Multiple sequence alignment - TraesCS2D01G161300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G161300 chr2D 100.000 5663 0 0 972 6634 106259152 106264814 0.000000e+00 10458.0
1 TraesCS2D01G161300 chr2D 100.000 511 0 0 1 511 106258181 106258691 0.000000e+00 944.0
2 TraesCS2D01G161300 chr2D 96.078 255 10 0 1 255 106233453 106233707 3.700000e-112 416.0
3 TraesCS2D01G161300 chr2D 95.703 256 11 0 1 256 106241845 106242100 4.790000e-111 412.0
4 TraesCS2D01G161300 chr2D 94.479 163 6 1 3989 4148 134301488 134301650 1.430000e-61 248.0
5 TraesCS2D01G161300 chr2A 93.408 3459 121 44 972 4415 102672890 102676256 0.000000e+00 5025.0
6 TraesCS2D01G161300 chr2A 96.172 2090 40 15 4520 6580 102676255 102678333 0.000000e+00 3380.0
7 TraesCS2D01G161300 chr2A 92.816 515 24 8 1 511 102672294 102672799 0.000000e+00 734.0
8 TraesCS2D01G161300 chr2A 94.595 111 4 2 4414 4522 646728376 646728266 3.180000e-38 171.0
9 TraesCS2D01G161300 chr2A 95.192 104 5 0 4413 4516 650256592 650256695 1.480000e-36 165.0
10 TraesCS2D01G161300 chr2A 88.148 135 10 5 4385 4516 256792631 256792762 8.910000e-34 156.0
11 TraesCS2D01G161300 chr2B 93.539 3111 98 29 972 4062 154900580 154903607 0.000000e+00 4536.0
12 TraesCS2D01G161300 chr2B 97.195 927 18 3 4520 5446 154904084 154905002 0.000000e+00 1561.0
13 TraesCS2D01G161300 chr2B 98.186 441 7 1 5437 5876 154905418 154905858 0.000000e+00 769.0
14 TraesCS2D01G161300 chr2B 94.972 358 12 4 4061 4415 154903731 154904085 2.090000e-154 556.0
15 TraesCS2D01G161300 chr2B 88.400 250 8 6 269 511 154900254 154900489 1.410000e-71 281.0
16 TraesCS2D01G161300 chr2B 95.679 162 4 1 3989 4147 608226725 608226886 2.370000e-64 257.0
17 TraesCS2D01G161300 chr2B 95.283 106 5 0 4411 4516 672018322 672018427 1.140000e-37 169.0
18 TraesCS2D01G161300 chr7D 91.571 261 22 0 1 261 568321791 568322051 1.760000e-95 361.0
19 TraesCS2D01G161300 chr7A 90.234 256 25 0 1 256 656984397 656984142 1.070000e-87 335.0
20 TraesCS2D01G161300 chr4A 93.103 174 8 2 3989 4158 137966979 137967152 1.100000e-62 252.0
21 TraesCS2D01G161300 chr4A 93.103 174 8 2 3989 4158 137972830 137972657 1.100000e-62 252.0
22 TraesCS2D01G161300 chr4A 91.275 149 12 1 113 261 550171319 550171172 1.130000e-47 202.0
23 TraesCS2D01G161300 chr4A 93.277 119 6 2 4411 4528 274959065 274958948 2.460000e-39 174.0
24 TraesCS2D01G161300 chr4A 94.643 112 6 0 4414 4525 605663361 605663472 2.460000e-39 174.0
25 TraesCS2D01G161300 chr7B 93.023 172 8 2 3983 4150 490207983 490208154 1.430000e-61 248.0
26 TraesCS2D01G161300 chr7B 86.364 154 15 4 6 158 558984433 558984285 5.320000e-36 163.0
27 TraesCS2D01G161300 chr7B 92.537 67 3 2 6337 6401 196390827 196390893 1.970000e-15 95.3
28 TraesCS2D01G161300 chr6B 93.413 167 8 1 3985 4148 226361514 226361680 1.850000e-60 244.0
29 TraesCS2D01G161300 chr6B 82.677 254 32 9 1 252 524049767 524050010 1.450000e-51 215.0
30 TraesCS2D01G161300 chr5A 92.486 173 9 2 3985 4154 320214408 320214237 1.850000e-60 244.0
31 TraesCS2D01G161300 chr5A 91.667 144 11 1 113 256 535185177 535185035 1.460000e-46 198.0
32 TraesCS2D01G161300 chr5A 85.897 78 11 0 1155 1232 653032672 653032749 4.260000e-12 84.2
33 TraesCS2D01G161300 chr5B 93.966 116 6 1 4411 4525 622393441 622393556 2.460000e-39 174.0
34 TraesCS2D01G161300 chr1D 94.643 112 6 0 4413 4524 459859038 459859149 2.460000e-39 174.0
35 TraesCS2D01G161300 chr1D 95.312 64 1 2 6337 6398 107175520 107175583 4.230000e-17 100.0
36 TraesCS2D01G161300 chr5D 96.117 103 4 0 4414 4516 70640484 70640586 1.140000e-37 169.0
37 TraesCS2D01G161300 chr5D 85.621 153 18 2 6 158 4485321 4485173 2.480000e-34 158.0
38 TraesCS2D01G161300 chr5D 85.621 153 18 2 6 158 4720527 4720379 2.480000e-34 158.0
39 TraesCS2D01G161300 chr1A 95.238 63 2 1 6337 6398 109577145 109577207 1.520000e-16 99.0
40 TraesCS2D01G161300 chrUn 92.754 69 1 1 6333 6397 49143752 49143820 5.480000e-16 97.1
41 TraesCS2D01G161300 chr6D 93.846 65 3 1 6334 6398 431266184 431266121 5.480000e-16 97.1
42 TraesCS2D01G161300 chr6D 92.188 64 4 1 6334 6397 439768329 439768391 9.160000e-14 89.8
43 TraesCS2D01G161300 chr4D 98.182 55 1 0 6325 6379 333063261 333063315 5.480000e-16 97.1
44 TraesCS2D01G161300 chr6A 92.308 65 4 1 6334 6398 578036035 578035972 2.550000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G161300 chr2D 106258181 106264814 6633 False 5701.000000 10458 100.0000 1 6634 2 chr2D.!!$F4 6633
1 TraesCS2D01G161300 chr2A 102672294 102678333 6039 False 3046.333333 5025 94.1320 1 6580 3 chr2A.!!$F3 6579
2 TraesCS2D01G161300 chr2B 154900254 154905858 5604 False 1540.600000 4536 94.4584 269 5876 5 chr2B.!!$F3 5607

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
260 262 0.298707 CGTGATGATACGTGCAGTGC 59.701 55.000 8.58 8.58 39.13 4.40 F
1419 1465 0.035739 GTTCCGCCTCTTGGTTGGTA 59.964 55.000 0.00 0.00 34.17 3.25 F
1434 1480 0.107081 TGGTAATAATGGGGGCGTCG 59.893 55.000 0.00 0.00 0.00 5.12 F
1459 1505 0.324645 GGGCTGGATTTGGGTCATGT 60.325 55.000 0.00 0.00 0.00 3.21 F
1746 1793 0.958822 GGTTTCCACTGCGAATTGGT 59.041 50.000 0.00 0.00 34.19 3.67 F
1750 1797 1.603455 CCACTGCGAATTGGTGGGT 60.603 57.895 0.00 0.00 44.63 4.51 F
2521 2575 1.972872 AGTTCTGGTGCACCTTTCAG 58.027 50.000 34.75 23.81 36.82 3.02 F
3930 3990 0.618968 CCCTCTCCCCACTTACTGCT 60.619 60.000 0.00 0.00 0.00 4.24 F
4529 4721 2.104170 ACAGAGGAGGTAGTAAGCTGC 58.896 52.381 0.00 0.00 41.45 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1726 1773 0.109781 CCAATTCGCAGTGGAAACCG 60.110 55.000 0.00 0.0 40.98 4.44 R
2682 2736 0.850100 TTCCAGTTTTCCCCTGCAGA 59.150 50.000 17.39 0.0 0.00 4.26 R
3063 3117 4.160439 TCATAGTTCCACCTTGCTCACTAG 59.840 45.833 0.00 0.0 0.00 2.57 R
3127 3181 6.542370 GCCTCTAGCTAATTTGACATACCAAA 59.458 38.462 0.00 0.0 38.22 3.28 R
3494 3554 2.295909 GCTGGCAACTGTGTCCAAAATA 59.704 45.455 0.00 0.0 37.92 1.40 R
3930 3990 3.124466 CGATGTCCAATGCGAAGTTAACA 59.876 43.478 8.61 0.0 0.00 2.41 R
4514 4706 1.196012 ACCAGCAGCTTACTACCTCC 58.804 55.000 0.00 0.0 0.00 4.30 R
5113 5308 1.043816 AGGAGCCATGTACCGATCTG 58.956 55.000 0.00 0.0 0.00 2.90 R
6157 6782 2.514458 ATAAAACTGCACCCCCTCAG 57.486 50.000 0.00 0.0 36.45 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 6.324561 AGAAGTCTTTCAAGCCAGATTTTC 57.675 37.500 0.00 0.00 35.70 2.29
80 82 0.466739 GCATCCCTGTCCATGCATGA 60.467 55.000 28.31 11.26 44.18 3.07
174 176 9.970395 TTCTGATCATCATTATATTTTGTTGGC 57.030 29.630 0.00 0.00 0.00 4.52
242 244 2.927429 TGAATGCGGATTGTTTTCACG 58.073 42.857 6.97 0.00 0.00 4.35
260 262 0.298707 CGTGATGATACGTGCAGTGC 59.701 55.000 8.58 8.58 39.13 4.40
261 263 0.298707 GTGATGATACGTGCAGTGCG 59.701 55.000 11.20 0.00 0.00 5.34
263 265 0.999406 GATGATACGTGCAGTGCGTT 59.001 50.000 11.20 0.00 42.85 4.84
264 266 0.721154 ATGATACGTGCAGTGCGTTG 59.279 50.000 11.20 5.04 42.85 4.10
265 267 1.225745 GATACGTGCAGTGCGTTGC 60.226 57.895 11.20 5.38 42.85 4.17
266 268 1.626654 GATACGTGCAGTGCGTTGCT 61.627 55.000 11.20 0.00 44.38 3.91
267 269 0.389296 ATACGTGCAGTGCGTTGCTA 60.389 50.000 11.20 0.00 44.38 3.49
270 272 1.961277 GTGCAGTGCGTTGCTAGGT 60.961 57.895 11.20 0.00 44.38 3.08
280 282 1.393539 CGTTGCTAGGTCAAATCGGTG 59.606 52.381 0.00 0.00 0.00 4.94
433 437 5.107220 GGTCAAGCAATTGCAGAAAGAATTG 60.107 40.000 30.89 21.95 45.16 2.32
1372 1384 1.682684 ACGGTGAGGCGATCCTTCT 60.683 57.895 0.00 0.00 44.46 2.85
1418 1464 1.228154 GTTCCGCCTCTTGGTTGGT 60.228 57.895 0.00 0.00 34.17 3.67
1419 1465 0.035739 GTTCCGCCTCTTGGTTGGTA 59.964 55.000 0.00 0.00 34.17 3.25
1420 1466 0.766131 TTCCGCCTCTTGGTTGGTAA 59.234 50.000 0.00 0.00 34.17 2.85
1421 1467 0.988832 TCCGCCTCTTGGTTGGTAAT 59.011 50.000 0.00 0.00 34.17 1.89
1422 1468 2.189676 TCCGCCTCTTGGTTGGTAATA 58.810 47.619 0.00 0.00 34.17 0.98
1423 1469 2.572556 TCCGCCTCTTGGTTGGTAATAA 59.427 45.455 0.00 0.00 34.17 1.40
1424 1470 3.201266 TCCGCCTCTTGGTTGGTAATAAT 59.799 43.478 0.00 0.00 34.17 1.28
1425 1471 3.315191 CCGCCTCTTGGTTGGTAATAATG 59.685 47.826 0.00 0.00 35.27 1.90
1426 1472 3.315191 CGCCTCTTGGTTGGTAATAATGG 59.685 47.826 0.00 0.00 35.27 3.16
1427 1473 3.636764 GCCTCTTGGTTGGTAATAATGGG 59.363 47.826 0.00 0.00 35.27 4.00
1428 1474 4.215109 CCTCTTGGTTGGTAATAATGGGG 58.785 47.826 0.00 0.00 0.00 4.96
1429 1475 4.215109 CTCTTGGTTGGTAATAATGGGGG 58.785 47.826 0.00 0.00 0.00 5.40
1430 1476 2.463047 TGGTTGGTAATAATGGGGGC 57.537 50.000 0.00 0.00 0.00 5.80
1431 1477 1.324383 GGTTGGTAATAATGGGGGCG 58.676 55.000 0.00 0.00 0.00 6.13
1432 1478 1.410507 GGTTGGTAATAATGGGGGCGT 60.411 52.381 0.00 0.00 0.00 5.68
1433 1479 1.951602 GTTGGTAATAATGGGGGCGTC 59.048 52.381 0.00 0.00 0.00 5.19
1434 1480 0.107081 TGGTAATAATGGGGGCGTCG 59.893 55.000 0.00 0.00 0.00 5.12
1435 1481 0.604511 GGTAATAATGGGGGCGTCGG 60.605 60.000 0.00 0.00 0.00 4.79
1436 1482 1.071814 TAATAATGGGGGCGTCGGC 59.928 57.895 10.88 10.88 38.90 5.54
1437 1483 2.718747 TAATAATGGGGGCGTCGGCG 62.719 60.000 4.29 4.29 41.24 6.46
1450 1496 3.061848 CGGCGTTGGGCTGGATTT 61.062 61.111 0.00 0.00 44.68 2.17
1459 1505 0.324645 GGGCTGGATTTGGGTCATGT 60.325 55.000 0.00 0.00 0.00 3.21
1463 1509 2.173519 CTGGATTTGGGTCATGTTGCT 58.826 47.619 0.00 0.00 0.00 3.91
1464 1510 2.165030 CTGGATTTGGGTCATGTTGCTC 59.835 50.000 0.00 0.00 0.00 4.26
1465 1511 2.170166 GGATTTGGGTCATGTTGCTCA 58.830 47.619 0.00 0.00 0.00 4.26
1468 1514 2.885135 TTGGGTCATGTTGCTCATCT 57.115 45.000 0.00 0.00 34.09 2.90
1478 1524 2.305635 TGTTGCTCATCTGGGCTTCTTA 59.694 45.455 3.35 0.00 0.00 2.10
1513 1559 1.006688 ATTCGGGTTTGCCGTTTGC 60.007 52.632 0.00 0.00 41.77 3.68
1531 1577 2.703190 GCGTTGAGCTCATTTAGTCG 57.297 50.000 19.04 15.33 44.04 4.18
1532 1578 1.993370 GCGTTGAGCTCATTTAGTCGT 59.007 47.619 19.04 0.00 44.04 4.34
1533 1579 2.412089 GCGTTGAGCTCATTTAGTCGTT 59.588 45.455 19.04 0.00 44.04 3.85
1534 1580 3.120649 GCGTTGAGCTCATTTAGTCGTTT 60.121 43.478 19.04 0.00 44.04 3.60
1640 1686 3.671702 GCATTAGCCTCTTGTTTGCACTC 60.672 47.826 0.00 0.00 33.58 3.51
1689 1736 2.669569 CACCGTCTGCCTTGGGTG 60.670 66.667 0.00 0.00 43.41 4.61
1695 1742 2.993264 CTGCCTTGGGTGCTTGGG 60.993 66.667 0.00 0.00 0.00 4.12
1701 1748 2.655077 CTTGGGTGCTTGGGTGGGAA 62.655 60.000 0.00 0.00 0.00 3.97
1726 1773 1.130561 GGCTGTGCTCCACGAAATTAC 59.869 52.381 0.00 0.00 37.14 1.89
1728 1775 1.393539 CTGTGCTCCACGAAATTACGG 59.606 52.381 0.00 0.00 37.14 4.02
1731 1778 2.224784 GTGCTCCACGAAATTACGGTTT 59.775 45.455 0.00 0.00 37.61 3.27
1746 1793 0.958822 GGTTTCCACTGCGAATTGGT 59.041 50.000 0.00 0.00 34.19 3.67
1750 1797 1.603455 CCACTGCGAATTGGTGGGT 60.603 57.895 0.00 0.00 44.63 4.51
1762 1809 5.368989 GAATTGGTGGGTCTTGTCCTATAG 58.631 45.833 0.00 0.00 0.00 1.31
1763 1810 3.769189 TGGTGGGTCTTGTCCTATAGA 57.231 47.619 0.00 0.00 0.00 1.98
1764 1811 4.280789 TGGTGGGTCTTGTCCTATAGAT 57.719 45.455 0.00 0.00 0.00 1.98
1765 1812 3.967326 TGGTGGGTCTTGTCCTATAGATG 59.033 47.826 0.00 0.00 0.00 2.90
1817 1868 5.237048 GTGTTGAATGCATATTTGTTGGGT 58.763 37.500 0.00 0.00 0.00 4.51
1818 1869 6.393990 GTGTTGAATGCATATTTGTTGGGTA 58.606 36.000 0.00 0.00 0.00 3.69
1819 1870 6.531240 GTGTTGAATGCATATTTGTTGGGTAG 59.469 38.462 0.00 0.00 0.00 3.18
1820 1871 6.435591 TGTTGAATGCATATTTGTTGGGTAGA 59.564 34.615 0.00 0.00 0.00 2.59
1821 1872 6.449635 TGAATGCATATTTGTTGGGTAGAC 57.550 37.500 0.00 0.00 0.00 2.59
1822 1873 6.186957 TGAATGCATATTTGTTGGGTAGACT 58.813 36.000 0.00 0.00 0.00 3.24
1823 1874 6.663093 TGAATGCATATTTGTTGGGTAGACTT 59.337 34.615 0.00 0.00 0.00 3.01
1824 1875 7.831690 TGAATGCATATTTGTTGGGTAGACTTA 59.168 33.333 0.00 0.00 0.00 2.24
1834 1885 3.709587 TGGGTAGACTTAGGAGGTTCTG 58.290 50.000 0.00 0.00 0.00 3.02
2219 2273 4.020218 GTGAGTGCCCCATATATTGCTCTA 60.020 45.833 4.21 0.00 0.00 2.43
2235 2289 3.393800 GCTCTACAGCTGTCTTTGTCAA 58.606 45.455 25.56 1.44 43.09 3.18
2283 2337 4.401202 CCTGGTCCCAAATATTGTTACCAC 59.599 45.833 8.76 0.00 38.12 4.16
2448 2502 8.956446 TGTTGATTAGGAGATCATAGTGGATA 57.044 34.615 0.00 0.00 36.05 2.59
2480 2534 6.365520 AGGATGTGTTTCAGAGGTTTACTTT 58.634 36.000 0.00 0.00 0.00 2.66
2491 2545 9.621629 TTCAGAGGTTTACTTTGTCTATTTTCA 57.378 29.630 0.00 0.00 33.27 2.69
2521 2575 1.972872 AGTTCTGGTGCACCTTTCAG 58.027 50.000 34.75 23.81 36.82 3.02
2566 2620 9.461312 TGCTCTACATAGTTGGAATAAATGTTT 57.539 29.630 0.00 0.00 33.15 2.83
2598 2652 7.095187 GGGTAAGAGCTGTTTAATAATCATCGG 60.095 40.741 0.00 0.00 0.00 4.18
2609 2663 9.612620 GTTTAATAATCATCGGGACATCATTTC 57.387 33.333 0.00 0.00 0.00 2.17
2842 2896 7.498900 TCGAATTATCTCTTGGTTATGTGCAAT 59.501 33.333 0.00 0.00 0.00 3.56
2905 2959 4.946157 AGCAGTCTTAGTTAAGCATTGCAT 59.054 37.500 11.91 0.71 36.74 3.96
2906 2960 5.032863 GCAGTCTTAGTTAAGCATTGCATG 58.967 41.667 11.91 0.00 35.59 4.06
2937 2991 2.032178 GGCAAACTGAGACTGTTGTGAC 59.968 50.000 0.00 0.00 0.00 3.67
2983 3037 7.970102 AGTTGTTAGTTAACTAATGGACCTCA 58.030 34.615 26.49 16.64 40.20 3.86
3016 3070 5.263599 TGATTACAAAATGTCCATGGCTCT 58.736 37.500 6.96 0.00 0.00 4.09
3090 3144 2.012051 GCAAGGTGGAACTATGACCCG 61.012 57.143 0.00 0.00 36.74 5.28
3094 3148 3.175594 AGGTGGAACTATGACCCGTAAA 58.824 45.455 0.00 0.00 36.74 2.01
3323 3378 8.172484 GTCTACATTTGCATAATAAACGTGTGA 58.828 33.333 0.00 0.00 0.00 3.58
3494 3554 4.474651 TCACATAATCACCAAGACTCCCAT 59.525 41.667 0.00 0.00 0.00 4.00
3930 3990 0.618968 CCCTCTCCCCACTTACTGCT 60.619 60.000 0.00 0.00 0.00 4.24
3972 4032 6.480320 ACATCGCAAGGTATTCTCATCTTTAC 59.520 38.462 0.00 0.00 38.47 2.01
4222 4414 9.231297 TGTATCCTTCTCTTGGAAAATTAACTG 57.769 33.333 0.00 0.00 37.13 3.16
4339 4531 2.294979 TCTCTTATGCGCCTCTCGTTA 58.705 47.619 4.18 0.00 41.07 3.18
4415 4607 9.941664 CAAATTCATCCAAGTGATCAGTAATAC 57.058 33.333 2.79 0.00 0.00 1.89
4416 4608 9.911788 AAATTCATCCAAGTGATCAGTAATACT 57.088 29.630 2.79 0.00 0.00 2.12
4417 4609 9.553064 AATTCATCCAAGTGATCAGTAATACTC 57.447 33.333 2.79 0.00 0.00 2.59
4418 4610 7.055667 TCATCCAAGTGATCAGTAATACTCC 57.944 40.000 2.79 0.00 0.00 3.85
4419 4611 5.871396 TCCAAGTGATCAGTAATACTCCC 57.129 43.478 2.79 0.00 0.00 4.30
4420 4612 5.529289 TCCAAGTGATCAGTAATACTCCCT 58.471 41.667 2.79 0.00 0.00 4.20
4421 4613 5.598830 TCCAAGTGATCAGTAATACTCCCTC 59.401 44.000 2.79 0.00 0.00 4.30
4422 4614 5.221541 CCAAGTGATCAGTAATACTCCCTCC 60.222 48.000 2.79 0.00 0.00 4.30
4423 4615 5.144159 AGTGATCAGTAATACTCCCTCCA 57.856 43.478 0.00 0.00 0.00 3.86
4424 4616 5.721225 AGTGATCAGTAATACTCCCTCCAT 58.279 41.667 0.00 0.00 0.00 3.41
4425 4617 6.146760 AGTGATCAGTAATACTCCCTCCATT 58.853 40.000 0.00 0.00 0.00 3.16
4426 4618 6.268847 AGTGATCAGTAATACTCCCTCCATTC 59.731 42.308 0.00 0.00 0.00 2.67
4427 4619 6.042093 GTGATCAGTAATACTCCCTCCATTCA 59.958 42.308 0.00 0.00 0.00 2.57
4428 4620 5.871396 TCAGTAATACTCCCTCCATTCAC 57.129 43.478 0.00 0.00 0.00 3.18
4429 4621 5.529289 TCAGTAATACTCCCTCCATTCACT 58.471 41.667 0.00 0.00 0.00 3.41
4430 4622 5.964477 TCAGTAATACTCCCTCCATTCACTT 59.036 40.000 0.00 0.00 0.00 3.16
4431 4623 6.443849 TCAGTAATACTCCCTCCATTCACTTT 59.556 38.462 0.00 0.00 0.00 2.66
4432 4624 7.037586 TCAGTAATACTCCCTCCATTCACTTTT 60.038 37.037 0.00 0.00 0.00 2.27
4433 4625 7.066284 CAGTAATACTCCCTCCATTCACTTTTG 59.934 40.741 0.00 0.00 0.00 2.44
4434 4626 3.884037 ACTCCCTCCATTCACTTTTGT 57.116 42.857 0.00 0.00 0.00 2.83
4435 4627 4.993705 ACTCCCTCCATTCACTTTTGTA 57.006 40.909 0.00 0.00 0.00 2.41
4436 4628 5.319043 ACTCCCTCCATTCACTTTTGTAA 57.681 39.130 0.00 0.00 0.00 2.41
4437 4629 5.892348 ACTCCCTCCATTCACTTTTGTAAT 58.108 37.500 0.00 0.00 0.00 1.89
4438 4630 6.314917 ACTCCCTCCATTCACTTTTGTAATT 58.685 36.000 0.00 0.00 0.00 1.40
4439 4631 6.434340 ACTCCCTCCATTCACTTTTGTAATTC 59.566 38.462 0.00 0.00 0.00 2.17
4440 4632 5.414454 TCCCTCCATTCACTTTTGTAATTCG 59.586 40.000 0.00 0.00 0.00 3.34
4441 4633 5.183140 CCCTCCATTCACTTTTGTAATTCGT 59.817 40.000 0.00 0.00 0.00 3.85
4442 4634 6.294508 CCCTCCATTCACTTTTGTAATTCGTT 60.295 38.462 0.00 0.00 0.00 3.85
4443 4635 7.145323 CCTCCATTCACTTTTGTAATTCGTTT 58.855 34.615 0.00 0.00 0.00 3.60
4444 4636 7.326063 CCTCCATTCACTTTTGTAATTCGTTTC 59.674 37.037 0.00 0.00 0.00 2.78
4445 4637 7.708051 TCCATTCACTTTTGTAATTCGTTTCA 58.292 30.769 0.00 0.00 0.00 2.69
4446 4638 7.860373 TCCATTCACTTTTGTAATTCGTTTCAG 59.140 33.333 0.00 0.00 0.00 3.02
4447 4639 7.860373 CCATTCACTTTTGTAATTCGTTTCAGA 59.140 33.333 0.00 0.00 0.00 3.27
4448 4640 8.682016 CATTCACTTTTGTAATTCGTTTCAGAC 58.318 33.333 0.00 0.00 0.00 3.51
4449 4641 7.310072 TCACTTTTGTAATTCGTTTCAGACA 57.690 32.000 0.00 0.00 0.00 3.41
4450 4642 7.753659 TCACTTTTGTAATTCGTTTCAGACAA 58.246 30.769 0.00 0.00 0.00 3.18
4451 4643 7.694784 TCACTTTTGTAATTCGTTTCAGACAAC 59.305 33.333 0.00 0.00 0.00 3.32
4452 4644 7.696453 CACTTTTGTAATTCGTTTCAGACAACT 59.304 33.333 0.00 0.00 0.00 3.16
4453 4645 7.908601 ACTTTTGTAATTCGTTTCAGACAACTC 59.091 33.333 0.00 0.00 0.00 3.01
4454 4646 6.912203 TTGTAATTCGTTTCAGACAACTCA 57.088 33.333 0.00 0.00 0.00 3.41
4455 4647 6.912203 TGTAATTCGTTTCAGACAACTCAA 57.088 33.333 0.00 0.00 0.00 3.02
4456 4648 7.310072 TGTAATTCGTTTCAGACAACTCAAA 57.690 32.000 0.00 0.00 0.00 2.69
4457 4649 7.753659 TGTAATTCGTTTCAGACAACTCAAAA 58.246 30.769 0.00 0.00 0.00 2.44
4458 4650 8.402472 TGTAATTCGTTTCAGACAACTCAAAAT 58.598 29.630 0.00 0.00 0.00 1.82
4459 4651 9.872757 GTAATTCGTTTCAGACAACTCAAAATA 57.127 29.630 0.00 0.00 0.00 1.40
4461 4653 6.539649 TCGTTTCAGACAACTCAAAATAGG 57.460 37.500 0.00 0.00 0.00 2.57
4462 4654 5.049680 TCGTTTCAGACAACTCAAAATAGGC 60.050 40.000 0.00 0.00 0.00 3.93
4463 4655 5.049405 CGTTTCAGACAACTCAAAATAGGCT 60.049 40.000 0.00 0.00 0.00 4.58
4464 4656 5.947228 TTCAGACAACTCAAAATAGGCTG 57.053 39.130 0.00 0.00 0.00 4.85
4465 4657 4.973168 TCAGACAACTCAAAATAGGCTGT 58.027 39.130 0.00 0.00 0.00 4.40
4466 4658 5.376625 TCAGACAACTCAAAATAGGCTGTT 58.623 37.500 0.00 0.00 0.00 3.16
4467 4659 5.827797 TCAGACAACTCAAAATAGGCTGTTT 59.172 36.000 3.12 3.12 0.00 2.83
4468 4660 6.321181 TCAGACAACTCAAAATAGGCTGTTTT 59.679 34.615 15.20 15.20 0.00 2.43
4469 4661 6.418819 CAGACAACTCAAAATAGGCTGTTTTG 59.581 38.462 31.63 31.63 44.10 2.44
4470 4662 6.096846 AGACAACTCAAAATAGGCTGTTTTGT 59.903 34.615 33.82 22.91 43.52 2.83
4471 4663 7.284489 AGACAACTCAAAATAGGCTGTTTTGTA 59.716 33.333 33.82 24.09 43.52 2.41
4472 4664 7.200455 ACAACTCAAAATAGGCTGTTTTGTAC 58.800 34.615 33.82 0.00 43.52 2.90
4473 4665 6.952773 ACTCAAAATAGGCTGTTTTGTACA 57.047 33.333 33.82 21.60 43.52 2.90
4474 4666 7.524717 ACTCAAAATAGGCTGTTTTGTACAT 57.475 32.000 33.82 21.40 43.52 2.29
4475 4667 7.951591 ACTCAAAATAGGCTGTTTTGTACATT 58.048 30.769 33.82 19.41 43.52 2.71
4476 4668 7.867403 ACTCAAAATAGGCTGTTTTGTACATTG 59.133 33.333 33.82 23.36 43.52 2.82
4477 4669 7.721402 TCAAAATAGGCTGTTTTGTACATTGT 58.279 30.769 33.82 7.45 43.52 2.71
4478 4670 7.865385 TCAAAATAGGCTGTTTTGTACATTGTC 59.135 33.333 33.82 0.00 43.52 3.18
4479 4671 7.524717 AAATAGGCTGTTTTGTACATTGTCT 57.475 32.000 3.12 0.00 35.85 3.41
4480 4672 4.836125 AGGCTGTTTTGTACATTGTCTG 57.164 40.909 0.00 0.00 35.85 3.51
4481 4673 4.460263 AGGCTGTTTTGTACATTGTCTGA 58.540 39.130 0.00 0.00 35.85 3.27
4482 4674 4.887071 AGGCTGTTTTGTACATTGTCTGAA 59.113 37.500 0.00 0.00 35.85 3.02
4483 4675 5.359576 AGGCTGTTTTGTACATTGTCTGAAA 59.640 36.000 0.00 0.00 35.85 2.69
4484 4676 6.040842 AGGCTGTTTTGTACATTGTCTGAAAT 59.959 34.615 0.00 0.00 35.85 2.17
4485 4677 6.144402 GGCTGTTTTGTACATTGTCTGAAATG 59.856 38.462 0.00 9.50 42.21 2.32
4487 4679 7.096477 GCTGTTTTGTACATTGTCTGAAATGTC 60.096 37.037 16.13 11.24 45.47 3.06
4488 4680 7.995289 TGTTTTGTACATTGTCTGAAATGTCT 58.005 30.769 16.13 3.09 45.47 3.41
4489 4681 8.465999 TGTTTTGTACATTGTCTGAAATGTCTT 58.534 29.630 16.13 2.61 45.47 3.01
4490 4682 8.958043 GTTTTGTACATTGTCTGAAATGTCTTC 58.042 33.333 16.13 11.26 45.47 2.87
4491 4683 7.800155 TTGTACATTGTCTGAAATGTCTTCA 57.200 32.000 16.13 12.76 45.47 3.02
4492 4684 7.800155 TGTACATTGTCTGAAATGTCTTCAA 57.200 32.000 16.13 0.18 45.47 2.69
4493 4685 7.864686 TGTACATTGTCTGAAATGTCTTCAAG 58.135 34.615 16.13 0.00 45.47 3.02
4494 4686 6.323203 ACATTGTCTGAAATGTCTTCAAGG 57.677 37.500 10.41 0.00 45.47 3.61
4495 4687 4.836125 TTGTCTGAAATGTCTTCAAGGC 57.164 40.909 0.00 0.00 0.00 4.35
4496 4688 3.149196 TGTCTGAAATGTCTTCAAGGCC 58.851 45.455 0.00 0.00 0.00 5.19
4497 4689 3.181440 TGTCTGAAATGTCTTCAAGGCCT 60.181 43.478 0.00 0.00 0.00 5.19
4498 4690 3.823304 GTCTGAAATGTCTTCAAGGCCTT 59.177 43.478 13.78 13.78 0.00 4.35
4499 4691 5.003804 GTCTGAAATGTCTTCAAGGCCTTA 58.996 41.667 20.00 2.00 0.00 2.69
4500 4692 5.649831 GTCTGAAATGTCTTCAAGGCCTTAT 59.350 40.000 20.00 3.68 0.00 1.73
4501 4693 6.823689 GTCTGAAATGTCTTCAAGGCCTTATA 59.176 38.462 20.00 6.65 0.00 0.98
4502 4694 7.336931 GTCTGAAATGTCTTCAAGGCCTTATAA 59.663 37.037 20.00 14.54 0.00 0.98
4503 4695 7.888021 TCTGAAATGTCTTCAAGGCCTTATAAA 59.112 33.333 20.00 11.96 0.00 1.40
4504 4696 8.415950 TGAAATGTCTTCAAGGCCTTATAAAA 57.584 30.769 20.00 9.43 0.00 1.52
4505 4697 8.522830 TGAAATGTCTTCAAGGCCTTATAAAAG 58.477 33.333 20.00 18.05 0.00 2.27
4506 4698 8.422577 AAATGTCTTCAAGGCCTTATAAAAGT 57.577 30.769 20.00 0.00 0.00 2.66
4507 4699 6.817765 TGTCTTCAAGGCCTTATAAAAGTG 57.182 37.500 20.00 3.72 0.00 3.16
4508 4700 6.539173 TGTCTTCAAGGCCTTATAAAAGTGA 58.461 36.000 20.00 6.54 0.00 3.41
4509 4701 7.001674 TGTCTTCAAGGCCTTATAAAAGTGAA 58.998 34.615 20.00 14.48 0.00 3.18
4510 4702 7.040686 TGTCTTCAAGGCCTTATAAAAGTGAAC 60.041 37.037 20.00 13.04 0.00 3.18
4511 4703 7.001674 TCTTCAAGGCCTTATAAAAGTGAACA 58.998 34.615 20.00 0.21 0.00 3.18
4512 4704 6.817765 TCAAGGCCTTATAAAAGTGAACAG 57.182 37.500 20.00 0.00 0.00 3.16
4513 4705 6.539173 TCAAGGCCTTATAAAAGTGAACAGA 58.461 36.000 20.00 2.74 0.00 3.41
4514 4706 6.655003 TCAAGGCCTTATAAAAGTGAACAGAG 59.345 38.462 20.00 0.00 0.00 3.35
4515 4707 5.501156 AGGCCTTATAAAAGTGAACAGAGG 58.499 41.667 0.00 0.00 0.00 3.69
4516 4708 5.250774 AGGCCTTATAAAAGTGAACAGAGGA 59.749 40.000 0.00 0.00 0.00 3.71
4517 4709 5.586643 GGCCTTATAAAAGTGAACAGAGGAG 59.413 44.000 0.00 0.00 0.00 3.69
4518 4710 5.586643 GCCTTATAAAAGTGAACAGAGGAGG 59.413 44.000 0.00 0.00 0.00 4.30
4519 4711 6.712276 CCTTATAAAAGTGAACAGAGGAGGT 58.288 40.000 0.00 0.00 0.00 3.85
4520 4712 7.580882 GCCTTATAAAAGTGAACAGAGGAGGTA 60.581 40.741 0.00 0.00 0.00 3.08
4525 4717 5.986501 AAGTGAACAGAGGAGGTAGTAAG 57.013 43.478 0.00 0.00 0.00 2.34
4529 4721 2.104170 ACAGAGGAGGTAGTAAGCTGC 58.896 52.381 0.00 0.00 41.45 5.25
4572 4764 8.940952 GGCATGGTCTCTTTATATCTATTTGAC 58.059 37.037 0.00 0.00 0.00 3.18
4590 4782 3.505386 TGACCTGCAATGTGGGTTTATT 58.495 40.909 0.00 0.00 33.01 1.40
4636 4830 8.109634 ACCATCACACAGTATCCTTTCTTATTT 58.890 33.333 0.00 0.00 0.00 1.40
4685 4879 5.749462 ACTTTGCATGATAGGTTCTAGCTT 58.251 37.500 0.00 0.00 0.00 3.74
4720 4914 4.462508 TCACTTGATCTGGTGATCTGTC 57.537 45.455 14.23 0.00 46.84 3.51
4723 4917 4.869297 CACTTGATCTGGTGATCTGTCTTC 59.131 45.833 11.39 0.00 46.84 2.87
4844 5038 2.834638 AAAGCCAAGGTATGATGCCT 57.165 45.000 0.00 0.00 38.11 4.75
4906 5101 6.849697 TGGTCTAACCTATTATGTCAATCCCT 59.150 38.462 0.00 0.00 39.58 4.20
5889 6510 9.896645 CCCATAGTTCTACAGCATATATCAAAT 57.103 33.333 0.00 0.00 0.00 2.32
5929 6552 9.747898 TTACCATTTATCAGAGGTTTACATTGT 57.252 29.630 0.00 0.00 35.62 2.71
5930 6553 8.650143 ACCATTTATCAGAGGTTTACATTGTT 57.350 30.769 0.00 0.00 0.00 2.83
5996 6619 8.912787 AAATGTACACTCTGTAGAGAAATACG 57.087 34.615 15.40 0.00 44.74 3.06
6196 6824 8.515414 GTTTTATTTGAGTAGTTTCCTCTGCAT 58.485 33.333 0.00 0.00 0.00 3.96
6205 6833 3.499918 AGTTTCCTCTGCATCGTTCTTTG 59.500 43.478 0.00 0.00 0.00 2.77
6244 6890 6.095720 ACGTTGTTTTCTGGATTTTACCTCAA 59.904 34.615 0.00 0.00 0.00 3.02
6301 6947 1.777878 TGTTCTTTTAGGCCTCACCCA 59.222 47.619 9.68 0.00 40.58 4.51
6398 7045 2.077687 TATGGGACGGAGGGAGTAAC 57.922 55.000 0.00 0.00 0.00 2.50
6434 7081 9.230122 TGCATAACTTTTCTATCATCACAAAGA 57.770 29.630 0.00 0.00 0.00 2.52
6468 7115 9.077885 ACTTTCTTTGTAAAGATATGGCTCAAA 57.922 29.630 7.80 0.00 43.92 2.69
6509 7156 6.440436 CATGACAAGATTGTTGTGACATTGA 58.560 36.000 3.62 0.00 42.43 2.57
6586 7233 4.397103 TGAATGGATCATGTCTTCTTGTGC 59.603 41.667 0.00 0.00 31.50 4.57
6587 7234 3.421919 TGGATCATGTCTTCTTGTGCA 57.578 42.857 0.00 0.00 0.00 4.57
6588 7235 3.959293 TGGATCATGTCTTCTTGTGCAT 58.041 40.909 0.00 0.00 0.00 3.96
6589 7236 4.338012 TGGATCATGTCTTCTTGTGCATT 58.662 39.130 0.00 0.00 0.00 3.56
6590 7237 4.157105 TGGATCATGTCTTCTTGTGCATTG 59.843 41.667 0.00 0.00 0.00 2.82
6591 7238 4.157289 GGATCATGTCTTCTTGTGCATTGT 59.843 41.667 0.00 0.00 0.00 2.71
6592 7239 5.336213 GGATCATGTCTTCTTGTGCATTGTT 60.336 40.000 0.00 0.00 0.00 2.83
6593 7240 5.518848 TCATGTCTTCTTGTGCATTGTTT 57.481 34.783 0.00 0.00 0.00 2.83
6594 7241 6.631971 TCATGTCTTCTTGTGCATTGTTTA 57.368 33.333 0.00 0.00 0.00 2.01
6595 7242 7.218228 TCATGTCTTCTTGTGCATTGTTTAT 57.782 32.000 0.00 0.00 0.00 1.40
6596 7243 7.660112 TCATGTCTTCTTGTGCATTGTTTATT 58.340 30.769 0.00 0.00 0.00 1.40
6597 7244 7.595875 TCATGTCTTCTTGTGCATTGTTTATTG 59.404 33.333 0.00 0.00 0.00 1.90
6598 7245 6.215121 TGTCTTCTTGTGCATTGTTTATTGG 58.785 36.000 0.00 0.00 0.00 3.16
6599 7246 5.119125 GTCTTCTTGTGCATTGTTTATTGGC 59.881 40.000 0.00 0.00 0.00 4.52
6600 7247 4.597404 TCTTGTGCATTGTTTATTGGCA 57.403 36.364 0.00 0.00 0.00 4.92
6601 7248 5.149973 TCTTGTGCATTGTTTATTGGCAT 57.850 34.783 0.00 0.00 36.79 4.40
6602 7249 6.278172 TCTTGTGCATTGTTTATTGGCATA 57.722 33.333 0.00 0.00 36.79 3.14
6603 7250 6.695429 TCTTGTGCATTGTTTATTGGCATAA 58.305 32.000 0.00 0.00 36.79 1.90
6604 7251 6.964741 TTGTGCATTGTTTATTGGCATAAG 57.035 33.333 0.00 0.00 36.79 1.73
6605 7252 6.278172 TGTGCATTGTTTATTGGCATAAGA 57.722 33.333 0.00 0.00 36.79 2.10
6606 7253 6.876155 TGTGCATTGTTTATTGGCATAAGAT 58.124 32.000 0.00 0.00 36.79 2.40
6607 7254 8.005192 TGTGCATTGTTTATTGGCATAAGATA 57.995 30.769 0.00 0.00 36.79 1.98
6608 7255 8.136800 TGTGCATTGTTTATTGGCATAAGATAG 58.863 33.333 0.00 0.00 36.79 2.08
6609 7256 7.115378 GTGCATTGTTTATTGGCATAAGATAGC 59.885 37.037 0.00 0.00 36.79 2.97
6628 7275 9.657419 AAGATAGCCAAATTTTGATTTAACCAG 57.343 29.630 10.72 0.00 0.00 4.00
6629 7276 8.815912 AGATAGCCAAATTTTGATTTAACCAGT 58.184 29.630 10.72 0.00 0.00 4.00
6630 7277 8.776376 ATAGCCAAATTTTGATTTAACCAGTG 57.224 30.769 10.72 0.00 0.00 3.66
6631 7278 5.469760 AGCCAAATTTTGATTTAACCAGTGC 59.530 36.000 10.72 1.33 0.00 4.40
6632 7279 5.238214 GCCAAATTTTGATTTAACCAGTGCA 59.762 36.000 10.72 0.00 0.00 4.57
6633 7280 6.566376 GCCAAATTTTGATTTAACCAGTGCAG 60.566 38.462 10.72 0.00 0.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 8.802267 TCCCAGGTTTTATTGTTATCTTGAAAG 58.198 33.333 0.00 0.00 0.00 2.62
67 69 4.005650 AGTACTGTTTCATGCATGGACAG 58.994 43.478 36.09 36.09 42.54 3.51
80 82 6.768861 AGCACTCTATATCTCGAGTACTGTTT 59.231 38.462 13.13 0.00 38.37 2.83
107 109 9.703892 CTAGGGATATTGAGAAATGTAAGACAG 57.296 37.037 0.00 0.00 0.00 3.51
225 227 1.876799 TCACGTGAAAACAATCCGCAT 59.123 42.857 17.62 0.00 0.00 4.73
242 244 0.298707 CGCACTGCACGTATCATCAC 59.701 55.000 1.11 0.00 0.00 3.06
253 255 1.667830 GACCTAGCAACGCACTGCA 60.668 57.895 9.48 0.00 45.18 4.41
254 256 1.227999 TTGACCTAGCAACGCACTGC 61.228 55.000 0.00 0.00 42.97 4.40
255 257 1.225855 TTTGACCTAGCAACGCACTG 58.774 50.000 0.00 0.00 0.00 3.66
257 259 1.201921 CGATTTGACCTAGCAACGCAC 60.202 52.381 0.00 0.00 0.00 5.34
259 261 0.373716 CCGATTTGACCTAGCAACGC 59.626 55.000 0.00 0.00 0.00 4.84
260 262 1.393539 CACCGATTTGACCTAGCAACG 59.606 52.381 0.00 0.00 0.00 4.10
261 263 2.695359 TCACCGATTTGACCTAGCAAC 58.305 47.619 0.00 0.00 0.00 4.17
263 265 3.627395 ATTCACCGATTTGACCTAGCA 57.373 42.857 0.00 0.00 0.00 3.49
264 266 4.156008 ACAAATTCACCGATTTGACCTAGC 59.844 41.667 15.02 0.00 45.47 3.42
265 267 5.391950 CCACAAATTCACCGATTTGACCTAG 60.392 44.000 15.02 0.00 45.47 3.02
266 268 4.457603 CCACAAATTCACCGATTTGACCTA 59.542 41.667 15.02 0.00 45.47 3.08
267 269 3.255642 CCACAAATTCACCGATTTGACCT 59.744 43.478 15.02 0.00 45.47 3.85
270 272 2.625314 TGCCACAAATTCACCGATTTGA 59.375 40.909 15.02 0.00 45.47 2.69
280 282 2.982470 CGAAAAGAGCTGCCACAAATTC 59.018 45.455 0.00 0.00 0.00 2.17
405 409 0.453282 CTGCAATTGCTTGACCGACG 60.453 55.000 29.37 4.81 42.66 5.12
406 410 0.874390 TCTGCAATTGCTTGACCGAC 59.126 50.000 29.37 0.00 42.66 4.79
417 421 4.612264 ACCAGCAATTCTTTCTGCAATT 57.388 36.364 0.00 0.00 41.17 2.32
1418 1464 1.071814 GCCGACGCCCCCATTATTA 59.928 57.895 0.00 0.00 0.00 0.98
1419 1465 2.203294 GCCGACGCCCCCATTATT 60.203 61.111 0.00 0.00 0.00 1.40
1420 1466 4.619227 CGCCGACGCCCCCATTAT 62.619 66.667 0.00 0.00 0.00 1.28
1431 1477 4.778143 ATCCAGCCCAACGCCGAC 62.778 66.667 0.00 0.00 38.78 4.79
1432 1478 3.561120 AAATCCAGCCCAACGCCGA 62.561 57.895 0.00 0.00 38.78 5.54
1433 1479 3.061848 AAATCCAGCCCAACGCCG 61.062 61.111 0.00 0.00 38.78 6.46
1434 1480 2.573340 CAAATCCAGCCCAACGCC 59.427 61.111 0.00 0.00 38.78 5.68
1435 1481 2.573340 CCAAATCCAGCCCAACGC 59.427 61.111 0.00 0.00 37.98 4.84
1436 1482 1.595093 GACCCAAATCCAGCCCAACG 61.595 60.000 0.00 0.00 0.00 4.10
1437 1483 0.541764 TGACCCAAATCCAGCCCAAC 60.542 55.000 0.00 0.00 0.00 3.77
1438 1484 0.413037 ATGACCCAAATCCAGCCCAA 59.587 50.000 0.00 0.00 0.00 4.12
1439 1485 0.324552 CATGACCCAAATCCAGCCCA 60.325 55.000 0.00 0.00 0.00 5.36
1440 1486 0.324645 ACATGACCCAAATCCAGCCC 60.325 55.000 0.00 0.00 0.00 5.19
1441 1487 1.205417 CAACATGACCCAAATCCAGCC 59.795 52.381 0.00 0.00 0.00 4.85
1442 1488 1.404583 GCAACATGACCCAAATCCAGC 60.405 52.381 0.00 0.00 0.00 4.85
1443 1489 2.165030 GAGCAACATGACCCAAATCCAG 59.835 50.000 0.00 0.00 0.00 3.86
1444 1490 2.170166 GAGCAACATGACCCAAATCCA 58.830 47.619 0.00 0.00 0.00 3.41
1445 1491 2.170166 TGAGCAACATGACCCAAATCC 58.830 47.619 0.00 0.00 0.00 3.01
1446 1492 3.698040 AGATGAGCAACATGACCCAAATC 59.302 43.478 0.00 0.00 39.56 2.17
1450 1496 1.340308 CCAGATGAGCAACATGACCCA 60.340 52.381 0.00 0.00 39.56 4.51
1459 1505 2.681976 GCTAAGAAGCCCAGATGAGCAA 60.682 50.000 0.00 0.00 43.40 3.91
1463 1509 1.134699 CACGCTAAGAAGCCCAGATGA 60.135 52.381 0.00 0.00 46.68 2.92
1464 1510 1.293924 CACGCTAAGAAGCCCAGATG 58.706 55.000 0.00 0.00 46.68 2.90
1465 1511 0.462759 GCACGCTAAGAAGCCCAGAT 60.463 55.000 0.00 0.00 46.68 2.90
1468 1514 1.375908 CAGCACGCTAAGAAGCCCA 60.376 57.895 0.00 0.00 46.68 5.36
1478 1524 2.031314 CGAATGATGATTTCAGCACGCT 59.969 45.455 0.00 0.00 45.61 5.07
1513 1559 4.647291 AAACGACTAAATGAGCTCAACG 57.353 40.909 22.50 19.40 0.00 4.10
1527 1573 1.445871 GAATACGGGCCAAAACGACT 58.554 50.000 4.39 0.00 0.00 4.18
1528 1574 0.448990 GGAATACGGGCCAAAACGAC 59.551 55.000 4.39 0.00 0.00 4.34
1529 1575 1.020333 CGGAATACGGGCCAAAACGA 61.020 55.000 4.39 0.00 39.42 3.85
1530 1576 1.020333 TCGGAATACGGGCCAAAACG 61.020 55.000 4.39 0.10 44.45 3.60
1531 1577 1.385528 ATCGGAATACGGGCCAAAAC 58.614 50.000 4.39 0.00 44.45 2.43
1532 1578 1.746220 CAATCGGAATACGGGCCAAAA 59.254 47.619 4.39 0.00 44.45 2.44
1533 1579 1.384525 CAATCGGAATACGGGCCAAA 58.615 50.000 4.39 0.00 44.45 3.28
1534 1580 0.464735 CCAATCGGAATACGGGCCAA 60.465 55.000 4.39 0.00 44.45 4.52
1640 1686 3.369147 ACATCAGACGAATGAAAAGCTCG 59.631 43.478 0.00 0.00 38.53 5.03
1676 1722 2.270986 CCAAGCACCCAAGGCAGAC 61.271 63.158 0.00 0.00 0.00 3.51
1689 1736 2.359975 CGGAGTTCCCACCCAAGC 60.360 66.667 0.00 0.00 34.14 4.01
1695 1742 2.358737 CACAGCCGGAGTTCCCAC 60.359 66.667 5.05 0.00 34.14 4.61
1701 1748 4.008933 GTGGAGCACAGCCGGAGT 62.009 66.667 5.05 0.00 34.08 3.85
1726 1773 0.109781 CCAATTCGCAGTGGAAACCG 60.110 55.000 0.00 0.00 40.98 4.44
1728 1775 2.050477 CACCAATTCGCAGTGGAAAC 57.950 50.000 8.90 0.00 40.98 2.78
1746 1793 6.027025 ACTACATCTATAGGACAAGACCCA 57.973 41.667 0.00 0.00 0.00 4.51
1789 1840 5.777802 ACAAATATGCATTCAACACCGAAA 58.222 33.333 3.54 0.00 0.00 3.46
1817 1868 4.045590 AGGAACCAGAACCTCCTAAGTCTA 59.954 45.833 0.00 0.00 37.83 2.59
1818 1869 3.174779 GGAACCAGAACCTCCTAAGTCT 58.825 50.000 0.00 0.00 0.00 3.24
1819 1870 3.055747 CAGGAACCAGAACCTCCTAAGTC 60.056 52.174 0.00 0.00 37.49 3.01
1820 1871 2.907042 CAGGAACCAGAACCTCCTAAGT 59.093 50.000 0.00 0.00 37.49 2.24
1821 1872 2.355209 GCAGGAACCAGAACCTCCTAAG 60.355 54.545 0.00 0.00 37.49 2.18
1822 1873 1.628846 GCAGGAACCAGAACCTCCTAA 59.371 52.381 0.00 0.00 37.49 2.69
1823 1874 1.203313 AGCAGGAACCAGAACCTCCTA 60.203 52.381 0.00 0.00 37.49 2.94
1824 1875 0.474660 AGCAGGAACCAGAACCTCCT 60.475 55.000 0.00 0.00 40.33 3.69
1834 1885 5.650543 CATAAACATAACCAAGCAGGAACC 58.349 41.667 1.83 0.00 41.22 3.62
2159 2213 7.012327 CCATACCATACAGTTACTGGTGAAATG 59.988 40.741 17.21 17.12 43.05 2.32
2219 2273 4.095483 CAGAAACTTGACAAAGACAGCTGT 59.905 41.667 21.88 21.88 36.84 4.40
2283 2337 5.215252 TCCAAAGACTCCACTTCTACTTG 57.785 43.478 0.00 0.00 0.00 3.16
2448 2502 7.690256 ACCTCTGAAACACATCCTTAGTATTT 58.310 34.615 0.00 0.00 0.00 1.40
2491 2545 4.705023 GTGCACCAGAACTACCCATTAAAT 59.295 41.667 5.22 0.00 0.00 1.40
2521 2575 4.932146 AGCATAATTAATTTGGTCACGCC 58.068 39.130 5.91 0.00 37.90 5.68
2566 2620 6.969993 ATTAAACAGCTCTTACCCAAACAA 57.030 33.333 0.00 0.00 0.00 2.83
2598 2652 7.934457 ACAACTATAAGCATGAAATGATGTCC 58.066 34.615 0.00 0.00 45.83 4.02
2609 2663 3.313526 GGCTGGTGACAACTATAAGCATG 59.686 47.826 3.28 0.00 42.06 4.06
2682 2736 0.850100 TTCCAGTTTTCCCCTGCAGA 59.150 50.000 17.39 0.00 0.00 4.26
2799 2853 5.677319 ATTCGAGAATACTGACCTTTCCA 57.323 39.130 0.00 0.00 0.00 3.53
2869 2923 4.959596 AAGACTGCTTTGCATCACATAG 57.040 40.909 0.00 0.00 38.13 2.23
2905 2959 4.515191 GTCTCAGTTTGCCTTGATAACACA 59.485 41.667 0.00 0.00 0.00 3.72
2906 2960 4.757149 AGTCTCAGTTTGCCTTGATAACAC 59.243 41.667 0.00 0.00 0.00 3.32
2937 2991 8.025445 ACAACTAGCATTAAATCAAGCTTGAAG 58.975 33.333 31.55 21.91 41.13 3.02
2983 3037 8.805175 TGGACATTTTGTAATCATGAGAAATGT 58.195 29.630 22.71 22.71 45.21 2.71
3016 3070 6.553100 ACCCAACTGGATAAACTTCAAAATGA 59.447 34.615 0.00 0.00 37.39 2.57
3063 3117 4.160439 TCATAGTTCCACCTTGCTCACTAG 59.840 45.833 0.00 0.00 0.00 2.57
3094 3148 8.458843 CAACTAATGACTTAACCGATGGAAAAT 58.541 33.333 0.00 0.00 0.00 1.82
3126 3180 7.229506 GCCTCTAGCTAATTTGACATACCAAAT 59.770 37.037 0.00 0.00 42.02 2.32
3127 3181 6.542370 GCCTCTAGCTAATTTGACATACCAAA 59.458 38.462 0.00 0.00 38.22 3.28
3323 3378 9.860898 GTTTAATGAACTAAATGAGGAGCAAAT 57.139 29.630 0.00 0.00 35.31 2.32
3494 3554 2.295909 GCTGGCAACTGTGTCCAAAATA 59.704 45.455 0.00 0.00 37.92 1.40
3930 3990 3.124466 CGATGTCCAATGCGAAGTTAACA 59.876 43.478 8.61 0.00 0.00 2.41
3972 4032 3.243134 GGGAGTAGTAAGAGCTAAGCACG 60.243 52.174 0.00 0.00 0.00 5.34
4192 4384 8.712228 AATTTTCCAAGAGAAGGATACAGTTT 57.288 30.769 0.00 0.00 35.40 2.66
4222 4414 8.581253 AAAACTATATATTCAAGGGCATAGGC 57.419 34.615 0.00 0.00 40.13 3.93
4309 4501 3.494398 GGCGCATAAGAGAATCAGGGTTA 60.494 47.826 10.83 0.00 37.82 2.85
4339 4531 8.397575 TCTGATTAGCGAGTATCTTACAGATT 57.602 34.615 0.00 0.00 36.20 2.40
4415 4607 6.403636 CGAATTACAAAAGTGAATGGAGGGAG 60.404 42.308 0.00 0.00 0.00 4.30
4416 4608 5.414454 CGAATTACAAAAGTGAATGGAGGGA 59.586 40.000 0.00 0.00 0.00 4.20
4417 4609 5.183140 ACGAATTACAAAAGTGAATGGAGGG 59.817 40.000 0.00 0.00 0.00 4.30
4418 4610 6.254281 ACGAATTACAAAAGTGAATGGAGG 57.746 37.500 0.00 0.00 0.00 4.30
4419 4611 7.860373 TGAAACGAATTACAAAAGTGAATGGAG 59.140 33.333 0.00 0.00 0.00 3.86
4420 4612 7.708051 TGAAACGAATTACAAAAGTGAATGGA 58.292 30.769 0.00 0.00 0.00 3.41
4421 4613 7.860373 TCTGAAACGAATTACAAAAGTGAATGG 59.140 33.333 0.00 0.00 0.00 3.16
4422 4614 8.682016 GTCTGAAACGAATTACAAAAGTGAATG 58.318 33.333 0.00 0.00 0.00 2.67
4423 4615 8.402472 TGTCTGAAACGAATTACAAAAGTGAAT 58.598 29.630 0.00 0.00 0.00 2.57
4424 4616 7.753659 TGTCTGAAACGAATTACAAAAGTGAA 58.246 30.769 0.00 0.00 0.00 3.18
4425 4617 7.310072 TGTCTGAAACGAATTACAAAAGTGA 57.690 32.000 0.00 0.00 0.00 3.41
4426 4618 7.696453 AGTTGTCTGAAACGAATTACAAAAGTG 59.304 33.333 0.00 0.00 35.13 3.16
4427 4619 7.758495 AGTTGTCTGAAACGAATTACAAAAGT 58.242 30.769 0.00 0.00 35.13 2.66
4428 4620 7.908082 TGAGTTGTCTGAAACGAATTACAAAAG 59.092 33.333 0.00 0.00 35.13 2.27
4429 4621 7.753659 TGAGTTGTCTGAAACGAATTACAAAA 58.246 30.769 0.00 0.00 35.13 2.44
4430 4622 7.310072 TGAGTTGTCTGAAACGAATTACAAA 57.690 32.000 0.00 0.00 35.13 2.83
4431 4623 6.912203 TGAGTTGTCTGAAACGAATTACAA 57.088 33.333 0.00 0.00 35.13 2.41
4432 4624 6.912203 TTGAGTTGTCTGAAACGAATTACA 57.088 33.333 0.00 0.00 35.13 2.41
4433 4625 8.782533 ATTTTGAGTTGTCTGAAACGAATTAC 57.217 30.769 0.00 0.00 35.13 1.89
4435 4627 8.076178 CCTATTTTGAGTTGTCTGAAACGAATT 58.924 33.333 0.00 0.00 35.13 2.17
4436 4628 7.584987 CCTATTTTGAGTTGTCTGAAACGAAT 58.415 34.615 0.00 0.00 35.13 3.34
4437 4629 6.512741 GCCTATTTTGAGTTGTCTGAAACGAA 60.513 38.462 0.00 0.00 35.13 3.85
4438 4630 5.049680 GCCTATTTTGAGTTGTCTGAAACGA 60.050 40.000 0.00 0.00 35.13 3.85
4439 4631 5.049405 AGCCTATTTTGAGTTGTCTGAAACG 60.049 40.000 0.00 0.00 35.13 3.60
4440 4632 6.145535 CAGCCTATTTTGAGTTGTCTGAAAC 58.854 40.000 0.00 0.00 0.00 2.78
4441 4633 5.827797 ACAGCCTATTTTGAGTTGTCTGAAA 59.172 36.000 0.00 0.00 0.00 2.69
4442 4634 5.376625 ACAGCCTATTTTGAGTTGTCTGAA 58.623 37.500 0.00 0.00 0.00 3.02
4443 4635 4.973168 ACAGCCTATTTTGAGTTGTCTGA 58.027 39.130 0.00 0.00 0.00 3.27
4444 4636 5.695851 AACAGCCTATTTTGAGTTGTCTG 57.304 39.130 0.00 0.00 0.00 3.51
4445 4637 6.096846 ACAAAACAGCCTATTTTGAGTTGTCT 59.903 34.615 14.72 0.00 45.75 3.41
4446 4638 6.273071 ACAAAACAGCCTATTTTGAGTTGTC 58.727 36.000 14.72 0.00 45.75 3.18
4447 4639 6.220726 ACAAAACAGCCTATTTTGAGTTGT 57.779 33.333 14.72 6.63 45.75 3.32
4448 4640 7.199766 TGTACAAAACAGCCTATTTTGAGTTG 58.800 34.615 14.72 6.15 45.75 3.16
4449 4641 7.341445 TGTACAAAACAGCCTATTTTGAGTT 57.659 32.000 14.72 0.00 45.75 3.01
4450 4642 6.952773 TGTACAAAACAGCCTATTTTGAGT 57.047 33.333 14.72 0.00 45.75 3.41
4451 4643 7.867403 ACAATGTACAAAACAGCCTATTTTGAG 59.133 33.333 14.72 1.08 45.75 3.02
4452 4644 7.721402 ACAATGTACAAAACAGCCTATTTTGA 58.279 30.769 14.72 0.00 45.75 2.69
4454 4646 7.867403 CAGACAATGTACAAAACAGCCTATTTT 59.133 33.333 0.00 0.00 42.70 1.82
4455 4647 7.230510 TCAGACAATGTACAAAACAGCCTATTT 59.769 33.333 0.00 0.00 42.70 1.40
4456 4648 6.714810 TCAGACAATGTACAAAACAGCCTATT 59.285 34.615 0.00 0.00 42.70 1.73
4457 4649 6.237901 TCAGACAATGTACAAAACAGCCTAT 58.762 36.000 0.00 0.00 42.70 2.57
4458 4650 5.616270 TCAGACAATGTACAAAACAGCCTA 58.384 37.500 0.00 0.00 42.70 3.93
4459 4651 4.460263 TCAGACAATGTACAAAACAGCCT 58.540 39.130 0.00 0.00 42.70 4.58
4460 4652 4.829064 TCAGACAATGTACAAAACAGCC 57.171 40.909 0.00 0.00 42.70 4.85
4461 4653 6.697019 ACATTTCAGACAATGTACAAAACAGC 59.303 34.615 0.00 0.00 44.08 4.40
4462 4654 8.131100 AGACATTTCAGACAATGTACAAAACAG 58.869 33.333 0.00 0.00 45.55 3.16
4463 4655 7.995289 AGACATTTCAGACAATGTACAAAACA 58.005 30.769 0.00 0.00 45.55 2.83
4464 4656 8.856490 AAGACATTTCAGACAATGTACAAAAC 57.144 30.769 0.00 0.00 45.55 2.43
4465 4657 8.681806 TGAAGACATTTCAGACAATGTACAAAA 58.318 29.630 0.00 0.00 45.55 2.44
4466 4658 8.219546 TGAAGACATTTCAGACAATGTACAAA 57.780 30.769 0.00 0.00 45.55 2.83
4467 4659 7.800155 TGAAGACATTTCAGACAATGTACAA 57.200 32.000 0.00 0.00 45.55 2.41
4468 4660 7.041167 CCTTGAAGACATTTCAGACAATGTACA 60.041 37.037 0.00 0.00 45.55 2.90
4469 4661 7.301054 CCTTGAAGACATTTCAGACAATGTAC 58.699 38.462 9.58 0.00 45.55 2.90
4470 4662 6.072508 GCCTTGAAGACATTTCAGACAATGTA 60.073 38.462 9.58 0.00 45.55 2.29
4472 4664 5.159209 GCCTTGAAGACATTTCAGACAATG 58.841 41.667 0.00 0.00 39.67 2.82
4473 4665 4.219288 GGCCTTGAAGACATTTCAGACAAT 59.781 41.667 0.00 0.00 0.00 2.71
4474 4666 3.569701 GGCCTTGAAGACATTTCAGACAA 59.430 43.478 0.00 0.00 0.00 3.18
4475 4667 3.149196 GGCCTTGAAGACATTTCAGACA 58.851 45.455 0.00 0.00 0.00 3.41
4476 4668 3.416156 AGGCCTTGAAGACATTTCAGAC 58.584 45.455 0.00 0.00 0.00 3.51
4477 4669 3.795688 AGGCCTTGAAGACATTTCAGA 57.204 42.857 0.00 0.00 0.00 3.27
4478 4670 7.630242 TTATAAGGCCTTGAAGACATTTCAG 57.370 36.000 28.77 0.00 0.00 3.02
4479 4671 8.415950 TTTTATAAGGCCTTGAAGACATTTCA 57.584 30.769 28.77 3.15 0.00 2.69
4480 4672 8.523658 ACTTTTATAAGGCCTTGAAGACATTTC 58.476 33.333 28.77 0.00 35.61 2.17
4481 4673 8.306761 CACTTTTATAAGGCCTTGAAGACATTT 58.693 33.333 28.77 0.00 35.61 2.32
4482 4674 7.669722 TCACTTTTATAAGGCCTTGAAGACATT 59.330 33.333 28.77 0.00 35.61 2.71
4483 4675 7.175104 TCACTTTTATAAGGCCTTGAAGACAT 58.825 34.615 28.77 14.50 35.61 3.06
4484 4676 6.539173 TCACTTTTATAAGGCCTTGAAGACA 58.461 36.000 28.77 7.10 35.61 3.41
4485 4677 7.040686 TGTTCACTTTTATAAGGCCTTGAAGAC 60.041 37.037 28.77 17.56 35.61 3.01
4486 4678 7.001674 TGTTCACTTTTATAAGGCCTTGAAGA 58.998 34.615 28.77 15.87 35.61 2.87
4487 4679 7.174946 TCTGTTCACTTTTATAAGGCCTTGAAG 59.825 37.037 28.77 24.09 35.61 3.02
4488 4680 7.001674 TCTGTTCACTTTTATAAGGCCTTGAA 58.998 34.615 28.77 17.44 35.61 2.69
4489 4681 6.539173 TCTGTTCACTTTTATAAGGCCTTGA 58.461 36.000 28.77 11.98 35.61 3.02
4490 4682 6.127897 CCTCTGTTCACTTTTATAAGGCCTTG 60.128 42.308 28.77 12.48 35.61 3.61
4491 4683 5.946377 CCTCTGTTCACTTTTATAAGGCCTT 59.054 40.000 24.18 24.18 35.61 4.35
4492 4684 5.250774 TCCTCTGTTCACTTTTATAAGGCCT 59.749 40.000 0.00 0.00 35.61 5.19
4493 4685 5.497474 TCCTCTGTTCACTTTTATAAGGCC 58.503 41.667 0.00 0.00 35.61 5.19
4494 4686 5.586643 CCTCCTCTGTTCACTTTTATAAGGC 59.413 44.000 0.00 0.00 35.61 4.35
4495 4687 6.712276 ACCTCCTCTGTTCACTTTTATAAGG 58.288 40.000 0.00 0.00 35.61 2.69
4496 4688 8.532819 ACTACCTCCTCTGTTCACTTTTATAAG 58.467 37.037 0.00 0.00 37.40 1.73
4497 4689 8.431910 ACTACCTCCTCTGTTCACTTTTATAA 57.568 34.615 0.00 0.00 0.00 0.98
4498 4690 9.537852 TTACTACCTCCTCTGTTCACTTTTATA 57.462 33.333 0.00 0.00 0.00 0.98
4499 4691 6.936968 ACTACCTCCTCTGTTCACTTTTAT 57.063 37.500 0.00 0.00 0.00 1.40
4500 4692 7.525029 GCTTACTACCTCCTCTGTTCACTTTTA 60.525 40.741 0.00 0.00 0.00 1.52
4501 4693 6.741801 GCTTACTACCTCCTCTGTTCACTTTT 60.742 42.308 0.00 0.00 0.00 2.27
4502 4694 5.279556 GCTTACTACCTCCTCTGTTCACTTT 60.280 44.000 0.00 0.00 0.00 2.66
4503 4695 4.221041 GCTTACTACCTCCTCTGTTCACTT 59.779 45.833 0.00 0.00 0.00 3.16
4504 4696 3.764972 GCTTACTACCTCCTCTGTTCACT 59.235 47.826 0.00 0.00 0.00 3.41
4505 4697 3.764972 AGCTTACTACCTCCTCTGTTCAC 59.235 47.826 0.00 0.00 0.00 3.18
4506 4698 3.764434 CAGCTTACTACCTCCTCTGTTCA 59.236 47.826 0.00 0.00 0.00 3.18
4507 4699 3.429684 GCAGCTTACTACCTCCTCTGTTC 60.430 52.174 0.00 0.00 0.00 3.18
4508 4700 2.498078 GCAGCTTACTACCTCCTCTGTT 59.502 50.000 0.00 0.00 0.00 3.16
4509 4701 2.104170 GCAGCTTACTACCTCCTCTGT 58.896 52.381 0.00 0.00 0.00 3.41
4510 4702 2.100584 CAGCAGCTTACTACCTCCTCTG 59.899 54.545 0.00 0.00 0.00 3.35
4511 4703 2.383855 CAGCAGCTTACTACCTCCTCT 58.616 52.381 0.00 0.00 0.00 3.69
4512 4704 1.410882 CCAGCAGCTTACTACCTCCTC 59.589 57.143 0.00 0.00 0.00 3.71
4513 4705 1.273324 ACCAGCAGCTTACTACCTCCT 60.273 52.381 0.00 0.00 0.00 3.69
4514 4706 1.196012 ACCAGCAGCTTACTACCTCC 58.804 55.000 0.00 0.00 0.00 4.30
4515 4707 3.025262 AGTACCAGCAGCTTACTACCTC 58.975 50.000 5.13 0.00 0.00 3.85
4516 4708 3.103080 AGTACCAGCAGCTTACTACCT 57.897 47.619 5.13 0.00 0.00 3.08
4517 4709 3.952967 ACTAGTACCAGCAGCTTACTACC 59.047 47.826 9.19 0.00 0.00 3.18
4518 4710 5.579564 AACTAGTACCAGCAGCTTACTAC 57.420 43.478 9.19 2.37 0.00 2.73
4519 4711 8.216423 ACTATAACTAGTACCAGCAGCTTACTA 58.784 37.037 11.82 11.82 36.40 1.82
4520 4712 7.013464 CACTATAACTAGTACCAGCAGCTTACT 59.987 40.741 10.91 10.91 35.99 2.24
4525 4717 4.796618 GCCACTATAACTAGTACCAGCAGC 60.797 50.000 0.00 0.00 35.99 5.25
4529 4721 5.304614 ACCATGCCACTATAACTAGTACCAG 59.695 44.000 0.00 0.00 35.99 4.00
4572 4764 6.151985 TGTTAGTAATAAACCCACATTGCAGG 59.848 38.462 0.00 0.00 0.00 4.85
4590 4782 3.243839 GGTTCAAGGACGTGGTGTTAGTA 60.244 47.826 0.00 0.00 0.00 1.82
4644 4838 9.643693 ATGCAAAGTACTTATTTCCAAAGAATG 57.356 29.630 8.92 0.00 0.00 2.67
4685 4879 9.511272 CCAGATCAAGTGATTATTCATATGGAA 57.489 33.333 2.13 0.00 35.86 3.53
4844 5038 5.833082 TCGCATTAGCAAAAACAGGTAAAA 58.167 33.333 0.00 0.00 42.27 1.52
5113 5308 1.043816 AGGAGCCATGTACCGATCTG 58.956 55.000 0.00 0.00 0.00 2.90
5810 6431 9.806448 TTAGCTAAAAGCAATAATGATATGGGA 57.194 29.630 2.97 0.00 45.56 4.37
5889 6510 7.573238 TGATAAATGGTAAAGGGTGGGTATCTA 59.427 37.037 0.00 0.00 0.00 1.98
5890 6511 6.391649 TGATAAATGGTAAAGGGTGGGTATCT 59.608 38.462 0.00 0.00 0.00 1.98
5891 6512 6.607019 TGATAAATGGTAAAGGGTGGGTATC 58.393 40.000 0.00 0.00 0.00 2.24
5892 6513 6.391649 TCTGATAAATGGTAAAGGGTGGGTAT 59.608 38.462 0.00 0.00 0.00 2.73
5893 6514 5.732170 TCTGATAAATGGTAAAGGGTGGGTA 59.268 40.000 0.00 0.00 0.00 3.69
5928 6551 5.917447 GTCTTCTGAAGCAATTTCAAGGAAC 59.083 40.000 12.54 0.00 44.84 3.62
5929 6552 5.010012 GGTCTTCTGAAGCAATTTCAAGGAA 59.990 40.000 12.54 0.00 44.84 3.36
5930 6553 4.520492 GGTCTTCTGAAGCAATTTCAAGGA 59.480 41.667 12.54 0.00 44.84 3.36
6157 6782 2.514458 ATAAAACTGCACCCCCTCAG 57.486 50.000 0.00 0.00 36.45 3.35
6159 6784 3.161866 TCAAATAAAACTGCACCCCCTC 58.838 45.455 0.00 0.00 0.00 4.30
6160 6785 3.165071 CTCAAATAAAACTGCACCCCCT 58.835 45.455 0.00 0.00 0.00 4.79
6166 6794 7.719633 AGAGGAAACTACTCAAATAAAACTGCA 59.280 33.333 0.00 0.00 44.43 4.41
6167 6795 8.017946 CAGAGGAAACTACTCAAATAAAACTGC 58.982 37.037 0.00 0.00 44.43 4.40
6196 6824 5.553290 TGAAAATCACACACAAAGAACGA 57.447 34.783 0.00 0.00 0.00 3.85
6205 6833 5.755330 AAACAACGTTGAAAATCACACAC 57.245 34.783 33.66 0.00 0.00 3.82
6244 6890 2.614057 CTGACGCTCAGGAACAACTTTT 59.386 45.455 7.01 0.00 40.71 2.27
6301 6947 2.609747 TCTGTTGAAGACTAGGGTGCT 58.390 47.619 0.00 0.00 0.00 4.40
6329 6975 3.245984 TGGGACAGAGGGAGTATTTCAGA 60.246 47.826 0.00 0.00 0.00 3.27
6387 7034 5.885912 TGCATAGAAATTTGTTACTCCCTCC 59.114 40.000 0.00 0.00 0.00 4.30
6468 7115 5.023452 TGTCATGGTACTTCATGTAGACCT 58.977 41.667 6.32 0.00 43.52 3.85
6509 7156 8.586570 TCAATTTTTGCGTTGAATACTGATTT 57.413 26.923 0.00 0.00 31.85 2.17
6568 7215 4.157289 ACAATGCACAAGAAGACATGATCC 59.843 41.667 0.00 0.00 0.00 3.36
6580 7227 6.812656 TCTTATGCCAATAAACAATGCACAAG 59.187 34.615 0.00 0.00 37.70 3.16
6581 7228 6.695429 TCTTATGCCAATAAACAATGCACAA 58.305 32.000 0.00 0.00 34.33 3.33
6582 7229 6.278172 TCTTATGCCAATAAACAATGCACA 57.722 33.333 0.00 0.00 34.33 4.57
6583 7230 7.115378 GCTATCTTATGCCAATAAACAATGCAC 59.885 37.037 0.00 0.00 34.33 4.57
6584 7231 7.147312 GCTATCTTATGCCAATAAACAATGCA 58.853 34.615 0.00 0.00 36.23 3.96
6585 7232 7.572502 GCTATCTTATGCCAATAAACAATGC 57.427 36.000 0.00 0.00 0.00 3.56
6602 7249 9.657419 CTGGTTAAATCAAAATTTGGCTATCTT 57.343 29.630 5.83 0.00 35.84 2.40
6603 7250 8.815912 ACTGGTTAAATCAAAATTTGGCTATCT 58.184 29.630 5.83 0.00 35.84 1.98
6604 7251 8.872845 CACTGGTTAAATCAAAATTTGGCTATC 58.127 33.333 5.83 0.00 35.84 2.08
6605 7252 7.334171 GCACTGGTTAAATCAAAATTTGGCTAT 59.666 33.333 5.83 0.00 35.84 2.97
6606 7253 6.648725 GCACTGGTTAAATCAAAATTTGGCTA 59.351 34.615 5.83 0.00 35.84 3.93
6607 7254 5.469760 GCACTGGTTAAATCAAAATTTGGCT 59.530 36.000 5.83 0.00 35.84 4.75
6608 7255 5.238214 TGCACTGGTTAAATCAAAATTTGGC 59.762 36.000 5.83 0.00 35.84 4.52
6609 7256 6.857777 TGCACTGGTTAAATCAAAATTTGG 57.142 33.333 5.83 0.00 35.84 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.