTTATGACATGCTCCTGAATTT 58.373 33.333 0.00 0.00 36.26 1.82
5350 8948 9.851686 ATTAGTTATGACATGCTCCTGAATTTA 57.148 29.630 0.00 0.00 0.00 1.40
5351 8949 9.851686 TTAGTTATGACATGCTCCTGAATTTAT 57.148 29.630 0.00 0.00 0.00 1.40
5352 8950 8.162878 AGTTATGACATGCTCCTGAATTTATG 57.837 34.615 0.00 0.00 0.00 1.90
5353 8951 7.994911 AGTTATGACATGCTCCTGAATTTATGA 59.005 33.333 0.00 0.00 0.00 2.15
5354 8952 6.630444 ATGACATGCTCCTGAATTTATGAC 57.370 37.500 0.00 0.00 0.00 3.06
5355 8953 5.499313 TGACATGCTCCTGAATTTATGACA 58.501 37.500 0.00 0.00 0.00 3.58
5356 8954 6.124340 TGACATGCTCCTGAATTTATGACAT 58.876 36.000 0.00 0.00 0.00 3.06
5357 8955 6.038936 TGACATGCTCCTGAATTTATGACATG 59.961 38.462 0.00 0.00 38.59 3.21
5358 8956 4.906065 TGCTCCTGAATTTATGACATGC 57.094 40.909 0.00 0.00 0.00 4.06
5359 8957 4.529897 TGCTCCTGAATTTATGACATGCT 58.470 39.130 0.00 0.00 0.00 3.79
5388 8986 3.009143 ACCAGAATTCACCCCTTACTCAC 59.991 47.826 8.44 0.00 0.00 3.51
5393 8991 2.536761 TCACCCCTTACTCACAAACG 57.463 50.000 0.00 0.00 0.00 3.60
5408 9006 4.021104 TCACAAACGGTCATGATCTTCTCT 60.021 41.667 4.09 0.00 0.00 3.10
5491 9089 3.533606 TTGAGCTCATCAAGGCTAGTC 57.466 47.619 19.04 0.00 43.09 2.59
5492 9090 2.744760 TGAGCTCATCAAGGCTAGTCT 58.255 47.619 13.74 0.00 39.05 3.24
5493 9091 2.429971 TGAGCTCATCAAGGCTAGTCTG 59.570 50.000 13.74 0.00 39.05 3.51
5494 9092 2.430332 GAGCTCATCAAGGCTAGTCTGT 59.570 50.000 9.40 0.00 39.05 3.41
5495 9093 2.430332 AGCTCATCAAGGCTAGTCTGTC 59.570 50.000 0.00 0.00 37.00 3.51
5496 9094 2.167281 GCTCATCAAGGCTAGTCTGTCA 59.833 50.000 0.00 0.00 0.00 3.58
5497 9095 3.737663 GCTCATCAAGGCTAGTCTGTCAG 60.738 52.174 0.00 0.00 0.00 3.51
5498 9096 3.435275 TCATCAAGGCTAGTCTGTCAGT 58.565 45.455 0.00 0.00 0.00 3.41
5499 9097 3.834813 TCATCAAGGCTAGTCTGTCAGTT 59.165 43.478 0.00 0.00 0.00 3.16
5500 9098 3.667497 TCAAGGCTAGTCTGTCAGTTG 57.333 47.619 0.00 0.00 0.00 3.16
5501 9099 3.230976 TCAAGGCTAGTCTGTCAGTTGA 58.769 45.455 0.00 0.00 0.00 3.18
5502 9100 3.834813 TCAAGGCTAGTCTGTCAGTTGAT 59.165 43.478 0.00 0.00 0.00 2.57
5503 9101 3.883830 AGGCTAGTCTGTCAGTTGATG 57.116 47.619 0.00 0.00 0.00 3.07
5504 9102 2.499289 AGGCTAGTCTGTCAGTTGATGG 59.501 50.000 0.00 0.00 0.00 3.51
5505 9103 2.234908 GGCTAGTCTGTCAGTTGATGGT 59.765 50.000 0.00 0.00 0.00 3.55
5506 9104 3.257393 GCTAGTCTGTCAGTTGATGGTG 58.743 50.000 0.00 0.00 0.00 4.17
5507 9105 3.056536 GCTAGTCTGTCAGTTGATGGTGA 60.057 47.826 0.00 0.00 0.00 4.02
5508 9106 3.674528 AGTCTGTCAGTTGATGGTGAG 57.325 47.619 0.00 0.00 0.00 3.51
5509 9107 2.301296 AGTCTGTCAGTTGATGGTGAGG 59.699 50.000 0.00 0.00 0.00 3.86
5510 9108 1.002430 TCTGTCAGTTGATGGTGAGGC 59.998 52.381 0.00 0.00 0.00 4.70
5511 9109 0.764271 TGTCAGTTGATGGTGAGGCA 59.236 50.000 0.00 0.00 0.00 4.75
5512 9110 1.160137 GTCAGTTGATGGTGAGGCAC 58.840 55.000 0.00 0.00 0.00 5.01
5513 9111 0.320683 TCAGTTGATGGTGAGGCACG 60.321 55.000 0.00 0.00 34.83 5.34
5514 9112 1.672356 AGTTGATGGTGAGGCACGC 60.672 57.895 0.00 0.00 34.83 5.34
5521 9119 4.008933 GTGAGGCACGCCCAGTCT 62.009 66.667 3.95 0.00 36.58 3.24
5522 9120 4.007644 TGAGGCACGCCCAGTCTG 62.008 66.667 3.95 0.00 36.58 3.51
5523 9121 4.767255 GAGGCACGCCCAGTCTGG 62.767 72.222 12.40 12.40 37.25 3.86
5525 9123 3.702048 GGCACGCCCAGTCTGGTA 61.702 66.667 17.85 0.00 35.17 3.25
5526 9124 2.434359 GCACGCCCAGTCTGGTAC 60.434 66.667 17.85 8.46 35.17 3.34
5527 9125 2.943978 GCACGCCCAGTCTGGTACT 61.944 63.158 17.85 0.00 39.81 2.73
5528 9126 1.215647 CACGCCCAGTCTGGTACTC 59.784 63.158 17.85 3.29 35.76 2.59
5529 9127 1.982938 ACGCCCAGTCTGGTACTCC 60.983 63.158 17.85 0.19 35.76 3.85
5530 9128 2.722201 CGCCCAGTCTGGTACTCCC 61.722 68.421 17.85 0.00 35.76 4.30
5531 9129 1.306226 GCCCAGTCTGGTACTCCCT 60.306 63.158 17.85 0.00 35.76 4.20
5532 9130 1.331399 GCCCAGTCTGGTACTCCCTC 61.331 65.000 17.85 0.00 35.76 4.30
5533 9131 0.688087 CCCAGTCTGGTACTCCCTCC 60.688 65.000 17.85 0.00 35.76 4.30
5534 9132 0.041238 CCAGTCTGGTACTCCCTCCA 59.959 60.000 11.09 0.00 35.76 3.86
5540 9138 2.938838 CTGGTACTCCCTCCAGTCTAG 58.061 57.143 3.38 0.00 44.19 2.43
5541 9139 2.242708 CTGGTACTCCCTCCAGTCTAGT 59.757 54.545 3.38 0.00 44.19 2.57
5542 9140 3.458857 CTGGTACTCCCTCCAGTCTAGTA 59.541 52.174 3.38 0.00 44.19 1.82
5543 9141 3.201708 TGGTACTCCCTCCAGTCTAGTAC 59.798 52.174 0.00 0.00 41.03 2.73
5544 9142 3.201708 GGTACTCCCTCCAGTCTAGTACA 59.798 52.174 11.70 0.00 42.68 2.90
5545 9143 4.324874 GGTACTCCCTCCAGTCTAGTACAA 60.325 50.000 11.70 0.00 42.68 2.41
5546 9144 4.399483 ACTCCCTCCAGTCTAGTACAAA 57.601 45.455 0.00 0.00 0.00 2.83
5547 9145 4.345854 ACTCCCTCCAGTCTAGTACAAAG 58.654 47.826 0.00 0.00 0.00 2.77
5548 9146 4.202695 ACTCCCTCCAGTCTAGTACAAAGT 60.203 45.833 0.00 0.00 0.00 2.66
5549 9147 4.748701 TCCCTCCAGTCTAGTACAAAGTT 58.251 43.478 0.00 0.00 0.00 2.66
5550 9148 5.895807 TCCCTCCAGTCTAGTACAAAGTTA 58.104 41.667 0.00 0.00 0.00 2.24
5551 9149 5.950549 TCCCTCCAGTCTAGTACAAAGTTAG 59.049 44.000 0.00 0.00 0.00 2.34
5552 9150 5.715753 CCCTCCAGTCTAGTACAAAGTTAGT 59.284 44.000 0.00 0.00 0.00 2.24
5553 9151 6.888632 CCCTCCAGTCTAGTACAAAGTTAGTA 59.111 42.308 0.00 0.00 0.00 1.82
5554 9152 7.560626 CCCTCCAGTCTAGTACAAAGTTAGTAT 59.439 40.741 0.00 0.00 0.00 2.12
5555 9153 9.624373 CCTCCAGTCTAGTACAAAGTTAGTATA 57.376 37.037 0.00 0.00 0.00 1.47
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.063327 CTACGCAGCTCTGACTCCG 59.937 63.158 0.29 0.00 0.00 4.63
11 12 1.071605 CTTCACAACCTACGCAGCTC 58.928 55.000 0.00 0.00 0.00 4.09
55 56 2.983592 CACCAACCAACGCCTCCC 60.984 66.667 0.00 0.00 0.00 4.30
71 72 8.506168 AACAAGAGAAATGTGAAGAACTAACA 57.494 30.769 0.00 0.00 0.00 2.41
117 118 2.251642 GCAGACGCCCGAACAACTT 61.252 57.895 0.00 0.00 0.00 2.66
179 180 2.821378 TGAAGTCCTCAAATGCCACATG 59.179 45.455 0.00 0.00 0.00 3.21
180 181 3.159213 TGAAGTCCTCAAATGCCACAT 57.841 42.857 0.00 0.00 0.00 3.21
212 213 2.363680 AGCGAATCCGTCTTCATCATCT 59.636 45.455 0.00 0.00 38.24 2.90
239 240 0.458543 CTTCATCGTCCACCTCCACG 60.459 60.000 0.00 0.00 37.36 4.94
240 241 0.741221 GCTTCATCGTCCACCTCCAC 60.741 60.000 0.00 0.00 0.00 4.02
241 242 0.904865 AGCTTCATCGTCCACCTCCA 60.905 55.000 0.00 0.00 0.00 3.86
243 244 1.363744 CAAGCTTCATCGTCCACCTC 58.636 55.000 0.00 0.00 0.00 3.85
244 245 0.036010 CCAAGCTTCATCGTCCACCT 60.036 55.000 0.00 0.00 0.00 4.00
246 247 0.798776 CACCAAGCTTCATCGTCCAC 59.201 55.000 0.00 0.00 0.00 4.02
247 248 0.684535 TCACCAAGCTTCATCGTCCA 59.315 50.000 0.00 0.00 0.00 4.02
248 249 1.667724 CATCACCAAGCTTCATCGTCC 59.332 52.381 0.00 0.00 0.00 4.79
325 344 5.818857 AGAAAACTTACTTAAAGCCGTCACA 59.181 36.000 0.00 0.00 38.93 3.58
326 345 6.296365 AGAAAACTTACTTAAAGCCGTCAC 57.704 37.500 0.00 0.00 38.93 3.67
329 348 8.143835 TGTAGTAGAAAACTTACTTAAAGCCGT 58.856 33.333 0.00 0.00 39.80 5.68
331 350 9.486497 AGTGTAGTAGAAAACTTACTTAAAGCC 57.514 33.333 0.00 0.00 39.80 4.35
370 408 9.983804 CGATTTATTAAAAAGACAAGAGGGTAC 57.016 33.333 0.00 0.00 0.00 3.34
396 434 6.696441 TTTAAGTCGGTCTCTAAGGATCTC 57.304 41.667 0.00 0.00 0.00 2.75
618 3637 0.033504 TGTTCTTCTCTGACCCACGC 59.966 55.000 0.00 0.00 0.00 5.34
619 3638 1.937108 GCTGTTCTTCTCTGACCCACG 60.937 57.143 0.00 0.00 0.00 4.94
639 3664 2.125106 GGGCAGGTAACGCAGGAG 60.125 66.667 0.00 0.00 46.39 3.69
676 3702 2.262603 CAGTACGGAGCAGCAGCA 59.737 61.111 3.17 0.00 45.49 4.41
677 3703 2.510238 CCAGTACGGAGCAGCAGC 60.510 66.667 0.00 0.00 42.56 5.25
678 3704 3.288484 TCCAGTACGGAGCAGCAG 58.712 61.111 0.00 0.00 39.64 4.24
697 3723 5.440610 TCCTGCTTTTAGATTGGATCTTCC 58.559 41.667 0.00 0.00 40.76 3.46
865 3896 0.802607 GCGTGACGAGGATTCTGGTC 60.803 60.000 10.10 9.15 45.28 4.02
955 3987 2.660064 GGCTCACACTCCCACGGAT 61.660 63.158 0.00 0.00 0.00 4.18
1311 4361 1.037579 TCATGGACCTGACGAGCGAT 61.038 55.000 0.00 0.00 0.00 4.58
2006 5071 2.025887 GGTCTGACCAAATGGATGAGGT 60.026 50.000 21.70 0.00 38.42 3.85
2066 5144 7.054124 TGAGAGTGACAGAAAATAAACTGGTT 58.946 34.615 0.00 0.00 38.30 3.67
2068 5146 7.678947 ATGAGAGTGACAGAAAATAAACTGG 57.321 36.000 0.00 0.00 38.30 4.00
2106 5184 9.727627 TTTATGTTTCCAAAATTGAATGTTTGC 57.272 25.926 0.00 0.00 34.13 3.68
2186 5273 5.430886 ACCAGTTAAACTTGTTCCGTAAGT 58.569 37.500 0.00 0.00 39.92 2.24
2281 5396 8.300286 TGCCTCGTTTCATTTCAATAATTAACA 58.700 29.630 0.00 0.00 0.00 2.41
2285 5400 7.818930 ACATTGCCTCGTTTCATTTCAATAATT 59.181 29.630 0.00 0.00 0.00 1.40
2293 5408 9.086336 CATAATTAACATTGCCTCGTTTCATTT 57.914 29.630 0.00 0.00 0.00 2.32
2348 5463 1.070134 AGCTGTTCTGTCGTTTAGCCA 59.930 47.619 0.00 0.00 31.82 4.75
2399 5514 5.016245 AGACCCTAAAAAGAATCATTCCCCA 59.984 40.000 0.00 0.00 0.00 4.96
2411 5527 9.955102 AACTACCTAATTGTAGACCCTAAAAAG 57.045 33.333 9.33 0.00 40.56 2.27
2533 5649 8.812147 TTGTGTAATCTGTACTTGTAGAACAG 57.188 34.615 0.00 0.00 41.58 3.16
2798 5914 4.320714 GCCCGAGTTCCGAAATAACTTTTT 60.321 41.667 0.00 0.00 41.76 1.94
2805 5921 0.979187 AGGGCCCGAGTTCCGAAATA 60.979 55.000 18.44 0.00 41.76 1.40
2867 5987 9.929722 ACACGCATAACACAAATATATGTTTAG 57.070 29.630 0.00 0.00 39.67 1.85
2888 6008 4.925054 TGACTACAGTGGTTTTATACACGC 59.075 41.667 0.00 0.00 42.25 5.34
2954 6074 8.391106 CACCGTGAAAAATTCAAATGGTTTTAA 58.609 29.630 9.08 0.00 42.15 1.52
2987 6107 5.798434 ACAAAAACAGCTTAGACAACGAAAC 59.202 36.000 0.00 0.00 0.00 2.78
2992 6112 7.414436 TGTATGACAAAAACAGCTTAGACAAC 58.586 34.615 0.00 0.00 0.00 3.32
3009 6129 6.700352 TGACAAACTCATCAGATGTATGACA 58.300 36.000 10.34 8.72 30.46 3.58
3177 6297 3.006752 TGGACTCCATTGTTTGCAAATCC 59.993 43.478 16.21 15.17 38.21 3.01
3205 6325 6.995091 TGATCTCTCAGACGATTAATCTCTGA 59.005 38.462 27.55 27.55 38.03 3.27
3219 6339 6.194967 TGGGTATAGTTGTTGATCTCTCAGA 58.805 40.000 0.00 0.00 31.68 3.27
3338 6458 3.501349 GCTCCATGGAGAGGTATCAGTA 58.499 50.000 40.29 3.23 44.53 2.74
3339 6459 2.324541 GCTCCATGGAGAGGTATCAGT 58.675 52.381 40.29 0.00 44.53 3.41
3351 6471 6.208204 CAGGAATAAAATAGAAGGCTCCATGG 59.792 42.308 4.97 4.97 0.00 3.66
3370 6490 4.278419 GTGCAAAACACTACCTTCAGGAAT 59.722 41.667 0.00 0.00 46.41 3.01
3388 6585 1.490490 AGTGGGAGTTCTTGAGTGCAA 59.510 47.619 0.00 0.00 0.00 4.08
3517 6797 8.668510 AATGTATATGACTTGTCCTGATTCAC 57.331 34.615 0.00 0.00 0.00 3.18
3686 7249 2.770164 ACACTCATAACAGGAGGTGC 57.230 50.000 0.00 0.00 36.70 5.01
3687 7250 5.794894 AGTTTACACTCATAACAGGAGGTG 58.205 41.667 0.00 0.00 36.70 4.00
3713 7276 9.319143 CCATAGTCTAATGTTTCTTCTTACAGG 57.681 37.037 0.00 0.00 0.00 4.00
3749 7335 8.464404 CATCCTGTCAATGAGAAAATAACACAT 58.536 33.333 0.00 0.00 0.00 3.21
3765 7352 0.323633 CATGTGCCCCATCCTGTCAA 60.324 55.000 0.00 0.00 0.00 3.18
4018 7605 0.468029 AGTTGGCCTTCAGGTTGGTG 60.468 55.000 3.32 0.00 37.57 4.17
4081 7668 3.467043 CATATCGTGCCAAGCATGC 57.533 52.632 10.51 10.51 44.29 4.06
4180 7767 2.955660 CCTCAGCTTTATCTCCTCGTCT 59.044 50.000 0.00 0.00 0.00 4.18
4189 7776 4.641989 TGAATCCTTTGCCTCAGCTTTATC 59.358 41.667 0.00 0.00 40.80 1.75
4246 7833 2.464459 CGCCCAATCCTCGAACTGC 61.464 63.158 0.00 0.00 0.00 4.40
4507 8094 2.932614 CGACCACAGATCCTTGAACATC 59.067 50.000 0.00 0.00 0.00 3.06
4612 8199 1.338674 ACAGCAACAGCGCAACCTATA 60.339 47.619 11.47 0.00 0.00 1.31
4629 8216 9.988350 ATTTTCGCACTTGAACTAAATATACAG 57.012 29.630 0.00 0.00 0.00 2.74
4650 8238 2.879026 GGCTATCCGTCTTCCCATTTTC 59.121 50.000 0.00 0.00 0.00 2.29
4663 8251 1.472480 CCAAACAACAAGGGCTATCCG 59.528 52.381 0.00 0.00 41.52 4.18
4666 8254 2.171003 GCTCCAAACAACAAGGGCTAT 58.829 47.619 0.00 0.00 0.00 2.97
4687 8275 2.987413 ACATGCATTACAACACCGTG 57.013 45.000 0.00 0.00 0.00 4.94
4844 8437 5.351458 GGTTGTATCATGAAAATGCCCTTC 58.649 41.667 0.00 0.00 0.00 3.46
4960 8553 4.090090 TCCTGCATCCTAGGCTACTATTC 58.910 47.826 2.96 0.00 35.23 1.75
4989 8582 6.091441 GTGGAAATGCTGTAGTAGTTTCAGAG 59.909 42.308 6.63 0.00 32.04 3.35
4992 8585 5.001232 GGTGGAAATGCTGTAGTAGTTTCA 58.999 41.667 0.00 0.00 32.04 2.69
5014 8607 1.423921 AGGCCTAATAAACCCGGATGG 59.576 52.381 1.29 0.00 41.37 3.51
5015 8608 2.951229 AGGCCTAATAAACCCGGATG 57.049 50.000 1.29 0.00 0.00 3.51
5016 8609 3.958147 CAAAAGGCCTAATAAACCCGGAT 59.042 43.478 5.16 0.00 0.00 4.18
5090 8688 9.944376 AGTACAATATTATATTCTTCGTGGCAT 57.056 29.630 0.00 0.00 0.00 4.40
5091 8689 9.772973 AAGTACAATATTATATTCTTCGTGGCA 57.227 29.630 0.00 0.00 0.00 4.92
5106 8704 9.703892 CTAGCTATGCTTCAGAAGTACAATATT 57.296 33.333 11.94 0.00 40.44 1.28
5107 8705 8.310382 CCTAGCTATGCTTCAGAAGTACAATAT 58.690 37.037 11.94 0.00 40.44 1.28
5108 8706 7.255977 CCCTAGCTATGCTTCAGAAGTACAATA 60.256 40.741 11.94 4.90 40.44 1.90
5109 8707 6.463614 CCCTAGCTATGCTTCAGAAGTACAAT 60.464 42.308 11.94 4.06 40.44 2.71
5110 8708 5.163405 CCCTAGCTATGCTTCAGAAGTACAA 60.163 44.000 11.94 0.00 40.44 2.41
5111 8709 4.342378 CCCTAGCTATGCTTCAGAAGTACA 59.658 45.833 11.94 2.67 40.44 2.90
5112 8710 4.585162 TCCCTAGCTATGCTTCAGAAGTAC 59.415 45.833 11.94 0.00 40.44 2.73
5113 8711 4.804597 TCCCTAGCTATGCTTCAGAAGTA 58.195 43.478 11.94 7.76 40.44 2.24
5114 8712 3.647636 TCCCTAGCTATGCTTCAGAAGT 58.352 45.455 11.94 0.00 40.44 3.01
5115 8713 4.888326 ATCCCTAGCTATGCTTCAGAAG 57.112 45.455 5.72 5.72 40.44 2.85
5116 8714 6.498303 TCATTATCCCTAGCTATGCTTCAGAA 59.502 38.462 0.00 0.00 40.44 3.02
5117 8715 6.019108 TCATTATCCCTAGCTATGCTTCAGA 58.981 40.000 0.00 0.00 40.44 3.27
5118 8716 6.105333 GTCATTATCCCTAGCTATGCTTCAG 58.895 44.000 0.00 0.00 40.44 3.02
5119 8717 5.543790 TGTCATTATCCCTAGCTATGCTTCA 59.456 40.000 0.00 0.00 40.44 3.02
5120 8718 6.042638 TGTCATTATCCCTAGCTATGCTTC 57.957 41.667 0.00 0.00 40.44 3.86
5121 8719 5.782331 TCTGTCATTATCCCTAGCTATGCTT 59.218 40.000 0.00 0.00 40.44 3.91
5122 8720 5.336945 TCTGTCATTATCCCTAGCTATGCT 58.663 41.667 0.00 0.00 43.41 3.79
5123 8721 5.667539 TCTGTCATTATCCCTAGCTATGC 57.332 43.478 0.00 0.00 0.00 3.14
5124 8722 7.658525 AGATCTGTCATTATCCCTAGCTATG 57.341 40.000 0.00 0.00 0.00 2.23
5125 8723 7.782644 GGTAGATCTGTCATTATCCCTAGCTAT 59.217 40.741 5.18 0.00 0.00 2.97
5126 8724 7.120051 GGTAGATCTGTCATTATCCCTAGCTA 58.880 42.308 5.18 0.00 0.00 3.32
5127 8725 5.955355 GGTAGATCTGTCATTATCCCTAGCT 59.045 44.000 5.18 0.00 0.00 3.32
5128 8726 5.717178 TGGTAGATCTGTCATTATCCCTAGC 59.283 44.000 5.18 0.00 0.00 3.42
5129 8727 6.127479 GCTGGTAGATCTGTCATTATCCCTAG 60.127 46.154 5.18 0.00 0.00 3.02
5130 8728 5.717178 GCTGGTAGATCTGTCATTATCCCTA 59.283 44.000 5.18 0.00 0.00 3.53
5131 8729 4.530161 GCTGGTAGATCTGTCATTATCCCT 59.470 45.833 5.18 0.00 0.00 4.20
5132 8730 4.530161 AGCTGGTAGATCTGTCATTATCCC 59.470 45.833 5.18 0.00 0.00 3.85
5133 8731 5.736951 AGCTGGTAGATCTGTCATTATCC 57.263 43.478 5.18 0.00 0.00 2.59
5134 8732 7.093992 GGTAAGCTGGTAGATCTGTCATTATC 58.906 42.308 5.18 0.00 0.00 1.75
5135 8733 6.554982 TGGTAAGCTGGTAGATCTGTCATTAT 59.445 38.462 5.18 0.00 0.00 1.28
5136 8734 5.897250 TGGTAAGCTGGTAGATCTGTCATTA 59.103 40.000 5.18 0.00 0.00 1.90
5137 8735 4.716784 TGGTAAGCTGGTAGATCTGTCATT 59.283 41.667 5.18 0.00 0.00 2.57
5138 8736 4.290093 TGGTAAGCTGGTAGATCTGTCAT 58.710 43.478 5.18 0.00 0.00 3.06
5139 8737 3.708451 TGGTAAGCTGGTAGATCTGTCA 58.292 45.455 5.18 2.58 0.00 3.58
5140 8738 4.737855 TTGGTAAGCTGGTAGATCTGTC 57.262 45.455 5.18 0.00 0.00 3.51
5141 8739 4.141620 CCATTGGTAAGCTGGTAGATCTGT 60.142 45.833 5.18 0.00 0.00 3.41
5142 8740 4.384056 CCATTGGTAAGCTGGTAGATCTG 58.616 47.826 5.18 0.00 0.00 2.90
5143 8741 3.181450 GCCATTGGTAAGCTGGTAGATCT 60.181 47.826 4.26 0.00 32.42 2.75
5144 8742 3.142174 GCCATTGGTAAGCTGGTAGATC 58.858 50.000 4.26 0.00 32.42 2.75
5145 8743 2.780010 AGCCATTGGTAAGCTGGTAGAT 59.220 45.455 4.26 0.00 34.99 1.98
5146 8744 2.170607 GAGCCATTGGTAAGCTGGTAGA 59.829 50.000 4.26 0.00 36.87 2.59
5147 8745 2.092968 TGAGCCATTGGTAAGCTGGTAG 60.093 50.000 4.26 0.00 36.87 3.18
5148 8746 1.912731 TGAGCCATTGGTAAGCTGGTA 59.087 47.619 4.26 0.00 36.87 3.25
5149 8747 0.698238 TGAGCCATTGGTAAGCTGGT 59.302 50.000 4.26 0.00 36.87 4.00
5150 8748 2.062971 ATGAGCCATTGGTAAGCTGG 57.937 50.000 4.26 0.00 36.87 4.85
5151 8749 5.779529 ATTAATGAGCCATTGGTAAGCTG 57.220 39.130 4.26 0.00 36.87 4.24
5152 8750 8.482852 AATTATTAATGAGCCATTGGTAAGCT 57.517 30.769 4.26 0.00 40.24 3.74
5153 8751 9.196552 GAAATTATTAATGAGCCATTGGTAAGC 57.803 33.333 4.26 0.00 35.54 3.09
5157 8755 8.206189 CCTTGAAATTATTAATGAGCCATTGGT 58.794 33.333 4.26 0.00 35.54 3.67
5158 8756 8.423349 TCCTTGAAATTATTAATGAGCCATTGG 58.577 33.333 9.79 0.00 35.54 3.16
5159 8757 9.472361 CTCCTTGAAATTATTAATGAGCCATTG 57.528 33.333 9.79 0.00 35.54 2.82
5160 8758 9.205513 ACTCCTTGAAATTATTAATGAGCCATT 57.794 29.630 0.00 5.84 37.80 3.16
5161 8759 8.636213 CACTCCTTGAAATTATTAATGAGCCAT 58.364 33.333 0.00 0.00 0.00 4.40
5162 8760 7.416664 GCACTCCTTGAAATTATTAATGAGCCA 60.417 37.037 0.00 0.00 0.00 4.75
5163 8761 6.920210 GCACTCCTTGAAATTATTAATGAGCC 59.080 38.462 0.00 0.00 0.00 4.70
5164 8762 6.634436 CGCACTCCTTGAAATTATTAATGAGC 59.366 38.462 0.00 0.00 0.00 4.26
5165 8763 7.012327 TCCGCACTCCTTGAAATTATTAATGAG 59.988 37.037 0.00 0.00 0.00 2.90
5166 8764 6.826231 TCCGCACTCCTTGAAATTATTAATGA 59.174 34.615 0.00 0.00 0.00 2.57
5167 8765 7.026631 TCCGCACTCCTTGAAATTATTAATG 57.973 36.000 0.00 0.00 0.00 1.90
5168 8766 7.040409 GGATCCGCACTCCTTGAAATTATTAAT 60.040 37.037 0.00 0.00 0.00 1.40
5169 8767 6.262273 GGATCCGCACTCCTTGAAATTATTAA 59.738 38.462 0.00 0.00 0.00 1.40
5170 8768 5.763204 GGATCCGCACTCCTTGAAATTATTA 59.237 40.000 0.00 0.00 0.00 0.98
5171 8769 4.580580 GGATCCGCACTCCTTGAAATTATT 59.419 41.667 0.00 0.00 0.00 1.40
5172 8770 4.137543 GGATCCGCACTCCTTGAAATTAT 58.862 43.478 0.00 0.00 0.00 1.28
5173 8771 3.541632 GGATCCGCACTCCTTGAAATTA 58.458 45.455 0.00 0.00 0.00 1.40
5174 8772 2.369394 GGATCCGCACTCCTTGAAATT 58.631 47.619 0.00 0.00 0.00 1.82
5175 8773 1.408822 GGGATCCGCACTCCTTGAAAT 60.409 52.381 5.45 0.00 33.05 2.17
5176 8774 0.035439 GGGATCCGCACTCCTTGAAA 60.035 55.000 5.45 0.00 33.05 2.69
5177 8775 1.602237 GGGATCCGCACTCCTTGAA 59.398 57.895 5.45 0.00 33.05 2.69
5178 8776 2.367202 GGGGATCCGCACTCCTTGA 61.367 63.158 23.21 0.00 33.05 3.02
5179 8777 2.190578 GGGGATCCGCACTCCTTG 59.809 66.667 23.21 0.00 33.05 3.61
5180 8778 2.041265 AGGGGATCCGCACTCCTT 59.959 61.111 28.74 5.88 38.33 3.36
5181 8779 2.765807 CAGGGGATCCGCACTCCT 60.766 66.667 28.74 15.43 38.33 3.69
5182 8780 4.554036 GCAGGGGATCCGCACTCC 62.554 72.222 28.74 13.33 38.33 3.85
5183 8781 4.899239 CGCAGGGGATCCGCACTC 62.899 72.222 28.74 16.06 38.33 3.51
5185 8783 4.899239 CTCGCAGGGGATCCGCAC 62.899 72.222 28.74 19.25 38.33 5.34
5188 8786 4.161295 TTGCTCGCAGGGGATCCG 62.161 66.667 5.45 0.00 38.33 4.18
5189 8787 2.203126 CTTGCTCGCAGGGGATCC 60.203 66.667 1.92 1.92 0.00 3.36
5190 8788 2.203126 CCTTGCTCGCAGGGGATC 60.203 66.667 11.82 0.00 39.23 3.36
5195 8793 2.435586 CTGACCCTTGCTCGCAGG 60.436 66.667 0.00 0.00 0.00 4.85
5196 8794 1.739562 GTCTGACCCTTGCTCGCAG 60.740 63.158 0.00 0.00 0.00 5.18
5197 8795 1.758440 AAGTCTGACCCTTGCTCGCA 61.758 55.000 3.76 0.00 0.00 5.10
5198 8796 1.004440 AAGTCTGACCCTTGCTCGC 60.004 57.895 3.76 0.00 0.00 5.03
5199 8797 0.390472 GGAAGTCTGACCCTTGCTCG 60.390 60.000 3.76 0.00 0.00 5.03
5200 8798 0.035915 GGGAAGTCTGACCCTTGCTC 60.036 60.000 3.76 0.00 42.56 4.26
5201 8799 2.070639 GGGAAGTCTGACCCTTGCT 58.929 57.895 3.76 0.00 42.56 3.91
5202 8800 4.724262 GGGAAGTCTGACCCTTGC 57.276 61.111 3.76 0.00 42.56 4.01
5206 8804 1.007359 ACCTCTAGGGAAGTCTGACCC 59.993 57.143 3.76 7.15 45.88 4.46
5207 8805 2.535836 ACCTCTAGGGAAGTCTGACC 57.464 55.000 3.76 0.00 40.27 4.02
5208 8806 3.445805 CAGAACCTCTAGGGAAGTCTGAC 59.554 52.174 10.16 0.00 40.73 3.51
5209 8807 3.333980 TCAGAACCTCTAGGGAAGTCTGA 59.666 47.826 13.02 13.02 42.57 3.27
5210 8808 3.702792 TCAGAACCTCTAGGGAAGTCTG 58.297 50.000 9.65 9.65 40.21 3.51
5211 8809 4.542697 GATCAGAACCTCTAGGGAAGTCT 58.457 47.826 0.20 0.00 40.27 3.24
5212 8810 3.316868 CGATCAGAACCTCTAGGGAAGTC 59.683 52.174 0.20 0.00 40.27 3.01
5213 8811 3.053544 TCGATCAGAACCTCTAGGGAAGT 60.054 47.826 0.20 0.00 40.27 3.01
5214 8812 3.556999 TCGATCAGAACCTCTAGGGAAG 58.443 50.000 0.20 0.00 40.27 3.46
5215 8813 3.664551 TCGATCAGAACCTCTAGGGAA 57.335 47.619 0.20 0.00 40.27 3.97
5216 8814 3.664551 TTCGATCAGAACCTCTAGGGA 57.335 47.619 0.20 0.00 40.27 4.20
5217 8815 6.041069 AGTTTATTCGATCAGAACCTCTAGGG 59.959 42.308 0.20 0.00 42.39 3.53
5218 8816 7.045126 AGTTTATTCGATCAGAACCTCTAGG 57.955 40.000 0.00 0.00 42.39 3.02
5219 8817 9.619316 CATAGTTTATTCGATCAGAACCTCTAG 57.381 37.037 0.00 0.00 42.39 2.43
5220 8818 9.350951 TCATAGTTTATTCGATCAGAACCTCTA 57.649 33.333 0.00 1.30 42.39 2.43
5221 8819 8.239038 TCATAGTTTATTCGATCAGAACCTCT 57.761 34.615 0.00 0.00 42.39 3.69
5222 8820 8.138712 ACTCATAGTTTATTCGATCAGAACCTC 58.861 37.037 0.00 0.00 42.39 3.85
5223 8821 8.012957 ACTCATAGTTTATTCGATCAGAACCT 57.987 34.615 0.00 0.00 42.39 3.50
5224 8822 8.649973 AACTCATAGTTTATTCGATCAGAACC 57.350 34.615 0.00 0.00 37.05 3.62
5225 8823 9.907576 CAAACTCATAGTTTATTCGATCAGAAC 57.092 33.333 4.81 0.00 45.84 3.01
5226 8824 9.869757 TCAAACTCATAGTTTATTCGATCAGAA 57.130 29.630 4.81 0.00 45.84 3.02
5232 8830 9.869757 TCAGAATCAAACTCATAGTTTATTCGA 57.130 29.630 4.81 11.44 45.84 3.71
5238 8836 9.730705 TCTGAATCAGAATCAAACTCATAGTTT 57.269 29.630 10.99 0.00 42.00 2.66
5239 8837 9.730705 TTCTGAATCAGAATCAAACTCATAGTT 57.269 29.630 20.61 0.00 44.27 2.24
5253 8851 7.233632 TCCAAGAATCCTTTTCTGAATCAGAA 58.766 34.615 20.61 20.61 46.93 3.02
5254 8852 6.782986 TCCAAGAATCCTTTTCTGAATCAGA 58.217 36.000 9.18 9.18 38.87 3.27
5255 8853 6.658391 ACTCCAAGAATCCTTTTCTGAATCAG 59.342 38.462 3.38 3.38 0.00 2.90
5256 8854 6.546484 ACTCCAAGAATCCTTTTCTGAATCA 58.454 36.000 0.00 0.00 0.00 2.57
5257 8855 8.744568 ATACTCCAAGAATCCTTTTCTGAATC 57.255 34.615 0.00 0.00 0.00 2.52
5258 8856 7.777440 GGATACTCCAAGAATCCTTTTCTGAAT 59.223 37.037 0.00 0.00 36.93 2.57
5259 8857 7.112779 GGATACTCCAAGAATCCTTTTCTGAA 58.887 38.462 0.00 0.00 36.93 3.02
5260 8858 6.353082 GGGATACTCCAAGAATCCTTTTCTGA 60.353 42.308 0.00 0.00 38.64 3.27
5261 8859 5.825151 GGGATACTCCAAGAATCCTTTTCTG 59.175 44.000 0.00 0.00 38.64 3.02
5262 8860 5.733647 AGGGATACTCCAAGAATCCTTTTCT 59.266 40.000 0.00 0.00 38.64 2.52
5263 8861 6.007485 AGGGATACTCCAAGAATCCTTTTC 57.993 41.667 0.00 0.00 38.64 2.29
5264 8862 6.007485 GAGGGATACTCCAAGAATCCTTTT 57.993 41.667 0.00 0.00 40.49 2.27
5265 8863 5.638530 GAGGGATACTCCAAGAATCCTTT 57.361 43.478 0.00 0.00 40.49 3.11
5277 8875 1.069978 GAGCCTGCAAGAGGGATACTC 59.930 57.143 0.00 0.00 46.98 2.59
5278 8876 1.127343 GAGCCTGCAAGAGGGATACT 58.873 55.000 0.00 0.00 43.07 2.12
5279 8877 0.249657 CGAGCCTGCAAGAGGGATAC 60.250 60.000 0.00 0.00 43.07 2.24
5280 8878 1.402896 CCGAGCCTGCAAGAGGGATA 61.403 60.000 0.00 0.00 43.07 2.59
5281 8879 2.739996 CCGAGCCTGCAAGAGGGAT 61.740 63.158 0.00 0.00 43.07 3.85
5282 8880 3.393970 CCGAGCCTGCAAGAGGGA 61.394 66.667 0.00 0.00 43.07 4.20
5283 8881 4.479993 CCCGAGCCTGCAAGAGGG 62.480 72.222 0.00 0.00 43.07 4.30
5285 8883 2.641439 CTAGCCCGAGCCTGCAAGAG 62.641 65.000 0.00 0.00 41.25 2.85
5286 8884 2.683572 TAGCCCGAGCCTGCAAGA 60.684 61.111 0.00 0.00 41.25 3.02
5287 8885 2.202987 CTAGCCCGAGCCTGCAAG 60.203 66.667 0.00 0.00 41.25 4.01
5288 8886 4.473520 GCTAGCCCGAGCCTGCAA 62.474 66.667 2.29 0.00 41.25 4.08
5290 8888 4.473520 TTGCTAGCCCGAGCCTGC 62.474 66.667 13.29 0.00 42.11 4.85
5291 8889 2.512515 GTTGCTAGCCCGAGCCTG 60.513 66.667 13.29 0.00 42.11 4.85
5292 8890 2.370445 ATGTTGCTAGCCCGAGCCT 61.370 57.895 13.29 0.00 42.11 4.58
5293 8891 2.182842 CATGTTGCTAGCCCGAGCC 61.183 63.158 13.29 0.00 42.11 4.70
5294 8892 0.533755 ATCATGTTGCTAGCCCGAGC 60.534 55.000 13.29 0.00 43.16 5.03
5295 8893 1.506493 GATCATGTTGCTAGCCCGAG 58.494 55.000 13.29 0.00 0.00 4.63
5296 8894 0.249447 CGATCATGTTGCTAGCCCGA 60.249 55.000 13.29 1.65 0.00 5.14
5297 8895 0.249447 TCGATCATGTTGCTAGCCCG 60.249 55.000 13.29 3.27 0.00 6.13
5298 8896 2.175878 ATCGATCATGTTGCTAGCCC 57.824 50.000 13.29 3.17 0.00 5.19
5299 8897 3.397482 AGAATCGATCATGTTGCTAGCC 58.603 45.455 13.29 0.00 0.00 3.93
5300 8898 5.463392 TGTAAGAATCGATCATGTTGCTAGC 59.537 40.000 8.10 8.10 0.00 3.42
5301 8899 7.649370 ATGTAAGAATCGATCATGTTGCTAG 57.351 36.000 0.00 0.00 0.00 3.42
5302 8900 9.196552 CTAATGTAAGAATCGATCATGTTGCTA 57.803 33.333 0.00 0.00 0.00 3.49
5303 8901 6.932356 AATGTAAGAATCGATCATGTTGCT 57.068 33.333 0.00 0.00 0.00 3.91
5304 8902 7.855545 ACTAATGTAAGAATCGATCATGTTGC 58.144 34.615 0.00 0.00 0.00 4.17
5313 8911 8.978539 GCATGTCATAACTAATGTAAGAATCGA 58.021 33.333 0.00 0.00 36.89 3.59
5314 8912 8.982685 AGCATGTCATAACTAATGTAAGAATCG 58.017 33.333 0.00 0.00 36.89 3.34
5316 8914 9.277783 GGAGCATGTCATAACTAATGTAAGAAT 57.722 33.333 0.00 0.00 36.89 2.40
5317 8915 8.486210 AGGAGCATGTCATAACTAATGTAAGAA 58.514 33.333 0.00 0.00 36.89 2.52
5318 8916 7.928167 CAGGAGCATGTCATAACTAATGTAAGA 59.072 37.037 0.00 0.00 36.89 2.10
5319 8917 7.928167 TCAGGAGCATGTCATAACTAATGTAAG 59.072 37.037 0.00 0.00 36.89 2.34
5320 8918 7.791029 TCAGGAGCATGTCATAACTAATGTAA 58.209 34.615 0.00 0.00 36.89 2.41
5321 8919 7.360113 TCAGGAGCATGTCATAACTAATGTA 57.640 36.000 0.00 0.00 36.89 2.29
5322 8920 6.239217 TCAGGAGCATGTCATAACTAATGT 57.761 37.500 0.00 0.00 36.89 2.71
5323 8921 7.741027 ATTCAGGAGCATGTCATAACTAATG 57.259 36.000 0.00 0.00 36.88 1.90
5324 8922 8.757982 AAATTCAGGAGCATGTCATAACTAAT 57.242 30.769 0.00 0.00 0.00 1.73
5325 8923 9.851686 ATAAATTCAGGAGCATGTCATAACTAA 57.148 29.630 0.00 0.00 0.00 2.24
5326 8924 9.276590 CATAAATTCAGGAGCATGTCATAACTA 57.723 33.333 0.00 0.00 0.00 2.24
5327 8925 7.994911 TCATAAATTCAGGAGCATGTCATAACT 59.005 33.333 0.00 0.00 0.00 2.24
5328 8926 8.072567 GTCATAAATTCAGGAGCATGTCATAAC 58.927 37.037 0.00 0.00 0.00 1.89
5329 8927 7.774625 TGTCATAAATTCAGGAGCATGTCATAA 59.225 33.333 0.00 0.00 0.00 1.90
5330 8928 7.281841 TGTCATAAATTCAGGAGCATGTCATA 58.718 34.615 0.00 0.00 0.00 2.15
5331 8929 6.124340 TGTCATAAATTCAGGAGCATGTCAT 58.876 36.000 0.00 0.00 0.00 3.06
5332 8930 5.499313 TGTCATAAATTCAGGAGCATGTCA 58.501 37.500 0.00 0.00 0.00 3.58
5333 8931 6.436261 CATGTCATAAATTCAGGAGCATGTC 58.564 40.000 0.00 0.00 0.00 3.06
5334 8932 5.221185 GCATGTCATAAATTCAGGAGCATGT 60.221 40.000 0.00 0.00 35.16 3.21
5335 8933 5.009710 AGCATGTCATAAATTCAGGAGCATG 59.990 40.000 0.00 0.00 35.62 4.06
5336 8934 5.009710 CAGCATGTCATAAATTCAGGAGCAT 59.990 40.000 0.00 0.00 0.00 3.79
5337 8935 4.337274 CAGCATGTCATAAATTCAGGAGCA 59.663 41.667 0.00 0.00 0.00 4.26
5338 8936 4.577693 TCAGCATGTCATAAATTCAGGAGC 59.422 41.667 0.00 0.00 37.40 4.70
5339 8937 6.262496 ACATCAGCATGTCATAAATTCAGGAG 59.738 38.462 0.00 0.00 39.15 3.69
5340 8938 6.124340 ACATCAGCATGTCATAAATTCAGGA 58.876 36.000 0.00 0.00 39.15 3.86
5341 8939 6.387041 ACATCAGCATGTCATAAATTCAGG 57.613 37.500 0.00 0.00 39.15 3.86
5357 8955 2.421424 GGTGAATTCTGGTGACATCAGC 59.579 50.000 11.09 4.10 44.06 4.26
5358 8956 3.012518 GGGTGAATTCTGGTGACATCAG 58.987 50.000 9.61 9.61 41.51 2.90
5359 8957 2.290896 GGGGTGAATTCTGGTGACATCA 60.291 50.000 7.05 0.00 41.51 3.07
5388 8986 3.063180 GCAGAGAAGATCATGACCGTTTG 59.937 47.826 0.00 0.00 0.00 2.93
5393 8991 1.487976 TGGGCAGAGAAGATCATGACC 59.512 52.381 0.00 0.00 41.56 4.02
5408 9006 1.225426 GCCTCTGTCATGATGGGCA 59.775 57.895 19.21 5.28 39.38 5.36
5485 9083 3.056536 TCACCATCAACTGACAGACTAGC 60.057 47.826 10.08 0.00 0.00 3.42
5486 9084 4.381398 CCTCACCATCAACTGACAGACTAG 60.381 50.000 10.08 0.00 0.00 2.57
5487 9085 3.511540 CCTCACCATCAACTGACAGACTA 59.488 47.826 10.08 0.00 0.00 2.59
5488 9086 2.301296 CCTCACCATCAACTGACAGACT 59.699 50.000 10.08 0.00 0.00 3.24
5489 9087 2.693069 CCTCACCATCAACTGACAGAC 58.307 52.381 10.08 0.00 0.00 3.51
5490 9088 1.002430 GCCTCACCATCAACTGACAGA 59.998 52.381 10.08 0.00 0.00 3.41
5491 9089 1.271001 TGCCTCACCATCAACTGACAG 60.271 52.381 0.00 0.00 0.00 3.51
5492 9090 0.764271 TGCCTCACCATCAACTGACA 59.236 50.000 0.00 0.00 0.00 3.58
5493 9091 1.160137 GTGCCTCACCATCAACTGAC 58.840 55.000 0.00 0.00 0.00 3.51
5494 9092 0.320683 CGTGCCTCACCATCAACTGA 60.321 55.000 0.00 0.00 0.00 3.41
5495 9093 1.915614 GCGTGCCTCACCATCAACTG 61.916 60.000 0.00 0.00 0.00 3.16
5496 9094 1.672356 GCGTGCCTCACCATCAACT 60.672 57.895 0.00 0.00 0.00 3.16
5497 9095 2.690778 GGCGTGCCTCACCATCAAC 61.691 63.158 2.98 0.00 0.00 3.18
5498 9096 2.359850 GGCGTGCCTCACCATCAA 60.360 61.111 2.98 0.00 0.00 2.57
5499 9097 4.408821 GGGCGTGCCTCACCATCA 62.409 66.667 11.25 0.00 36.10 3.07
5500 9098 4.408821 TGGGCGTGCCTCACCATC 62.409 66.667 11.25 0.00 36.10 3.51
5501 9099 4.415150 CTGGGCGTGCCTCACCAT 62.415 66.667 11.25 0.00 36.10 3.55
5504 9102 4.008933 AGACTGGGCGTGCCTCAC 62.009 66.667 11.25 0.00 36.10 3.51
5505 9103 4.007644 CAGACTGGGCGTGCCTCA 62.008 66.667 11.25 6.38 36.10 3.86
5506 9104 4.767255 CCAGACTGGGCGTGCCTC 62.767 72.222 14.26 0.41 32.67 4.70
5508 9106 3.702048 TACCAGACTGGGCGTGCC 61.702 66.667 25.34 1.16 43.37 5.01
5509 9107 2.434359 GTACCAGACTGGGCGTGC 60.434 66.667 25.34 4.72 43.37 5.34
5510 9108 1.215647 GAGTACCAGACTGGGCGTG 59.784 63.158 25.34 0.10 43.37 5.34
5511 9109 1.982938 GGAGTACCAGACTGGGCGT 60.983 63.158 25.34 8.87 43.37 5.68
5512 9110 2.722201 GGGAGTACCAGACTGGGCG 61.722 68.421 25.34 0.87 43.37 6.13
5513 9111 1.306226 AGGGAGTACCAGACTGGGC 60.306 63.158 25.34 16.82 43.37 5.36
5514 9112 0.688087 GGAGGGAGTACCAGACTGGG 60.688 65.000 25.34 7.84 43.37 4.45
5515 9113 0.041238 TGGAGGGAGTACCAGACTGG 59.959 60.000 20.45 20.45 45.02 4.00
5516 9114 3.691820 TGGAGGGAGTACCAGACTG 57.308 57.895 0.00 0.00 43.89 3.51
5521 9119 2.285707 ACTAGACTGGAGGGAGTACCA 58.714 52.381 0.00 0.00 43.89 3.25
5522 9120 3.201708 TGTACTAGACTGGAGGGAGTACC 59.798 52.174 0.00 0.00 41.07 3.34
5523 9121 4.500499 TGTACTAGACTGGAGGGAGTAC 57.500 50.000 0.00 0.00 41.77 2.73
5524 9122 5.014966 ACTTTGTACTAGACTGGAGGGAGTA 59.985 44.000 0.00 0.00 0.00 2.59
5525 9123 4.202695 ACTTTGTACTAGACTGGAGGGAGT 60.203 45.833 0.00 0.00 0.00 3.85
5526 9124 4.345854 ACTTTGTACTAGACTGGAGGGAG 58.654 47.826 0.00 0.00 0.00 4.30
5527 9125 4.399483 ACTTTGTACTAGACTGGAGGGA 57.601 45.455 0.00 0.00 0.00 4.20
5528 9126 5.715753 ACTAACTTTGTACTAGACTGGAGGG 59.284 44.000 0.00 0.00 0.00 4.30
5529 9127 6.837471 ACTAACTTTGTACTAGACTGGAGG 57.163 41.667 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.