Multiple sequence alignment - TraesCS2D01G160100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G160100 chr2D 100.000 4329 0 0 2389 6717 102939894 102944222 0.000000e+00 7995
1 TraesCS2D01G160100 chr2D 100.000 2145 0 0 1 2145 102937506 102939650 0.000000e+00 3962
2 TraesCS2D01G160100 chr2D 99.449 544 2 1 1 543 102928817 102929360 0.000000e+00 987
3 TraesCS2D01G160100 chr2D 94.118 221 10 2 6500 6717 103130143 103129923 3.880000e-87 333
4 TraesCS2D01G160100 chr2D 83.844 359 41 12 6362 6712 99658387 99658736 6.500000e-85 326
5 TraesCS2D01G160100 chr2D 91.441 222 18 1 6495 6715 106265608 106265387 3.040000e-78 303
6 TraesCS2D01G160100 chr2A 89.075 2691 204 45 2390 5023 102029731 102032388 0.000000e+00 3258
7 TraesCS2D01G160100 chr2A 91.573 1329 77 18 755 2059 102027307 102028624 0.000000e+00 1801
8 TraesCS2D01G160100 chr2A 88.249 1336 88 42 5167 6480 102032533 102033821 0.000000e+00 1533
9 TraesCS2D01G160100 chr2A 89.323 384 27 4 2608 2982 102029159 102029537 2.840000e-128 470
10 TraesCS2D01G160100 chr2A 90.708 226 15 6 6494 6715 102325479 102325256 5.090000e-76 296
11 TraesCS2D01G160100 chr2A 86.765 204 18 4 2407 2610 102028884 102029078 1.130000e-52 219
12 TraesCS2D01G160100 chr2A 94.891 137 7 0 4922 5058 102032388 102032524 1.470000e-51 215
13 TraesCS2D01G160100 chr2B 88.249 1668 145 19 2389 4020 154486616 154488268 0.000000e+00 1947
14 TraesCS2D01G160100 chr2B 96.147 1116 39 2 994 2106 154485475 154486589 0.000000e+00 1820
15 TraesCS2D01G160100 chr2B 87.540 1557 109 39 5168 6708 154489285 154490772 0.000000e+00 1722
16 TraesCS2D01G160100 chr2B 93.612 861 46 7 4198 5052 154488415 154489272 0.000000e+00 1277
17 TraesCS2D01G160100 chr2B 93.088 217 12 3 6495 6708 154491832 154492048 1.410000e-81 315
18 TraesCS2D01G160100 chr2B 92.237 219 15 2 6496 6712 154907067 154906849 6.540000e-80 309
19 TraesCS2D01G160100 chr2B 91.556 225 17 2 6495 6717 154930224 154930000 6.540000e-80 309
20 TraesCS2D01G160100 chr2B 92.593 81 6 0 4121 4201 154488307 154488387 4.260000e-22 117
21 TraesCS2D01G160100 chr3D 99.081 544 4 1 1 543 389218558 389218015 0.000000e+00 976
22 TraesCS2D01G160100 chr1D 99.081 544 4 1 1 543 27910376 27910919 0.000000e+00 976
23 TraesCS2D01G160100 chr1D 97.464 552 13 1 2 552 254520541 254521092 0.000000e+00 941
24 TraesCS2D01G160100 chr1D 92.593 108 8 0 5062 5169 446428390 446428283 9.020000e-34 156
25 TraesCS2D01G160100 chr1D 91.818 110 9 0 5061 5170 335588902 335588793 3.240000e-33 154
26 TraesCS2D01G160100 chr4D 98.718 546 6 1 2 546 346433548 346433003 0.000000e+00 968
27 TraesCS2D01G160100 chr4D 98.165 545 8 2 2 545 339030293 339030836 0.000000e+00 950
28 TraesCS2D01G160100 chr4D 98.158 543 8 2 2 543 296219312 296218771 0.000000e+00 946
29 TraesCS2D01G160100 chr4D 83.333 168 27 1 605 772 61121252 61121086 3.240000e-33 154
30 TraesCS2D01G160100 chr6D 98.158 543 9 1 2 543 414736064 414736606 0.000000e+00 946
31 TraesCS2D01G160100 chr6D 97.641 551 11 2 2 551 229454353 229453804 0.000000e+00 944
32 TraesCS2D01G160100 chr6D 84.080 201 31 1 570 770 55208385 55208584 6.870000e-45 193
33 TraesCS2D01G160100 chr6D 90.000 110 10 1 5060 5169 392280708 392280600 2.530000e-29 141
34 TraesCS2D01G160100 chr5A 91.364 220 16 3 6495 6712 10860503 10860721 1.420000e-76 298
35 TraesCS2D01G160100 chr7A 82.741 197 33 1 576 772 93136074 93135879 2.490000e-39 174
36 TraesCS2D01G160100 chr7D 82.412 199 33 2 571 769 113890638 113890834 8.960000e-39 172
37 TraesCS2D01G160100 chr7D 81.564 179 32 1 594 772 116824844 116824667 5.430000e-31 147
38 TraesCS2D01G160100 chr5D 82.266 203 33 3 571 772 2282473 2282673 8.960000e-39 172
39 TraesCS2D01G160100 chr5D 90.909 110 10 0 5060 5169 556545178 556545287 1.510000e-31 148
40 TraesCS2D01G160100 chr6B 81.773 203 36 1 570 772 43093906 43094107 1.160000e-37 169
41 TraesCS2D01G160100 chr4B 82.234 197 34 1 576 772 136052124 136051929 1.160000e-37 169
42 TraesCS2D01G160100 chr1B 92.727 110 8 0 5061 5170 451736561 451736452 6.970000e-35 159
43 TraesCS2D01G160100 chr1B 92.593 108 8 0 5062 5169 610356608 610356501 9.020000e-34 156
44 TraesCS2D01G160100 chr6A 91.892 111 8 1 5060 5170 538105617 538105508 3.240000e-33 154
45 TraesCS2D01G160100 chr4A 80.808 198 37 1 573 770 90890747 90890551 3.240000e-33 154
46 TraesCS2D01G160100 chr1A 90.909 110 7 3 5074 5182 565993399 565993506 1.950000e-30 145
47 TraesCS2D01G160100 chr1A 90.741 108 9 1 5062 5169 542140305 542140199 7.020000e-30 143


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G160100 chr2D 102937506 102944222 6716 False 5978.500000 7995 100.000000 1 6717 2 chr2D.!!$F3 6716
1 TraesCS2D01G160100 chr2D 102928817 102929360 543 False 987.000000 987 99.449000 1 543 1 chr2D.!!$F2 542
2 TraesCS2D01G160100 chr2A 102027307 102033821 6514 False 1249.333333 3258 89.979333 755 6480 6 chr2A.!!$F1 5725
3 TraesCS2D01G160100 chr2B 154485475 154492048 6573 False 1199.666667 1947 91.871500 994 6708 6 chr2B.!!$F1 5714
4 TraesCS2D01G160100 chr3D 389218015 389218558 543 True 976.000000 976 99.081000 1 543 1 chr3D.!!$R1 542
5 TraesCS2D01G160100 chr1D 27910376 27910919 543 False 976.000000 976 99.081000 1 543 1 chr1D.!!$F1 542
6 TraesCS2D01G160100 chr1D 254520541 254521092 551 False 941.000000 941 97.464000 2 552 1 chr1D.!!$F2 550
7 TraesCS2D01G160100 chr4D 346433003 346433548 545 True 968.000000 968 98.718000 2 546 1 chr4D.!!$R3 544
8 TraesCS2D01G160100 chr4D 339030293 339030836 543 False 950.000000 950 98.165000 2 545 1 chr4D.!!$F1 543
9 TraesCS2D01G160100 chr4D 296218771 296219312 541 True 946.000000 946 98.158000 2 543 1 chr4D.!!$R2 541
10 TraesCS2D01G160100 chr6D 414736064 414736606 542 False 946.000000 946 98.158000 2 543 1 chr6D.!!$F2 541
11 TraesCS2D01G160100 chr6D 229453804 229454353 549 True 944.000000 944 97.641000 2 551 1 chr6D.!!$R1 549

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
779 781 0.036388 TCTTGCAGCCCTCCGTTTAG 60.036 55.0 0.00 0.00 0.00 1.85 F
2463 3261 0.602638 TTGGTCTGTGTGATCACCGC 60.603 55.0 22.85 15.59 43.26 5.68 F
3218 4064 0.553333 GGCTGGCCCTCTTATTCCTT 59.447 55.0 0.00 0.00 0.00 3.36 F
3533 4380 0.833834 CTGGAGGCATCCCCGTATCT 60.834 60.0 16.13 0.00 46.04 1.98 F
4704 5617 0.901580 CCCAGGTTTGCTGAATGCCT 60.902 55.0 0.00 0.00 42.00 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2742 3542 1.204941 GTGACGTGCCCTACTCTTCAT 59.795 52.381 0.00 0.0 0.00 2.57 R
3319 4165 0.321671 CCCAACCTGAGTGTCACGAT 59.678 55.000 0.00 0.0 0.00 3.73 R
5065 6087 0.107848 AGTTAATTCCGGACAGCGGG 60.108 55.000 1.83 0.0 35.92 6.13 R
5066 6088 1.006832 CAGTTAATTCCGGACAGCGG 58.993 55.000 1.83 0.0 0.00 5.52 R
6540 8863 0.034059 CCCGCTCTTATGTAGCCCAG 59.966 60.000 0.00 0.0 36.60 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
510 512 0.938008 TCGTACACATTTGCGTGCAA 59.062 45.000 2.58 2.58 40.73 4.08
546 548 3.968837 ATCGGGGGCGTCACACCTA 62.969 63.158 0.00 0.00 0.00 3.08
552 554 2.490991 GGGGCGTCACACCTATTTATC 58.509 52.381 0.00 0.00 0.00 1.75
553 555 2.104281 GGGGCGTCACACCTATTTATCT 59.896 50.000 0.00 0.00 0.00 1.98
554 556 3.433173 GGGGCGTCACACCTATTTATCTT 60.433 47.826 0.00 0.00 0.00 2.40
555 557 4.196971 GGGCGTCACACCTATTTATCTTT 58.803 43.478 0.00 0.00 0.00 2.52
556 558 5.362263 GGGCGTCACACCTATTTATCTTTA 58.638 41.667 0.00 0.00 0.00 1.85
557 559 5.235831 GGGCGTCACACCTATTTATCTTTAC 59.764 44.000 0.00 0.00 0.00 2.01
558 560 5.235831 GGCGTCACACCTATTTATCTTTACC 59.764 44.000 0.00 0.00 0.00 2.85
559 561 5.813672 GCGTCACACCTATTTATCTTTACCA 59.186 40.000 0.00 0.00 0.00 3.25
560 562 6.482308 GCGTCACACCTATTTATCTTTACCAT 59.518 38.462 0.00 0.00 0.00 3.55
561 563 7.654520 GCGTCACACCTATTTATCTTTACCATA 59.345 37.037 0.00 0.00 0.00 2.74
562 564 9.706691 CGTCACACCTATTTATCTTTACCATAT 57.293 33.333 0.00 0.00 0.00 1.78
605 607 7.678947 AATTAAATGATCTCGGGCTATCAAG 57.321 36.000 0.00 0.00 35.82 3.02
618 620 3.091417 GCTATCAAGCTAAAAACGTGCG 58.909 45.455 0.00 0.00 45.85 5.34
619 621 3.181524 GCTATCAAGCTAAAAACGTGCGA 60.182 43.478 0.00 0.00 45.85 5.10
620 622 2.941891 TCAAGCTAAAAACGTGCGAG 57.058 45.000 0.00 0.00 0.00 5.03
621 623 1.070175 TCAAGCTAAAAACGTGCGAGC 60.070 47.619 0.00 0.00 0.00 5.03
622 624 1.069906 CAAGCTAAAAACGTGCGAGCT 60.070 47.619 8.29 8.29 45.23 4.09
623 625 0.512952 AGCTAAAAACGTGCGAGCTG 59.487 50.000 12.20 0.00 41.82 4.24
624 626 0.452784 GCTAAAAACGTGCGAGCTGG 60.453 55.000 0.00 0.00 0.00 4.85
625 627 0.865769 CTAAAAACGTGCGAGCTGGT 59.134 50.000 0.00 0.00 0.00 4.00
626 628 0.584396 TAAAAACGTGCGAGCTGGTG 59.416 50.000 0.00 0.00 0.00 4.17
627 629 1.373590 AAAAACGTGCGAGCTGGTGT 61.374 50.000 0.00 0.00 0.00 4.16
628 630 1.373590 AAAACGTGCGAGCTGGTGTT 61.374 50.000 0.00 0.00 0.00 3.32
629 631 2.047151 AAACGTGCGAGCTGGTGTTG 62.047 55.000 0.00 0.00 0.00 3.33
630 632 3.716006 CGTGCGAGCTGGTGTTGG 61.716 66.667 0.00 0.00 0.00 3.77
631 633 4.030452 GTGCGAGCTGGTGTTGGC 62.030 66.667 0.00 0.00 0.00 4.52
632 634 4.254709 TGCGAGCTGGTGTTGGCT 62.255 61.111 0.00 0.00 41.88 4.75
636 638 4.488790 AGCTGGTGTTGGCTCAAG 57.511 55.556 0.00 0.00 32.98 3.02
637 639 1.839191 AGCTGGTGTTGGCTCAAGA 59.161 52.632 0.00 0.00 32.98 3.02
638 640 0.403271 AGCTGGTGTTGGCTCAAGAT 59.597 50.000 0.00 0.00 32.98 2.40
639 641 0.807496 GCTGGTGTTGGCTCAAGATC 59.193 55.000 0.00 0.00 0.00 2.75
640 642 1.883638 GCTGGTGTTGGCTCAAGATCA 60.884 52.381 0.00 0.00 0.00 2.92
641 643 2.507484 CTGGTGTTGGCTCAAGATCAA 58.493 47.619 0.00 0.00 27.66 2.57
642 644 2.227388 CTGGTGTTGGCTCAAGATCAAC 59.773 50.000 0.00 0.00 40.59 3.18
643 645 2.158623 TGGTGTTGGCTCAAGATCAACT 60.159 45.455 13.72 0.00 40.75 3.16
644 646 2.485814 GGTGTTGGCTCAAGATCAACTC 59.514 50.000 13.72 11.18 40.75 3.01
645 647 3.141398 GTGTTGGCTCAAGATCAACTCA 58.859 45.455 13.72 0.00 40.75 3.41
646 648 3.755378 GTGTTGGCTCAAGATCAACTCAT 59.245 43.478 13.72 0.00 40.75 2.90
647 649 4.217118 GTGTTGGCTCAAGATCAACTCATT 59.783 41.667 13.72 0.00 40.75 2.57
648 650 4.828939 TGTTGGCTCAAGATCAACTCATTT 59.171 37.500 13.72 0.00 40.75 2.32
649 651 5.048504 TGTTGGCTCAAGATCAACTCATTTC 60.049 40.000 13.72 0.00 40.75 2.17
650 652 4.914983 TGGCTCAAGATCAACTCATTTCT 58.085 39.130 0.00 0.00 0.00 2.52
651 653 4.940046 TGGCTCAAGATCAACTCATTTCTC 59.060 41.667 0.00 0.00 0.00 2.87
652 654 4.033817 GGCTCAAGATCAACTCATTTCTCG 59.966 45.833 0.00 0.00 0.00 4.04
653 655 4.867047 GCTCAAGATCAACTCATTTCTCGA 59.133 41.667 0.00 0.00 0.00 4.04
654 656 5.523188 GCTCAAGATCAACTCATTTCTCGAT 59.477 40.000 0.00 0.00 0.00 3.59
655 657 6.292274 GCTCAAGATCAACTCATTTCTCGATC 60.292 42.308 0.00 0.00 0.00 3.69
656 658 5.745769 TCAAGATCAACTCATTTCTCGATCG 59.254 40.000 9.36 9.36 35.52 3.69
657 659 5.506686 AGATCAACTCATTTCTCGATCGA 57.493 39.130 18.32 18.32 35.52 3.59
658 660 5.518812 AGATCAACTCATTTCTCGATCGAG 58.481 41.667 34.20 34.20 43.21 4.04
659 661 3.439293 TCAACTCATTTCTCGATCGAGC 58.561 45.455 34.92 0.00 41.71 5.03
660 662 3.129462 TCAACTCATTTCTCGATCGAGCT 59.871 43.478 34.92 21.01 41.71 4.09
661 663 4.335594 TCAACTCATTTCTCGATCGAGCTA 59.664 41.667 34.92 25.54 41.71 3.32
662 664 4.217754 ACTCATTTCTCGATCGAGCTAC 57.782 45.455 34.92 0.00 41.71 3.58
663 665 3.628032 ACTCATTTCTCGATCGAGCTACA 59.372 43.478 34.92 18.75 41.71 2.74
664 666 4.277174 ACTCATTTCTCGATCGAGCTACAT 59.723 41.667 34.92 21.48 41.71 2.29
665 667 5.470437 ACTCATTTCTCGATCGAGCTACATA 59.530 40.000 34.92 17.69 41.71 2.29
666 668 6.017026 ACTCATTTCTCGATCGAGCTACATAA 60.017 38.462 34.92 22.03 41.71 1.90
667 669 6.735130 TCATTTCTCGATCGAGCTACATAAA 58.265 36.000 34.92 27.70 41.71 1.40
668 670 7.200455 TCATTTCTCGATCGAGCTACATAAAA 58.800 34.615 34.92 27.10 41.71 1.52
669 671 7.867909 TCATTTCTCGATCGAGCTACATAAAAT 59.132 33.333 34.92 27.87 41.71 1.82
670 672 6.993175 TTCTCGATCGAGCTACATAAAATG 57.007 37.500 34.92 12.34 41.71 2.32
671 673 6.073327 TCTCGATCGAGCTACATAAAATGT 57.927 37.500 34.92 0.00 43.01 2.71
672 674 6.504398 TCTCGATCGAGCTACATAAAATGTT 58.496 36.000 34.92 0.00 41.79 2.71
673 675 6.637254 TCTCGATCGAGCTACATAAAATGTTC 59.363 38.462 34.92 0.00 41.79 3.18
674 676 6.270064 TCGATCGAGCTACATAAAATGTTCA 58.730 36.000 15.15 0.00 41.63 3.18
675 677 6.754675 TCGATCGAGCTACATAAAATGTTCAA 59.245 34.615 15.15 0.00 41.63 2.69
676 678 7.276878 TCGATCGAGCTACATAAAATGTTCAAA 59.723 33.333 15.15 0.00 41.63 2.69
677 679 7.370836 CGATCGAGCTACATAAAATGTTCAAAC 59.629 37.037 10.26 0.00 41.63 2.93
678 680 7.667043 TCGAGCTACATAAAATGTTCAAACT 57.333 32.000 0.00 0.00 41.63 2.66
679 681 7.739295 TCGAGCTACATAAAATGTTCAAACTC 58.261 34.615 0.00 0.00 41.63 3.01
680 682 7.386573 TCGAGCTACATAAAATGTTCAAACTCA 59.613 33.333 0.00 0.00 41.63 3.41
681 683 7.689812 CGAGCTACATAAAATGTTCAAACTCAG 59.310 37.037 0.00 0.00 41.63 3.35
682 684 7.308435 AGCTACATAAAATGTTCAAACTCAGC 58.692 34.615 0.00 0.00 41.63 4.26
683 685 7.175641 AGCTACATAAAATGTTCAAACTCAGCT 59.824 33.333 0.00 1.54 41.63 4.24
684 686 7.483059 GCTACATAAAATGTTCAAACTCAGCTC 59.517 37.037 0.00 0.00 41.63 4.09
685 687 7.275888 ACATAAAATGTTCAAACTCAGCTCA 57.724 32.000 0.00 0.00 41.63 4.26
686 688 7.889469 ACATAAAATGTTCAAACTCAGCTCAT 58.111 30.769 0.00 0.00 41.63 2.90
687 689 8.362639 ACATAAAATGTTCAAACTCAGCTCATT 58.637 29.630 0.00 0.00 41.63 2.57
688 690 9.199982 CATAAAATGTTCAAACTCAGCTCATTT 57.800 29.630 0.00 0.00 36.18 2.32
689 691 7.704789 AAAATGTTCAAACTCAGCTCATTTC 57.295 32.000 5.12 0.00 34.44 2.17
690 692 6.645790 AATGTTCAAACTCAGCTCATTTCT 57.354 33.333 0.00 0.00 0.00 2.52
691 693 6.645790 ATGTTCAAACTCAGCTCATTTCTT 57.354 33.333 0.00 0.00 0.00 2.52
692 694 6.455360 TGTTCAAACTCAGCTCATTTCTTT 57.545 33.333 0.00 0.00 0.00 2.52
693 695 6.866480 TGTTCAAACTCAGCTCATTTCTTTT 58.134 32.000 0.00 0.00 0.00 2.27
694 696 7.322664 TGTTCAAACTCAGCTCATTTCTTTTT 58.677 30.769 0.00 0.00 0.00 1.94
695 697 7.276218 TGTTCAAACTCAGCTCATTTCTTTTTG 59.724 33.333 0.00 0.00 0.00 2.44
696 698 7.099266 TCAAACTCAGCTCATTTCTTTTTGA 57.901 32.000 0.00 0.00 0.00 2.69
697 699 7.198390 TCAAACTCAGCTCATTTCTTTTTGAG 58.802 34.615 0.00 0.00 41.84 3.02
698 700 6.705863 AACTCAGCTCATTTCTTTTTGAGT 57.294 33.333 0.00 0.00 43.89 3.41
699 701 6.069684 ACTCAGCTCATTTCTTTTTGAGTG 57.930 37.500 3.68 0.74 41.39 3.51
700 702 5.824624 ACTCAGCTCATTTCTTTTTGAGTGA 59.175 36.000 3.68 4.29 41.39 3.41
701 703 6.319658 ACTCAGCTCATTTCTTTTTGAGTGAA 59.680 34.615 3.68 0.00 41.39 3.18
702 704 7.014038 ACTCAGCTCATTTCTTTTTGAGTGAAT 59.986 33.333 3.68 0.00 41.39 2.57
703 705 7.365741 TCAGCTCATTTCTTTTTGAGTGAATC 58.634 34.615 2.30 0.00 41.16 2.52
704 706 7.230108 TCAGCTCATTTCTTTTTGAGTGAATCT 59.770 33.333 2.30 0.00 41.16 2.40
705 707 7.537991 CAGCTCATTTCTTTTTGAGTGAATCTC 59.462 37.037 2.30 0.00 41.16 2.75
717 719 5.633830 GAGTGAATCTCAAATCAAGCCAA 57.366 39.130 0.00 0.00 42.34 4.52
718 720 6.017400 GAGTGAATCTCAAATCAAGCCAAA 57.983 37.500 0.00 0.00 42.34 3.28
719 721 6.409524 AGTGAATCTCAAATCAAGCCAAAA 57.590 33.333 0.00 0.00 0.00 2.44
720 722 7.001099 AGTGAATCTCAAATCAAGCCAAAAT 57.999 32.000 0.00 0.00 0.00 1.82
721 723 8.125978 AGTGAATCTCAAATCAAGCCAAAATA 57.874 30.769 0.00 0.00 0.00 1.40
722 724 8.031277 AGTGAATCTCAAATCAAGCCAAAATAC 58.969 33.333 0.00 0.00 0.00 1.89
723 725 7.008628 GTGAATCTCAAATCAAGCCAAAATACG 59.991 37.037 0.00 0.00 0.00 3.06
724 726 6.757897 ATCTCAAATCAAGCCAAAATACGA 57.242 33.333 0.00 0.00 0.00 3.43
725 727 6.182039 TCTCAAATCAAGCCAAAATACGAG 57.818 37.500 0.00 0.00 0.00 4.18
726 728 5.705441 TCTCAAATCAAGCCAAAATACGAGT 59.295 36.000 0.00 0.00 0.00 4.18
727 729 5.698832 TCAAATCAAGCCAAAATACGAGTG 58.301 37.500 0.00 0.00 0.00 3.51
728 730 4.701956 AATCAAGCCAAAATACGAGTGG 57.298 40.909 0.00 0.00 35.39 4.00
729 731 3.410631 TCAAGCCAAAATACGAGTGGA 57.589 42.857 0.00 0.00 34.05 4.02
730 732 3.950397 TCAAGCCAAAATACGAGTGGAT 58.050 40.909 0.00 0.00 34.05 3.41
731 733 3.938963 TCAAGCCAAAATACGAGTGGATC 59.061 43.478 0.00 0.00 34.05 3.36
732 734 3.914426 AGCCAAAATACGAGTGGATCT 57.086 42.857 0.00 0.00 34.05 2.75
733 735 3.798202 AGCCAAAATACGAGTGGATCTC 58.202 45.455 0.00 0.00 39.62 2.75
734 736 3.197766 AGCCAAAATACGAGTGGATCTCA 59.802 43.478 0.00 0.00 42.88 3.27
735 737 3.938963 GCCAAAATACGAGTGGATCTCAA 59.061 43.478 0.00 0.00 42.88 3.02
736 738 4.394920 GCCAAAATACGAGTGGATCTCAAA 59.605 41.667 0.00 0.00 42.88 2.69
737 739 5.066505 GCCAAAATACGAGTGGATCTCAAAT 59.933 40.000 0.00 0.00 42.88 2.32
738 740 6.489675 CCAAAATACGAGTGGATCTCAAATG 58.510 40.000 0.00 0.00 42.88 2.32
739 741 6.458751 CCAAAATACGAGTGGATCTCAAATGG 60.459 42.308 0.00 0.00 42.88 3.16
740 742 2.029838 ACGAGTGGATCTCAAATGGC 57.970 50.000 0.00 0.00 42.88 4.40
741 743 1.556911 ACGAGTGGATCTCAAATGGCT 59.443 47.619 0.00 0.00 42.88 4.75
742 744 2.208431 CGAGTGGATCTCAAATGGCTC 58.792 52.381 0.00 0.00 42.88 4.70
743 745 2.419159 CGAGTGGATCTCAAATGGCTCA 60.419 50.000 0.00 0.00 42.88 4.26
744 746 2.941720 GAGTGGATCTCAAATGGCTCAC 59.058 50.000 0.00 0.00 42.34 3.51
745 747 2.306805 AGTGGATCTCAAATGGCTCACA 59.693 45.455 0.00 0.00 0.00 3.58
746 748 3.084039 GTGGATCTCAAATGGCTCACAA 58.916 45.455 0.00 0.00 0.00 3.33
747 749 3.507233 GTGGATCTCAAATGGCTCACAAA 59.493 43.478 0.00 0.00 0.00 2.83
748 750 3.760151 TGGATCTCAAATGGCTCACAAAG 59.240 43.478 0.00 0.00 0.00 2.77
756 758 3.172919 GCTCACAAAGCCTCGAGC 58.827 61.111 6.99 2.54 45.92 5.03
766 768 3.369381 GCCTCGAGCTATTCTTGCA 57.631 52.632 6.99 0.00 38.99 4.08
767 769 1.216122 GCCTCGAGCTATTCTTGCAG 58.784 55.000 6.99 0.00 38.99 4.41
768 770 1.216122 CCTCGAGCTATTCTTGCAGC 58.784 55.000 6.99 0.00 38.09 5.25
769 771 1.216122 CTCGAGCTATTCTTGCAGCC 58.784 55.000 0.00 0.00 38.61 4.85
770 772 0.179073 TCGAGCTATTCTTGCAGCCC 60.179 55.000 0.00 0.00 38.61 5.19
771 773 0.179062 CGAGCTATTCTTGCAGCCCT 60.179 55.000 0.00 0.00 38.61 5.19
772 774 1.592064 GAGCTATTCTTGCAGCCCTC 58.408 55.000 0.00 0.00 38.61 4.30
773 775 0.182299 AGCTATTCTTGCAGCCCTCC 59.818 55.000 0.00 0.00 38.61 4.30
774 776 1.162800 GCTATTCTTGCAGCCCTCCG 61.163 60.000 0.00 0.00 0.00 4.63
775 777 0.179000 CTATTCTTGCAGCCCTCCGT 59.821 55.000 0.00 0.00 0.00 4.69
776 778 0.618458 TATTCTTGCAGCCCTCCGTT 59.382 50.000 0.00 0.00 0.00 4.44
777 779 0.251341 ATTCTTGCAGCCCTCCGTTT 60.251 50.000 0.00 0.00 0.00 3.60
778 780 0.398696 TTCTTGCAGCCCTCCGTTTA 59.601 50.000 0.00 0.00 0.00 2.01
779 781 0.036388 TCTTGCAGCCCTCCGTTTAG 60.036 55.000 0.00 0.00 0.00 1.85
780 782 1.002624 TTGCAGCCCTCCGTTTAGG 60.003 57.895 0.00 0.00 42.97 2.69
784 786 2.124695 GCCCTCCGTTTAGGCCTG 60.125 66.667 17.99 0.00 41.00 4.85
792 794 4.161565 CCTCCGTTTAGGCCTGCATATATA 59.838 45.833 17.99 0.00 40.77 0.86
824 826 7.550551 TGACTGATATCAAAATGGAACTCAGAC 59.449 37.037 6.90 0.00 0.00 3.51
826 828 5.817296 TGATATCAAAATGGAACTCAGACGG 59.183 40.000 1.98 0.00 0.00 4.79
827 829 3.762407 TCAAAATGGAACTCAGACGGA 57.238 42.857 0.00 0.00 0.00 4.69
828 830 3.399330 TCAAAATGGAACTCAGACGGAC 58.601 45.455 0.00 0.00 0.00 4.79
840 842 0.608582 AGACGGACGCTGGTTAGACT 60.609 55.000 0.00 0.00 0.00 3.24
855 857 9.613957 GCTGGTTAGACTTTCTATTTTCTTTTC 57.386 33.333 0.00 0.00 0.00 2.29
1089 1098 1.461268 TCAGCCCCAAGTCCAGTCA 60.461 57.895 0.00 0.00 0.00 3.41
1176 1185 3.210528 GACGACTCCGGCTCCGAT 61.211 66.667 10.28 0.00 41.56 4.18
1689 1701 1.543429 CCTGACCTCGCCAAAGTCTTT 60.543 52.381 0.00 0.00 0.00 2.52
1703 1715 2.912025 CTTTGCCCGCACCAAGGT 60.912 61.111 0.00 0.00 0.00 3.50
1738 1750 3.179830 ACTCTTTTAGCAGTCATACGCG 58.820 45.455 3.53 3.53 0.00 6.01
1876 1894 0.739813 GCCCATGTAGTCACACGACC 60.740 60.000 0.00 0.00 43.73 4.79
1888 1906 7.654923 TGTAGTCACACGACCTGTATATAGTAG 59.345 40.741 0.00 0.00 43.73 2.57
2048 2070 4.202245 TGCAAAGAAACTATCGGTAGCT 57.798 40.909 1.62 0.00 0.00 3.32
2077 2099 5.079689 TGTGCTAGAAATACGTGATTCCA 57.920 39.130 0.00 0.00 0.00 3.53
2085 2107 5.421056 AGAAATACGTGATTCCACTGAGGTA 59.579 40.000 0.00 0.00 41.06 3.08
2106 2394 7.338710 AGGTATAGCAGATTTCTTGTGCTTAA 58.661 34.615 4.48 0.00 45.31 1.85
2108 2396 7.281100 GGTATAGCAGATTTCTTGTGCTTAACT 59.719 37.037 2.45 0.00 45.31 2.24
2110 2398 3.916776 GCAGATTTCTTGTGCTTAACTGC 59.083 43.478 0.00 0.00 40.55 4.40
2111 2399 4.320788 GCAGATTTCTTGTGCTTAACTGCT 60.321 41.667 0.00 0.00 42.85 4.24
2113 2401 6.568462 GCAGATTTCTTGTGCTTAACTGCTTA 60.568 38.462 0.00 0.00 42.85 3.09
2134 2422 7.102346 GCTTATGTCTGATGTATGCTCCTTAT 58.898 38.462 0.00 0.00 0.00 1.73
2136 2424 5.219343 TGTCTGATGTATGCTCCTTATGG 57.781 43.478 0.00 0.00 0.00 2.74
2137 2425 4.040829 TGTCTGATGTATGCTCCTTATGGG 59.959 45.833 0.00 0.00 0.00 4.00
2140 2428 3.716353 TGATGTATGCTCCTTATGGGTGT 59.284 43.478 0.00 0.00 36.25 4.16
2141 2429 3.558931 TGTATGCTCCTTATGGGTGTG 57.441 47.619 0.00 0.00 36.25 3.82
2142 2430 2.843730 TGTATGCTCCTTATGGGTGTGT 59.156 45.455 0.00 0.00 36.25 3.72
2144 2432 2.198827 TGCTCCTTATGGGTGTGTTG 57.801 50.000 0.00 0.00 36.25 3.33
2463 3261 0.602638 TTGGTCTGTGTGATCACCGC 60.603 55.000 22.85 15.59 43.26 5.68
2478 3276 1.103398 ACCGCCATGCCTATTTGAGC 61.103 55.000 0.00 0.00 0.00 4.26
2488 3286 4.765273 TGCCTATTTGAGCGATCTTTGTA 58.235 39.130 0.90 0.00 0.00 2.41
2492 3290 6.709643 CCTATTTGAGCGATCTTTGTACTTG 58.290 40.000 0.90 0.00 0.00 3.16
2530 3328 5.527951 ACTGCATCTCAAGCATCTAGAATTG 59.472 40.000 0.00 3.00 41.82 2.32
2533 3331 6.481313 TGCATCTCAAGCATCTAGAATTGTAC 59.519 38.462 0.00 0.00 37.02 2.90
2552 3350 1.052124 CCTAGGTTGCCCGGATACCA 61.052 60.000 18.03 1.95 34.32 3.25
2565 3363 4.482386 CCGGATACCAATACTGTGATACG 58.518 47.826 0.00 0.00 0.00 3.06
2569 3367 3.838244 ACCAATACTGTGATACGGCAT 57.162 42.857 0.00 0.00 0.00 4.40
2597 3397 1.831106 TCTGAATGGTGCAGATACCGT 59.169 47.619 0.00 0.00 43.87 4.83
2613 3413 8.595533 GCAGATACCGTGATACATTTGTATATG 58.404 37.037 3.28 0.00 40.99 1.78
2702 3502 9.206870 CAAGGAAAATGCACTGTAAACATTATT 57.793 29.630 0.00 2.56 33.01 1.40
2734 3534 4.415881 TCAGCCACTGAAACTTCAACTA 57.584 40.909 0.00 0.00 37.57 2.24
2796 3596 3.053077 TCCGATCCCCTTATTGGACATT 58.947 45.455 0.00 0.00 34.94 2.71
2900 3735 5.476983 TCCACCTCCTAAGATATCCACAAT 58.523 41.667 0.00 0.00 0.00 2.71
2924 3759 4.884164 GGCTTGTTACCTAGATCATTTGCT 59.116 41.667 0.00 0.00 0.00 3.91
2929 3764 3.370840 ACCTAGATCATTTGCTGGCAA 57.629 42.857 3.72 3.72 0.00 4.52
2969 3804 8.023128 GTGAAGCACATACAACATTAGACAATT 58.977 33.333 0.00 0.00 34.08 2.32
2999 3845 6.060136 ACAAACTAGGTTAGAAAGGGTGAAC 58.940 40.000 0.00 0.00 0.00 3.18
3035 3881 6.041296 CCATAGCCAAGAAAATATTGCCTCTT 59.959 38.462 0.00 0.00 0.00 2.85
3044 3890 2.779755 TATTGCCTCTTGCTTCGGAA 57.220 45.000 0.00 0.00 42.00 4.30
3061 3907 1.423921 GGAACCTGGGAGGAACTGAAA 59.576 52.381 0.00 0.00 41.55 2.69
3075 3921 1.205893 ACTGAAAGAGATGGAGGCGAC 59.794 52.381 0.00 0.00 37.43 5.19
3088 3934 1.203523 GAGGCGACACTCAGATCTGTT 59.796 52.381 21.92 8.10 37.44 3.16
3149 3995 1.138661 CAGATGGAGGAGAGGAAGCAC 59.861 57.143 0.00 0.00 0.00 4.40
3150 3996 1.008206 AGATGGAGGAGAGGAAGCACT 59.992 52.381 0.00 0.00 0.00 4.40
3151 3997 1.138661 GATGGAGGAGAGGAAGCACTG 59.861 57.143 0.00 0.00 0.00 3.66
3152 3998 0.906756 TGGAGGAGAGGAAGCACTGG 60.907 60.000 0.00 0.00 0.00 4.00
3212 4058 2.367202 CCGAAGGCTGGCCCTCTTA 61.367 63.158 8.11 0.00 45.62 2.10
3218 4064 0.553333 GGCTGGCCCTCTTATTCCTT 59.447 55.000 0.00 0.00 0.00 3.36
3220 4066 1.064389 GCTGGCCCTCTTATTCCTTGT 60.064 52.381 0.00 0.00 0.00 3.16
3221 4067 2.621668 GCTGGCCCTCTTATTCCTTGTT 60.622 50.000 0.00 0.00 0.00 2.83
3287 4133 1.501170 CAGACCAGGGGAGGAGATAGA 59.499 57.143 0.00 0.00 0.00 1.98
3376 4222 1.774254 TGAGGACAAGGCAAGAAAGGA 59.226 47.619 0.00 0.00 0.00 3.36
3408 4254 2.536066 CCGTGGGTATGGATAGATGGA 58.464 52.381 0.00 0.00 34.72 3.41
3420 4266 7.654287 ATGGATAGATGGATTAGGGTTTTCT 57.346 36.000 0.00 0.00 0.00 2.52
3424 4270 7.039223 GGATAGATGGATTAGGGTTTTCTCGTA 60.039 40.741 0.00 0.00 0.00 3.43
3425 4271 5.915175 AGATGGATTAGGGTTTTCTCGTAC 58.085 41.667 0.00 0.00 0.00 3.67
3429 4275 4.604114 GGGTTTTCTCGTACCCCG 57.396 61.111 0.00 0.00 46.91 5.73
3432 4278 1.004679 GTTTTCTCGTACCCCGCCA 60.005 57.895 0.00 0.00 36.19 5.69
3448 4294 2.526432 CGCCAGTATAGGGGTGTATCT 58.474 52.381 0.00 0.00 36.89 1.98
3499 4346 5.106317 GGAAAACAGAAAATCGCCAGATACA 60.106 40.000 0.00 0.00 35.74 2.29
3508 4355 3.961480 TCGCCAGATACATATCTTGGG 57.039 47.619 9.53 9.53 40.91 4.12
3521 4368 3.728292 CTTGGGGGCATCTGGAGGC 62.728 68.421 0.00 0.00 37.39 4.70
3533 4380 0.833834 CTGGAGGCATCCCCGTATCT 60.834 60.000 16.13 0.00 46.04 1.98
3551 4398 5.288232 CGTATCTAGACGTATCTAACCTCCG 59.712 48.000 0.00 0.00 36.98 4.63
3566 4413 5.964958 AACCTCCGATATGCCATATTTTG 57.035 39.130 0.00 0.00 0.00 2.44
3592 4439 6.149474 GCCGTATACATGCATCCTAGAATTTT 59.851 38.462 0.00 0.00 0.00 1.82
3594 4441 8.230486 CCGTATACATGCATCCTAGAATTTTTC 58.770 37.037 0.00 0.00 0.00 2.29
3601 4448 9.520204 CATGCATCCTAGAATTTTTCGTATTTT 57.480 29.630 0.00 0.00 34.02 1.82
3617 4464 6.161381 TCGTATTTTCTCTTCCGCTAGTTTT 58.839 36.000 0.00 0.00 0.00 2.43
3628 4475 7.095270 TCTTCCGCTAGTTTTAGGTTTCTAAG 58.905 38.462 0.00 0.00 36.87 2.18
3762 4609 4.922692 CGGCAAACATTTCTATTTTCTGCA 59.077 37.500 0.00 0.00 0.00 4.41
3765 4612 6.291385 GCAAACATTTCTATTTTCTGCAACG 58.709 36.000 0.00 0.00 0.00 4.10
3792 4639 4.022329 TCGGATAATCTGCGATCTTTGCTA 60.022 41.667 0.00 0.00 43.27 3.49
3864 4711 6.258727 TCAAGACTGTTGAGAACTTAAAGCAG 59.741 38.462 0.00 0.00 0.00 4.24
3915 4762 6.558488 AAAGAGCTCCATCTTCTGTATCTT 57.442 37.500 10.93 0.00 38.59 2.40
3994 4841 1.774856 GGTATGCTCCCCTACACCATT 59.225 52.381 0.00 0.00 0.00 3.16
4011 4858 7.083875 ACACCATTAACTATTCATTGTTCCG 57.916 36.000 0.00 0.00 0.00 4.30
4012 4859 6.657541 ACACCATTAACTATTCATTGTTCCGT 59.342 34.615 0.00 0.00 0.00 4.69
4032 4879 5.128171 TCCGTGTAATAGGTTGCATAGAGTT 59.872 40.000 0.00 0.00 32.52 3.01
4064 4911 8.664798 TCCTCTCATGAACATTTTATTTACGTG 58.335 33.333 0.00 0.00 0.00 4.49
4067 4914 9.820229 TCTCATGAACATTTTATTTACGTGAAC 57.180 29.630 0.00 0.00 0.00 3.18
4073 4920 8.791355 AACATTTTATTTACGTGAACCAGAAC 57.209 30.769 0.00 0.00 0.00 3.01
4075 4922 9.275398 ACATTTTATTTACGTGAACCAGAACTA 57.725 29.630 0.00 0.00 0.00 2.24
4093 4940 7.115378 CCAGAACTATGCTGTTGATTTTGTTTC 59.885 37.037 0.00 0.00 0.00 2.78
4100 4947 4.350346 CTGTTGATTTTGTTTCGAGTGCA 58.650 39.130 0.00 0.00 0.00 4.57
4106 4953 7.301068 TGATTTTGTTTCGAGTGCAAAATTT 57.699 28.000 24.06 13.17 46.38 1.82
4107 4954 7.178741 TGATTTTGTTTCGAGTGCAAAATTTG 58.821 30.769 24.06 0.57 46.38 2.32
4110 4957 2.799978 GTTTCGAGTGCAAAATTTGGGG 59.200 45.455 7.89 0.00 0.00 4.96
4111 4958 1.988293 TCGAGTGCAAAATTTGGGGA 58.012 45.000 7.89 0.00 0.00 4.81
4112 4959 2.311463 TCGAGTGCAAAATTTGGGGAA 58.689 42.857 7.89 0.00 0.00 3.97
4113 4960 2.695666 TCGAGTGCAAAATTTGGGGAAA 59.304 40.909 7.89 0.00 0.00 3.13
4114 4961 3.133003 TCGAGTGCAAAATTTGGGGAAAA 59.867 39.130 7.89 0.00 0.00 2.29
4115 4962 3.873952 CGAGTGCAAAATTTGGGGAAAAA 59.126 39.130 7.89 0.00 0.00 1.94
4166 5015 7.149202 AGATATGCCTATTTCAGTTTACCCA 57.851 36.000 0.00 0.00 0.00 4.51
4233 5144 4.148696 GCTGCGTGTTACTCTTTACGTTTA 59.851 41.667 0.00 0.00 38.67 2.01
4285 5196 4.965814 TCTTGAGAAGTTGCTGAAGTCAT 58.034 39.130 0.00 0.00 32.04 3.06
4434 5345 1.339151 GGTCAGGTCCCTGTGTTGATC 60.339 57.143 12.88 0.00 43.96 2.92
4458 5369 2.436646 GATGTGGCCAGTCGTGGG 60.437 66.667 5.11 0.00 45.17 4.61
4579 5492 8.776376 AAACATTTTGATGAATGTGAATACCC 57.224 30.769 4.23 0.00 46.53 3.69
4675 5588 1.739750 CAGGGGAGGGCTCTCAATAT 58.260 55.000 17.22 0.00 41.69 1.28
4704 5617 0.901580 CCCAGGTTTGCTGAATGCCT 60.902 55.000 0.00 0.00 42.00 4.75
4711 5624 3.255642 GGTTTGCTGAATGCCTGAGTTTA 59.744 43.478 0.00 0.00 42.00 2.01
4733 5647 2.021262 TGATGTTTTCCATGGCCCAA 57.979 45.000 6.96 0.00 32.56 4.12
4766 5680 7.301868 TGCCCTCTTGTATTTGAAAGAAAAT 57.698 32.000 0.00 0.00 32.23 1.82
4767 5681 7.378181 TGCCCTCTTGTATTTGAAAGAAAATC 58.622 34.615 0.00 0.00 32.23 2.17
4769 5683 7.029563 CCCTCTTGTATTTGAAAGAAAATCCG 58.970 38.462 0.00 0.00 32.23 4.18
4777 5692 5.432885 TTGAAAGAAAATCCGACCTTCAC 57.567 39.130 0.00 0.00 0.00 3.18
4799 5714 3.192422 CGAGTCTTCTCCTCATGTCAACT 59.808 47.826 0.00 0.00 37.40 3.16
4801 5716 5.106118 CGAGTCTTCTCCTCATGTCAACTTA 60.106 44.000 0.00 0.00 37.40 2.24
4805 5720 7.180051 AGTCTTCTCCTCATGTCAACTTAGATT 59.820 37.037 0.00 0.00 0.00 2.40
4835 5750 2.288666 TCCAGCCGATTGCAATTCTAC 58.711 47.619 14.33 4.11 44.83 2.59
4846 5761 5.733226 TTGCAATTCTACATGTACCGATG 57.267 39.130 0.08 0.98 0.00 3.84
4941 5863 2.656947 TGGCAGAAGCAACTAACCTT 57.343 45.000 0.00 0.00 44.61 3.50
4976 5998 1.896220 ATCAGAAACCGCTCTTTGCA 58.104 45.000 0.00 0.00 43.06 4.08
4989 6011 5.287035 CCGCTCTTTGCAAGTTATGAATTTC 59.713 40.000 0.00 0.00 43.06 2.17
5010 6032 6.419484 TTCACCTCACAGAAATCACTCTTA 57.581 37.500 0.00 0.00 0.00 2.10
5046 6068 4.717279 TTTACCTACCAGTTGGCTCTTT 57.283 40.909 0.00 0.00 39.32 2.52
5058 6080 6.258160 CAGTTGGCTCTTTTATATGGAAACG 58.742 40.000 0.00 0.00 0.00 3.60
5064 6086 6.238293 GGCTCTTTTATATGGAAACGTGTACC 60.238 42.308 0.00 0.00 0.00 3.34
5065 6087 6.238293 GCTCTTTTATATGGAAACGTGTACCC 60.238 42.308 0.00 0.00 0.00 3.69
5066 6088 6.114767 TCTTTTATATGGAAACGTGTACCCC 58.885 40.000 0.00 0.00 0.00 4.95
5067 6089 4.420522 TTATATGGAAACGTGTACCCCC 57.579 45.455 0.00 0.00 0.00 5.40
5068 6090 0.536260 TATGGAAACGTGTACCCCCG 59.464 55.000 0.00 0.00 0.00 5.73
5069 6091 2.743538 GGAAACGTGTACCCCCGC 60.744 66.667 0.00 0.00 0.00 6.13
5070 6092 2.344872 GAAACGTGTACCCCCGCT 59.655 61.111 0.00 0.00 0.00 5.52
5071 6093 2.030958 GAAACGTGTACCCCCGCTG 61.031 63.158 0.00 0.00 0.00 5.18
5072 6094 2.720358 GAAACGTGTACCCCCGCTGT 62.720 60.000 0.00 0.00 0.00 4.40
5073 6095 2.720358 AAACGTGTACCCCCGCTGTC 62.720 60.000 0.00 0.00 0.00 3.51
5074 6096 4.446413 CGTGTACCCCCGCTGTCC 62.446 72.222 0.00 0.00 0.00 4.02
5075 6097 4.446413 GTGTACCCCCGCTGTCCG 62.446 72.222 0.00 0.00 0.00 4.79
5086 6108 1.722011 CGCTGTCCGGAATTAACTGT 58.278 50.000 5.23 0.00 0.00 3.55
5087 6109 1.659098 CGCTGTCCGGAATTAACTGTC 59.341 52.381 5.23 0.00 0.00 3.51
5088 6110 1.659098 GCTGTCCGGAATTAACTGTCG 59.341 52.381 5.23 0.00 0.00 4.35
5089 6111 1.659098 CTGTCCGGAATTAACTGTCGC 59.341 52.381 5.23 0.00 0.00 5.19
5090 6112 1.274167 TGTCCGGAATTAACTGTCGCT 59.726 47.619 5.23 0.00 0.00 4.93
5091 6113 1.659098 GTCCGGAATTAACTGTCGCTG 59.341 52.381 5.23 0.00 0.00 5.18
5092 6114 1.546923 TCCGGAATTAACTGTCGCTGA 59.453 47.619 0.00 0.00 0.00 4.26
5093 6115 2.028839 TCCGGAATTAACTGTCGCTGAA 60.029 45.455 0.00 0.00 0.00 3.02
5094 6116 2.739913 CCGGAATTAACTGTCGCTGAAA 59.260 45.455 0.00 0.00 0.00 2.69
5095 6117 3.374058 CCGGAATTAACTGTCGCTGAAAT 59.626 43.478 0.00 0.00 0.00 2.17
5096 6118 4.334443 CGGAATTAACTGTCGCTGAAATG 58.666 43.478 0.00 0.00 0.00 2.32
5097 6119 4.092821 CGGAATTAACTGTCGCTGAAATGA 59.907 41.667 0.00 0.00 0.00 2.57
5098 6120 5.563842 GGAATTAACTGTCGCTGAAATGAG 58.436 41.667 0.00 0.00 0.00 2.90
5099 6121 5.122396 GGAATTAACTGTCGCTGAAATGAGT 59.878 40.000 0.00 0.00 0.00 3.41
5100 6122 4.990543 TTAACTGTCGCTGAAATGAGTG 57.009 40.909 0.00 0.00 0.00 3.51
5101 6123 2.820059 ACTGTCGCTGAAATGAGTGA 57.180 45.000 0.00 0.00 0.00 3.41
5102 6124 3.111853 ACTGTCGCTGAAATGAGTGAA 57.888 42.857 0.00 0.00 34.31 3.18
5103 6125 3.668447 ACTGTCGCTGAAATGAGTGAAT 58.332 40.909 0.00 0.00 34.31 2.57
5104 6126 3.681897 ACTGTCGCTGAAATGAGTGAATC 59.318 43.478 0.00 0.00 34.31 2.52
5105 6127 3.930336 TGTCGCTGAAATGAGTGAATCT 58.070 40.909 0.00 0.00 34.31 2.40
5106 6128 5.072040 TGTCGCTGAAATGAGTGAATCTA 57.928 39.130 0.00 0.00 34.31 1.98
5107 6129 4.864806 TGTCGCTGAAATGAGTGAATCTAC 59.135 41.667 0.00 0.00 34.31 2.59
5108 6130 4.864806 GTCGCTGAAATGAGTGAATCTACA 59.135 41.667 0.00 0.00 34.31 2.74
5109 6131 4.864806 TCGCTGAAATGAGTGAATCTACAC 59.135 41.667 0.00 0.00 40.60 2.90
5110 6132 4.627035 CGCTGAAATGAGTGAATCTACACA 59.373 41.667 0.00 0.00 42.45 3.72
5111 6133 5.445142 CGCTGAAATGAGTGAATCTACACAC 60.445 44.000 0.00 0.00 42.45 3.82
5113 6135 6.401903 GCTGAAATGAGTGAATCTACACACTG 60.402 42.308 0.00 0.00 45.54 3.66
5114 6136 6.758254 TGAAATGAGTGAATCTACACACTGA 58.242 36.000 0.00 0.00 45.54 3.41
5115 6137 7.216494 TGAAATGAGTGAATCTACACACTGAA 58.784 34.615 0.00 0.00 45.54 3.02
5116 6138 7.714813 TGAAATGAGTGAATCTACACACTGAAA 59.285 33.333 0.00 0.00 45.54 2.69
5117 6139 7.426929 AATGAGTGAATCTACACACTGAAAC 57.573 36.000 0.00 0.00 45.54 2.78
5118 6140 4.982295 TGAGTGAATCTACACACTGAAACG 59.018 41.667 0.00 0.00 45.54 3.60
5119 6141 4.945246 AGTGAATCTACACACTGAAACGT 58.055 39.130 0.00 0.00 44.18 3.99
5120 6142 4.745125 AGTGAATCTACACACTGAAACGTG 59.255 41.667 0.00 0.00 44.18 4.49
5122 6144 4.743151 TGAATCTACACACTGAAACGTGTC 59.257 41.667 0.00 0.00 45.74 3.67
5123 6145 4.585955 ATCTACACACTGAAACGTGTCT 57.414 40.909 7.37 0.00 45.74 3.41
5124 6146 5.700722 ATCTACACACTGAAACGTGTCTA 57.299 39.130 7.37 0.00 45.74 2.59
5125 6147 5.104562 TCTACACACTGAAACGTGTCTAG 57.895 43.478 7.37 5.56 45.74 2.43
5126 6148 4.818005 TCTACACACTGAAACGTGTCTAGA 59.182 41.667 7.37 1.87 45.74 2.43
5127 6149 4.585955 ACACACTGAAACGTGTCTAGAT 57.414 40.909 7.37 0.00 45.74 1.98
5128 6150 5.700722 ACACACTGAAACGTGTCTAGATA 57.299 39.130 7.37 0.00 45.74 1.98
5129 6151 5.458891 ACACACTGAAACGTGTCTAGATAC 58.541 41.667 7.37 9.46 45.74 2.24
5130 6152 5.009310 ACACACTGAAACGTGTCTAGATACA 59.991 40.000 18.39 0.27 45.74 2.29
5131 6153 5.342525 CACACTGAAACGTGTCTAGATACAC 59.657 44.000 18.39 11.67 45.74 2.90
5132 6154 5.241064 ACACTGAAACGTGTCTAGATACACT 59.759 40.000 18.39 2.97 44.32 3.55
5133 6155 5.795939 CACTGAAACGTGTCTAGATACACTC 59.204 44.000 18.39 11.51 46.13 3.51
5134 6156 5.472478 ACTGAAACGTGTCTAGATACACTCA 59.528 40.000 18.39 14.71 46.13 3.41
5135 6157 6.151312 ACTGAAACGTGTCTAGATACACTCAT 59.849 38.462 18.39 1.17 46.13 2.90
5136 6158 6.920817 TGAAACGTGTCTAGATACACTCATT 58.079 36.000 18.39 7.89 46.13 2.57
5137 6159 7.375834 TGAAACGTGTCTAGATACACTCATTT 58.624 34.615 18.39 12.05 46.13 2.32
5138 6160 7.541091 TGAAACGTGTCTAGATACACTCATTTC 59.459 37.037 18.39 17.99 46.13 2.17
5139 6161 6.510879 ACGTGTCTAGATACACTCATTTCA 57.489 37.500 18.39 0.00 46.13 2.69
5140 6162 6.556212 ACGTGTCTAGATACACTCATTTCAG 58.444 40.000 18.39 2.19 46.13 3.02
5141 6163 5.457148 CGTGTCTAGATACACTCATTTCAGC 59.543 44.000 18.39 0.00 46.13 4.26
5142 6164 5.457148 GTGTCTAGATACACTCATTTCAGCG 59.543 44.000 14.20 0.00 45.12 5.18
5143 6165 5.357032 TGTCTAGATACACTCATTTCAGCGA 59.643 40.000 0.00 0.00 0.00 4.93
5144 6166 5.683743 GTCTAGATACACTCATTTCAGCGAC 59.316 44.000 0.00 0.00 0.00 5.19
5145 6167 4.456280 AGATACACTCATTTCAGCGACA 57.544 40.909 0.00 0.00 0.00 4.35
5146 6168 4.428209 AGATACACTCATTTCAGCGACAG 58.572 43.478 0.00 0.00 0.00 3.51
5147 6169 2.533266 ACACTCATTTCAGCGACAGT 57.467 45.000 0.00 0.00 0.00 3.55
5148 6170 2.838736 ACACTCATTTCAGCGACAGTT 58.161 42.857 0.00 0.00 0.00 3.16
5149 6171 3.990092 ACACTCATTTCAGCGACAGTTA 58.010 40.909 0.00 0.00 0.00 2.24
5150 6172 4.377021 ACACTCATTTCAGCGACAGTTAA 58.623 39.130 0.00 0.00 0.00 2.01
5151 6173 4.997395 ACACTCATTTCAGCGACAGTTAAT 59.003 37.500 0.00 0.00 0.00 1.40
5152 6174 5.470098 ACACTCATTTCAGCGACAGTTAATT 59.530 36.000 0.00 0.00 0.00 1.40
5153 6175 6.017933 CACTCATTTCAGCGACAGTTAATTC 58.982 40.000 0.00 0.00 0.00 2.17
5154 6176 5.122396 ACTCATTTCAGCGACAGTTAATTCC 59.878 40.000 0.00 0.00 0.00 3.01
5155 6177 4.092821 TCATTTCAGCGACAGTTAATTCCG 59.907 41.667 0.00 0.00 0.00 4.30
5156 6178 2.004583 TCAGCGACAGTTAATTCCGG 57.995 50.000 0.00 0.00 0.00 5.14
5157 6179 1.546923 TCAGCGACAGTTAATTCCGGA 59.453 47.619 0.00 0.00 0.00 5.14
5158 6180 2.167693 TCAGCGACAGTTAATTCCGGAT 59.832 45.455 4.15 0.00 0.00 4.18
5159 6181 2.285220 CAGCGACAGTTAATTCCGGATG 59.715 50.000 4.15 0.97 0.00 3.51
5160 6182 1.597663 GCGACAGTTAATTCCGGATGG 59.402 52.381 4.15 0.00 0.00 3.51
5161 6183 2.740580 GCGACAGTTAATTCCGGATGGA 60.741 50.000 4.15 0.00 44.61 3.41
5208 6230 5.073311 TCAGAAATGTACACAGTAGGAGC 57.927 43.478 0.00 0.00 0.00 4.70
5228 6250 4.737054 AGCGCACCAAATTTTCTTATGAG 58.263 39.130 11.47 0.00 0.00 2.90
5231 6253 5.619981 GCGCACCAAATTTTCTTATGAGACT 60.620 40.000 0.30 0.00 0.00 3.24
5244 6266 6.993079 TCTTATGAGACTGTGCTCTTGTTTA 58.007 36.000 0.00 0.00 35.91 2.01
5255 6277 5.022021 GTGCTCTTGTTTACATGCGTTATC 58.978 41.667 0.00 0.00 0.00 1.75
5258 6280 5.960105 GCTCTTGTTTACATGCGTTATCTTC 59.040 40.000 0.00 0.00 0.00 2.87
5265 6287 8.600625 TGTTTACATGCGTTATCTTCACTTATC 58.399 33.333 0.00 0.00 0.00 1.75
5273 6295 7.011389 TGCGTTATCTTCACTTATCAATTCCTG 59.989 37.037 0.00 0.00 0.00 3.86
5370 6393 2.959030 TGAGATAGAAGATGACGTGGGG 59.041 50.000 0.00 0.00 0.00 4.96
5464 6487 3.016031 TCATGTTTTGTGCATATCGCCT 58.984 40.909 0.00 0.00 41.33 5.52
5506 6534 1.140816 GTCTTGCGTCTGGACAGTTC 58.859 55.000 0.00 0.00 0.00 3.01
5507 6535 0.318699 TCTTGCGTCTGGACAGTTCG 60.319 55.000 12.32 12.32 0.00 3.95
5531 6559 2.832733 GCTGAACCTGTTCTAGTACCCT 59.167 50.000 11.03 0.00 40.14 4.34
5534 6562 4.021916 TGAACCTGTTCTAGTACCCTAGC 58.978 47.826 11.03 0.00 40.51 3.42
5547 6575 6.223351 AGTACCCTAGCTTATGACAAAGAC 57.777 41.667 0.00 0.00 0.00 3.01
5558 6586 7.663081 AGCTTATGACAAAGACATTTCTTCTGA 59.337 33.333 0.00 0.00 41.56 3.27
5566 6594 8.616076 ACAAAGACATTTCTTCTGACAACTAAG 58.384 33.333 0.00 0.00 41.56 2.18
5570 6598 9.832445 AGACATTTCTTCTGACAACTAAGTTTA 57.168 29.630 0.00 0.00 0.00 2.01
5726 6755 1.001597 ACGACGAGTGAAGTGAACCTC 60.002 52.381 0.00 0.00 0.00 3.85
5729 6758 1.009389 CGAGTGAAGTGAACCTCGCC 61.009 60.000 0.00 0.00 40.12 5.54
5730 6759 0.033504 GAGTGAAGTGAACCTCGCCA 59.966 55.000 0.00 0.00 0.00 5.69
5747 6777 0.678395 CCATAGAGATGGCTCACGCT 59.322 55.000 0.00 0.00 46.30 5.07
5750 6780 3.243873 CCATAGAGATGGCTCACGCTTTA 60.244 47.826 0.00 0.00 46.30 1.85
5786 6817 1.997874 GGACTGTGCCCCCTCTCAT 60.998 63.158 0.00 0.00 0.00 2.90
5796 6827 2.417516 CCTCTCATACACCGGGCG 59.582 66.667 6.32 0.00 0.00 6.13
5958 6994 4.135306 CCTCGACTAACCTCAGTATGCTA 58.865 47.826 0.00 0.00 34.76 3.49
5962 6998 4.762765 CGACTAACCTCAGTATGCTATCCT 59.237 45.833 0.00 0.00 34.76 3.24
5965 7001 7.769507 CGACTAACCTCAGTATGCTATCCTATA 59.230 40.741 0.00 0.00 34.76 1.31
5967 7003 9.998752 ACTAACCTCAGTATGCTATCCTATATT 57.001 33.333 0.00 0.00 34.76 1.28
6027 7063 0.438830 GCGGTGCTGTTTCTAACTCG 59.561 55.000 0.00 0.00 0.00 4.18
6035 7071 4.142838 TGCTGTTTCTAACTCGCATGATTG 60.143 41.667 0.00 0.00 35.01 2.67
6285 7327 1.868997 CCGCAACAACTCGCTGATT 59.131 52.632 0.00 0.00 0.00 2.57
6290 7332 2.224079 GCAACAACTCGCTGATTGAAGA 59.776 45.455 0.00 0.00 0.00 2.87
6294 7336 4.380531 ACAACTCGCTGATTGAAGAAGAA 58.619 39.130 0.00 0.00 0.00 2.52
6295 7337 4.450419 ACAACTCGCTGATTGAAGAAGAAG 59.550 41.667 0.00 0.00 0.00 2.85
6297 7339 4.241681 ACTCGCTGATTGAAGAAGAAGTC 58.758 43.478 0.00 0.00 0.00 3.01
6298 7340 3.589988 TCGCTGATTGAAGAAGAAGTCC 58.410 45.455 0.00 0.00 0.00 3.85
6299 7341 2.675348 CGCTGATTGAAGAAGAAGTCCC 59.325 50.000 0.00 0.00 0.00 4.46
6301 7343 3.938334 GCTGATTGAAGAAGAAGTCCCTC 59.062 47.826 0.00 0.00 0.00 4.30
6302 7344 4.564406 GCTGATTGAAGAAGAAGTCCCTCA 60.564 45.833 0.00 0.00 0.00 3.86
6303 7345 5.555017 CTGATTGAAGAAGAAGTCCCTCAA 58.445 41.667 0.00 0.00 34.65 3.02
6304 7346 5.940617 TGATTGAAGAAGAAGTCCCTCAAA 58.059 37.500 0.00 0.00 34.14 2.69
6305 7347 6.364701 TGATTGAAGAAGAAGTCCCTCAAAA 58.635 36.000 0.00 0.00 34.14 2.44
6306 7348 6.833416 TGATTGAAGAAGAAGTCCCTCAAAAA 59.167 34.615 0.00 0.00 34.14 1.94
6339 7383 2.949177 TTCTTAAGGCAGGCTGAACA 57.051 45.000 20.86 0.00 0.00 3.18
6429 7473 2.693074 CAAACCCAACACAGCCTACTTT 59.307 45.455 0.00 0.00 0.00 2.66
6557 8880 0.390860 AGCTGGGCTACATAAGAGCG 59.609 55.000 0.00 0.00 41.06 5.03
6564 8887 1.134491 GCTACATAAGAGCGGGTGGTT 60.134 52.381 0.00 0.00 0.00 3.67
6566 8889 1.276622 ACATAAGAGCGGGTGGTTCT 58.723 50.000 0.00 0.00 37.90 3.01
6570 8894 4.373116 GAGCGGGTGGTTCTGCGA 62.373 66.667 0.00 0.00 43.39 5.10
6576 8900 0.804989 GGGTGGTTCTGCGATGAAAG 59.195 55.000 0.00 0.00 0.00 2.62
6578 8902 1.523758 GTGGTTCTGCGATGAAAGGT 58.476 50.000 0.00 0.00 0.00 3.50
6666 8990 1.668419 CCACACTAAGCAGCATACCC 58.332 55.000 0.00 0.00 0.00 3.69
6675 8999 6.974622 CACTAAGCAGCATACCCTAATTTTTG 59.025 38.462 0.00 0.00 0.00 2.44
6708 9032 2.352805 CTGTGAGAAGGCCCCACC 59.647 66.667 0.00 0.00 39.61 4.61
6709 9033 2.449518 TGTGAGAAGGCCCCACCA 60.450 61.111 0.00 0.00 43.14 4.17
6710 9034 2.067932 CTGTGAGAAGGCCCCACCAA 62.068 60.000 0.00 0.00 43.14 3.67
6711 9035 1.384191 GTGAGAAGGCCCCACCAAT 59.616 57.895 0.00 0.00 43.14 3.16
6712 9036 0.251787 GTGAGAAGGCCCCACCAATT 60.252 55.000 0.00 0.00 43.14 2.32
6713 9037 0.039618 TGAGAAGGCCCCACCAATTC 59.960 55.000 0.00 0.00 43.14 2.17
6714 9038 0.332972 GAGAAGGCCCCACCAATTCT 59.667 55.000 0.00 0.00 43.14 2.40
6715 9039 1.564348 GAGAAGGCCCCACCAATTCTA 59.436 52.381 0.00 0.00 43.14 2.10
6716 9040 2.000048 AGAAGGCCCCACCAATTCTAA 59.000 47.619 0.00 0.00 43.14 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
510 512 4.441079 CCCGATTTGACCGTACACTAATCT 60.441 45.833 0.00 0.00 0.00 2.40
579 581 9.388506 CTTGATAGCCCGAGATCATTTAATTAT 57.611 33.333 0.00 0.00 32.27 1.28
580 582 7.334421 GCTTGATAGCCCGAGATCATTTAATTA 59.666 37.037 0.00 0.00 41.74 1.40
581 583 6.150140 GCTTGATAGCCCGAGATCATTTAATT 59.850 38.462 0.00 0.00 41.74 1.40
582 584 5.645497 GCTTGATAGCCCGAGATCATTTAAT 59.355 40.000 0.00 0.00 41.74 1.40
583 585 4.997395 GCTTGATAGCCCGAGATCATTTAA 59.003 41.667 0.00 0.00 41.74 1.52
584 586 4.569943 GCTTGATAGCCCGAGATCATTTA 58.430 43.478 0.00 0.00 41.74 1.40
585 587 3.406764 GCTTGATAGCCCGAGATCATTT 58.593 45.455 0.00 0.00 41.74 2.32
586 588 3.051081 GCTTGATAGCCCGAGATCATT 57.949 47.619 0.00 0.00 41.74 2.57
587 589 2.758736 GCTTGATAGCCCGAGATCAT 57.241 50.000 0.00 0.00 41.74 2.45
598 600 4.569029 CTCGCACGTTTTTAGCTTGATAG 58.431 43.478 0.00 0.00 0.00 2.08
599 601 3.181524 GCTCGCACGTTTTTAGCTTGATA 60.182 43.478 0.00 0.00 0.00 2.15
600 602 2.412847 GCTCGCACGTTTTTAGCTTGAT 60.413 45.455 0.00 0.00 0.00 2.57
601 603 1.070175 GCTCGCACGTTTTTAGCTTGA 60.070 47.619 0.00 0.00 0.00 3.02
602 604 1.069906 AGCTCGCACGTTTTTAGCTTG 60.070 47.619 0.00 0.00 40.52 4.01
603 605 1.069906 CAGCTCGCACGTTTTTAGCTT 60.070 47.619 8.34 0.00 41.44 3.74
604 606 0.512952 CAGCTCGCACGTTTTTAGCT 59.487 50.000 5.81 5.81 44.08 3.32
605 607 0.452784 CCAGCTCGCACGTTTTTAGC 60.453 55.000 0.00 0.00 0.00 3.09
606 608 0.865769 ACCAGCTCGCACGTTTTTAG 59.134 50.000 0.00 0.00 0.00 1.85
607 609 0.584396 CACCAGCTCGCACGTTTTTA 59.416 50.000 0.00 0.00 0.00 1.52
608 610 1.355210 CACCAGCTCGCACGTTTTT 59.645 52.632 0.00 0.00 0.00 1.94
609 611 1.373590 AACACCAGCTCGCACGTTTT 61.374 50.000 0.00 0.00 0.00 2.43
610 612 1.817941 AACACCAGCTCGCACGTTT 60.818 52.632 0.00 0.00 0.00 3.60
611 613 2.203015 AACACCAGCTCGCACGTT 60.203 55.556 0.00 0.00 0.00 3.99
612 614 2.967076 CAACACCAGCTCGCACGT 60.967 61.111 0.00 0.00 0.00 4.49
613 615 3.716006 CCAACACCAGCTCGCACG 61.716 66.667 0.00 0.00 0.00 5.34
614 616 4.030452 GCCAACACCAGCTCGCAC 62.030 66.667 0.00 0.00 0.00 5.34
615 617 4.254709 AGCCAACACCAGCTCGCA 62.255 61.111 0.00 0.00 32.71 5.10
616 618 3.426568 GAGCCAACACCAGCTCGC 61.427 66.667 0.00 0.00 45.44 5.03
619 621 0.403271 ATCTTGAGCCAACACCAGCT 59.597 50.000 0.00 0.00 43.55 4.24
620 622 0.807496 GATCTTGAGCCAACACCAGC 59.193 55.000 0.00 0.00 0.00 4.85
621 623 2.189594 TGATCTTGAGCCAACACCAG 57.810 50.000 0.00 0.00 0.00 4.00
622 624 2.158623 AGTTGATCTTGAGCCAACACCA 60.159 45.455 15.62 0.00 41.72 4.17
623 625 2.485814 GAGTTGATCTTGAGCCAACACC 59.514 50.000 15.62 7.67 41.72 4.16
624 626 3.141398 TGAGTTGATCTTGAGCCAACAC 58.859 45.455 15.62 11.87 41.72 3.32
625 627 3.490439 TGAGTTGATCTTGAGCCAACA 57.510 42.857 15.62 0.00 41.72 3.33
626 628 5.182760 AGAAATGAGTTGATCTTGAGCCAAC 59.817 40.000 0.00 0.00 40.14 3.77
627 629 5.319453 AGAAATGAGTTGATCTTGAGCCAA 58.681 37.500 0.00 0.00 0.00 4.52
628 630 4.914983 AGAAATGAGTTGATCTTGAGCCA 58.085 39.130 0.00 0.00 0.00 4.75
629 631 4.033817 CGAGAAATGAGTTGATCTTGAGCC 59.966 45.833 0.00 0.00 0.00 4.70
630 632 4.867047 TCGAGAAATGAGTTGATCTTGAGC 59.133 41.667 0.00 0.00 30.64 4.26
631 633 6.074941 CGATCGAGAAATGAGTTGATCTTGAG 60.075 42.308 10.26 0.00 36.15 3.02
632 634 5.745769 CGATCGAGAAATGAGTTGATCTTGA 59.254 40.000 10.26 0.00 36.89 3.02
633 635 5.745769 TCGATCGAGAAATGAGTTGATCTTG 59.254 40.000 15.15 0.00 32.17 3.02
634 636 5.895928 TCGATCGAGAAATGAGTTGATCTT 58.104 37.500 15.15 0.00 32.17 2.40
635 637 5.506686 TCGATCGAGAAATGAGTTGATCT 57.493 39.130 15.15 0.00 32.17 2.75
636 638 4.148000 GCTCGATCGAGAAATGAGTTGATC 59.852 45.833 41.45 19.33 44.53 2.92
637 639 4.047822 GCTCGATCGAGAAATGAGTTGAT 58.952 43.478 41.45 0.00 44.53 2.57
638 640 3.129462 AGCTCGATCGAGAAATGAGTTGA 59.871 43.478 41.45 6.72 44.53 3.18
639 641 3.443037 AGCTCGATCGAGAAATGAGTTG 58.557 45.455 41.45 17.66 44.53 3.16
640 642 3.791973 AGCTCGATCGAGAAATGAGTT 57.208 42.857 41.45 14.72 44.53 3.01
641 643 3.628032 TGTAGCTCGATCGAGAAATGAGT 59.372 43.478 41.45 20.66 44.53 3.41
642 644 4.216366 TGTAGCTCGATCGAGAAATGAG 57.784 45.455 41.45 19.75 44.53 2.90
643 645 4.837896 ATGTAGCTCGATCGAGAAATGA 57.162 40.909 41.45 23.28 44.53 2.57
644 646 6.993175 TTTATGTAGCTCGATCGAGAAATG 57.007 37.500 41.45 21.15 44.53 2.32
645 647 7.653713 ACATTTTATGTAGCTCGATCGAGAAAT 59.346 33.333 41.45 30.77 42.28 2.17
646 648 6.978659 ACATTTTATGTAGCTCGATCGAGAAA 59.021 34.615 41.45 30.12 42.28 2.52
647 649 6.504398 ACATTTTATGTAGCTCGATCGAGAA 58.496 36.000 41.45 27.74 42.28 2.87
648 650 6.073327 ACATTTTATGTAGCTCGATCGAGA 57.927 37.500 41.45 24.90 42.28 4.04
649 651 6.417930 TGAACATTTTATGTAGCTCGATCGAG 59.582 38.462 35.25 35.25 44.07 4.04
650 652 6.270064 TGAACATTTTATGTAGCTCGATCGA 58.730 36.000 18.32 18.32 44.07 3.59
651 653 6.510746 TGAACATTTTATGTAGCTCGATCG 57.489 37.500 9.36 9.36 44.07 3.69
652 654 8.391106 AGTTTGAACATTTTATGTAGCTCGATC 58.609 33.333 0.00 0.00 44.07 3.69
653 655 8.268850 AGTTTGAACATTTTATGTAGCTCGAT 57.731 30.769 0.00 0.00 44.07 3.59
654 656 7.386573 TGAGTTTGAACATTTTATGTAGCTCGA 59.613 33.333 0.00 0.00 44.07 4.04
655 657 7.518161 TGAGTTTGAACATTTTATGTAGCTCG 58.482 34.615 0.00 0.00 44.07 5.03
656 658 7.483059 GCTGAGTTTGAACATTTTATGTAGCTC 59.517 37.037 0.00 0.00 44.07 4.09
657 659 7.175641 AGCTGAGTTTGAACATTTTATGTAGCT 59.824 33.333 0.00 0.00 44.07 3.32
658 660 7.308435 AGCTGAGTTTGAACATTTTATGTAGC 58.692 34.615 0.00 0.00 44.07 3.58
659 661 8.506437 TGAGCTGAGTTTGAACATTTTATGTAG 58.494 33.333 0.00 0.00 44.07 2.74
660 662 8.389779 TGAGCTGAGTTTGAACATTTTATGTA 57.610 30.769 0.00 0.00 44.07 2.29
662 664 8.752766 AATGAGCTGAGTTTGAACATTTTATG 57.247 30.769 0.00 0.00 0.00 1.90
663 665 9.415544 GAAATGAGCTGAGTTTGAACATTTTAT 57.584 29.630 0.00 0.00 36.87 1.40
664 666 8.632679 AGAAATGAGCTGAGTTTGAACATTTTA 58.367 29.630 0.00 0.00 36.87 1.52
665 667 7.495055 AGAAATGAGCTGAGTTTGAACATTTT 58.505 30.769 0.00 0.00 36.87 1.82
666 668 7.047460 AGAAATGAGCTGAGTTTGAACATTT 57.953 32.000 0.00 0.00 38.55 2.32
667 669 6.645790 AGAAATGAGCTGAGTTTGAACATT 57.354 33.333 0.00 0.00 0.00 2.71
668 670 6.645790 AAGAAATGAGCTGAGTTTGAACAT 57.354 33.333 0.00 0.00 0.00 2.71
669 671 6.455360 AAAGAAATGAGCTGAGTTTGAACA 57.545 33.333 0.00 0.00 0.00 3.18
670 672 7.489113 TCAAAAAGAAATGAGCTGAGTTTGAAC 59.511 33.333 0.00 0.00 31.51 3.18
671 673 7.546358 TCAAAAAGAAATGAGCTGAGTTTGAA 58.454 30.769 0.00 0.00 31.51 2.69
672 674 7.099266 TCAAAAAGAAATGAGCTGAGTTTGA 57.901 32.000 0.00 0.00 31.87 2.69
673 675 6.976925 ACTCAAAAAGAAATGAGCTGAGTTTG 59.023 34.615 0.00 0.00 45.50 2.93
674 676 6.976925 CACTCAAAAAGAAATGAGCTGAGTTT 59.023 34.615 0.00 0.00 45.50 2.66
675 677 6.319658 TCACTCAAAAAGAAATGAGCTGAGTT 59.680 34.615 0.00 0.00 45.50 3.01
676 678 5.824624 TCACTCAAAAAGAAATGAGCTGAGT 59.175 36.000 0.00 0.00 45.50 3.41
677 679 6.309712 TCACTCAAAAAGAAATGAGCTGAG 57.690 37.500 0.00 0.00 45.50 3.35
678 680 6.698008 TTCACTCAAAAAGAAATGAGCTGA 57.302 33.333 0.00 0.00 45.50 4.26
679 681 7.368833 AGATTCACTCAAAAAGAAATGAGCTG 58.631 34.615 0.00 2.07 45.50 4.24
680 682 7.521871 AGATTCACTCAAAAAGAAATGAGCT 57.478 32.000 2.86 0.00 45.50 4.09
681 683 7.793907 GAGATTCACTCAAAAAGAAATGAGC 57.206 36.000 2.86 0.00 45.50 4.26
695 697 5.633830 TTGGCTTGATTTGAGATTCACTC 57.366 39.130 0.00 0.00 45.11 3.51
696 698 6.409524 TTTTGGCTTGATTTGAGATTCACT 57.590 33.333 0.00 0.00 0.00 3.41
697 699 7.008628 CGTATTTTGGCTTGATTTGAGATTCAC 59.991 37.037 0.00 0.00 0.00 3.18
698 700 7.028962 CGTATTTTGGCTTGATTTGAGATTCA 58.971 34.615 0.00 0.00 0.00 2.57
699 701 7.250569 TCGTATTTTGGCTTGATTTGAGATTC 58.749 34.615 0.00 0.00 0.00 2.52
700 702 7.094205 ACTCGTATTTTGGCTTGATTTGAGATT 60.094 33.333 0.00 0.00 0.00 2.40
701 703 6.375455 ACTCGTATTTTGGCTTGATTTGAGAT 59.625 34.615 0.00 0.00 0.00 2.75
702 704 5.705441 ACTCGTATTTTGGCTTGATTTGAGA 59.295 36.000 0.00 0.00 0.00 3.27
703 705 5.796935 CACTCGTATTTTGGCTTGATTTGAG 59.203 40.000 0.00 0.00 0.00 3.02
704 706 5.335583 CCACTCGTATTTTGGCTTGATTTGA 60.336 40.000 0.00 0.00 0.00 2.69
705 707 4.858692 CCACTCGTATTTTGGCTTGATTTG 59.141 41.667 0.00 0.00 0.00 2.32
706 708 4.764823 TCCACTCGTATTTTGGCTTGATTT 59.235 37.500 0.00 0.00 0.00 2.17
707 709 4.331968 TCCACTCGTATTTTGGCTTGATT 58.668 39.130 0.00 0.00 0.00 2.57
708 710 3.950397 TCCACTCGTATTTTGGCTTGAT 58.050 40.909 0.00 0.00 0.00 2.57
709 711 3.410631 TCCACTCGTATTTTGGCTTGA 57.589 42.857 0.00 0.00 0.00 3.02
710 712 3.941483 AGATCCACTCGTATTTTGGCTTG 59.059 43.478 0.00 0.00 0.00 4.01
711 713 4.192317 GAGATCCACTCGTATTTTGGCTT 58.808 43.478 0.00 0.00 35.84 4.35
712 714 3.798202 GAGATCCACTCGTATTTTGGCT 58.202 45.455 0.00 0.00 35.84 4.75
723 725 2.941720 GTGAGCCATTTGAGATCCACTC 59.058 50.000 0.00 0.00 45.11 3.51
724 726 2.306805 TGTGAGCCATTTGAGATCCACT 59.693 45.455 0.00 0.00 0.00 4.00
725 727 2.715046 TGTGAGCCATTTGAGATCCAC 58.285 47.619 0.00 0.00 0.00 4.02
726 728 3.438216 TTGTGAGCCATTTGAGATCCA 57.562 42.857 0.00 0.00 0.00 3.41
727 729 3.428589 GCTTTGTGAGCCATTTGAGATCC 60.429 47.826 0.00 0.00 46.01 3.36
728 730 3.767278 GCTTTGTGAGCCATTTGAGATC 58.233 45.455 0.00 0.00 46.01 2.75
729 731 3.863142 GCTTTGTGAGCCATTTGAGAT 57.137 42.857 0.00 0.00 46.01 2.75
744 746 6.253657 CTGCAAGAATAGCTCGAGGCTTTG 62.254 50.000 15.58 12.88 43.47 2.77
745 747 4.234180 CTGCAAGAATAGCTCGAGGCTTT 61.234 47.826 15.58 4.41 43.47 3.51
746 748 2.741228 CTGCAAGAATAGCTCGAGGCTT 60.741 50.000 15.58 0.00 43.47 4.35
747 749 1.202510 CTGCAAGAATAGCTCGAGGCT 60.203 52.381 15.58 13.94 46.70 4.58
748 750 1.216122 CTGCAAGAATAGCTCGAGGC 58.784 55.000 15.58 6.83 37.39 4.70
749 751 1.216122 GCTGCAAGAATAGCTCGAGG 58.784 55.000 15.58 0.00 36.99 4.63
750 752 1.216122 GGCTGCAAGAATAGCTCGAG 58.784 55.000 8.45 8.45 39.80 4.04
751 753 0.179073 GGGCTGCAAGAATAGCTCGA 60.179 55.000 0.50 0.00 39.80 4.04
752 754 0.179062 AGGGCTGCAAGAATAGCTCG 60.179 55.000 0.50 0.00 45.03 5.03
753 755 1.592064 GAGGGCTGCAAGAATAGCTC 58.408 55.000 0.50 0.00 40.73 4.09
754 756 0.182299 GGAGGGCTGCAAGAATAGCT 59.818 55.000 0.50 0.00 39.80 3.32
755 757 1.162800 CGGAGGGCTGCAAGAATAGC 61.163 60.000 0.50 0.00 39.17 2.97
756 758 0.179000 ACGGAGGGCTGCAAGAATAG 59.821 55.000 0.50 0.00 34.07 1.73
757 759 0.618458 AACGGAGGGCTGCAAGAATA 59.382 50.000 0.50 0.00 34.07 1.75
758 760 0.251341 AAACGGAGGGCTGCAAGAAT 60.251 50.000 0.50 0.00 34.07 2.40
759 761 0.398696 TAAACGGAGGGCTGCAAGAA 59.601 50.000 0.50 0.00 34.07 2.52
760 762 0.036388 CTAAACGGAGGGCTGCAAGA 60.036 55.000 0.50 0.00 34.07 3.02
761 763 1.026718 CCTAAACGGAGGGCTGCAAG 61.027 60.000 0.50 0.00 32.39 4.01
762 764 1.002624 CCTAAACGGAGGGCTGCAA 60.003 57.895 0.50 0.00 32.39 4.08
763 765 2.668632 CCTAAACGGAGGGCTGCA 59.331 61.111 0.50 0.00 32.39 4.41
764 766 2.824489 GCCTAAACGGAGGGCTGC 60.824 66.667 0.00 0.00 42.31 5.25
768 770 2.124695 GCAGGCCTAAACGGAGGG 60.125 66.667 3.98 0.00 37.06 4.30
769 771 0.468226 TATGCAGGCCTAAACGGAGG 59.532 55.000 3.98 0.00 39.88 4.30
770 772 2.550830 ATATGCAGGCCTAAACGGAG 57.449 50.000 3.98 0.00 33.16 4.63
771 773 5.950544 ATATATATGCAGGCCTAAACGGA 57.049 39.130 3.98 0.00 33.16 4.69
772 774 8.150945 AGATTATATATATGCAGGCCTAAACGG 58.849 37.037 3.98 0.00 0.00 4.44
773 775 8.982685 CAGATTATATATATGCAGGCCTAAACG 58.017 37.037 3.98 0.00 0.00 3.60
776 778 9.439461 AGTCAGATTATATATATGCAGGCCTAA 57.561 33.333 3.98 0.00 0.00 2.69
777 779 8.864087 CAGTCAGATTATATATATGCAGGCCTA 58.136 37.037 3.98 0.00 0.00 3.93
778 780 7.566509 TCAGTCAGATTATATATATGCAGGCCT 59.433 37.037 0.00 0.00 0.00 5.19
779 781 7.730084 TCAGTCAGATTATATATATGCAGGCC 58.270 38.462 5.44 0.00 0.00 5.19
818 820 0.179161 CTAACCAGCGTCCGTCTGAG 60.179 60.000 11.04 5.80 33.54 3.35
824 826 1.067776 AGAAAGTCTAACCAGCGTCCG 60.068 52.381 0.00 0.00 0.00 4.79
826 828 6.590677 AGAAAATAGAAAGTCTAACCAGCGTC 59.409 38.462 0.00 0.00 31.96 5.19
827 829 6.465084 AGAAAATAGAAAGTCTAACCAGCGT 58.535 36.000 0.00 0.00 31.96 5.07
828 830 6.969828 AGAAAATAGAAAGTCTAACCAGCG 57.030 37.500 0.00 0.00 31.96 5.18
876 882 0.878523 TGGGACGCACAAACTCGAAG 60.879 55.000 0.00 0.00 0.00 3.79
949 958 3.465403 CAGAGGGGTCGAGCAGGG 61.465 72.222 17.59 0.00 0.00 4.45
951 960 4.154347 GGCAGAGGGGTCGAGCAG 62.154 72.222 17.59 1.66 0.00 4.24
1089 1098 1.075896 TTTTGGGGGTTTCGGCTGT 60.076 52.632 0.00 0.00 0.00 4.40
1142 1151 4.180946 CGGAGTCGCCAGAGTCGG 62.181 72.222 0.00 0.00 45.51 4.79
1689 1701 3.222855 CAAACCTTGGTGCGGGCA 61.223 61.111 0.00 0.00 0.00 5.36
1703 1715 5.335348 GCTAAAAGAGTAACCGAATGCCAAA 60.335 40.000 0.00 0.00 0.00 3.28
1910 1928 8.107095 ACCACTATTTACAAGATAACACACCAT 58.893 33.333 0.00 0.00 0.00 3.55
2077 2099 6.344500 CACAAGAAATCTGCTATACCTCAGT 58.656 40.000 0.00 0.00 0.00 3.41
2085 2107 6.404074 GCAGTTAAGCACAAGAAATCTGCTAT 60.404 38.462 0.00 0.00 40.43 2.97
2106 2394 5.287674 AGCATACATCAGACATAAGCAGT 57.712 39.130 0.00 0.00 0.00 4.40
2108 2396 4.346127 AGGAGCATACATCAGACATAAGCA 59.654 41.667 0.00 0.00 0.00 3.91
2110 2398 7.548427 CCATAAGGAGCATACATCAGACATAAG 59.452 40.741 0.00 0.00 36.89 1.73
2111 2399 7.389232 CCATAAGGAGCATACATCAGACATAA 58.611 38.462 0.00 0.00 36.89 1.90
2113 2401 5.280368 CCCATAAGGAGCATACATCAGACAT 60.280 44.000 0.00 0.00 38.24 3.06
2463 3261 2.775890 AGATCGCTCAAATAGGCATGG 58.224 47.619 0.00 0.00 0.00 3.66
2584 3384 2.882927 TGTATCACGGTATCTGCACC 57.117 50.000 0.00 0.00 35.04 5.01
2702 3502 3.239449 TCAGTGGCTGAAGAAACCTAGA 58.761 45.455 0.00 0.00 37.57 2.43
2734 3534 2.433970 GCCCTACTCTTCATCAGCTTCT 59.566 50.000 0.00 0.00 0.00 2.85
2742 3542 1.204941 GTGACGTGCCCTACTCTTCAT 59.795 52.381 0.00 0.00 0.00 2.57
2857 3658 6.115446 GTGGAGGAAATGTGTGATTCAGATA 58.885 40.000 0.00 0.00 29.63 1.98
2900 3735 4.640201 GCAAATGATCTAGGTAACAAGCCA 59.360 41.667 0.00 0.00 41.41 4.75
2924 3759 5.235850 TCACACTACTTTAGGATTTGCCA 57.764 39.130 0.00 0.00 40.02 4.92
2963 3798 9.924650 TCTAACCTAGTTTGTCTTCTAATTGTC 57.075 33.333 0.00 0.00 0.00 3.18
2969 3804 7.511714 ACCCTTTCTAACCTAGTTTGTCTTCTA 59.488 37.037 0.00 0.00 0.00 2.10
2977 3812 6.329460 AGAGTTCACCCTTTCTAACCTAGTTT 59.671 38.462 0.00 0.00 0.00 2.66
2999 3845 3.196469 TCTTGGCTATGGTGAGTTGAGAG 59.804 47.826 0.00 0.00 0.00 3.20
3035 3881 2.592993 CCTCCCAGGTTCCGAAGCA 61.593 63.158 12.65 0.00 0.00 3.91
3044 3890 1.981495 CTCTTTCAGTTCCTCCCAGGT 59.019 52.381 0.00 0.00 36.53 4.00
3061 3907 0.323816 TGAGTGTCGCCTCCATCTCT 60.324 55.000 0.00 0.00 0.00 3.10
3075 3921 3.194329 TGCTCCACTAACAGATCTGAGTG 59.806 47.826 29.27 27.64 36.05 3.51
3106 3952 0.321671 CCGCACTTGAGAGGAAAGGA 59.678 55.000 0.00 0.00 0.00 3.36
3107 3953 0.321671 TCCGCACTTGAGAGGAAAGG 59.678 55.000 0.00 0.00 0.00 3.11
3113 3959 1.447489 CTGGCTCCGCACTTGAGAG 60.447 63.158 0.00 0.00 31.26 3.20
3136 3982 0.617249 CCTCCAGTGCTTCCTCTCCT 60.617 60.000 0.00 0.00 0.00 3.69
3150 3996 2.930019 CCACTGGTGCTCCCTCCA 60.930 66.667 1.59 0.00 33.79 3.86
3151 3997 4.416738 GCCACTGGTGCTCCCTCC 62.417 72.222 1.59 0.00 0.00 4.30
3152 3998 4.767255 CGCCACTGGTGCTCCCTC 62.767 72.222 1.59 0.00 0.00 4.30
3212 4058 1.322538 GGGCCGCATCAACAAGGAAT 61.323 55.000 0.00 0.00 0.00 3.01
3287 4133 2.294078 CGAGGAAGGGTGGCCTTCT 61.294 63.158 3.32 0.00 43.88 2.85
3309 4155 3.788766 GTCACGATGCCACCACGC 61.789 66.667 0.00 0.00 0.00 5.34
3310 4156 2.356913 TGTCACGATGCCACCACG 60.357 61.111 0.00 0.00 0.00 4.94
3319 4165 0.321671 CCCAACCTGAGTGTCACGAT 59.678 55.000 0.00 0.00 0.00 3.73
3320 4166 0.757561 TCCCAACCTGAGTGTCACGA 60.758 55.000 0.00 0.00 0.00 4.35
3325 4171 0.987294 CTCCATCCCAACCTGAGTGT 59.013 55.000 0.00 0.00 0.00 3.55
3360 4206 2.431454 CTCCTCCTTTCTTGCCTTGTC 58.569 52.381 0.00 0.00 0.00 3.18
3363 4209 0.701147 CCCTCCTCCTTTCTTGCCTT 59.299 55.000 0.00 0.00 0.00 4.35
3427 4273 1.549170 GATACACCCCTATACTGGCGG 59.451 57.143 0.00 0.00 0.00 6.13
3429 4275 3.258622 GTGAGATACACCCCTATACTGGC 59.741 52.174 0.00 0.00 43.05 4.85
3481 4328 7.360691 CCAAGATATGTATCTGGCGATTTTCTG 60.361 40.741 3.44 0.00 41.96 3.02
3499 4346 1.991070 CTCCAGATGCCCCCAAGATAT 59.009 52.381 0.00 0.00 0.00 1.63
3508 4355 2.114838 GGATGCCTCCAGATGCCC 59.885 66.667 2.72 0.00 41.64 5.36
3533 4380 5.583854 GCATATCGGAGGTTAGATACGTCTA 59.416 44.000 0.00 0.00 40.61 2.59
3566 4413 2.496070 TCTAGGATGCATGTATACGGCC 59.504 50.000 2.46 0.00 0.00 6.13
3574 4421 7.807977 ATACGAAAAATTCTAGGATGCATGT 57.192 32.000 2.46 0.00 0.00 3.21
3592 4439 5.320549 ACTAGCGGAAGAGAAAATACGAA 57.679 39.130 0.00 0.00 0.00 3.85
3594 4441 6.404712 AAAACTAGCGGAAGAGAAAATACG 57.595 37.500 0.00 0.00 0.00 3.06
3601 4448 5.245526 AGAAACCTAAAACTAGCGGAAGAGA 59.754 40.000 0.00 0.00 0.00 3.10
3617 4464 6.869206 AAGACAGCATACCTTAGAAACCTA 57.131 37.500 0.00 0.00 0.00 3.08
3628 4475 5.355350 ACTGCAATAGAAAAGACAGCATACC 59.645 40.000 0.00 0.00 0.00 2.73
3762 4609 2.034179 TCGCAGATTATCCGACATCGTT 59.966 45.455 0.00 0.00 37.74 3.85
3765 4612 4.103365 AGATCGCAGATTATCCGACATC 57.897 45.455 0.00 0.00 45.12 3.06
3994 4841 9.537192 CCTATTACACGGAACAATGAATAGTTA 57.463 33.333 0.00 0.00 0.00 2.24
4056 4903 5.351465 CAGCATAGTTCTGGTTCACGTAAAT 59.649 40.000 0.00 0.00 0.00 1.40
4064 4911 5.886960 AATCAACAGCATAGTTCTGGTTC 57.113 39.130 0.00 0.00 35.94 3.62
4067 4914 6.017400 ACAAAATCAACAGCATAGTTCTGG 57.983 37.500 0.00 0.00 35.94 3.86
4073 4920 6.303970 CACTCGAAACAAAATCAACAGCATAG 59.696 38.462 0.00 0.00 0.00 2.23
4075 4922 4.977963 CACTCGAAACAAAATCAACAGCAT 59.022 37.500 0.00 0.00 0.00 3.79
4093 4940 2.810439 TTCCCCAAATTTTGCACTCG 57.190 45.000 3.50 0.00 0.00 4.18
4137 4986 9.555727 GTAAACTGAAATAGGCATATCTTGGTA 57.444 33.333 0.00 0.00 0.00 3.25
4138 4987 7.502561 GGTAAACTGAAATAGGCATATCTTGGT 59.497 37.037 0.00 0.00 0.00 3.67
4166 5015 2.042162 AGGGATTGACAATTGCAGGAGT 59.958 45.455 5.05 0.00 0.00 3.85
4242 5153 7.498900 TCAAGAGAGCATTGAACTTTAAACAGA 59.501 33.333 0.00 0.00 33.85 3.41
4434 5345 2.586079 CTGGCCACATCGGTAGCG 60.586 66.667 0.00 8.29 36.97 4.26
4546 5459 7.736880 CACATTCATCAAAATGTTTTAGCAACG 59.263 33.333 0.00 0.00 45.29 4.10
4549 5462 8.883954 TTCACATTCATCAAAATGTTTTAGCA 57.116 26.923 0.00 0.00 45.29 3.49
4554 5467 7.545265 CGGGTATTCACATTCATCAAAATGTTT 59.455 33.333 0.00 0.00 45.29 2.83
4579 5492 2.688507 AGTAACCACAAGCATCAGTCG 58.311 47.619 0.00 0.00 0.00 4.18
4675 5588 1.110442 CAAACCTGGGTCACAAAGCA 58.890 50.000 0.00 0.00 0.00 3.91
4704 5617 6.127647 GCCATGGAAAACATCATCTAAACTCA 60.128 38.462 18.40 0.00 37.84 3.41
4711 5624 2.292389 TGGGCCATGGAAAACATCATCT 60.292 45.455 18.40 0.00 37.84 2.90
4733 5647 8.537728 TCAAATACAAGAGGGCAAATGATAAT 57.462 30.769 0.00 0.00 0.00 1.28
4766 5680 0.879765 GAAGACTCGTGAAGGTCGGA 59.120 55.000 0.00 0.00 37.52 4.55
4767 5681 0.882474 AGAAGACTCGTGAAGGTCGG 59.118 55.000 0.00 0.00 37.52 4.79
4769 5683 2.162809 GAGGAGAAGACTCGTGAAGGTC 59.837 54.545 0.00 0.00 43.44 3.85
4777 5692 3.192422 AGTTGACATGAGGAGAAGACTCG 59.808 47.826 0.00 0.00 43.44 4.18
4799 5714 3.181458 GGCTGGATCCGTTACCAATCTAA 60.181 47.826 7.39 0.00 35.67 2.10
4801 5716 1.141053 GGCTGGATCCGTTACCAATCT 59.859 52.381 7.39 0.00 35.67 2.40
4805 5720 2.897207 CGGCTGGATCCGTTACCA 59.103 61.111 7.39 0.00 44.18 3.25
4856 5771 2.678336 GTTTGTATGGAAAGCTCCTCCG 59.322 50.000 9.62 0.00 42.94 4.63
4941 5863 3.333804 TCTGATAAACGTGCATGCTTGA 58.666 40.909 20.33 0.00 0.00 3.02
4976 5998 8.463930 TTTCTGTGAGGTGAAATTCATAACTT 57.536 30.769 0.00 0.00 0.00 2.66
4989 6011 5.064452 GCATAAGAGTGATTTCTGTGAGGTG 59.936 44.000 0.00 0.00 0.00 4.00
5046 6068 3.181467 CGGGGGTACACGTTTCCATATAA 60.181 47.826 0.00 0.00 0.00 0.98
5058 6080 4.446413 CGGACAGCGGGGGTACAC 62.446 72.222 0.00 0.00 0.00 2.90
5064 6086 1.093496 GTTAATTCCGGACAGCGGGG 61.093 60.000 1.83 0.00 35.36 5.73
5065 6087 0.107848 AGTTAATTCCGGACAGCGGG 60.108 55.000 1.83 0.00 35.92 6.13
5066 6088 1.006832 CAGTTAATTCCGGACAGCGG 58.993 55.000 1.83 0.00 0.00 5.52
5067 6089 1.659098 GACAGTTAATTCCGGACAGCG 59.341 52.381 1.83 0.00 0.00 5.18
5068 6090 1.659098 CGACAGTTAATTCCGGACAGC 59.341 52.381 1.83 0.00 0.00 4.40
5069 6091 1.659098 GCGACAGTTAATTCCGGACAG 59.341 52.381 1.83 0.00 0.00 3.51
5070 6092 1.274167 AGCGACAGTTAATTCCGGACA 59.726 47.619 1.83 0.00 0.00 4.02
5071 6093 1.659098 CAGCGACAGTTAATTCCGGAC 59.341 52.381 1.83 0.00 0.00 4.79
5072 6094 1.546923 TCAGCGACAGTTAATTCCGGA 59.453 47.619 0.00 0.00 0.00 5.14
5073 6095 2.004583 TCAGCGACAGTTAATTCCGG 57.995 50.000 0.00 0.00 0.00 5.14
5074 6096 4.092821 TCATTTCAGCGACAGTTAATTCCG 59.907 41.667 0.00 0.00 0.00 4.30
5075 6097 5.122396 ACTCATTTCAGCGACAGTTAATTCC 59.878 40.000 0.00 0.00 0.00 3.01
5076 6098 6.017933 CACTCATTTCAGCGACAGTTAATTC 58.982 40.000 0.00 0.00 0.00 2.17
5077 6099 5.700832 TCACTCATTTCAGCGACAGTTAATT 59.299 36.000 0.00 0.00 0.00 1.40
5078 6100 5.237815 TCACTCATTTCAGCGACAGTTAAT 58.762 37.500 0.00 0.00 0.00 1.40
5079 6101 4.627058 TCACTCATTTCAGCGACAGTTAA 58.373 39.130 0.00 0.00 0.00 2.01
5080 6102 4.251543 TCACTCATTTCAGCGACAGTTA 57.748 40.909 0.00 0.00 0.00 2.24
5081 6103 3.111853 TCACTCATTTCAGCGACAGTT 57.888 42.857 0.00 0.00 0.00 3.16
5082 6104 2.820059 TCACTCATTTCAGCGACAGT 57.180 45.000 0.00 0.00 0.00 3.55
5083 6105 3.931468 AGATTCACTCATTTCAGCGACAG 59.069 43.478 0.00 0.00 0.00 3.51
5084 6106 3.930336 AGATTCACTCATTTCAGCGACA 58.070 40.909 0.00 0.00 0.00 4.35
5085 6107 4.864806 TGTAGATTCACTCATTTCAGCGAC 59.135 41.667 0.00 0.00 0.00 5.19
5086 6108 4.864806 GTGTAGATTCACTCATTTCAGCGA 59.135 41.667 0.00 0.00 35.68 4.93
5087 6109 4.627035 TGTGTAGATTCACTCATTTCAGCG 59.373 41.667 0.00 0.00 38.90 5.18
5088 6110 5.641209 AGTGTGTAGATTCACTCATTTCAGC 59.359 40.000 0.00 0.00 40.28 4.26
5089 6111 6.870439 TCAGTGTGTAGATTCACTCATTTCAG 59.130 38.462 0.00 0.00 42.05 3.02
5090 6112 6.758254 TCAGTGTGTAGATTCACTCATTTCA 58.242 36.000 0.00 0.00 42.05 2.69
5091 6113 7.658179 TTCAGTGTGTAGATTCACTCATTTC 57.342 36.000 0.00 0.00 42.05 2.17
5092 6114 7.307396 CGTTTCAGTGTGTAGATTCACTCATTT 60.307 37.037 0.00 0.00 42.05 2.32
5093 6115 6.146184 CGTTTCAGTGTGTAGATTCACTCATT 59.854 38.462 0.00 0.00 42.05 2.57
5094 6116 5.635280 CGTTTCAGTGTGTAGATTCACTCAT 59.365 40.000 0.00 0.00 42.05 2.90
5095 6117 4.982295 CGTTTCAGTGTGTAGATTCACTCA 59.018 41.667 0.00 0.00 42.05 3.41
5096 6118 4.982916 ACGTTTCAGTGTGTAGATTCACTC 59.017 41.667 0.00 0.00 42.05 3.51
5097 6119 4.745125 CACGTTTCAGTGTGTAGATTCACT 59.255 41.667 0.00 0.00 44.32 3.41
5098 6120 5.006649 CACGTTTCAGTGTGTAGATTCAC 57.993 43.478 0.00 0.00 37.35 3.18
5109 6131 5.994235 GTGTATCTAGACACGTTTCAGTG 57.006 43.478 4.26 0.00 46.83 3.66
5119 6141 5.357032 TCGCTGAAATGAGTGTATCTAGACA 59.643 40.000 0.00 0.00 0.00 3.41
5120 6142 5.683743 GTCGCTGAAATGAGTGTATCTAGAC 59.316 44.000 0.00 0.00 0.00 2.59
5121 6143 5.357032 TGTCGCTGAAATGAGTGTATCTAGA 59.643 40.000 0.00 0.00 0.00 2.43
5122 6144 5.582550 TGTCGCTGAAATGAGTGTATCTAG 58.417 41.667 0.00 0.00 0.00 2.43
5123 6145 5.125578 ACTGTCGCTGAAATGAGTGTATCTA 59.874 40.000 0.00 0.00 0.00 1.98
5124 6146 4.081972 ACTGTCGCTGAAATGAGTGTATCT 60.082 41.667 0.00 0.00 0.00 1.98
5125 6147 4.177026 ACTGTCGCTGAAATGAGTGTATC 58.823 43.478 0.00 0.00 0.00 2.24
5126 6148 4.193826 ACTGTCGCTGAAATGAGTGTAT 57.806 40.909 0.00 0.00 0.00 2.29
5127 6149 3.660501 ACTGTCGCTGAAATGAGTGTA 57.339 42.857 0.00 0.00 0.00 2.90
5128 6150 2.533266 ACTGTCGCTGAAATGAGTGT 57.467 45.000 0.00 0.00 0.00 3.55
5129 6151 4.990543 TTAACTGTCGCTGAAATGAGTG 57.009 40.909 0.00 0.00 0.00 3.51
5130 6152 5.122396 GGAATTAACTGTCGCTGAAATGAGT 59.878 40.000 0.00 0.00 0.00 3.41
5131 6153 5.563842 GGAATTAACTGTCGCTGAAATGAG 58.436 41.667 0.00 0.00 0.00 2.90
5132 6154 4.092821 CGGAATTAACTGTCGCTGAAATGA 59.907 41.667 0.00 0.00 0.00 2.57
5133 6155 4.334443 CGGAATTAACTGTCGCTGAAATG 58.666 43.478 0.00 0.00 0.00 2.32
5134 6156 3.374058 CCGGAATTAACTGTCGCTGAAAT 59.626 43.478 0.00 0.00 0.00 2.17
5135 6157 2.739913 CCGGAATTAACTGTCGCTGAAA 59.260 45.455 0.00 0.00 0.00 2.69
5136 6158 2.028839 TCCGGAATTAACTGTCGCTGAA 60.029 45.455 0.00 0.00 0.00 3.02
5137 6159 1.546923 TCCGGAATTAACTGTCGCTGA 59.453 47.619 0.00 0.00 0.00 4.26
5138 6160 2.004583 TCCGGAATTAACTGTCGCTG 57.995 50.000 0.00 0.00 0.00 5.18
5139 6161 2.550978 CATCCGGAATTAACTGTCGCT 58.449 47.619 9.01 0.00 0.00 4.93
5140 6162 1.597663 CCATCCGGAATTAACTGTCGC 59.402 52.381 9.01 0.00 0.00 5.19
5141 6163 3.123804 CTCCATCCGGAATTAACTGTCG 58.876 50.000 9.01 0.00 42.21 4.35
5142 6164 3.118371 ACCTCCATCCGGAATTAACTGTC 60.118 47.826 9.01 0.00 42.21 3.51
5143 6165 2.844348 ACCTCCATCCGGAATTAACTGT 59.156 45.455 9.01 0.00 42.21 3.55
5144 6166 3.560636 ACCTCCATCCGGAATTAACTG 57.439 47.619 9.01 0.00 42.21 3.16
5145 6167 3.265995 ACAACCTCCATCCGGAATTAACT 59.734 43.478 9.01 0.00 42.21 2.24
5146 6168 3.617284 ACAACCTCCATCCGGAATTAAC 58.383 45.455 9.01 0.00 42.21 2.01
5147 6169 5.104277 ACATACAACCTCCATCCGGAATTAA 60.104 40.000 9.01 0.00 42.21 1.40
5148 6170 4.410883 ACATACAACCTCCATCCGGAATTA 59.589 41.667 9.01 0.00 42.21 1.40
5149 6171 3.202151 ACATACAACCTCCATCCGGAATT 59.798 43.478 9.01 0.00 42.21 2.17
5150 6172 2.777692 ACATACAACCTCCATCCGGAAT 59.222 45.455 9.01 0.00 42.21 3.01
5151 6173 2.193127 ACATACAACCTCCATCCGGAA 58.807 47.619 9.01 0.00 42.21 4.30
5152 6174 1.874129 ACATACAACCTCCATCCGGA 58.126 50.000 6.61 6.61 39.79 5.14
5153 6175 2.710096 AACATACAACCTCCATCCGG 57.290 50.000 0.00 0.00 0.00 5.14
5154 6176 4.131649 TGTAACATACAACCTCCATCCG 57.868 45.455 0.00 0.00 35.38 4.18
5155 6177 5.354234 CACTTGTAACATACAACCTCCATCC 59.646 44.000 0.00 0.00 43.23 3.51
5156 6178 6.170506 TCACTTGTAACATACAACCTCCATC 58.829 40.000 0.00 0.00 43.23 3.51
5157 6179 6.121776 TCACTTGTAACATACAACCTCCAT 57.878 37.500 0.00 0.00 43.23 3.41
5158 6180 5.554437 TCACTTGTAACATACAACCTCCA 57.446 39.130 0.00 0.00 43.23 3.86
5159 6181 6.170506 TGATCACTTGTAACATACAACCTCC 58.829 40.000 0.00 0.00 43.23 4.30
5160 6182 7.667043 TTGATCACTTGTAACATACAACCTC 57.333 36.000 0.00 0.00 43.23 3.85
5161 6183 8.635765 ATTTGATCACTTGTAACATACAACCT 57.364 30.769 0.00 0.00 43.23 3.50
5162 6184 8.511321 TGATTTGATCACTTGTAACATACAACC 58.489 33.333 0.00 0.00 37.79 3.77
5163 6185 9.546909 CTGATTTGATCACTTGTAACATACAAC 57.453 33.333 0.00 0.00 38.15 3.32
5164 6186 9.500785 TCTGATTTGATCACTTGTAACATACAA 57.499 29.630 0.00 3.22 39.41 2.41
5165 6187 9.500785 TTCTGATTTGATCACTTGTAACATACA 57.499 29.630 0.00 0.00 35.06 2.29
5187 6209 3.859961 CGCTCCTACTGTGTACATTTCTG 59.140 47.826 0.00 0.00 0.00 3.02
5208 6230 5.796935 CAGTCTCATAAGAAAATTTGGTGCG 59.203 40.000 0.00 0.00 31.93 5.34
5228 6250 3.665323 CGCATGTAAACAAGAGCACAGTC 60.665 47.826 0.00 0.00 0.00 3.51
5231 6253 2.217750 ACGCATGTAAACAAGAGCACA 58.782 42.857 0.00 0.00 0.00 4.57
5244 6266 7.792374 ATTGATAAGTGAAGATAACGCATGT 57.208 32.000 0.00 0.00 0.00 3.21
5255 6277 6.748333 TTCAGCAGGAATTGATAAGTGAAG 57.252 37.500 0.00 0.00 0.00 3.02
5258 6280 6.805271 CAGTTTTCAGCAGGAATTGATAAGTG 59.195 38.462 0.00 0.00 34.91 3.16
5265 6287 4.311816 ACACAGTTTTCAGCAGGAATTG 57.688 40.909 0.00 0.00 34.91 2.32
5273 6295 6.846325 AGTAAGAAGTACACAGTTTTCAGC 57.154 37.500 0.00 0.00 34.88 4.26
5370 6393 5.614231 GCACTCATATGCACTGAATCGATTC 60.614 44.000 27.59 27.59 45.39 2.52
5464 6487 8.043113 AGACTAAATGACAAGATATTGCAGTCA 58.957 33.333 0.00 5.31 42.62 3.41
5506 6534 1.337260 ACTAGAACAGGTTCAGCAGCG 60.337 52.381 14.06 0.00 41.84 5.18
5507 6535 2.464157 ACTAGAACAGGTTCAGCAGC 57.536 50.000 14.06 0.00 41.84 5.25
5531 6559 8.939929 CAGAAGAAATGTCTTTGTCATAAGCTA 58.060 33.333 0.00 0.00 44.42 3.32
5534 6562 8.777413 TGTCAGAAGAAATGTCTTTGTCATAAG 58.223 33.333 0.00 0.00 44.42 1.73
5573 6601 9.817809 GAATACCTTCAATGTTCAGACAGTATA 57.182 33.333 0.00 0.00 39.58 1.47
5574 6602 8.321353 TGAATACCTTCAATGTTCAGACAGTAT 58.679 33.333 0.00 0.00 38.43 2.12
5576 6604 6.533730 TGAATACCTTCAATGTTCAGACAGT 58.466 36.000 0.00 0.00 38.43 3.55
5577 6605 7.439157 TTGAATACCTTCAATGTTCAGACAG 57.561 36.000 0.00 0.00 44.46 3.51
5780 6811 2.417516 CCGCCCGGTGTATGAGAG 59.582 66.667 0.00 0.00 0.00 3.20
5796 6827 1.275573 GTGTGTAGGAGGGAACTGACC 59.724 57.143 0.00 0.00 44.43 4.02
5806 6837 2.750166 AGACGATGTCAGTGTGTAGGAG 59.250 50.000 0.00 0.00 34.60 3.69
5886 6922 5.334319 TCTGCTCAATTTTACGATTGCATG 58.666 37.500 0.00 0.00 37.03 4.06
5932 6968 0.378962 CTGAGGTTAGTCGAGGAGCG 59.621 60.000 0.00 0.00 42.69 5.03
5935 6971 2.950309 GCATACTGAGGTTAGTCGAGGA 59.050 50.000 0.00 0.00 32.19 3.71
5958 6994 6.443206 CAGTCCCAGGATGAGAAATATAGGAT 59.557 42.308 0.00 0.00 39.69 3.24
5962 6998 7.282585 CAAACAGTCCCAGGATGAGAAATATA 58.717 38.462 0.00 0.00 39.69 0.86
5965 7001 4.338879 CAAACAGTCCCAGGATGAGAAAT 58.661 43.478 0.00 0.00 39.69 2.17
5967 7003 2.040278 CCAAACAGTCCCAGGATGAGAA 59.960 50.000 0.00 0.00 39.69 2.87
5968 7004 1.630369 CCAAACAGTCCCAGGATGAGA 59.370 52.381 0.00 0.00 39.69 3.27
5969 7005 1.952367 GCCAAACAGTCCCAGGATGAG 60.952 57.143 0.00 0.00 39.69 2.90
6050 7086 7.118724 CGGAATCATGTGAGTTTTTGTTTTTG 58.881 34.615 0.00 0.00 0.00 2.44
6055 7091 3.888930 ACCGGAATCATGTGAGTTTTTGT 59.111 39.130 9.46 0.00 0.00 2.83
6056 7092 4.229096 CACCGGAATCATGTGAGTTTTTG 58.771 43.478 9.46 0.00 31.66 2.44
6223 7265 3.717294 GCCACGGGACTCCACCAT 61.717 66.667 0.00 0.00 0.00 3.55
6306 7348 9.232473 CCTGCCTTAAGAAAAAGTCTACTATTT 57.768 33.333 3.36 0.00 34.56 1.40
6307 7349 7.337184 GCCTGCCTTAAGAAAAAGTCTACTATT 59.663 37.037 3.36 0.00 34.56 1.73
6308 7350 6.824196 GCCTGCCTTAAGAAAAAGTCTACTAT 59.176 38.462 3.36 0.00 34.56 2.12
6309 7351 6.013639 AGCCTGCCTTAAGAAAAAGTCTACTA 60.014 38.462 3.36 0.00 34.56 1.82
6310 7352 5.004448 GCCTGCCTTAAGAAAAAGTCTACT 58.996 41.667 3.36 0.00 34.56 2.57
6311 7353 5.004448 AGCCTGCCTTAAGAAAAAGTCTAC 58.996 41.667 3.36 0.00 34.56 2.59
6312 7354 5.003804 CAGCCTGCCTTAAGAAAAAGTCTA 58.996 41.667 3.36 0.00 34.56 2.59
6313 7355 3.823304 CAGCCTGCCTTAAGAAAAAGTCT 59.177 43.478 3.36 0.00 38.69 3.24
6314 7356 3.821033 TCAGCCTGCCTTAAGAAAAAGTC 59.179 43.478 3.36 0.00 0.00 3.01
6315 7357 3.832527 TCAGCCTGCCTTAAGAAAAAGT 58.167 40.909 3.36 0.00 0.00 2.66
6316 7358 4.037923 TGTTCAGCCTGCCTTAAGAAAAAG 59.962 41.667 3.36 0.00 0.00 2.27
6317 7359 3.957497 TGTTCAGCCTGCCTTAAGAAAAA 59.043 39.130 3.36 0.00 0.00 1.94
6318 7360 3.561143 TGTTCAGCCTGCCTTAAGAAAA 58.439 40.909 3.36 0.00 0.00 2.29
6319 7361 3.222173 TGTTCAGCCTGCCTTAAGAAA 57.778 42.857 3.36 0.00 0.00 2.52
6320 7362 2.949177 TGTTCAGCCTGCCTTAAGAA 57.051 45.000 3.36 0.00 0.00 2.52
6321 7363 2.949177 TTGTTCAGCCTGCCTTAAGA 57.051 45.000 3.36 0.00 0.00 2.10
6322 7364 2.887152 ACTTTGTTCAGCCTGCCTTAAG 59.113 45.455 0.00 0.00 0.00 1.85
6325 7369 2.106511 TCTACTTTGTTCAGCCTGCCTT 59.893 45.455 0.00 0.00 0.00 4.35
6375 7419 2.610859 AGGTCGGCCCATGGAGTT 60.611 61.111 15.22 0.00 34.66 3.01
6429 7473 0.821711 CTTCACCGGAAAGGCCACAA 60.822 55.000 9.46 0.00 46.52 3.33
6540 8863 0.034059 CCCGCTCTTATGTAGCCCAG 59.966 60.000 0.00 0.00 36.60 4.45
6557 8880 0.804989 CTTTCATCGCAGAACCACCC 59.195 55.000 0.00 0.00 43.58 4.61
6564 8887 3.044809 GCGTACCTTTCATCGCAGA 57.955 52.632 0.00 0.00 46.40 4.26
6570 8894 2.471255 GCAGCTGCGTACCTTTCAT 58.529 52.632 25.23 0.00 0.00 2.57
6691 9015 2.067932 TTGGTGGGGCCTTCTCACAG 62.068 60.000 0.84 0.00 38.35 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.