Multiple sequence alignment - TraesCS2D01G160300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G160300 chr2D 100.000 2237 0 0 1 2237 103130396 103128160 0.000000e+00 4132
1 TraesCS2D01G160300 chr2D 93.562 233 11 3 254 485 102944005 102944234 5.910000e-91 344
2 TraesCS2D01G160300 chr2D 84.830 323 26 9 254 573 102954989 102955291 1.000000e-78 303
3 TraesCS2D01G160300 chr2D 87.938 257 25 5 232 485 106265627 106265374 4.670000e-77 298
4 TraesCS2D01G160300 chr2B 93.923 1629 76 8 627 2235 154595205 154593580 0.000000e+00 2438
5 TraesCS2D01G160300 chr2B 85.000 440 48 12 213 640 154595657 154595224 4.410000e-117 431
6 TraesCS2D01G160300 chr2B 91.810 232 18 1 247 477 154491829 154492060 2.770000e-84 322
7 TraesCS2D01G160300 chr2B 90.987 233 18 3 254 485 154490563 154490793 6.000000e-81 311
8 TraesCS2D01G160300 chr2B 88.672 256 23 6 232 485 154907084 154906833 7.760000e-80 307
9 TraesCS2D01G160300 chr2B 88.672 256 24 5 232 485 154930241 154929989 7.760000e-80 307
10 TraesCS2D01G160300 chr2B 86.857 175 10 10 1 175 154499542 154499703 1.360000e-42 183
11 TraesCS2D01G160300 chr2B 85.795 176 11 11 1 175 154596112 154595950 8.210000e-40 174
12 TraesCS2D01G160300 chr2A 94.088 1573 69 10 664 2212 102133028 102131456 0.000000e+00 2368
13 TraesCS2D01G160300 chr2A 85.100 349 38 14 232 573 102043423 102043764 5.910000e-91 344
14 TraesCS2D01G160300 chr2A 84.332 217 19 4 3 217 102292018 102291815 4.870000e-47 198
15 TraesCS2D01G160300 chr2A 89.908 109 8 2 1 109 102138722 102138617 1.080000e-28 137
16 TraesCS2D01G160300 chr2A 90.099 101 9 1 118 218 102138094 102137995 1.800000e-26 130
17 TraesCS2D01G160300 chr1B 83.178 321 50 4 254 573 17392138 17391821 7.820000e-75 291


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G160300 chr2D 103128160 103130396 2236 True 4132.000000 4132 100.000000 1 2237 1 chr2D.!!$R1 2236
1 TraesCS2D01G160300 chr2B 154593580 154596112 2532 True 1014.333333 2438 88.239333 1 2235 3 chr2B.!!$R3 2234
2 TraesCS2D01G160300 chr2B 154490563 154492060 1497 False 316.500000 322 91.398500 247 485 2 chr2B.!!$F2 238
3 TraesCS2D01G160300 chr2A 102131456 102133028 1572 True 2368.000000 2368 94.088000 664 2212 1 chr2A.!!$R1 1548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
335 621 0.036765 TGGTGCGAGCGATTAAAGGT 60.037 50.0 0.0 0.0 0.0 3.5 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1327 2819 1.244352 GCGCCGTAAACATCGAAAAC 58.756 50.0 0.0 0.0 0.0 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.642908 TTAAACTGATCGAATAATCATCGTGT 57.357 30.769 0.00 0.00 40.99 4.49
30 31 5.161358 TGATCGAATAATCATCGTGTAGCC 58.839 41.667 0.00 0.00 40.99 3.93
40 41 2.624316 TCGTGTAGCCAAAGTCTACG 57.376 50.000 0.00 0.00 39.30 3.51
80 81 2.851071 GCCTCTGCTCCTCGCGTAT 61.851 63.158 5.77 0.00 43.27 3.06
82 83 1.448119 CCTCTGCTCCTCGCGTATCA 61.448 60.000 5.77 0.00 43.27 2.15
86 87 1.000827 CTGCTCCTCGCGTATCATTCT 60.001 52.381 5.77 0.00 43.27 2.40
141 142 3.186702 GCTAAGCTAAGCTAAGCACCT 57.813 47.619 0.00 0.00 45.30 4.00
147 148 2.910199 CTAAGCTAAGCACCTGCATGA 58.090 47.619 0.00 0.00 45.16 3.07
184 185 6.705863 AAAAGCTGTTTGAATTCTGTCTCT 57.294 33.333 7.05 0.00 0.00 3.10
185 186 5.686159 AAGCTGTTTGAATTCTGTCTCTG 57.314 39.130 7.05 0.00 0.00 3.35
186 187 4.070716 AGCTGTTTGAATTCTGTCTCTGG 58.929 43.478 7.05 0.00 0.00 3.86
187 188 3.365767 GCTGTTTGAATTCTGTCTCTGGC 60.366 47.826 7.05 0.00 0.00 4.85
188 189 4.070716 CTGTTTGAATTCTGTCTCTGGCT 58.929 43.478 7.05 0.00 0.00 4.75
189 190 3.817084 TGTTTGAATTCTGTCTCTGGCTG 59.183 43.478 7.05 0.00 0.00 4.85
190 191 3.777106 TTGAATTCTGTCTCTGGCTGT 57.223 42.857 7.05 0.00 0.00 4.40
191 192 3.049708 TGAATTCTGTCTCTGGCTGTG 57.950 47.619 7.05 0.00 0.00 3.66
192 193 2.289882 TGAATTCTGTCTCTGGCTGTGG 60.290 50.000 7.05 0.00 0.00 4.17
193 194 0.617413 ATTCTGTCTCTGGCTGTGGG 59.383 55.000 0.00 0.00 0.00 4.61
194 195 1.483595 TTCTGTCTCTGGCTGTGGGG 61.484 60.000 0.00 0.00 0.00 4.96
195 196 2.122413 TGTCTCTGGCTGTGGGGT 60.122 61.111 0.00 0.00 0.00 4.95
196 197 2.177594 CTGTCTCTGGCTGTGGGGTC 62.178 65.000 0.00 0.00 0.00 4.46
197 198 2.997315 TCTCTGGCTGTGGGGTCG 60.997 66.667 0.00 0.00 0.00 4.79
198 199 4.087892 CTCTGGCTGTGGGGTCGG 62.088 72.222 0.00 0.00 0.00 4.79
199 200 4.954118 TCTGGCTGTGGGGTCGGT 62.954 66.667 0.00 0.00 0.00 4.69
200 201 4.394712 CTGGCTGTGGGGTCGGTC 62.395 72.222 0.00 0.00 0.00 4.79
285 570 1.306482 CCTGGGCAAGGGAGAGAGA 60.306 63.158 0.00 0.00 43.15 3.10
289 574 1.306568 GGCAAGGGAGAGAGAGGGT 60.307 63.158 0.00 0.00 0.00 4.34
297 582 2.766229 GAGAGAGGGTGGGGAGCC 60.766 72.222 0.00 0.00 0.00 4.70
309 595 1.070957 GGGAGCCGGGCTACATAAC 59.929 63.158 31.47 13.74 42.18 1.89
335 621 0.036765 TGGTGCGAGCGATTAAAGGT 60.037 50.000 0.00 0.00 0.00 3.50
432 718 8.028938 ACACTAAGCAGCATACCTTAATTTTTG 58.971 33.333 0.00 0.00 0.00 2.44
472 759 0.253630 AGAAGGCCCCACCAATCCTA 60.254 55.000 0.00 0.00 43.14 2.94
477 764 2.039418 GGCCCCACCAATCCTAAATTC 58.961 52.381 0.00 0.00 38.86 2.17
481 768 4.622933 GCCCCACCAATCCTAAATTCAAAC 60.623 45.833 0.00 0.00 0.00 2.93
485 772 6.650390 CCCACCAATCCTAAATTCAAACTTTG 59.350 38.462 0.00 0.00 0.00 2.77
488 775 9.757227 CACCAATCCTAAATTCAAACTTTGTAA 57.243 29.630 1.44 0.00 0.00 2.41
494 781 8.919145 TCCTAAATTCAAACTTTGTAATGTGGT 58.081 29.630 1.44 0.00 0.00 4.16
512 799 6.961360 TGTGGTACATTTGGACAAAATACA 57.039 33.333 17.22 5.12 44.52 2.29
524 811 9.695526 TTTGGACAAAATACAATGATCTTGAAG 57.304 29.630 10.61 0.00 0.00 3.02
533 820 5.388654 ACAATGATCTTGAAGGGTGTCTTT 58.611 37.500 10.61 0.00 35.50 2.52
574 862 9.724839 CTGCAAATTCTGAATTTCAAAATTTGT 57.275 25.926 31.70 12.04 38.97 2.83
600 2031 5.617529 GCATTTGCTAATTTTTGAAGGGTGC 60.618 40.000 0.00 0.00 38.21 5.01
615 2046 1.609320 GGGTGCCTTCTCTGTGAGAAC 60.609 57.143 5.97 0.00 42.78 3.01
623 2054 0.322008 CTCTGTGAGAACAAGGCCCC 60.322 60.000 0.00 0.00 0.00 5.80
630 2061 0.542702 AGAACAAGGCCCCCACAATG 60.543 55.000 0.00 0.00 0.00 2.82
639 2102 2.026356 GGCCCCCACAATGCTTAATTTT 60.026 45.455 0.00 0.00 0.00 1.82
699 2162 1.620323 AGTTTTGGCTGGGCATTTCTC 59.380 47.619 0.00 0.00 0.00 2.87
765 2251 5.763204 TGCCTTAAAACTCCAAGTTCTGTAG 59.237 40.000 0.00 0.00 37.47 2.74
766 2252 5.334957 GCCTTAAAACTCCAAGTTCTGTAGC 60.335 44.000 0.00 0.00 37.47 3.58
794 2281 0.179070 GCATCTCTCGGAAGGGGAAC 60.179 60.000 0.00 0.00 0.00 3.62
985 2477 5.557893 GCTCGTTCATCATAAACTGATCAGC 60.558 44.000 22.83 0.00 42.91 4.26
1186 2678 2.828549 ACGCAAATGATCCGGGGC 60.829 61.111 0.00 0.00 0.00 5.80
1254 2746 1.351017 TGAGTTGACCCTCCCAATGAC 59.649 52.381 0.00 0.00 0.00 3.06
1327 2819 2.507484 TCAGGCATGGAAGTTGTTGAG 58.493 47.619 0.00 0.00 0.00 3.02
1397 2889 2.238646 TCCGGTTGGCTATGATCTTTGT 59.761 45.455 0.00 0.00 34.14 2.83
1510 3002 0.673644 CTTCGGGTTTGTCGGCATCT 60.674 55.000 0.00 0.00 0.00 2.90
1586 3078 1.822990 CAGTTGGGCTCATCTGCAATT 59.177 47.619 11.63 0.00 34.96 2.32
1641 3133 8.593945 ATTGGATAACTTTATTGTCACCACAT 57.406 30.769 0.00 0.00 30.55 3.21
1673 3166 8.461249 AACTTTCTCATTCTATCCCAATCATG 57.539 34.615 0.00 0.00 0.00 3.07
1689 3186 4.785346 ATCATGGGTCAGATAGTTGCTT 57.215 40.909 0.00 0.00 0.00 3.91
1702 3199 6.201044 CAGATAGTTGCTTACCTTAACATCGG 59.799 42.308 0.00 0.00 0.00 4.18
1927 3424 8.734386 GTTTTGGACAAAGTTAGATGATGATCT 58.266 33.333 0.00 0.00 42.03 2.75
1973 3470 3.899734 TGCAATGTTGTGTGTTGATAGC 58.100 40.909 0.00 0.00 0.00 2.97
1980 3477 5.230182 TGTTGTGTGTTGATAGCACTCTAG 58.770 41.667 0.00 0.00 37.70 2.43
1995 3492 4.355437 CACTCTAGTATGAAGCCTGAACG 58.645 47.826 0.00 0.00 0.00 3.95
2006 3503 1.740296 CCTGAACGTTACCTGCCCG 60.740 63.158 0.00 0.00 0.00 6.13
2102 3599 3.694043 TGCCTGCTGTTCTTGTACATA 57.306 42.857 0.00 0.00 0.00 2.29
2166 3663 3.540314 TCTGCAGGCACAACAAAAATT 57.460 38.095 15.13 0.00 0.00 1.82
2204 3701 2.894731 ACTCCTGAACTCTCATGGACA 58.105 47.619 0.00 0.00 30.42 4.02
2212 3709 2.928334 ACTCTCATGGACATGCATTCC 58.072 47.619 16.52 16.52 38.65 3.01
2223 3720 1.945394 CATGCATTCCACTCCAGCTAC 59.055 52.381 0.00 0.00 0.00 3.58
2224 3721 0.983467 TGCATTCCACTCCAGCTACA 59.017 50.000 0.00 0.00 0.00 2.74
2235 3732 3.780294 ACTCCAGCTACACATTTATCCCA 59.220 43.478 0.00 0.00 0.00 4.37
2236 3733 4.413520 ACTCCAGCTACACATTTATCCCAT 59.586 41.667 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 5.161358 GGCTACACGATGATTATTCGATCA 58.839 41.667 0.00 0.00 40.11 2.92
22 23 0.989890 GCGTAGACTTTGGCTACACG 59.010 55.000 10.68 1.96 38.46 4.49
24 25 1.616865 AGTGCGTAGACTTTGGCTACA 59.383 47.619 10.68 0.00 38.46 2.74
25 26 1.993370 CAGTGCGTAGACTTTGGCTAC 59.007 52.381 0.73 0.73 35.90 3.58
26 27 1.067142 CCAGTGCGTAGACTTTGGCTA 60.067 52.381 0.00 0.00 0.00 3.93
30 31 2.163818 TTCCCAGTGCGTAGACTTTG 57.836 50.000 0.00 0.00 0.00 2.77
40 41 3.365364 CGTTGAGAAAAGATTCCCAGTGC 60.365 47.826 0.00 0.00 36.12 4.40
123 124 2.236146 TGCAGGTGCTTAGCTTAGCTTA 59.764 45.455 23.89 1.51 41.76 3.09
124 125 1.003580 TGCAGGTGCTTAGCTTAGCTT 59.996 47.619 23.89 8.42 41.76 3.74
125 126 0.615331 TGCAGGTGCTTAGCTTAGCT 59.385 50.000 23.89 12.67 41.76 3.32
126 127 1.332997 CATGCAGGTGCTTAGCTTAGC 59.667 52.381 17.65 17.65 42.66 3.09
127 128 2.910199 TCATGCAGGTGCTTAGCTTAG 58.090 47.619 5.60 0.00 42.66 2.18
128 129 3.009723 GTTCATGCAGGTGCTTAGCTTA 58.990 45.455 5.60 0.00 42.66 3.09
129 130 1.815003 GTTCATGCAGGTGCTTAGCTT 59.185 47.619 5.60 0.00 42.66 3.74
130 131 1.004044 AGTTCATGCAGGTGCTTAGCT 59.996 47.619 5.60 0.00 42.66 3.32
131 132 1.131883 CAGTTCATGCAGGTGCTTAGC 59.868 52.381 3.18 0.00 42.66 3.09
165 166 3.365767 GCCAGAGACAGAATTCAAACAGC 60.366 47.826 8.44 0.00 0.00 4.40
166 167 4.070716 AGCCAGAGACAGAATTCAAACAG 58.929 43.478 8.44 0.00 0.00 3.16
167 168 3.817084 CAGCCAGAGACAGAATTCAAACA 59.183 43.478 8.44 0.00 0.00 2.83
168 169 3.817647 ACAGCCAGAGACAGAATTCAAAC 59.182 43.478 8.44 0.00 0.00 2.93
169 170 3.817084 CACAGCCAGAGACAGAATTCAAA 59.183 43.478 8.44 0.00 0.00 2.69
170 171 3.405831 CACAGCCAGAGACAGAATTCAA 58.594 45.455 8.44 0.00 0.00 2.69
172 173 2.354259 CCACAGCCAGAGACAGAATTC 58.646 52.381 0.00 0.00 0.00 2.17
173 174 1.004044 CCCACAGCCAGAGACAGAATT 59.996 52.381 0.00 0.00 0.00 2.17
175 176 1.483595 CCCCACAGCCAGAGACAGAA 61.484 60.000 0.00 0.00 0.00 3.02
176 177 1.915266 CCCCACAGCCAGAGACAGA 60.915 63.158 0.00 0.00 0.00 3.41
177 178 2.177594 GACCCCACAGCCAGAGACAG 62.178 65.000 0.00 0.00 0.00 3.51
178 179 2.122413 ACCCCACAGCCAGAGACA 60.122 61.111 0.00 0.00 0.00 3.41
179 180 2.665603 GACCCCACAGCCAGAGAC 59.334 66.667 0.00 0.00 0.00 3.36
180 181 2.997315 CGACCCCACAGCCAGAGA 60.997 66.667 0.00 0.00 0.00 3.10
181 182 4.087892 CCGACCCCACAGCCAGAG 62.088 72.222 0.00 0.00 0.00 3.35
182 183 4.954118 ACCGACCCCACAGCCAGA 62.954 66.667 0.00 0.00 0.00 3.86
183 184 4.394712 GACCGACCCCACAGCCAG 62.395 72.222 0.00 0.00 0.00 4.85
186 187 3.352338 CTACGACCGACCCCACAGC 62.352 68.421 0.00 0.00 0.00 4.40
187 188 2.882876 CTACGACCGACCCCACAG 59.117 66.667 0.00 0.00 0.00 3.66
188 189 3.376078 GCTACGACCGACCCCACA 61.376 66.667 0.00 0.00 0.00 4.17
189 190 4.487412 CGCTACGACCGACCCCAC 62.487 72.222 0.00 0.00 0.00 4.61
192 193 4.125695 AAGCGCTACGACCGACCC 62.126 66.667 12.05 0.00 0.00 4.46
193 194 2.879462 CAAGCGCTACGACCGACC 60.879 66.667 12.05 0.00 0.00 4.79
194 195 3.542742 GCAAGCGCTACGACCGAC 61.543 66.667 12.05 0.00 34.30 4.79
217 502 0.951040 CGCCTCGTTTTGCTTCCTCT 60.951 55.000 0.00 0.00 0.00 3.69
220 505 1.912371 CTCCGCCTCGTTTTGCTTCC 61.912 60.000 0.00 0.00 0.00 3.46
242 527 2.492088 GGTGGGACTAATCAAAACAGCC 59.508 50.000 0.00 0.00 0.00 4.85
244 529 3.684788 CGAGGTGGGACTAATCAAAACAG 59.315 47.826 0.00 0.00 0.00 3.16
245 530 3.670625 CGAGGTGGGACTAATCAAAACA 58.329 45.455 0.00 0.00 0.00 2.83
250 535 0.325296 AGGCGAGGTGGGACTAATCA 60.325 55.000 0.00 0.00 0.00 2.57
281 566 4.787280 CGGCTCCCCACCCTCTCT 62.787 72.222 0.00 0.00 0.00 3.10
289 574 2.900269 TTATGTAGCCCGGCTCCCCA 62.900 60.000 17.40 11.87 40.44 4.96
297 582 1.594293 CCCGCTGTTATGTAGCCCG 60.594 63.158 0.00 0.00 37.90 6.13
304 590 2.749865 CGCACCACCCGCTGTTATG 61.750 63.158 0.00 0.00 0.00 1.90
488 775 7.531857 TGTATTTTGTCCAAATGTACCACAT 57.468 32.000 10.64 0.00 41.31 3.21
492 779 9.301153 GATCATTGTATTTTGTCCAAATGTACC 57.699 33.333 10.64 0.00 35.71 3.34
499 786 8.306038 CCTTCAAGATCATTGTATTTTGTCCAA 58.694 33.333 0.00 0.00 0.00 3.53
512 799 6.208204 CAGAAAAGACACCCTTCAAGATCATT 59.792 38.462 0.00 0.00 33.02 2.57
524 811 3.490933 GCCTTCAAACAGAAAAGACACCC 60.491 47.826 0.00 0.00 35.40 4.61
533 820 0.106268 TGCAGGGCCTTCAAACAGAA 60.106 50.000 1.32 0.00 34.41 3.02
615 2046 0.614415 TAAGCATTGTGGGGGCCTTG 60.614 55.000 0.84 0.00 0.00 3.61
699 2162 8.848474 TGGAACTTTAGAGGTTTTTATCTCAG 57.152 34.615 0.00 0.00 32.76 3.35
765 2251 1.332997 CCGAGAGATGCAATTTCCAGC 59.667 52.381 0.00 0.00 0.00 4.85
766 2252 2.910199 TCCGAGAGATGCAATTTCCAG 58.090 47.619 0.00 0.00 0.00 3.86
794 2281 9.925268 CAAATTCTTTCATTCTTTGGTCTTTTG 57.075 29.630 0.00 0.00 0.00 2.44
985 2477 0.248498 CGCATCTGCAGCAAGGATTG 60.248 55.000 9.47 0.00 45.66 2.67
1254 2746 1.303643 GTGGTGCCAAGGGAGAAGG 60.304 63.158 0.00 0.00 0.00 3.46
1327 2819 1.244352 GCGCCGTAAACATCGAAAAC 58.756 50.000 0.00 0.00 0.00 2.43
1397 2889 4.952957 TGTCATCCAACTCCAAGAAACAAA 59.047 37.500 0.00 0.00 0.00 2.83
1510 3002 2.031012 CCTTCTGAGCGGTGCACA 59.969 61.111 20.43 0.00 0.00 4.57
1641 3133 6.663523 GGGATAGAATGAGAAAGTTCCCAAAA 59.336 38.462 0.00 0.00 41.05 2.44
1673 3166 4.489306 AAGGTAAGCAACTATCTGACCC 57.511 45.455 0.00 0.00 35.97 4.46
1679 3172 6.018994 CACCGATGTTAAGGTAAGCAACTATC 60.019 42.308 0.00 0.00 39.00 2.08
1689 3186 5.394883 GGTTGATCTCACCGATGTTAAGGTA 60.395 44.000 0.00 0.00 39.00 3.08
1941 3438 6.434028 ACACACAACATTGCATTAGACCTATT 59.566 34.615 0.00 0.00 0.00 1.73
1973 3470 4.142359 ACGTTCAGGCTTCATACTAGAGTG 60.142 45.833 0.00 0.00 0.00 3.51
1980 3477 3.617263 CAGGTAACGTTCAGGCTTCATAC 59.383 47.826 2.82 0.00 46.39 2.39
1995 3492 1.479323 TCTGTATGTCGGGCAGGTAAC 59.521 52.381 0.00 0.00 0.00 2.50
2006 3503 3.812053 GCACATCCAGGAATCTGTATGTC 59.188 47.826 0.00 0.00 43.98 3.06
2102 3599 3.499338 TGTGATTGAGGATGGCAAGTTT 58.501 40.909 0.00 0.00 0.00 2.66
2166 3663 8.134202 TCAGGAGTACTAATGATTCAAACTGA 57.866 34.615 0.00 0.00 0.00 3.41
2184 3681 2.894731 TGTCCATGAGAGTTCAGGAGT 58.105 47.619 0.00 0.00 37.29 3.85
2187 3684 2.286872 GCATGTCCATGAGAGTTCAGG 58.713 52.381 11.35 0.00 41.20 3.86
2204 3701 1.561076 TGTAGCTGGAGTGGAATGCAT 59.439 47.619 0.00 0.00 0.00 3.96
2212 3709 4.130118 GGGATAAATGTGTAGCTGGAGTG 58.870 47.826 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.