Multiple sequence alignment - TraesCS2D01G160200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G160200 chr2D 100.000 4029 0 0 675 4703 103126563 103130591 0.000000e+00 7441.0
1 TraesCS2D01G160200 chr2D 100.000 283 0 0 1 283 103125889 103126171 1.500000e-144 523.0
2 TraesCS2D01G160200 chr2D 93.562 233 11 3 4024 4255 102944234 102944005 1.250000e-90 344.0
3 TraesCS2D01G160200 chr2D 84.830 323 26 9 3936 4255 102955291 102954989 2.130000e-78 303.0
4 TraesCS2D01G160200 chr2D 87.938 257 25 5 4024 4277 106265374 106265627 9.890000e-77 298.0
5 TraesCS2D01G160200 chr2B 92.388 3258 175 38 675 3882 154591971 154595205 0.000000e+00 4575.0
6 TraesCS2D01G160200 chr2B 85.000 440 48 12 3869 4296 154595224 154595657 9.350000e-117 431.0
7 TraesCS2D01G160200 chr2B 86.765 340 22 17 4334 4663 154499703 154499377 1.610000e-94 357.0
8 TraesCS2D01G160200 chr2B 86.217 341 23 18 4334 4663 154595950 154596277 9.690000e-92 348.0
9 TraesCS2D01G160200 chr2B 91.057 246 22 0 1 246 154590584 154590829 2.710000e-87 333.0
10 TraesCS2D01G160200 chr2B 91.810 232 18 1 4032 4262 154492060 154491829 5.870000e-84 322.0
11 TraesCS2D01G160200 chr2B 90.987 233 18 3 4024 4255 154490793 154490563 1.270000e-80 311.0
12 TraesCS2D01G160200 chr2B 88.672 256 23 6 4024 4277 154906833 154907084 1.640000e-79 307.0
13 TraesCS2D01G160200 chr2B 88.672 256 24 5 4024 4277 154929989 154930241 1.640000e-79 307.0
14 TraesCS2D01G160200 chr2A 92.608 3179 141 41 714 3845 102129897 102133028 0.000000e+00 4482.0
15 TraesCS2D01G160200 chr2A 88.949 371 26 4 4292 4660 102291815 102292172 1.200000e-120 444.0
16 TraesCS2D01G160200 chr2A 85.100 349 38 14 3936 4277 102043764 102043423 1.250000e-90 344.0
17 TraesCS2D01G160200 chr2A 90.909 165 11 3 4400 4564 102138617 102138777 7.920000e-53 219.0
18 TraesCS2D01G160200 chr2A 90.099 101 9 1 4291 4391 102137995 102138094 3.820000e-26 130.0
19 TraesCS2D01G160200 chr1B 83.178 321 50 4 3936 4255 17391821 17392138 1.660000e-74 291.0
20 TraesCS2D01G160200 chrUn 86.829 205 14 10 4469 4663 477607996 477607795 2.850000e-52 217.0
21 TraesCS2D01G160200 chr1D 87.879 66 8 0 2008 2073 473661024 473660959 1.400000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G160200 chr2D 103125889 103130591 4702 False 3982.00 7441 100.0000 1 4703 2 chr2D.!!$F2 4702
1 TraesCS2D01G160200 chr2B 154590584 154596277 5693 False 1421.75 4575 88.6655 1 4663 4 chr2B.!!$F3 4662
2 TraesCS2D01G160200 chr2B 154490563 154492060 1497 True 316.50 322 91.3985 4024 4262 2 chr2B.!!$R2 238
3 TraesCS2D01G160200 chr2A 102129897 102133028 3131 False 4482.00 4482 92.6080 714 3845 1 chr2A.!!$F1 3131

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
255 256 0.253610 CCTAAATGTACACGGGCCCA 59.746 55.000 24.92 0.0 0.00 5.36 F
268 269 0.396060 GGGCCCAAAGCAAAATGACA 59.604 50.000 19.95 0.0 46.50 3.58 F
963 1713 1.152798 ATCCCGGTCTACTCGGTCC 60.153 63.158 0.00 0.0 45.51 4.46 F
1963 2757 1.215382 CGCTGAACAGATCGACCCA 59.785 57.895 5.97 0.0 0.00 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1972 2766 0.034896 AGTGAAGGTTGTGGCCGTAG 59.965 55.000 0.00 0.0 0.00 3.51 R
2148 2945 1.136305 CCGATGTCGAGCCTAAGGAAA 59.864 52.381 3.62 0.0 43.02 3.13 R
2152 2949 1.265635 CTCTCCGATGTCGAGCCTAAG 59.734 57.143 3.62 0.0 43.02 2.18 R
3713 4523 0.179070 GCATCTCTCGGAAGGGGAAC 60.179 60.000 0.00 0.0 0.00 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 4.648762 TGAAAATCCTGCAAAACAAGGAGA 59.351 37.500 0.00 0.00 31.70 3.71
61 62 2.727123 TCCTGCAAAACAAGGAGACA 57.273 45.000 0.00 0.00 0.00 3.41
76 77 6.043243 ACAAGGAGACACTAATTTCTCAAGGA 59.957 38.462 7.09 0.00 40.17 3.36
77 78 6.688073 AGGAGACACTAATTTCTCAAGGAA 57.312 37.500 7.09 0.00 40.17 3.36
81 82 7.772757 GGAGACACTAATTTCTCAAGGAATCAT 59.227 37.037 7.09 0.00 40.17 2.45
84 85 8.503458 ACACTAATTTCTCAAGGAATCATGAG 57.497 34.615 0.09 8.45 43.51 2.90
153 154 9.754382 AGAAATAAACATGTCAATATTCCATGC 57.246 29.630 18.24 6.41 39.62 4.06
159 160 8.922931 AACATGTCAATATTCCATGCAGTATA 57.077 30.769 18.24 0.00 39.62 1.47
163 164 8.744568 TGTCAATATTCCATGCAGTATACAAA 57.255 30.769 5.50 0.00 0.00 2.83
179 180 6.767902 AGTATACAAATCTATGGGTGTTGCAG 59.232 38.462 5.50 0.00 0.00 4.41
220 221 8.881743 TGTTTTTCTTTTCCAAATTGTCATCAG 58.118 29.630 0.00 0.00 0.00 2.90
233 234 4.478206 TGTCATCAGAAGACAGAATCCC 57.522 45.455 4.31 0.00 40.80 3.85
247 248 4.538490 ACAGAATCCCCACCTAAATGTACA 59.462 41.667 0.00 0.00 0.00 2.90
251 252 1.407712 CCCCACCTAAATGTACACGGG 60.408 57.143 0.00 0.56 0.00 5.28
252 253 1.375551 CCACCTAAATGTACACGGGC 58.624 55.000 0.00 0.00 0.00 6.13
255 256 0.253610 CCTAAATGTACACGGGCCCA 59.746 55.000 24.92 0.00 0.00 5.36
256 257 1.340211 CCTAAATGTACACGGGCCCAA 60.340 52.381 24.92 0.00 0.00 4.12
257 258 2.438411 CTAAATGTACACGGGCCCAAA 58.562 47.619 24.92 0.00 0.00 3.28
258 259 1.253100 AAATGTACACGGGCCCAAAG 58.747 50.000 24.92 13.37 0.00 2.77
260 261 2.281900 GTACACGGGCCCAAAGCA 60.282 61.111 24.92 0.00 46.50 3.91
261 262 1.899534 GTACACGGGCCCAAAGCAA 60.900 57.895 24.92 0.00 46.50 3.91
262 263 1.152735 TACACGGGCCCAAAGCAAA 60.153 52.632 24.92 0.00 46.50 3.68
264 265 1.370810 CACGGGCCCAAAGCAAAAT 59.629 52.632 24.92 0.00 46.50 1.82
265 266 0.950071 CACGGGCCCAAAGCAAAATG 60.950 55.000 24.92 3.12 46.50 2.32
267 268 0.670239 CGGGCCCAAAGCAAAATGAC 60.670 55.000 24.92 0.00 46.50 3.06
268 269 0.396060 GGGCCCAAAGCAAAATGACA 59.604 50.000 19.95 0.00 46.50 3.58
270 271 1.872952 GGCCCAAAGCAAAATGACAAC 59.127 47.619 0.00 0.00 46.50 3.32
271 272 2.559440 GCCCAAAGCAAAATGACAACA 58.441 42.857 0.00 0.00 42.97 3.33
272 273 3.140623 GCCCAAAGCAAAATGACAACAT 58.859 40.909 0.00 0.00 42.97 2.71
276 277 6.072563 GCCCAAAGCAAAATGACAACATAAAT 60.073 34.615 0.00 0.00 42.97 1.40
277 278 7.118971 GCCCAAAGCAAAATGACAACATAAATA 59.881 33.333 0.00 0.00 42.97 1.40
804 1528 3.760035 GCTTCCCGTCAGCCGAGA 61.760 66.667 0.00 0.00 39.56 4.04
963 1713 1.152798 ATCCCGGTCTACTCGGTCC 60.153 63.158 0.00 0.00 45.51 4.46
966 1716 2.413142 CCGGTCTACTCGGTCCACC 61.413 68.421 0.00 0.00 42.33 4.61
1052 1802 6.017109 CCAAGAAATACATACATACCACAGCC 60.017 42.308 0.00 0.00 0.00 4.85
1359 2152 3.781307 CCAAGATCCCCGTCGCCA 61.781 66.667 0.00 0.00 0.00 5.69
1360 2153 2.511600 CAAGATCCCCGTCGCCAC 60.512 66.667 0.00 0.00 0.00 5.01
1361 2154 4.143333 AAGATCCCCGTCGCCACG 62.143 66.667 0.00 0.00 46.29 4.94
1735 2529 4.573900 TCAGTCAGCTCTTCAAGAAATCC 58.426 43.478 0.00 0.00 0.00 3.01
1769 2563 4.002982 TCTCCATTCGTGAAATTGGACTG 58.997 43.478 1.67 0.00 0.00 3.51
1873 2667 5.023533 AGCTGTGAGTACTTTTGTCAGAA 57.976 39.130 0.00 0.00 0.00 3.02
1896 2690 6.551385 AGAAACTGCAGAATGTTCAGTTAG 57.449 37.500 23.35 0.00 44.78 2.34
1945 2739 4.438472 GCTCATGTCTCTGCTGAAATTTCC 60.438 45.833 15.48 1.80 0.00 3.13
1947 2741 1.806542 TGTCTCTGCTGAAATTTCCGC 59.193 47.619 23.14 23.14 37.83 5.54
1963 2757 1.215382 CGCTGAACAGATCGACCCA 59.785 57.895 5.97 0.00 0.00 4.51
2099 2893 4.340950 TGGAATTTCTGAACCTTTGGTCAC 59.659 41.667 0.00 0.00 33.12 3.67
2104 2898 4.371624 TCTGAACCTTTGGTCACATCAT 57.628 40.909 0.00 0.00 33.12 2.45
2148 2945 7.050377 CCTTATAGACTGATCACCATGTTTGT 58.950 38.462 0.00 0.00 0.00 2.83
2152 2949 4.520492 AGACTGATCACCATGTTTGTTTCC 59.480 41.667 0.00 0.00 0.00 3.13
2251 3048 4.621991 CATCAAGTATCTTGGTCCGGTAG 58.378 47.826 0.00 0.00 0.00 3.18
2254 3051 2.385803 AGTATCTTGGTCCGGTAGGTG 58.614 52.381 0.00 0.00 39.05 4.00
2284 3084 8.389603 GCAAACATTTTACATGGGATAAATGTG 58.610 33.333 20.42 14.24 45.42 3.21
2295 3095 4.130118 GGGATAAATGTGTAGCTGGAGTG 58.870 47.826 0.00 0.00 0.00 3.51
2303 3103 1.561076 TGTAGCTGGAGTGGAATGCAT 59.439 47.619 0.00 0.00 0.00 3.96
2320 3120 2.286872 GCATGTCCATGAGAGTTCAGG 58.713 52.381 11.35 0.00 41.20 3.86
2323 3123 2.894731 TGTCCATGAGAGTTCAGGAGT 58.105 47.619 0.00 0.00 37.29 3.85
2341 3141 8.134202 TCAGGAGTACTAATGATTCAAACTGA 57.866 34.615 0.00 0.00 0.00 3.41
2405 3205 3.499338 TGTGATTGAGGATGGCAAGTTT 58.501 40.909 0.00 0.00 0.00 2.66
2501 3301 3.812053 GCACATCCAGGAATCTGTATGTC 59.188 47.826 0.00 0.00 43.98 3.06
2512 3312 1.479323 TCTGTATGTCGGGCAGGTAAC 59.521 52.381 0.00 0.00 0.00 2.50
2527 3327 3.617263 CAGGTAACGTTCAGGCTTCATAC 59.383 47.826 2.82 0.00 46.39 2.39
2534 3334 4.142359 ACGTTCAGGCTTCATACTAGAGTG 60.142 45.833 0.00 0.00 0.00 3.51
2566 3366 6.434028 ACACACAACATTGCATTAGACCTATT 59.566 34.615 0.00 0.00 0.00 1.73
2818 3618 5.394883 GGTTGATCTCACCGATGTTAAGGTA 60.395 44.000 0.00 0.00 39.00 3.08
2828 3628 6.018994 CACCGATGTTAAGGTAAGCAACTATC 60.019 42.308 0.00 0.00 39.00 2.08
2834 3638 4.489306 AAGGTAAGCAACTATCTGACCC 57.511 45.455 0.00 0.00 35.97 4.46
2866 3671 6.663523 GGGATAGAATGAGAAAGTTCCCAAAA 59.336 38.462 0.00 0.00 41.05 2.44
2997 3802 2.031012 CCTTCTGAGCGGTGCACA 59.969 61.111 20.43 0.00 0.00 4.57
3110 3915 4.952957 TGTCATCCAACTCCAAGAAACAAA 59.047 37.500 0.00 0.00 0.00 2.83
3180 3985 1.244352 GCGCCGTAAACATCGAAAAC 58.756 50.000 0.00 0.00 0.00 2.43
3253 4058 1.303643 GTGGTGCCAAGGGAGAAGG 60.304 63.158 0.00 0.00 0.00 3.46
3522 4327 0.248498 CGCATCTGCAGCAAGGATTG 60.248 55.000 9.47 0.00 45.66 2.67
3713 4523 9.925268 CAAATTCTTTCATTCTTTGGTCTTTTG 57.075 29.630 0.00 0.00 0.00 2.44
3741 4552 2.910199 TCCGAGAGATGCAATTTCCAG 58.090 47.619 0.00 0.00 0.00 3.86
3742 4553 1.332997 CCGAGAGATGCAATTTCCAGC 59.667 52.381 0.00 0.00 0.00 4.85
3808 4642 8.848474 TGGAACTTTAGAGGTTTTTATCTCAG 57.152 34.615 0.00 0.00 32.76 3.35
3892 4758 0.614415 TAAGCATTGTGGGGGCCTTG 60.614 55.000 0.84 0.00 0.00 3.61
3905 4771 1.072331 GGGCCTTGTTCTCACAGAGAA 59.928 52.381 0.84 5.41 45.01 2.87
3950 4823 9.109533 GCAAATGCTACAAATTTTGAAATTCAG 57.890 29.630 15.81 4.38 36.51 3.02
3974 4847 0.106268 TGCAGGGCCTTCAAACAGAA 60.106 50.000 1.32 0.00 34.41 3.02
3978 4851 2.958355 CAGGGCCTTCAAACAGAAAAGA 59.042 45.455 1.32 0.00 35.40 2.52
3981 4854 3.490933 GGGCCTTCAAACAGAAAAGACAC 60.491 47.826 0.84 0.00 35.40 3.67
3983 4856 3.490933 GCCTTCAAACAGAAAAGACACCC 60.491 47.826 0.00 0.00 35.40 4.61
3995 4868 6.208204 CAGAAAAGACACCCTTCAAGATCATT 59.792 38.462 0.00 0.00 33.02 2.57
4008 4881 8.306038 CCTTCAAGATCATTGTATTTTGTCCAA 58.694 33.333 0.00 0.00 0.00 3.53
4015 4888 9.301153 GATCATTGTATTTTGTCCAAATGTACC 57.699 33.333 10.64 0.00 35.71 3.34
4018 4891 6.961360 TGTATTTTGTCCAAATGTACCACA 57.039 33.333 10.64 0.00 35.71 4.17
4019 4892 7.531857 TGTATTTTGTCCAAATGTACCACAT 57.468 32.000 10.64 0.00 41.31 3.21
4203 5077 2.749865 CGCACCACCCGCTGTTATG 61.750 63.158 0.00 0.00 0.00 1.90
4210 5084 1.594293 CCCGCTGTTATGTAGCCCG 60.594 63.158 0.00 0.00 37.90 6.13
4211 5085 1.594293 CCGCTGTTATGTAGCCCGG 60.594 63.158 0.00 0.00 37.90 5.73
4218 5092 2.900269 TTATGTAGCCCGGCTCCCCA 62.900 60.000 17.40 11.87 40.44 4.96
4226 5100 4.787280 CGGCTCCCCACCCTCTCT 62.787 72.222 0.00 0.00 0.00 3.10
4257 5131 0.325296 AGGCGAGGTGGGACTAATCA 60.325 55.000 0.00 0.00 0.00 2.57
4262 5136 3.670625 CGAGGTGGGACTAATCAAAACA 58.329 45.455 0.00 0.00 0.00 2.83
4263 5137 3.684788 CGAGGTGGGACTAATCAAAACAG 59.315 47.826 0.00 0.00 0.00 3.16
4265 5139 2.492088 GGTGGGACTAATCAAAACAGCC 59.508 50.000 0.00 0.00 0.00 4.85
4287 5161 1.912371 CTCCGCCTCGTTTTGCTTCC 61.912 60.000 0.00 0.00 0.00 3.46
4290 5164 0.951040 CGCCTCGTTTTGCTTCCTCT 60.951 55.000 0.00 0.00 0.00 3.69
4296 5170 0.386478 GTTTTGCTTCCTCTGCTGCG 60.386 55.000 0.00 0.00 0.00 5.18
4297 5171 2.133742 TTTTGCTTCCTCTGCTGCGC 62.134 55.000 0.00 0.00 0.00 6.09
4298 5172 3.830464 TTGCTTCCTCTGCTGCGCA 62.830 57.895 10.98 10.98 36.92 6.09
4299 5173 3.052082 GCTTCCTCTGCTGCGCAA 61.052 61.111 13.05 0.00 38.41 4.85
4300 5174 3.036783 GCTTCCTCTGCTGCGCAAG 62.037 63.158 13.05 7.24 38.41 4.01
4313 5187 3.542742 GCAAGCGCTACGACCGAC 61.543 66.667 12.05 0.00 34.30 4.79
4314 5188 2.879462 CAAGCGCTACGACCGACC 60.879 66.667 12.05 0.00 0.00 4.79
4315 5189 4.125695 AAGCGCTACGACCGACCC 62.126 66.667 12.05 0.00 0.00 4.46
4318 5192 4.487412 CGCTACGACCGACCCCAC 62.487 72.222 0.00 0.00 0.00 4.61
4319 5193 3.376078 GCTACGACCGACCCCACA 61.376 66.667 0.00 0.00 0.00 4.17
4320 5194 2.882876 CTACGACCGACCCCACAG 59.117 66.667 0.00 0.00 0.00 3.66
4324 5198 4.394712 GACCGACCCCACAGCCAG 62.395 72.222 0.00 0.00 0.00 4.85
4325 5199 4.954118 ACCGACCCCACAGCCAGA 62.954 66.667 0.00 0.00 0.00 3.86
4326 5200 4.087892 CCGACCCCACAGCCAGAG 62.088 72.222 0.00 0.00 0.00 3.35
4328 5202 2.665603 GACCCCACAGCCAGAGAC 59.334 66.667 0.00 0.00 0.00 3.36
4329 5203 2.122413 ACCCCACAGCCAGAGACA 60.122 61.111 0.00 0.00 0.00 3.41
4330 5204 2.177594 GACCCCACAGCCAGAGACAG 62.178 65.000 0.00 0.00 0.00 3.51
4331 5205 1.915266 CCCCACAGCCAGAGACAGA 60.915 63.158 0.00 0.00 0.00 3.41
4332 5206 1.483595 CCCCACAGCCAGAGACAGAA 61.484 60.000 0.00 0.00 0.00 3.02
4333 5207 0.617413 CCCACAGCCAGAGACAGAAT 59.383 55.000 0.00 0.00 0.00 2.40
4334 5208 1.004044 CCCACAGCCAGAGACAGAATT 59.996 52.381 0.00 0.00 0.00 2.17
4335 5209 2.354259 CCACAGCCAGAGACAGAATTC 58.646 52.381 0.00 0.00 0.00 2.17
4337 5211 3.405831 CACAGCCAGAGACAGAATTCAA 58.594 45.455 8.44 0.00 0.00 2.69
4338 5212 3.817084 CACAGCCAGAGACAGAATTCAAA 59.183 43.478 8.44 0.00 0.00 2.69
4340 5214 3.817084 CAGCCAGAGACAGAATTCAAACA 59.183 43.478 8.44 0.00 0.00 2.83
4341 5215 4.070716 AGCCAGAGACAGAATTCAAACAG 58.929 43.478 8.44 0.00 0.00 3.16
4342 5216 3.365767 GCCAGAGACAGAATTCAAACAGC 60.366 47.826 8.44 0.00 0.00 4.40
4376 5506 1.131883 CAGTTCATGCAGGTGCTTAGC 59.868 52.381 3.18 0.00 42.66 3.09
4377 5507 1.004044 AGTTCATGCAGGTGCTTAGCT 59.996 47.619 5.60 0.00 42.66 3.32
4378 5508 1.815003 GTTCATGCAGGTGCTTAGCTT 59.185 47.619 5.60 0.00 42.66 3.74
4379 5509 3.009723 GTTCATGCAGGTGCTTAGCTTA 58.990 45.455 5.60 0.00 42.66 3.09
4380 5510 2.910199 TCATGCAGGTGCTTAGCTTAG 58.090 47.619 5.60 0.00 42.66 2.18
4381 5511 1.332997 CATGCAGGTGCTTAGCTTAGC 59.667 52.381 17.65 17.65 42.66 3.09
4382 5512 0.615331 TGCAGGTGCTTAGCTTAGCT 59.385 50.000 23.89 12.67 41.76 3.32
4383 5513 1.003580 TGCAGGTGCTTAGCTTAGCTT 59.996 47.619 23.89 8.42 41.76 3.74
4384 5514 2.236146 TGCAGGTGCTTAGCTTAGCTTA 59.764 45.455 23.89 1.51 41.76 3.09
4467 5597 3.365364 CGTTGAGAAAAGATTCCCAGTGC 60.365 47.826 0.00 0.00 36.12 4.40
4477 5607 2.163818 TTCCCAGTGCGTAGACTTTG 57.836 50.000 0.00 0.00 0.00 2.77
4481 5611 1.067142 CCAGTGCGTAGACTTTGGCTA 60.067 52.381 0.00 0.00 0.00 3.93
4483 5613 1.616865 AGTGCGTAGACTTTGGCTACA 59.383 47.619 10.68 0.00 38.46 2.74
4484 5614 1.725164 GTGCGTAGACTTTGGCTACAC 59.275 52.381 10.68 2.06 38.46 2.90
4485 5615 0.989890 GCGTAGACTTTGGCTACACG 59.010 55.000 10.68 1.96 38.46 4.49
4500 5630 5.161358 GGCTACACGATGATTATTCGATCA 58.839 41.667 0.00 0.00 40.11 2.92
4515 5645 8.920509 TTATTCGATCAGTTTAATTCTGACGA 57.079 30.769 18.87 18.87 43.32 4.20
4557 5687 7.822161 AATGACCTAAGCAATTGCACATATA 57.178 32.000 30.89 14.44 45.16 0.86
4600 5739 2.032030 CGTTAAGCCATTATCAAGCCCG 60.032 50.000 0.00 0.00 0.00 6.13
4657 5797 2.224079 TCTGAAATGTTGTTCGCTGAGC 59.776 45.455 0.00 0.00 0.00 4.26
4663 5803 1.079503 GTTGTTCGCTGAGCTTAGGG 58.920 55.000 15.54 15.54 0.00 3.53
4664 5804 0.673644 TTGTTCGCTGAGCTTAGGGC 60.674 55.000 16.69 5.61 42.19 5.19
4665 5805 1.079127 GTTCGCTGAGCTTAGGGCA 60.079 57.895 16.69 4.23 44.79 5.36
4666 5806 0.462759 GTTCGCTGAGCTTAGGGCAT 60.463 55.000 16.69 0.00 44.79 4.40
4667 5807 0.253044 TTCGCTGAGCTTAGGGCATT 59.747 50.000 16.69 0.00 44.79 3.56
4668 5808 0.253044 TCGCTGAGCTTAGGGCATTT 59.747 50.000 16.69 0.00 44.79 2.32
4669 5809 0.659957 CGCTGAGCTTAGGGCATTTC 59.340 55.000 9.67 0.00 44.79 2.17
4670 5810 1.028130 GCTGAGCTTAGGGCATTTCC 58.972 55.000 7.72 0.00 44.79 3.13
4671 5811 1.683011 GCTGAGCTTAGGGCATTTCCA 60.683 52.381 7.72 0.00 44.79 3.53
4672 5812 2.726821 CTGAGCTTAGGGCATTTCCAA 58.273 47.619 0.00 0.00 44.79 3.53
4673 5813 2.424956 CTGAGCTTAGGGCATTTCCAAC 59.575 50.000 0.00 0.00 44.79 3.77
4674 5814 1.401905 GAGCTTAGGGCATTTCCAACG 59.598 52.381 0.00 0.00 44.79 4.10
4675 5815 0.179137 GCTTAGGGCATTTCCAACGC 60.179 55.000 0.00 0.00 41.35 4.84
4676 5816 0.455815 CTTAGGGCATTTCCAACGCC 59.544 55.000 0.00 0.00 45.47 5.68
4679 5819 2.178273 GGCATTTCCAACGCCGAC 59.822 61.111 0.00 0.00 35.79 4.79
4680 5820 2.178273 GCATTTCCAACGCCGACC 59.822 61.111 0.00 0.00 0.00 4.79
4681 5821 2.874751 CATTTCCAACGCCGACCC 59.125 61.111 0.00 0.00 0.00 4.46
4682 5822 1.969064 CATTTCCAACGCCGACCCA 60.969 57.895 0.00 0.00 0.00 4.51
4683 5823 1.001393 ATTTCCAACGCCGACCCAT 60.001 52.632 0.00 0.00 0.00 4.00
4684 5824 0.253610 ATTTCCAACGCCGACCCATA 59.746 50.000 0.00 0.00 0.00 2.74
4685 5825 0.036448 TTTCCAACGCCGACCCATAA 59.964 50.000 0.00 0.00 0.00 1.90
4686 5826 0.036448 TTCCAACGCCGACCCATAAA 59.964 50.000 0.00 0.00 0.00 1.40
4687 5827 0.674269 TCCAACGCCGACCCATAAAC 60.674 55.000 0.00 0.00 0.00 2.01
4688 5828 1.650314 CCAACGCCGACCCATAAACC 61.650 60.000 0.00 0.00 0.00 3.27
4689 5829 1.742510 AACGCCGACCCATAAACCG 60.743 57.895 0.00 0.00 0.00 4.44
4690 5830 3.569690 CGCCGACCCATAAACCGC 61.570 66.667 0.00 0.00 0.00 5.68
4691 5831 3.206957 GCCGACCCATAAACCGCC 61.207 66.667 0.00 0.00 0.00 6.13
4692 5832 2.587889 CCGACCCATAAACCGCCT 59.412 61.111 0.00 0.00 0.00 5.52
4693 5833 1.817941 CCGACCCATAAACCGCCTG 60.818 63.158 0.00 0.00 0.00 4.85
4694 5834 2.469516 CGACCCATAAACCGCCTGC 61.470 63.158 0.00 0.00 0.00 4.85
4695 5835 2.437716 ACCCATAAACCGCCTGCG 60.438 61.111 4.20 4.20 39.44 5.18
4696 5836 2.437716 CCCATAAACCGCCTGCGT 60.438 61.111 10.94 0.00 37.81 5.24
4697 5837 2.043980 CCCATAAACCGCCTGCGTT 61.044 57.895 10.94 1.80 37.81 4.84
4698 5838 1.136565 CCATAAACCGCCTGCGTTG 59.863 57.895 10.94 0.00 37.81 4.10
4699 5839 1.582610 CCATAAACCGCCTGCGTTGT 61.583 55.000 10.94 0.00 37.81 3.32
4700 5840 1.080298 CATAAACCGCCTGCGTTGTA 58.920 50.000 10.94 0.00 37.81 2.41
4701 5841 1.465387 CATAAACCGCCTGCGTTGTAA 59.535 47.619 10.94 0.00 37.81 2.41
4702 5842 0.867086 TAAACCGCCTGCGTTGTAAC 59.133 50.000 10.94 0.00 37.81 2.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 6.827762 TCCTTGTTTTGCAGGATTTTCAAAAT 59.172 30.769 0.00 0.00 40.42 1.82
59 60 7.555554 CCTCATGATTCCTTGAGAAATTAGTGT 59.444 37.037 12.79 0.00 43.42 3.55
61 62 6.545298 GCCTCATGATTCCTTGAGAAATTAGT 59.455 38.462 12.79 0.00 43.42 2.24
76 77 7.123098 TGTGAAACTATTGAATGCCTCATGATT 59.877 33.333 0.00 0.00 38.04 2.57
77 78 6.604396 TGTGAAACTATTGAATGCCTCATGAT 59.396 34.615 0.00 0.00 38.04 2.45
81 82 7.828717 TCTTATGTGAAACTATTGAATGCCTCA 59.171 33.333 0.00 0.00 38.04 3.86
84 85 8.462016 ACTTCTTATGTGAAACTATTGAATGCC 58.538 33.333 0.00 0.00 38.04 4.40
136 137 8.326680 TGTATACTGCATGGAATATTGACATG 57.673 34.615 18.65 18.65 43.58 3.21
145 146 7.613022 CCCATAGATTTGTATACTGCATGGAAT 59.387 37.037 4.17 0.00 33.73 3.01
150 151 6.841601 ACACCCATAGATTTGTATACTGCAT 58.158 36.000 4.17 0.00 0.00 3.96
153 154 6.542005 TGCAACACCCATAGATTTGTATACTG 59.458 38.462 4.17 0.00 0.00 2.74
159 160 3.766545 ACTGCAACACCCATAGATTTGT 58.233 40.909 0.00 0.00 0.00 2.83
163 164 4.889409 CCATAAACTGCAACACCCATAGAT 59.111 41.667 0.00 0.00 0.00 1.98
217 218 1.909302 GGTGGGGATTCTGTCTTCTGA 59.091 52.381 0.00 0.00 0.00 3.27
220 221 4.569719 TTTAGGTGGGGATTCTGTCTTC 57.430 45.455 0.00 0.00 0.00 2.87
233 234 1.375551 GCCCGTGTACATTTAGGTGG 58.624 55.000 0.00 0.00 0.00 4.61
247 248 1.118356 TCATTTTGCTTTGGGCCCGT 61.118 50.000 19.37 0.00 40.92 5.28
251 252 2.559440 TGTTGTCATTTTGCTTTGGGC 58.441 42.857 0.00 0.00 42.22 5.36
252 253 6.857777 TTTATGTTGTCATTTTGCTTTGGG 57.142 33.333 0.00 0.00 35.70 4.12
732 1448 1.368950 GCCTGACTGACTGACTGCA 59.631 57.895 0.00 0.00 0.00 4.41
800 1524 1.135731 GCTGACCTGTCTCGTCTCG 59.864 63.158 0.00 0.00 0.00 4.04
801 1525 0.109504 GTGCTGACCTGTCTCGTCTC 60.110 60.000 0.00 0.00 0.00 3.36
802 1526 1.857318 CGTGCTGACCTGTCTCGTCT 61.857 60.000 0.00 0.00 0.00 4.18
803 1527 1.442857 CGTGCTGACCTGTCTCGTC 60.443 63.158 0.00 0.00 0.00 4.20
804 1528 2.645567 CGTGCTGACCTGTCTCGT 59.354 61.111 0.00 0.00 0.00 4.18
963 1713 1.472728 GGCGAATATATAGCGGGGGTG 60.473 57.143 9.19 0.00 0.00 4.61
966 1716 0.828022 TGGGCGAATATATAGCGGGG 59.172 55.000 9.19 0.00 0.00 5.73
1052 1802 0.681564 ACCGGAGAGAGTGCAGTAGG 60.682 60.000 9.46 0.00 0.00 3.18
1114 1864 1.787847 GTGCCGATCCTGTTTGACG 59.212 57.895 0.00 0.00 0.00 4.35
1145 1895 2.539338 GCGCAACAACCGAACCTCA 61.539 57.895 0.30 0.00 0.00 3.86
1248 2011 3.782244 GAACGTCGCCTGCTGCTG 61.782 66.667 0.00 0.00 38.05 4.41
1719 2513 3.843027 TCAGAGGGATTTCTTGAAGAGCT 59.157 43.478 0.00 0.00 0.00 4.09
1735 2529 2.780714 GAATGGAGATGGCATCAGAGG 58.219 52.381 27.93 0.00 0.00 3.69
1769 2563 6.538742 TCCGACCTGAAATCAGATTAATTGTC 59.461 38.462 11.94 7.59 46.59 3.18
1777 2571 3.370953 CCCTTTCCGACCTGAAATCAGAT 60.371 47.826 11.94 0.00 46.59 2.90
1779 2573 2.359900 CCCTTTCCGACCTGAAATCAG 58.640 52.381 3.37 3.37 43.40 2.90
1896 2690 2.485814 TGCTTGGCAAAAACACCAAAAC 59.514 40.909 0.00 0.00 45.03 2.43
1945 2739 1.078759 GTGGGTCGATCTGTTCAGCG 61.079 60.000 0.00 0.00 0.00 5.18
1947 2741 0.526211 TCGTGGGTCGATCTGTTCAG 59.474 55.000 0.00 0.00 44.01 3.02
1972 2766 0.034896 AGTGAAGGTTGTGGCCGTAG 59.965 55.000 0.00 0.00 0.00 3.51
2068 2862 4.901250 AGGTTCAGAAATTCCAACAACCAT 59.099 37.500 12.53 0.69 35.28 3.55
2129 2923 4.520492 GGAAACAAACATGGTGATCAGTCT 59.480 41.667 0.00 0.00 0.00 3.24
2148 2945 1.136305 CCGATGTCGAGCCTAAGGAAA 59.864 52.381 3.62 0.00 43.02 3.13
2152 2949 1.265635 CTCTCCGATGTCGAGCCTAAG 59.734 57.143 3.62 0.00 43.02 2.18
2254 3051 6.799926 ATCCCATGTAAAATGTTTGCAAAC 57.200 33.333 30.95 30.95 39.33 2.93
2284 3084 1.945394 CATGCATTCCACTCCAGCTAC 59.055 52.381 0.00 0.00 0.00 3.58
2295 3095 2.928334 ACTCTCATGGACATGCATTCC 58.072 47.619 16.52 16.52 38.65 3.01
2303 3103 2.894731 ACTCCTGAACTCTCATGGACA 58.105 47.619 0.00 0.00 30.42 4.02
2341 3141 3.540314 TCTGCAGGCACAACAAAAATT 57.460 38.095 15.13 0.00 0.00 1.82
2405 3205 3.694043 TGCCTGCTGTTCTTGTACATA 57.306 42.857 0.00 0.00 0.00 2.29
2501 3301 1.740296 CCTGAACGTTACCTGCCCG 60.740 63.158 0.00 0.00 0.00 6.13
2512 3312 4.355437 CACTCTAGTATGAAGCCTGAACG 58.645 47.826 0.00 0.00 0.00 3.95
2527 3327 5.230182 TGTTGTGTGTTGATAGCACTCTAG 58.770 41.667 0.00 0.00 37.70 2.43
2534 3334 3.899734 TGCAATGTTGTGTGTTGATAGC 58.100 40.909 0.00 0.00 0.00 2.97
2580 3380 8.734386 GTTTTGGACAAAGTTAGATGATGATCT 58.266 33.333 0.00 0.00 42.03 2.75
2805 3605 6.201044 CAGATAGTTGCTTACCTTAACATCGG 59.799 42.308 0.00 0.00 0.00 4.18
2818 3618 4.785346 ATCATGGGTCAGATAGTTGCTT 57.215 40.909 0.00 0.00 0.00 3.91
2834 3638 8.461249 AACTTTCTCATTCTATCCCAATCATG 57.539 34.615 0.00 0.00 0.00 3.07
2866 3671 8.593945 ATTGGATAACTTTATTGTCACCACAT 57.406 30.769 0.00 0.00 30.55 3.21
2921 3726 1.822990 CAGTTGGGCTCATCTGCAATT 59.177 47.619 11.63 0.00 34.96 2.32
2997 3802 0.673644 CTTCGGGTTTGTCGGCATCT 60.674 55.000 0.00 0.00 0.00 2.90
3110 3915 2.238646 TCCGGTTGGCTATGATCTTTGT 59.761 45.455 0.00 0.00 34.14 2.83
3180 3985 2.507484 TCAGGCATGGAAGTTGTTGAG 58.493 47.619 0.00 0.00 0.00 3.02
3253 4058 1.351017 TGAGTTGACCCTCCCAATGAC 59.649 52.381 0.00 0.00 0.00 3.06
3321 4126 2.828549 ACGCAAATGATCCGGGGC 60.829 61.111 0.00 0.00 0.00 5.80
3522 4327 5.557893 GCTCGTTCATCATAAACTGATCAGC 60.558 44.000 22.83 0.00 42.91 4.26
3713 4523 0.179070 GCATCTCTCGGAAGGGGAAC 60.179 60.000 0.00 0.00 0.00 3.62
3741 4552 5.334957 GCCTTAAAACTCCAAGTTCTGTAGC 60.335 44.000 0.00 0.00 37.47 3.58
3742 4553 5.763204 TGCCTTAAAACTCCAAGTTCTGTAG 59.237 40.000 0.00 0.00 37.47 2.74
3808 4642 1.620323 AGTTTTGGCTGGGCATTTCTC 59.380 47.619 0.00 0.00 0.00 2.87
3868 4702 2.026356 GGCCCCCACAATGCTTAATTTT 60.026 45.455 0.00 0.00 0.00 1.82
3877 4743 0.542702 AGAACAAGGCCCCCACAATG 60.543 55.000 0.00 0.00 0.00 2.82
3884 4750 0.322008 CTCTGTGAGAACAAGGCCCC 60.322 60.000 0.00 0.00 0.00 5.80
3892 4758 1.609320 GGGTGCCTTCTCTGTGAGAAC 60.609 57.143 5.97 0.00 42.78 3.01
3905 4771 3.238597 TGCTAATTTTTGAAGGGTGCCT 58.761 40.909 0.00 0.00 33.87 4.75
3906 4772 3.676291 TGCTAATTTTTGAAGGGTGCC 57.324 42.857 0.00 0.00 0.00 5.01
3907 4773 5.617529 GCATTTGCTAATTTTTGAAGGGTGC 60.618 40.000 0.00 0.00 38.21 5.01
3933 4806 9.724839 CTGCAAATTCTGAATTTCAAAATTTGT 57.275 25.926 31.70 12.04 38.97 2.83
3937 4810 6.072342 GCCCTGCAAATTCTGAATTTCAAAAT 60.072 34.615 22.00 1.70 38.97 1.82
3949 4822 2.014010 TTGAAGGCCCTGCAAATTCT 57.986 45.000 0.11 0.00 0.00 2.40
3950 4823 2.224257 TGTTTGAAGGCCCTGCAAATTC 60.224 45.455 19.90 8.84 40.59 2.17
3974 4847 5.388654 ACAATGATCTTGAAGGGTGTCTTT 58.611 37.500 10.61 0.00 35.50 2.52
3978 4851 7.233348 ACAAAATACAATGATCTTGAAGGGTGT 59.767 33.333 10.61 0.73 0.00 4.16
3981 4854 7.093814 TGGACAAAATACAATGATCTTGAAGGG 60.094 37.037 10.61 1.08 0.00 3.95
3983 4856 9.695526 TTTGGACAAAATACAATGATCTTGAAG 57.304 29.630 10.61 0.00 0.00 3.02
3995 4868 6.961360 TGTGGTACATTTGGACAAAATACA 57.039 33.333 17.22 5.12 44.52 2.29
4013 4886 8.919145 TCCTAAATTCAAACTTTGTAATGTGGT 58.081 29.630 1.44 0.00 0.00 4.16
4019 4892 9.757227 CACCAATCCTAAATTCAAACTTTGTAA 57.243 29.630 1.44 0.00 0.00 2.41
4020 4893 8.364142 CCACCAATCCTAAATTCAAACTTTGTA 58.636 33.333 1.44 0.00 0.00 2.41
4022 4895 6.650390 CCCACCAATCCTAAATTCAAACTTTG 59.350 38.462 0.00 0.00 0.00 2.77
4023 4896 6.239858 CCCCACCAATCCTAAATTCAAACTTT 60.240 38.462 0.00 0.00 0.00 2.66
4026 4899 4.622933 GCCCCACCAATCCTAAATTCAAAC 60.623 45.833 0.00 0.00 0.00 2.93
4030 4903 2.039418 GGCCCCACCAATCCTAAATTC 58.961 52.381 0.00 0.00 38.86 2.17
4035 4908 0.253630 AGAAGGCCCCACCAATCCTA 60.254 55.000 0.00 0.00 43.14 2.94
4075 4949 8.028938 ACACTAAGCAGCATACCTTAATTTTTG 58.971 33.333 0.00 0.00 0.00 2.44
4172 5046 0.036765 TGGTGCGAGCGATTAAAGGT 60.037 50.000 0.00 0.00 0.00 3.50
4198 5072 1.070957 GGGAGCCGGGCTACATAAC 59.929 63.158 31.47 13.74 42.18 1.89
4210 5084 2.766229 GAGAGAGGGTGGGGAGCC 60.766 72.222 0.00 0.00 0.00 4.70
4211 5085 1.760480 GAGAGAGAGGGTGGGGAGC 60.760 68.421 0.00 0.00 0.00 4.70
4218 5092 1.306568 GGCAAGGGAGAGAGAGGGT 60.307 63.158 0.00 0.00 0.00 4.34
4221 5095 1.336632 CCTGGGCAAGGGAGAGAGAG 61.337 65.000 0.00 0.00 43.15 3.20
4296 5170 3.542742 GTCGGTCGTAGCGCTTGC 61.543 66.667 18.68 8.59 39.21 4.01
4297 5171 2.879462 GGTCGGTCGTAGCGCTTG 60.879 66.667 18.68 9.48 39.21 4.01
4298 5172 4.125695 GGGTCGGTCGTAGCGCTT 62.126 66.667 18.68 0.00 39.21 4.68
4301 5175 4.487412 GTGGGGTCGGTCGTAGCG 62.487 72.222 0.00 0.00 40.97 4.26
4302 5176 3.352338 CTGTGGGGTCGGTCGTAGC 62.352 68.421 0.00 0.00 0.00 3.58
4304 5178 3.376078 GCTGTGGGGTCGGTCGTA 61.376 66.667 0.00 0.00 0.00 3.43
4309 5183 4.087892 CTCTGGCTGTGGGGTCGG 62.088 72.222 0.00 0.00 0.00 4.79
4310 5184 2.997315 TCTCTGGCTGTGGGGTCG 60.997 66.667 0.00 0.00 0.00 4.79
4311 5185 2.177594 CTGTCTCTGGCTGTGGGGTC 62.178 65.000 0.00 0.00 0.00 4.46
4312 5186 2.122413 TGTCTCTGGCTGTGGGGT 60.122 61.111 0.00 0.00 0.00 4.95
4313 5187 1.483595 TTCTGTCTCTGGCTGTGGGG 61.484 60.000 0.00 0.00 0.00 4.96
4314 5188 0.617413 ATTCTGTCTCTGGCTGTGGG 59.383 55.000 0.00 0.00 0.00 4.61
4315 5189 2.289882 TGAATTCTGTCTCTGGCTGTGG 60.290 50.000 7.05 0.00 0.00 4.17
4317 5191 3.777106 TTGAATTCTGTCTCTGGCTGT 57.223 42.857 7.05 0.00 0.00 4.40
4318 5192 3.817084 TGTTTGAATTCTGTCTCTGGCTG 59.183 43.478 7.05 0.00 0.00 4.85
4319 5193 4.070716 CTGTTTGAATTCTGTCTCTGGCT 58.929 43.478 7.05 0.00 0.00 4.75
4320 5194 3.365767 GCTGTTTGAATTCTGTCTCTGGC 60.366 47.826 7.05 0.00 0.00 4.85
4322 5196 5.686159 AAGCTGTTTGAATTCTGTCTCTG 57.314 39.130 7.05 0.00 0.00 3.35
4323 5197 6.705863 AAAAGCTGTTTGAATTCTGTCTCT 57.294 33.333 7.05 0.00 0.00 3.10
4360 5490 2.910199 CTAAGCTAAGCACCTGCATGA 58.090 47.619 0.00 0.00 45.16 3.07
4366 5496 3.186702 GCTAAGCTAAGCTAAGCACCT 57.813 47.619 0.00 0.00 45.30 4.00
4421 5551 1.000827 CTGCTCCTCGCGTATCATTCT 60.001 52.381 5.77 0.00 43.27 2.40
4425 5555 1.448119 CCTCTGCTCCTCGCGTATCA 61.448 60.000 5.77 0.00 43.27 2.15
4427 5557 2.851071 GCCTCTGCTCCTCGCGTAT 61.851 63.158 5.77 0.00 43.27 3.06
4467 5597 2.624316 TCGTGTAGCCAAAGTCTACG 57.376 50.000 0.00 0.00 39.30 3.51
4477 5607 5.161358 TGATCGAATAATCATCGTGTAGCC 58.839 41.667 0.00 0.00 40.99 3.93
4481 5611 8.642908 TTAAACTGATCGAATAATCATCGTGT 57.357 30.769 0.00 0.00 40.99 4.49
4512 5642 9.469807 GTCATTAGTCTGAATAATTGAGATCGT 57.530 33.333 7.57 0.00 0.00 3.73
4565 5695 3.285745 GCTTAACGTTTAGTGTGCACAC 58.714 45.455 37.13 37.13 46.77 3.82
4569 5699 3.824414 ATGGCTTAACGTTTAGTGTGC 57.176 42.857 15.08 2.33 0.00 4.57
4571 5701 7.625606 GCTTGATAATGGCTTAACGTTTAGTGT 60.626 37.037 15.08 0.27 0.00 3.55
4572 5702 6.687105 GCTTGATAATGGCTTAACGTTTAGTG 59.313 38.462 15.08 1.42 0.00 2.74
4579 5718 2.032030 CGGGCTTGATAATGGCTTAACG 60.032 50.000 0.00 0.00 0.00 3.18
4634 5773 4.209452 TCAGCGAACAACATTTCAGAAC 57.791 40.909 0.00 0.00 0.00 3.01
4645 5785 0.673644 GCCCTAAGCTCAGCGAACAA 60.674 55.000 0.00 0.00 38.99 2.83
4650 5790 0.659957 GAAATGCCCTAAGCTCAGCG 59.340 55.000 0.00 0.00 44.23 5.18
4664 5804 1.312371 ATGGGTCGGCGTTGGAAATG 61.312 55.000 6.85 0.00 35.44 2.32
4665 5805 0.253610 TATGGGTCGGCGTTGGAAAT 59.746 50.000 6.85 0.00 0.00 2.17
4666 5806 0.036448 TTATGGGTCGGCGTTGGAAA 59.964 50.000 6.85 0.00 0.00 3.13
4667 5807 0.036448 TTTATGGGTCGGCGTTGGAA 59.964 50.000 6.85 0.00 0.00 3.53
4668 5808 0.674269 GTTTATGGGTCGGCGTTGGA 60.674 55.000 6.85 0.00 0.00 3.53
4669 5809 1.650314 GGTTTATGGGTCGGCGTTGG 61.650 60.000 6.85 0.00 0.00 3.77
4670 5810 1.798087 GGTTTATGGGTCGGCGTTG 59.202 57.895 6.85 0.00 0.00 4.10
4671 5811 1.742510 CGGTTTATGGGTCGGCGTT 60.743 57.895 6.85 0.00 0.00 4.84
4672 5812 2.125431 CGGTTTATGGGTCGGCGT 60.125 61.111 6.85 0.00 0.00 5.68
4673 5813 3.569690 GCGGTTTATGGGTCGGCG 61.570 66.667 0.00 0.00 0.00 6.46
4674 5814 3.206957 GGCGGTTTATGGGTCGGC 61.207 66.667 0.00 0.00 40.61 5.54
4675 5815 1.817941 CAGGCGGTTTATGGGTCGG 60.818 63.158 0.00 0.00 0.00 4.79
4676 5816 2.469516 GCAGGCGGTTTATGGGTCG 61.470 63.158 0.00 0.00 0.00 4.79
4677 5817 2.469516 CGCAGGCGGTTTATGGGTC 61.470 63.158 5.63 0.00 35.56 4.46
4678 5818 2.437716 CGCAGGCGGTTTATGGGT 60.438 61.111 5.63 0.00 35.56 4.51
4679 5819 2.043980 AACGCAGGCGGTTTATGGG 61.044 57.895 18.63 0.00 44.69 4.00
4680 5820 1.136565 CAACGCAGGCGGTTTATGG 59.863 57.895 18.63 0.00 44.69 2.74
4681 5821 1.080298 TACAACGCAGGCGGTTTATG 58.920 50.000 18.63 10.54 44.69 1.90
4682 5822 1.465777 GTTACAACGCAGGCGGTTTAT 59.534 47.619 18.63 1.94 44.69 1.40
4683 5823 0.867086 GTTACAACGCAGGCGGTTTA 59.133 50.000 18.63 6.02 44.69 2.01
4684 5824 1.650363 GTTACAACGCAGGCGGTTT 59.350 52.632 18.63 7.15 44.69 3.27
4685 5825 3.336566 GTTACAACGCAGGCGGTT 58.663 55.556 18.63 7.10 44.69 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.