Multiple sequence alignment - TraesCS2D01G160000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G160000 chr2D 100.000 4360 0 0 1 4360 102878517 102874158 0.000000e+00 8052.0
1 TraesCS2D01G160000 chr2D 88.312 231 19 5 2395 2623 638082997 638082773 2.000000e-68 270.0
2 TraesCS2D01G160000 chr2D 89.100 211 20 2 2090 2300 638083238 638083031 4.330000e-65 259.0
3 TraesCS2D01G160000 chr2D 88.626 211 22 1 2090 2300 639844153 639843945 5.600000e-64 255.0
4 TraesCS2D01G160000 chr2A 88.418 2970 224 49 468 3400 101915555 101912669 0.000000e+00 3469.0
5 TraesCS2D01G160000 chr2A 90.869 679 46 7 3697 4360 101912469 101911792 0.000000e+00 896.0
6 TraesCS2D01G160000 chr2A 87.042 409 22 7 83 460 101916388 101915980 2.410000e-117 433.0
7 TraesCS2D01G160000 chr2A 84.106 453 45 16 208 649 101991752 101991316 3.140000e-111 412.0
8 TraesCS2D01G160000 chr2A 85.507 69 8 2 1897 1964 494186833 494186766 2.180000e-08 71.3
9 TraesCS2D01G160000 chr2B 85.559 1565 122 53 214 1741 154256845 154255348 0.000000e+00 1543.0
10 TraesCS2D01G160000 chr2B 89.952 1045 68 14 2300 3335 154254891 154253875 0.000000e+00 1314.0
11 TraesCS2D01G160000 chr2B 89.879 662 51 7 3697 4347 154253401 154252745 0.000000e+00 837.0
12 TraesCS2D01G160000 chr2B 90.521 211 18 1 2090 2300 154255131 154254923 1.190000e-70 278.0
13 TraesCS2D01G160000 chr3D 88.745 231 18 5 2395 2623 578757733 578757509 4.300000e-70 276.0
14 TraesCS2D01G160000 chr3D 88.312 231 17 7 2395 2623 26599573 26599351 7.190000e-68 268.0
15 TraesCS2D01G160000 chr3D 88.626 211 22 1 2090 2300 26599815 26599607 5.600000e-64 255.0
16 TraesCS2D01G160000 chr3D 88.152 211 23 1 2090 2300 578757975 578757767 2.600000e-62 250.0
17 TraesCS2D01G160000 chr7D 88.312 231 19 5 2395 2623 569997968 569997744 2.000000e-68 270.0
18 TraesCS2D01G160000 chr7D 88.152 211 23 1 2090 2300 135721008 135720800 2.600000e-62 250.0
19 TraesCS2D01G160000 chr7D 95.000 40 2 0 1702 1741 135721264 135721225 3.640000e-06 63.9
20 TraesCS2D01G160000 chr7D 95.000 40 2 0 1702 1741 569998465 569998426 3.640000e-06 63.9
21 TraesCS2D01G160000 chr7D 95.000 40 2 0 1702 1741 594702668 594702629 3.640000e-06 63.9
22 TraesCS2D01G160000 chr6D 88.312 231 19 5 2395 2623 244144904 244145128 2.000000e-68 270.0
23 TraesCS2D01G160000 chr6B 88.312 231 19 5 2395 2623 54551436 54551212 2.000000e-68 270.0
24 TraesCS2D01G160000 chr6B 90.909 187 16 1 1555 1741 54552080 54551895 2.600000e-62 250.0
25 TraesCS2D01G160000 chr6B 80.645 93 8 9 1453 1537 54552168 54552078 3.640000e-06 63.9
26 TraesCS2D01G160000 chr1D 88.312 231 19 5 2395 2623 206222345 206222121 2.000000e-68 270.0
27 TraesCS2D01G160000 chr5D 89.573 211 20 1 2090 2300 281947803 281948011 2.590000e-67 267.0
28 TraesCS2D01G160000 chr5D 95.000 40 2 0 1702 1741 281947548 281947587 3.640000e-06 63.9
29 TraesCS2D01G160000 chrUn 88.626 211 22 1 2090 2300 89219020 89218812 5.600000e-64 255.0
30 TraesCS2D01G160000 chrUn 95.238 42 1 1 1937 1977 377736458 377736499 1.010000e-06 65.8
31 TraesCS2D01G160000 chrUn 95.238 42 1 1 1937 1977 401364366 401364407 1.010000e-06 65.8
32 TraesCS2D01G160000 chrUn 95.238 42 1 1 1937 1977 402969049 402969090 1.010000e-06 65.8
33 TraesCS2D01G160000 chrUn 95.238 42 1 1 1937 1977 440355631 440355672 1.010000e-06 65.8
34 TraesCS2D01G160000 chrUn 95.000 40 2 0 1702 1741 89219276 89219237 3.640000e-06 63.9
35 TraesCS2D01G160000 chr4B 91.444 187 15 1 1555 1741 16322722 16322537 5.600000e-64 255.0
36 TraesCS2D01G160000 chr3B 89.840 187 18 1 1555 1741 12718335 12718520 5.640000e-59 239.0
37 TraesCS2D01G160000 chr3B 87.805 82 10 0 1893 1974 500544859 500544778 3.590000e-16 97.1
38 TraesCS2D01G160000 chr3B 95.238 42 1 1 1937 1977 829788238 829788279 1.010000e-06 65.8
39 TraesCS2D01G160000 chr3B 95.238 42 1 1 1937 1977 829836278 829836319 1.010000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G160000 chr2D 102874158 102878517 4359 True 8052.000000 8052 100.000000 1 4360 1 chr2D.!!$R1 4359
1 TraesCS2D01G160000 chr2A 101911792 101916388 4596 True 1599.333333 3469 88.776333 83 4360 3 chr2A.!!$R3 4277
2 TraesCS2D01G160000 chr2B 154252745 154256845 4100 True 993.000000 1543 88.977750 214 4347 4 chr2B.!!$R1 4133

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
186 211 0.456312 CTCTCTGGCGTTCGTGGTAC 60.456 60.000 0.00 0.00 0.00 3.34 F
1091 1555 0.317854 GTTTGGTCGAAACTGCAGGC 60.318 55.000 19.93 6.04 40.84 4.85 F
1601 2090 0.107456 CCCAGATTGCGATGCTAGGT 59.893 55.000 0.00 0.00 0.00 3.08 F
1694 2190 0.324923 ATGGGGTTGCATCATGCTGT 60.325 50.000 11.84 0.00 45.31 4.40 F
2242 2793 1.450312 GCCCGACTGGAGTTCATGG 60.450 63.158 0.00 0.00 37.49 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1316 1789 0.250038 CAATGGGTGAGCGGATCGAT 60.250 55.0 0.00 0.00 0.00 3.59 R
2205 2756 0.109132 CTTGGGCCAAGCGTTTGATC 60.109 55.0 31.72 4.75 34.63 2.92 R
3295 3905 0.036577 CTGGCCTTCAGAGGTGAGTG 60.037 60.0 3.32 0.00 46.18 3.51 R
3296 3906 0.472734 ACTGGCCTTCAGAGGTGAGT 60.473 55.0 3.32 0.00 46.18 3.41 R
3922 4710 0.322726 TAAACCCTTAGGCCGCAACC 60.323 55.0 0.00 0.00 36.11 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.579454 GAAGTAAAAGGGTTGGGAACAC 57.421 45.455 0.00 0.00 42.67 3.32
22 23 2.578786 AGTAAAAGGGTTGGGAACACG 58.421 47.619 0.00 0.00 42.67 4.49
23 24 2.173143 AGTAAAAGGGTTGGGAACACGA 59.827 45.455 0.00 0.00 42.67 4.35
24 25 2.375014 AAAAGGGTTGGGAACACGAT 57.625 45.000 0.00 0.00 42.67 3.73
25 26 1.616159 AAAGGGTTGGGAACACGATG 58.384 50.000 0.00 0.00 42.67 3.84
26 27 0.893727 AAGGGTTGGGAACACGATGC 60.894 55.000 0.00 0.00 42.67 3.91
27 28 1.602323 GGGTTGGGAACACGATGCA 60.602 57.895 0.00 0.00 42.67 3.96
28 29 0.965363 GGGTTGGGAACACGATGCAT 60.965 55.000 0.00 0.00 42.67 3.96
29 30 0.887933 GGTTGGGAACACGATGCATT 59.112 50.000 0.00 0.00 42.67 3.56
30 31 1.135402 GGTTGGGAACACGATGCATTC 60.135 52.381 0.00 0.00 42.67 2.67
31 32 1.812571 GTTGGGAACACGATGCATTCT 59.187 47.619 0.00 0.00 42.67 2.40
32 33 3.006940 GTTGGGAACACGATGCATTCTA 58.993 45.455 0.00 0.00 42.67 2.10
33 34 3.342377 TGGGAACACGATGCATTCTAA 57.658 42.857 0.00 0.00 33.40 2.10
34 35 3.680490 TGGGAACACGATGCATTCTAAA 58.320 40.909 0.00 0.00 33.40 1.85
35 36 4.075682 TGGGAACACGATGCATTCTAAAA 58.924 39.130 0.00 0.00 33.40 1.52
36 37 4.520874 TGGGAACACGATGCATTCTAAAAA 59.479 37.500 0.00 0.00 33.40 1.94
37 38 5.095490 GGGAACACGATGCATTCTAAAAAG 58.905 41.667 0.00 0.00 0.00 2.27
38 39 5.106317 GGGAACACGATGCATTCTAAAAAGA 60.106 40.000 0.00 0.00 0.00 2.52
39 40 6.404734 GGGAACACGATGCATTCTAAAAAGAT 60.405 38.462 0.00 0.00 0.00 2.40
40 41 7.201696 GGGAACACGATGCATTCTAAAAAGATA 60.202 37.037 0.00 0.00 0.00 1.98
41 42 8.345565 GGAACACGATGCATTCTAAAAAGATAT 58.654 33.333 0.00 0.00 0.00 1.63
65 66 4.799564 AAAAACACTGTGCTTCCTTTGA 57.200 36.364 7.90 0.00 0.00 2.69
66 67 4.799564 AAAACACTGTGCTTCCTTTGAA 57.200 36.364 7.90 0.00 0.00 2.69
67 68 4.799564 AAACACTGTGCTTCCTTTGAAA 57.200 36.364 7.90 0.00 0.00 2.69
68 69 5.343307 AAACACTGTGCTTCCTTTGAAAT 57.657 34.783 7.90 0.00 0.00 2.17
69 70 4.311816 ACACTGTGCTTCCTTTGAAATG 57.688 40.909 7.90 0.00 0.00 2.32
70 71 3.054878 CACTGTGCTTCCTTTGAAATGC 58.945 45.455 0.00 0.00 0.00 3.56
71 72 2.694628 ACTGTGCTTCCTTTGAAATGCA 59.305 40.909 0.00 0.00 31.46 3.96
72 73 3.132646 ACTGTGCTTCCTTTGAAATGCAA 59.867 39.130 0.00 0.00 34.59 4.08
73 74 4.121317 CTGTGCTTCCTTTGAAATGCAAA 58.879 39.130 0.00 0.00 43.89 3.68
74 75 4.511527 TGTGCTTCCTTTGAAATGCAAAA 58.488 34.783 0.00 0.00 45.26 2.44
75 76 4.332268 TGTGCTTCCTTTGAAATGCAAAAC 59.668 37.500 0.00 0.00 45.26 2.43
76 77 3.876320 TGCTTCCTTTGAAATGCAAAACC 59.124 39.130 0.00 0.00 45.26 3.27
77 78 3.876320 GCTTCCTTTGAAATGCAAAACCA 59.124 39.130 0.00 0.00 45.26 3.67
78 79 4.516321 GCTTCCTTTGAAATGCAAAACCAT 59.484 37.500 0.00 0.00 45.26 3.55
79 80 5.561339 GCTTCCTTTGAAATGCAAAACCATG 60.561 40.000 0.00 0.00 45.26 3.66
80 81 5.287674 TCCTTTGAAATGCAAAACCATGA 57.712 34.783 0.00 0.00 45.26 3.07
81 82 5.678583 TCCTTTGAAATGCAAAACCATGAA 58.321 33.333 0.00 0.00 45.26 2.57
104 105 9.190858 TGAATTTAATCAAACATTTCAAGTCCG 57.809 29.630 0.00 0.00 0.00 4.79
107 108 8.934507 TTTAATCAAACATTTCAAGTCCGTTT 57.065 26.923 0.00 0.00 0.00 3.60
108 109 6.826893 AATCAAACATTTCAAGTCCGTTTG 57.173 33.333 0.00 0.00 44.84 2.93
178 203 0.824759 GGTGATACCTCTCTGGCGTT 59.175 55.000 0.00 0.00 40.22 4.84
179 204 1.202428 GGTGATACCTCTCTGGCGTTC 60.202 57.143 0.00 0.00 40.22 3.95
186 211 0.456312 CTCTCTGGCGTTCGTGGTAC 60.456 60.000 0.00 0.00 0.00 3.34
210 235 1.841556 TCTTGTCCCCCAGCTCGTT 60.842 57.895 0.00 0.00 0.00 3.85
226 251 3.982058 GCTCGTTATCTACTTCAATCCCG 59.018 47.826 0.00 0.00 0.00 5.14
286 311 4.340666 TGCTACTCTCAAGCTCTCCTTATG 59.659 45.833 0.00 0.00 40.73 1.90
318 343 2.990740 TTCACCCCATTGTAGGCTTT 57.009 45.000 0.00 0.00 0.00 3.51
369 401 2.047274 CGGGTGTCATCGCCTTGT 60.047 61.111 0.00 0.00 43.20 3.16
396 429 3.832490 ACATCCCCTTTTAAGTCCAAAGC 59.168 43.478 0.00 0.00 30.94 3.51
410 443 3.383505 GTCCAAAGCCAAAAGTGTTACCT 59.616 43.478 0.00 0.00 0.00 3.08
416 449 1.796459 CCAAAAGTGTTACCTCGACCG 59.204 52.381 0.00 0.00 0.00 4.79
460 493 7.398024 AGTGTCTTTCTTGCCACTTAGATTAT 58.602 34.615 0.00 0.00 34.64 1.28
464 497 9.914131 GTCTTTCTTGCCACTTAGATTATTTTT 57.086 29.630 0.00 0.00 0.00 1.94
493 943 7.090808 CCGCTATATGTATTCTTGAGCTTGTA 58.909 38.462 0.00 0.00 0.00 2.41
534 984 3.371166 CCAATTCTACCCTTTCCCGCTTA 60.371 47.826 0.00 0.00 0.00 3.09
539 989 4.520179 TCTACCCTTTCCCGCTTATTTTC 58.480 43.478 0.00 0.00 0.00 2.29
541 991 1.404035 CCCTTTCCCGCTTATTTTCGG 59.596 52.381 0.00 0.00 44.89 4.30
544 994 1.033202 TTCCCGCTTATTTTCGGCCC 61.033 55.000 0.00 0.00 44.01 5.80
557 1007 2.614013 GGCCCCTCTTTCTCCCCA 60.614 66.667 0.00 0.00 0.00 4.96
561 1011 2.309504 CCCTCTTTCTCCCCACCCC 61.310 68.421 0.00 0.00 0.00 4.95
563 1013 3.327404 TCTTTCTCCCCACCCCGC 61.327 66.667 0.00 0.00 0.00 6.13
564 1014 4.778143 CTTTCTCCCCACCCCGCG 62.778 72.222 0.00 0.00 0.00 6.46
582 1032 4.101448 CCGGCTTCCCTCCCACTG 62.101 72.222 0.00 0.00 0.00 3.66
589 1039 2.040278 CCCTCCCACTGCTCCTCT 59.960 66.667 0.00 0.00 0.00 3.69
590 1040 2.365586 CCCTCCCACTGCTCCTCTG 61.366 68.421 0.00 0.00 0.00 3.35
621 1074 3.435601 GGGTATCATGCATTCACTCCCTT 60.436 47.826 0.00 0.00 0.00 3.95
623 1076 4.037208 GGTATCATGCATTCACTCCCTTTG 59.963 45.833 0.00 0.00 0.00 2.77
649 1102 7.615582 TTAGAGAGCAAACATTTATGACCTG 57.384 36.000 0.00 0.00 0.00 4.00
712 1165 9.449719 AAGAAAGTACTATGTAATTGAAGTGGG 57.550 33.333 0.00 0.00 0.00 4.61
786 1239 8.300286 TGTCGGCACATGAAAAATAAAGAAATA 58.700 29.630 0.00 0.00 0.00 1.40
810 1263 9.784531 ATATTACCATAGTTTGAGTGGATGAAG 57.215 33.333 0.00 0.00 36.82 3.02
851 1304 8.910944 CAGAGTGGAAATGAATCATAAGGATTT 58.089 33.333 0.00 0.00 46.17 2.17
852 1305 9.484806 AGAGTGGAAATGAATCATAAGGATTTT 57.515 29.630 0.00 0.00 46.17 1.82
878 1331 7.199766 ACAAAATTTCTAGTCACGCAAATCAA 58.800 30.769 0.00 0.00 0.00 2.57
882 1335 8.816640 AATTTCTAGTCACGCAAATCAAAATT 57.183 26.923 0.00 0.00 0.00 1.82
883 1336 9.906660 AATTTCTAGTCACGCAAATCAAAATTA 57.093 25.926 0.00 0.00 0.00 1.40
885 1338 9.554724 TTTCTAGTCACGCAAATCAAAATTATC 57.445 29.630 0.00 0.00 0.00 1.75
886 1339 8.262715 TCTAGTCACGCAAATCAAAATTATCA 57.737 30.769 0.00 0.00 0.00 2.15
887 1340 8.175069 TCTAGTCACGCAAATCAAAATTATCAC 58.825 33.333 0.00 0.00 0.00 3.06
888 1341 6.092748 AGTCACGCAAATCAAAATTATCACC 58.907 36.000 0.00 0.00 0.00 4.02
889 1342 5.861251 GTCACGCAAATCAAAATTATCACCA 59.139 36.000 0.00 0.00 0.00 4.17
890 1343 6.531240 GTCACGCAAATCAAAATTATCACCAT 59.469 34.615 0.00 0.00 0.00 3.55
891 1344 7.700234 GTCACGCAAATCAAAATTATCACCATA 59.300 33.333 0.00 0.00 0.00 2.74
892 1345 8.412456 TCACGCAAATCAAAATTATCACCATAT 58.588 29.630 0.00 0.00 0.00 1.78
893 1346 9.033481 CACGCAAATCAAAATTATCACCATATT 57.967 29.630 0.00 0.00 0.00 1.28
894 1347 9.248291 ACGCAAATCAAAATTATCACCATATTC 57.752 29.630 0.00 0.00 0.00 1.75
895 1348 9.467258 CGCAAATCAAAATTATCACCATATTCT 57.533 29.630 0.00 0.00 0.00 2.40
899 1352 9.683069 AATCAAAATTATCACCATATTCTTCGC 57.317 29.630 0.00 0.00 0.00 4.70
900 1353 8.219546 TCAAAATTATCACCATATTCTTCGCA 57.780 30.769 0.00 0.00 0.00 5.10
901 1354 8.681806 TCAAAATTATCACCATATTCTTCGCAA 58.318 29.630 0.00 0.00 0.00 4.85
902 1355 9.299963 CAAAATTATCACCATATTCTTCGCAAA 57.700 29.630 0.00 0.00 0.00 3.68
903 1356 9.868277 AAAATTATCACCATATTCTTCGCAAAA 57.132 25.926 0.00 0.00 0.00 2.44
904 1357 9.868277 AAATTATCACCATATTCTTCGCAAAAA 57.132 25.926 0.00 0.00 0.00 1.94
957 1410 3.691575 TGAATCAAAGGGGCGTATTCAA 58.308 40.909 0.00 0.00 34.53 2.69
958 1411 4.277476 TGAATCAAAGGGGCGTATTCAAT 58.723 39.130 0.00 0.00 34.53 2.57
959 1412 4.709397 TGAATCAAAGGGGCGTATTCAATT 59.291 37.500 0.00 0.00 34.53 2.32
996 1460 0.878961 GATCGCGAAAATACGGGGCT 60.879 55.000 15.24 0.00 44.19 5.19
1000 1464 1.504647 GCGAAAATACGGGGCTAGGC 61.505 60.000 8.00 8.00 0.00 3.93
1076 1540 4.421058 GCTAAATAAAGCCCCTTCGTTTG 58.579 43.478 0.00 0.00 36.45 2.93
1091 1555 0.317854 GTTTGGTCGAAACTGCAGGC 60.318 55.000 19.93 6.04 40.84 4.85
1123 1587 4.657824 AACGACACGGCTCCGGTG 62.658 66.667 13.31 0.00 44.69 4.94
1311 1784 2.785868 GGCGACCTAACCGAGTAGA 58.214 57.895 0.00 0.00 0.00 2.59
1314 1787 1.742761 CGACCTAACCGAGTAGACCA 58.257 55.000 0.00 0.00 0.00 4.02
1316 1789 2.489329 CGACCTAACCGAGTAGACCAAA 59.511 50.000 0.00 0.00 0.00 3.28
1330 1803 0.462047 ACCAAATCGATCCGCTCACC 60.462 55.000 0.00 0.00 0.00 4.02
1333 1806 0.469917 AAATCGATCCGCTCACCCAT 59.530 50.000 0.00 0.00 0.00 4.00
1397 1875 2.283676 GAGGACACCGAGGACCCA 60.284 66.667 0.00 0.00 0.00 4.51
1400 1878 4.436998 GACACCGAGGACCCAGCG 62.437 72.222 0.00 0.00 0.00 5.18
1479 1958 1.270550 GGCCTGTGGTGATGAGTTTTG 59.729 52.381 0.00 0.00 0.00 2.44
1481 1960 2.622942 GCCTGTGGTGATGAGTTTTGAA 59.377 45.455 0.00 0.00 0.00 2.69
1483 1962 4.616835 GCCTGTGGTGATGAGTTTTGAATC 60.617 45.833 0.00 0.00 0.00 2.52
1555 2044 5.221925 ACAGTTGATTGATGGTGTTCTAGGT 60.222 40.000 0.00 0.00 0.00 3.08
1560 2049 3.906720 TGATGGTGTTCTAGGTTAGGC 57.093 47.619 0.00 0.00 0.00 3.93
1562 2051 3.197766 TGATGGTGTTCTAGGTTAGGCAG 59.802 47.826 0.00 0.00 0.00 4.85
1601 2090 0.107456 CCCAGATTGCGATGCTAGGT 59.893 55.000 0.00 0.00 0.00 3.08
1618 2107 6.908825 TGCTAGGTTTAATTTGTGCAACTAG 58.091 36.000 0.00 0.00 38.04 2.57
1641 2137 1.768870 TCCTAGAACTGCCATTAGCCC 59.231 52.381 0.00 0.00 42.71 5.19
1645 2141 3.498774 AGAACTGCCATTAGCCCATAG 57.501 47.619 0.00 0.00 42.71 2.23
1659 2155 2.501316 GCCCATAGCTTCCCAAACAAAT 59.499 45.455 0.00 0.00 38.99 2.32
1673 2169 5.512921 CCCAAACAAATTGAAGGCATTAGGT 60.513 40.000 0.00 0.00 41.85 3.08
1677 2173 5.969423 ACAAATTGAAGGCATTAGGTCATG 58.031 37.500 0.00 0.00 0.00 3.07
1694 2190 0.324923 ATGGGGTTGCATCATGCTGT 60.325 50.000 11.84 0.00 45.31 4.40
1702 2198 1.945354 GCATCATGCTGTGGCTGCTT 61.945 55.000 1.02 0.00 40.96 3.91
1776 2327 2.165845 ACCAGTGATACGCTACTGTTCC 59.834 50.000 0.00 0.00 42.04 3.62
1846 2397 6.037610 GCATGATACTCCCTCTGTAACTTTTG 59.962 42.308 0.00 0.00 0.00 2.44
1848 2399 6.936279 TGATACTCCCTCTGTAACTTTTGAG 58.064 40.000 0.00 0.00 0.00 3.02
1927 2478 4.439426 CCATTCAAAAACAAGTGACGTGGA 60.439 41.667 3.19 0.00 34.17 4.02
1931 2482 5.336744 TCAAAAACAAGTGACGTGGATTTC 58.663 37.500 3.19 0.00 0.00 2.17
1955 2506 7.841956 TCCTTGAAATTTGAACTAAAACCACA 58.158 30.769 0.00 0.00 0.00 4.17
1968 2519 9.191995 GAACTAAAACCACATCACTTATTTTGG 57.808 33.333 0.00 0.00 0.00 3.28
1974 2525 4.380444 CCACATCACTTATTTTGGAACGGG 60.380 45.833 0.00 0.00 0.00 5.28
1988 2539 7.811117 TTTGGAACGGGGAAATATATAACAG 57.189 36.000 0.00 0.00 0.00 3.16
2030 2581 7.558161 TCACTAGAGCCACATCATAAAAATG 57.442 36.000 0.00 0.00 0.00 2.32
2037 2588 6.567050 AGCCACATCATAAAAATGCTGTTAG 58.433 36.000 0.00 0.00 29.53 2.34
2044 2595 9.443283 CATCATAAAAATGCTGTTAGTTCTAGC 57.557 33.333 0.00 0.00 37.93 3.42
2067 2618 3.311871 GCTCTATGCAATTGAGTGTGGAG 59.688 47.826 10.34 8.81 45.95 3.86
2075 2626 5.769662 TGCAATTGAGTGTGGAGTTAAGATT 59.230 36.000 10.34 0.00 0.00 2.40
2109 2660 6.268825 TCACTTGTAACCATCTACTCTCAC 57.731 41.667 0.00 0.00 0.00 3.51
2123 2674 4.013267 ACTCTCACACCAGGATTTTCTG 57.987 45.455 0.00 0.00 34.70 3.02
2149 2700 2.736400 GCCTTATTGCACTCACATTGGC 60.736 50.000 0.00 0.00 0.00 4.52
2242 2793 1.450312 GCCCGACTGGAGTTCATGG 60.450 63.158 0.00 0.00 37.49 3.66
2262 2813 7.725251 TCATGGTTTCTGTTAGCAAATTTTCT 58.275 30.769 0.00 0.00 0.00 2.52
2263 2814 8.203485 TCATGGTTTCTGTTAGCAAATTTTCTT 58.797 29.630 0.00 0.00 0.00 2.52
2330 2913 2.710377 TCAAATTGTCTCCCCGTGATG 58.290 47.619 0.00 0.00 0.00 3.07
2335 2918 2.401583 TGTCTCCCCGTGATGAAATG 57.598 50.000 0.00 0.00 0.00 2.32
2338 2921 2.420022 GTCTCCCCGTGATGAAATGTTG 59.580 50.000 0.00 0.00 0.00 3.33
2343 2926 2.813754 CCCGTGATGAAATGTTGACTGT 59.186 45.455 0.00 0.00 0.00 3.55
2346 2929 5.447683 CCCGTGATGAAATGTTGACTGTATG 60.448 44.000 0.00 0.00 0.00 2.39
2378 2961 6.479001 TCTTTACTCTTTGACGAAACTTGGAG 59.521 38.462 0.00 0.00 0.00 3.86
2405 2988 8.652463 CGTAAAAACACCTTGAACTCAATTTTT 58.348 29.630 14.12 14.12 37.70 1.94
2443 3028 4.816385 TGCTTGATTGCTAGGCATAAGTAC 59.184 41.667 0.00 0.00 38.76 2.73
2451 3036 4.899457 TGCTAGGCATAAGTACCACTGTAT 59.101 41.667 0.00 0.00 31.71 2.29
2459 3044 8.899771 GGCATAAGTACCACTGTATTACATTTT 58.100 33.333 0.00 0.00 0.00 1.82
2490 3075 3.244976 CAAATGGTTGAAGTCGAATGCC 58.755 45.455 0.00 0.00 36.83 4.40
2498 3083 4.794278 TGAAGTCGAATGCCTTACACTA 57.206 40.909 0.00 0.00 0.00 2.74
2505 3090 5.989777 GTCGAATGCCTTACACTATTATGGT 59.010 40.000 0.00 0.00 0.00 3.55
2509 3094 8.035394 CGAATGCCTTACACTATTATGGTATCT 58.965 37.037 0.00 0.00 0.00 1.98
2717 3302 5.048013 AGGTAAGAACATTGCTGGTTTAAGC 60.048 40.000 0.00 0.00 43.82 3.09
2759 3344 8.198778 ACAATGATTCATTAATGCAGCATACAA 58.801 29.630 17.16 6.56 32.35 2.41
2799 3385 4.471904 AGGATAAATCTTGTGCTCGTCA 57.528 40.909 0.00 0.00 0.00 4.35
2968 3557 1.491670 CGTCGCTAATCTGTCCATGG 58.508 55.000 4.97 4.97 0.00 3.66
3010 3599 4.015084 CAGTGCTTCAAGGGATCAAGATT 58.985 43.478 0.00 0.00 0.00 2.40
3039 3628 4.880537 CTAGGAGCTGCACGGCGG 62.881 72.222 13.24 0.66 38.08 6.13
3058 3654 2.693591 CGGACTCTGGCCTTTGTAGATA 59.306 50.000 3.32 0.00 0.00 1.98
3093 3689 5.417894 CCAGTGGATGAACTAGTGTAGTGTA 59.582 44.000 1.68 0.00 39.39 2.90
3129 3725 6.048509 TGTACTGTGTCATGGCAATATGTAG 58.951 40.000 0.00 0.00 0.00 2.74
3152 3748 6.162864 GATGCTCCAGATATTGGCAGCATG 62.163 50.000 25.82 0.00 45.39 4.06
3155 3751 3.850122 CCAGATATTGGCAGCATGATG 57.150 47.619 6.59 6.59 40.87 3.07
3156 3752 2.492088 CCAGATATTGGCAGCATGATGG 59.508 50.000 13.73 0.00 40.87 3.51
3162 3772 2.732844 TGGCAGCATGATGGTATTGA 57.267 45.000 13.73 0.00 39.69 2.57
3167 3777 4.543692 GCAGCATGATGGTATTGAACATC 58.456 43.478 13.73 0.00 42.86 3.06
3191 3801 6.320418 TCGTCAGAAACTAGATTATGTAGCCA 59.680 38.462 7.18 0.00 0.00 4.75
3196 3806 7.168302 CAGAAACTAGATTATGTAGCCAGTTCG 59.832 40.741 0.00 0.00 0.00 3.95
3213 3823 2.795175 TCGTAATTCTGGAGGCGATC 57.205 50.000 0.00 0.00 0.00 3.69
3221 3831 2.110578 TCTGGAGGCGATCATTTGAGA 58.889 47.619 0.00 0.00 0.00 3.27
3222 3832 2.501316 TCTGGAGGCGATCATTTGAGAA 59.499 45.455 0.00 0.00 0.00 2.87
3236 3846 7.377766 TCATTTGAGAAGTTTGGCTATGTAC 57.622 36.000 0.00 0.00 0.00 2.90
3237 3847 6.939730 TCATTTGAGAAGTTTGGCTATGTACA 59.060 34.615 0.00 0.00 0.00 2.90
3238 3848 7.446931 TCATTTGAGAAGTTTGGCTATGTACAA 59.553 33.333 0.00 0.00 0.00 2.41
3240 3850 6.801539 TGAGAAGTTTGGCTATGTACAAAG 57.198 37.500 0.00 0.00 37.27 2.77
3247 3857 4.901197 TGGCTATGTACAAAGTTCCTGA 57.099 40.909 0.00 0.00 0.00 3.86
3252 3862 6.992715 GGCTATGTACAAAGTTCCTGACATAT 59.007 38.462 0.00 0.00 31.36 1.78
3281 3891 6.713792 TTGTTTGCTGTTGTTTCTTAAACC 57.286 33.333 0.00 0.00 40.67 3.27
3291 3901 6.127952 TGTTGTTTCTTAAACCGCTTTAGTGT 60.128 34.615 0.41 0.00 40.67 3.55
3293 3903 4.977741 TTCTTAAACCGCTTTAGTGTCG 57.022 40.909 0.00 0.00 0.00 4.35
3294 3904 3.981211 TCTTAAACCGCTTTAGTGTCGT 58.019 40.909 0.00 0.00 0.00 4.34
3295 3905 3.983344 TCTTAAACCGCTTTAGTGTCGTC 59.017 43.478 0.00 0.00 0.00 4.20
3296 3906 2.228138 AAACCGCTTTAGTGTCGTCA 57.772 45.000 0.00 0.00 0.00 4.35
3297 3907 1.494824 AACCGCTTTAGTGTCGTCAC 58.505 50.000 4.52 4.52 44.15 3.67
3366 3976 6.213397 AGGCATTCTTAAATTAAAGGGCTTGT 59.787 34.615 0.00 0.00 0.00 3.16
3373 3983 5.712152 AAATTAAAGGGCTTGTGAGAGTG 57.288 39.130 0.00 0.00 0.00 3.51
3377 3987 1.302832 GGGCTTGTGAGAGTGTGGG 60.303 63.158 0.00 0.00 0.00 4.61
3438 4048 4.717877 TGACAAGGTCACAGTTTGATCAT 58.282 39.130 0.00 0.00 37.89 2.45
3439 4049 4.516321 TGACAAGGTCACAGTTTGATCATG 59.484 41.667 0.00 0.00 39.53 3.07
3442 4052 3.693807 AGGTCACAGTTTGATCATGCAT 58.306 40.909 0.00 0.00 37.89 3.96
3448 4058 6.643770 GTCACAGTTTGATCATGCATTTCTTT 59.356 34.615 0.00 0.00 36.32 2.52
3453 4063 9.199982 CAGTTTGATCATGCATTTCTTTAACTT 57.800 29.630 0.00 0.00 0.00 2.66
3455 4065 7.585286 TTGATCATGCATTTCTTTAACTTGC 57.415 32.000 0.00 0.00 0.00 4.01
3491 4253 5.940603 TTTAACATTTCAAACTGCACACG 57.059 34.783 0.00 0.00 0.00 4.49
3492 4254 1.838913 ACATTTCAAACTGCACACGC 58.161 45.000 0.00 0.00 39.24 5.34
3519 4281 5.183904 GGACCAGTAATTCAACAATTCTGCT 59.816 40.000 0.00 0.00 33.95 4.24
3530 4292 9.793252 ATTCAACAATTCTGCTATAACAACATC 57.207 29.630 0.00 0.00 0.00 3.06
3531 4293 8.565896 TCAACAATTCTGCTATAACAACATCT 57.434 30.769 0.00 0.00 0.00 2.90
3532 4294 8.453320 TCAACAATTCTGCTATAACAACATCTG 58.547 33.333 0.00 0.00 0.00 2.90
3533 4295 6.789262 ACAATTCTGCTATAACAACATCTGC 58.211 36.000 0.00 0.00 0.00 4.26
3534 4296 6.600822 ACAATTCTGCTATAACAACATCTGCT 59.399 34.615 0.00 0.00 0.00 4.24
3535 4297 6.615264 ATTCTGCTATAACAACATCTGCTG 57.385 37.500 0.00 0.00 0.00 4.41
3536 4298 3.873361 TCTGCTATAACAACATCTGCTGC 59.127 43.478 0.00 0.00 0.00 5.25
3537 4299 3.608796 TGCTATAACAACATCTGCTGCA 58.391 40.909 0.88 0.88 0.00 4.41
3539 4301 4.641541 TGCTATAACAACATCTGCTGCATT 59.358 37.500 1.31 0.00 0.00 3.56
3540 4302 5.125900 TGCTATAACAACATCTGCTGCATTT 59.874 36.000 1.31 0.00 0.00 2.32
3542 4304 6.197842 GCTATAACAACATCTGCTGCATTTTC 59.802 38.462 1.31 0.00 0.00 2.29
3543 4305 4.325028 AACAACATCTGCTGCATTTTCA 57.675 36.364 1.31 0.00 0.00 2.69
3571 4346 9.778741 AAAATATGGCGATCTCTTACTTCAATA 57.221 29.630 0.00 0.00 0.00 1.90
3573 4348 8.764524 ATATGGCGATCTCTTACTTCAATAAC 57.235 34.615 0.00 0.00 0.00 1.89
3574 4349 6.222038 TGGCGATCTCTTACTTCAATAACT 57.778 37.500 0.00 0.00 0.00 2.24
3576 4351 7.426410 TGGCGATCTCTTACTTCAATAACTAG 58.574 38.462 0.00 0.00 0.00 2.57
3577 4352 7.284716 TGGCGATCTCTTACTTCAATAACTAGA 59.715 37.037 0.00 0.00 0.00 2.43
3578 4353 7.592164 GGCGATCTCTTACTTCAATAACTAGAC 59.408 40.741 0.00 0.00 0.00 2.59
3589 4364 9.950496 ACTTCAATAACTAGACTCATTCATGTT 57.050 29.630 0.00 0.00 0.00 2.71
3625 4409 6.590234 AACGCTATGGACTGATATATCACA 57.410 37.500 11.49 8.89 32.50 3.58
3629 4413 7.093771 ACGCTATGGACTGATATATCACATTCA 60.094 37.037 17.62 12.03 32.50 2.57
3637 4421 8.913487 ACTGATATATCACATTCATTCAGCAA 57.087 30.769 11.49 0.00 34.19 3.91
3644 4428 4.701171 TCACATTCATTCAGCAATGCAGTA 59.299 37.500 8.35 0.00 39.56 2.74
3649 4433 7.604927 ACATTCATTCAGCAATGCAGTAATTTT 59.395 29.630 8.35 0.00 39.56 1.82
3650 4434 7.585286 TTCATTCAGCAATGCAGTAATTTTC 57.415 32.000 8.35 0.00 39.56 2.29
3651 4435 5.801444 TCATTCAGCAATGCAGTAATTTTCG 59.199 36.000 8.35 0.00 39.56 3.46
3652 4436 5.369685 TTCAGCAATGCAGTAATTTTCGA 57.630 34.783 8.35 0.00 0.00 3.71
3653 4437 5.369685 TCAGCAATGCAGTAATTTTCGAA 57.630 34.783 8.35 0.00 0.00 3.71
3654 4438 5.953183 TCAGCAATGCAGTAATTTTCGAAT 58.047 33.333 8.35 0.00 0.00 3.34
3657 4441 7.484641 TCAGCAATGCAGTAATTTTCGAATAAC 59.515 33.333 8.35 0.00 0.00 1.89
3658 4442 7.485913 CAGCAATGCAGTAATTTTCGAATAACT 59.514 33.333 8.35 0.00 0.00 2.24
3676 4460 9.697250 CGAATAACTCGTTTCTAAATGCATAAA 57.303 29.630 0.00 0.00 42.89 1.40
3698 4482 4.779993 AAAAGAACTCCCTGAAGTGTCT 57.220 40.909 0.00 0.00 0.00 3.41
3699 4483 4.779993 AAAGAACTCCCTGAAGTGTCTT 57.220 40.909 0.00 0.00 32.72 3.01
3700 4484 4.344359 AAGAACTCCCTGAAGTGTCTTC 57.656 45.455 2.95 2.95 28.96 2.87
3701 4485 3.309296 AGAACTCCCTGAAGTGTCTTCA 58.691 45.455 10.97 10.97 0.00 3.02
3708 4492 3.616956 CTGAAGTGTCTTCAGGGCATA 57.383 47.619 23.65 0.00 41.54 3.14
3720 4504 6.481644 GTCTTCAGGGCATAATCTTTCAGTAG 59.518 42.308 0.00 0.00 0.00 2.57
3722 4506 4.410228 TCAGGGCATAATCTTTCAGTAGCT 59.590 41.667 0.00 0.00 0.00 3.32
3742 4526 7.780745 AGTAGCTAACTAGACTCCATAACACAT 59.219 37.037 0.00 0.00 36.36 3.21
3746 4530 3.774766 ACTAGACTCCATAACACATGCCA 59.225 43.478 0.00 0.00 0.00 4.92
3747 4531 2.991250 AGACTCCATAACACATGCCAC 58.009 47.619 0.00 0.00 0.00 5.01
3750 4534 1.029408 TCCATAACACATGCCACGGC 61.029 55.000 0.00 0.00 42.35 5.68
3751 4535 1.062365 CATAACACATGCCACGGCG 59.938 57.895 4.80 4.80 45.51 6.46
3762 4546 1.429148 GCCACGGCGATGTAAAGAGG 61.429 60.000 16.62 1.95 0.00 3.69
3779 4563 4.025040 AGAGGATTGCTTGATGACAACA 57.975 40.909 0.00 0.00 32.27 3.33
3793 4577 2.100584 TGACAACACATCCAAAACCTGC 59.899 45.455 0.00 0.00 0.00 4.85
3802 4586 2.582052 TCCAAAACCTGCTAACCACAG 58.418 47.619 0.00 0.00 34.82 3.66
3812 4598 3.949132 TGCTAACCACAGCATCACATAA 58.051 40.909 0.00 0.00 46.41 1.90
3818 4604 7.255242 GCTAACCACAGCATCACATAATAATGT 60.255 37.037 0.00 0.00 42.98 2.71
3819 4605 6.624352 ACCACAGCATCACATAATAATGTC 57.376 37.500 0.00 0.00 44.70 3.06
3820 4606 6.359804 ACCACAGCATCACATAATAATGTCT 58.640 36.000 0.00 0.00 44.70 3.41
3860 4646 6.469782 AATATAACTTGGTGCCATTTCAGG 57.530 37.500 0.00 0.00 0.00 3.86
3874 4660 0.321564 TTCAGGCATCGGACCACTTG 60.322 55.000 0.00 0.00 0.00 3.16
3875 4661 1.003355 CAGGCATCGGACCACTTGT 60.003 57.895 0.00 0.00 0.00 3.16
3922 4710 6.653273 TGCTTCTAATCTTCTGATGAAACG 57.347 37.500 0.00 0.00 32.44 3.60
3975 4775 0.380733 TACATCCTACGCTGCGACAG 59.619 55.000 30.47 22.57 34.12 3.51
4032 4832 8.165239 ACAAAATACAAGACAGCTACATTTGA 57.835 30.769 0.00 0.00 0.00 2.69
4077 4877 1.374190 CAACTGCTGGAGCTCCACT 59.626 57.895 32.00 11.28 42.01 4.00
4116 4916 0.395036 TGGCAAACATGATACCCCGG 60.395 55.000 0.00 0.00 0.00 5.73
4212 5017 4.283467 AGCTGGTATAAACAGAGTCACACA 59.717 41.667 9.29 0.00 38.20 3.72
4220 5025 5.339008 AAACAGAGTCACACAGTCAGTTA 57.661 39.130 0.00 0.00 34.03 2.24
4262 5067 3.566742 TGCACGTCTACTTCTGTTGACTA 59.433 43.478 8.52 0.00 43.37 2.59
4310 5115 2.875296 AGTGGTAGGCATGCAGAAAAA 58.125 42.857 21.36 0.00 0.00 1.94
4331 5136 3.484407 AGGCATAGAAGAATGTGGATGC 58.516 45.455 0.00 0.00 39.13 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.004002 CGTGTTCCCAACCCTTTTACTTC 59.996 47.826 0.00 0.00 0.00 3.01
1 2 2.953648 CGTGTTCCCAACCCTTTTACTT 59.046 45.455 0.00 0.00 0.00 2.24
2 3 2.173143 TCGTGTTCCCAACCCTTTTACT 59.827 45.455 0.00 0.00 0.00 2.24
3 4 2.574450 TCGTGTTCCCAACCCTTTTAC 58.426 47.619 0.00 0.00 0.00 2.01
4 5 3.150767 CATCGTGTTCCCAACCCTTTTA 58.849 45.455 0.00 0.00 0.00 1.52
5 6 1.960689 CATCGTGTTCCCAACCCTTTT 59.039 47.619 0.00 0.00 0.00 2.27
6 7 1.616159 CATCGTGTTCCCAACCCTTT 58.384 50.000 0.00 0.00 0.00 3.11
7 8 0.893727 GCATCGTGTTCCCAACCCTT 60.894 55.000 0.00 0.00 0.00 3.95
8 9 1.303317 GCATCGTGTTCCCAACCCT 60.303 57.895 0.00 0.00 0.00 4.34
9 10 0.965363 ATGCATCGTGTTCCCAACCC 60.965 55.000 0.00 0.00 0.00 4.11
10 11 0.887933 AATGCATCGTGTTCCCAACC 59.112 50.000 0.00 0.00 0.00 3.77
11 12 1.812571 AGAATGCATCGTGTTCCCAAC 59.187 47.619 0.00 0.00 0.00 3.77
12 13 2.198827 AGAATGCATCGTGTTCCCAA 57.801 45.000 0.00 0.00 0.00 4.12
13 14 3.342377 TTAGAATGCATCGTGTTCCCA 57.658 42.857 0.00 0.00 0.00 4.37
14 15 4.695217 TTTTAGAATGCATCGTGTTCCC 57.305 40.909 0.00 0.00 0.00 3.97
15 16 5.938322 TCTTTTTAGAATGCATCGTGTTCC 58.062 37.500 0.00 0.00 0.00 3.62
44 45 4.799564 TCAAAGGAAGCACAGTGTTTTT 57.200 36.364 3.90 0.00 0.00 1.94
45 46 4.799564 TTCAAAGGAAGCACAGTGTTTT 57.200 36.364 3.90 0.00 0.00 2.43
46 47 4.799564 TTTCAAAGGAAGCACAGTGTTT 57.200 36.364 1.66 1.66 33.82 2.83
47 48 4.685924 CATTTCAAAGGAAGCACAGTGTT 58.314 39.130 1.61 0.00 33.82 3.32
48 49 3.491447 GCATTTCAAAGGAAGCACAGTGT 60.491 43.478 1.61 0.00 33.82 3.55
49 50 3.054878 GCATTTCAAAGGAAGCACAGTG 58.945 45.455 0.00 0.00 33.82 3.66
50 51 2.694628 TGCATTTCAAAGGAAGCACAGT 59.305 40.909 0.00 0.00 31.55 3.55
51 52 3.374220 TGCATTTCAAAGGAAGCACAG 57.626 42.857 0.00 0.00 31.55 3.66
52 53 3.815856 TTGCATTTCAAAGGAAGCACA 57.184 38.095 0.00 0.00 34.93 4.57
53 54 4.260743 GGTTTTGCATTTCAAAGGAAGCAC 60.261 41.667 0.00 0.00 44.62 4.40
54 55 3.876320 GGTTTTGCATTTCAAAGGAAGCA 59.124 39.130 0.00 0.00 44.62 3.91
55 56 3.876320 TGGTTTTGCATTTCAAAGGAAGC 59.124 39.130 0.00 0.00 44.62 3.86
56 57 5.759273 TCATGGTTTTGCATTTCAAAGGAAG 59.241 36.000 0.00 0.00 44.62 3.46
57 58 5.678583 TCATGGTTTTGCATTTCAAAGGAA 58.321 33.333 0.00 0.00 44.62 3.36
58 59 5.287674 TCATGGTTTTGCATTTCAAAGGA 57.712 34.783 0.00 0.00 44.62 3.36
59 60 6.563222 ATTCATGGTTTTGCATTTCAAAGG 57.437 33.333 0.00 0.00 44.62 3.11
60 61 9.947669 TTAAATTCATGGTTTTGCATTTCAAAG 57.052 25.926 0.00 0.00 44.62 2.77
63 64 9.281371 TGATTAAATTCATGGTTTTGCATTTCA 57.719 25.926 0.00 0.00 0.00 2.69
66 67 9.896263 GTTTGATTAAATTCATGGTTTTGCATT 57.104 25.926 0.00 0.00 0.00 3.56
67 68 9.064706 TGTTTGATTAAATTCATGGTTTTGCAT 57.935 25.926 0.00 0.00 0.00 3.96
68 69 8.442632 TGTTTGATTAAATTCATGGTTTTGCA 57.557 26.923 0.00 0.00 0.00 4.08
69 70 9.896263 AATGTTTGATTAAATTCATGGTTTTGC 57.104 25.926 0.00 0.00 0.00 3.68
78 79 9.190858 CGGACTTGAAATGTTTGATTAAATTCA 57.809 29.630 0.00 0.00 0.00 2.57
79 80 9.191995 ACGGACTTGAAATGTTTGATTAAATTC 57.808 29.630 0.00 0.00 0.00 2.17
80 81 9.541143 AACGGACTTGAAATGTTTGATTAAATT 57.459 25.926 0.00 0.00 0.00 1.82
81 82 9.541143 AAACGGACTTGAAATGTTTGATTAAAT 57.459 25.926 0.00 0.00 32.02 1.40
173 198 0.387239 ACTAACGTACCACGAACGCC 60.387 55.000 5.61 0.00 46.05 5.68
178 203 2.226437 GGACAAGACTAACGTACCACGA 59.774 50.000 5.61 0.00 46.05 4.35
186 211 0.391263 GCTGGGGGACAAGACTAACG 60.391 60.000 0.00 0.00 0.00 3.18
210 235 5.808366 ATTCAGCGGGATTGAAGTAGATA 57.192 39.130 0.00 0.00 37.91 1.98
286 311 4.130286 TGGGGTGAAAATGAAACACAAC 57.870 40.909 0.00 0.00 36.42 3.32
369 401 5.459505 TGGACTTAAAAGGGGATGTTTGAA 58.540 37.500 0.00 0.00 0.00 2.69
396 429 1.796459 CGGTCGAGGTAACACTTTTGG 59.204 52.381 0.00 0.00 41.41 3.28
410 443 1.377366 GCTGATCTGAGACCGGTCGA 61.377 60.000 28.26 19.84 34.09 4.20
416 449 0.615331 TTGGTGGCTGATCTGAGACC 59.385 55.000 3.42 8.36 0.00 3.85
464 497 5.932303 GCTCAAGAATACATATAGCGGGAAA 59.068 40.000 0.00 0.00 0.00 3.13
465 498 5.246203 AGCTCAAGAATACATATAGCGGGAA 59.754 40.000 0.00 0.00 33.80 3.97
466 499 4.772624 AGCTCAAGAATACATATAGCGGGA 59.227 41.667 0.00 0.00 33.80 5.14
467 500 5.078411 AGCTCAAGAATACATATAGCGGG 57.922 43.478 0.00 0.00 33.80 6.13
468 501 5.928839 ACAAGCTCAAGAATACATATAGCGG 59.071 40.000 0.00 0.00 33.80 5.52
469 502 8.520835 TTACAAGCTCAAGAATACATATAGCG 57.479 34.615 0.00 0.00 33.80 4.26
520 970 2.089201 CGAAAATAAGCGGGAAAGGGT 58.911 47.619 0.00 0.00 0.00 4.34
534 984 1.341089 GGAGAAAGAGGGGCCGAAAAT 60.341 52.381 0.00 0.00 0.00 1.82
539 989 3.798511 GGGGAGAAAGAGGGGCCG 61.799 72.222 0.00 0.00 0.00 6.13
541 991 2.677848 GTGGGGAGAAAGAGGGGC 59.322 66.667 0.00 0.00 0.00 5.80
544 994 2.670148 CGGGGTGGGGAGAAAGAGG 61.670 68.421 0.00 0.00 0.00 3.69
581 1031 0.841961 CCATCCAATCCAGAGGAGCA 59.158 55.000 0.00 0.00 37.34 4.26
582 1032 0.110104 CCCATCCAATCCAGAGGAGC 59.890 60.000 0.00 0.00 37.34 4.70
589 1039 2.446285 TGCATGATACCCATCCAATCCA 59.554 45.455 0.00 0.00 31.94 3.41
590 1040 3.159213 TGCATGATACCCATCCAATCC 57.841 47.619 0.00 0.00 31.94 3.01
621 1074 8.677300 GGTCATAAATGTTTGCTCTCTAATCAA 58.323 33.333 0.00 0.00 0.00 2.57
623 1076 8.341173 CAGGTCATAAATGTTTGCTCTCTAATC 58.659 37.037 0.00 0.00 0.00 1.75
697 1150 9.170890 TCCTATAGAATCCCACTTCAATTACAT 57.829 33.333 0.00 0.00 0.00 2.29
786 1239 7.861629 TCTTCATCCACTCAAACTATGGTAAT 58.138 34.615 0.00 0.00 34.89 1.89
825 1278 8.461249 AATCCTTATGATTCATTTCCACTCTG 57.539 34.615 4.14 0.00 39.56 3.35
851 1304 8.346300 TGATTTGCGTGACTAGAAATTTTGTAA 58.654 29.630 0.00 0.00 0.00 2.41
852 1305 7.866729 TGATTTGCGTGACTAGAAATTTTGTA 58.133 30.769 0.00 0.00 0.00 2.41
853 1306 6.734137 TGATTTGCGTGACTAGAAATTTTGT 58.266 32.000 0.00 0.00 0.00 2.83
854 1307 7.621832 TTGATTTGCGTGACTAGAAATTTTG 57.378 32.000 0.00 0.00 0.00 2.44
859 1312 9.554724 GATAATTTTGATTTGCGTGACTAGAAA 57.445 29.630 0.00 0.00 0.00 2.52
860 1313 8.726068 TGATAATTTTGATTTGCGTGACTAGAA 58.274 29.630 0.00 0.00 0.00 2.10
869 1322 9.467258 AGAATATGGTGATAATTTTGATTTGCG 57.533 29.630 0.00 0.00 0.00 4.85
878 1331 9.868277 TTTTTGCGAAGAATATGGTGATAATTT 57.132 25.926 0.00 0.00 0.00 1.82
933 1386 4.819630 TGAATACGCCCCTTTGATTCATAC 59.180 41.667 0.00 0.00 32.90 2.39
1000 1464 0.250513 GACTGGGAACTGGCTAGTGG 59.749 60.000 2.40 0.00 37.19 4.00
1076 1540 3.056328 GGGCCTGCAGTTTCGACC 61.056 66.667 13.81 4.71 0.00 4.79
1091 1555 2.124860 GTTCGGTCGGAATGGGGG 60.125 66.667 0.00 0.00 36.92 5.40
1115 1579 4.162690 CTACCTGGCCACCGGAGC 62.163 72.222 17.65 11.10 29.82 4.70
1302 1775 2.361438 GGATCGATTTGGTCTACTCGGT 59.639 50.000 0.00 0.00 0.00 4.69
1311 1784 0.462047 GGTGAGCGGATCGATTTGGT 60.462 55.000 0.00 0.15 0.00 3.67
1314 1787 0.469917 ATGGGTGAGCGGATCGATTT 59.530 50.000 0.00 0.00 0.00 2.17
1316 1789 0.250038 CAATGGGTGAGCGGATCGAT 60.250 55.000 0.00 0.00 0.00 3.59
1330 1803 2.624838 GGGATATCTGCAACACCAATGG 59.375 50.000 0.00 0.00 0.00 3.16
1333 1806 1.408127 CGGGGATATCTGCAACACCAA 60.408 52.381 2.05 0.00 0.00 3.67
1338 1811 1.166531 GGCACGGGGATATCTGCAAC 61.167 60.000 14.49 0.00 0.00 4.17
1431 1910 3.883997 GCAGGAGAAGGCGATAGAG 57.116 57.895 0.00 0.00 39.76 2.43
1462 1941 5.694231 TGATTCAAAACTCATCACCACAG 57.306 39.130 0.00 0.00 0.00 3.66
1479 1958 3.817084 TGCAGATCGGGATTGATTGATTC 59.183 43.478 0.00 0.00 0.00 2.52
1481 1960 3.497103 TGCAGATCGGGATTGATTGAT 57.503 42.857 0.00 0.00 0.00 2.57
1483 1962 2.486982 GGATGCAGATCGGGATTGATTG 59.513 50.000 0.78 0.00 0.00 2.67
1576 2065 1.068753 ATCGCAATCTGGGAGCTCG 59.931 57.895 7.83 0.00 42.66 5.03
1601 2090 8.372459 TCTAGGAGTCTAGTTGCACAAATTAAA 58.628 33.333 0.00 0.00 42.66 1.52
1618 2107 3.493524 GGCTAATGGCAGTTCTAGGAGTC 60.494 52.174 0.00 0.00 44.01 3.36
1641 2137 5.870978 CCTTCAATTTGTTTGGGAAGCTATG 59.129 40.000 0.00 0.00 35.92 2.23
1645 2141 2.807967 GCCTTCAATTTGTTTGGGAAGC 59.192 45.455 0.00 0.00 35.92 3.86
1659 2155 2.358090 CCCCATGACCTAATGCCTTCAA 60.358 50.000 0.00 0.00 0.00 2.69
1673 2169 2.507213 GCATGATGCAACCCCATGA 58.493 52.632 13.36 0.00 44.26 3.07
1694 2190 2.170166 CATTTCCCTAACAAGCAGCCA 58.830 47.619 0.00 0.00 0.00 4.75
1702 2198 4.787551 ACAACAGACACATTTCCCTAACA 58.212 39.130 0.00 0.00 0.00 2.41
1846 2397 5.978934 TGGACTTCAAAAACGTCTTACTC 57.021 39.130 0.00 0.00 0.00 2.59
1848 2399 6.134061 GTCATGGACTTCAAAAACGTCTTAC 58.866 40.000 0.00 0.00 0.00 2.34
1927 2478 9.898152 TGGTTTTAGTTCAAATTTCAAGGAAAT 57.102 25.926 0.00 0.00 43.07 2.17
1931 2482 8.661352 ATGTGGTTTTAGTTCAAATTTCAAGG 57.339 30.769 0.00 0.00 0.00 3.61
1955 2506 4.310022 TCCCCGTTCCAAAATAAGTGAT 57.690 40.909 0.00 0.00 0.00 3.06
1968 2519 7.929785 TCACTTCTGTTATATATTTCCCCGTTC 59.070 37.037 0.00 0.00 0.00 3.95
1974 2525 7.095017 GGCAGCTCACTTCTGTTATATATTTCC 60.095 40.741 0.00 0.00 34.21 3.13
2030 2581 2.570442 AGAGCGCTAGAACTAACAGC 57.430 50.000 11.50 0.00 0.00 4.40
2123 2674 0.680921 TGAGTGCAATAAGGCAGCCC 60.681 55.000 8.22 0.00 45.96 5.19
2129 2680 2.478370 CGCCAATGTGAGTGCAATAAGG 60.478 50.000 0.00 0.00 0.00 2.69
2205 2756 0.109132 CTTGGGCCAAGCGTTTGATC 60.109 55.000 31.72 4.75 34.63 2.92
2225 2776 0.324943 AACCATGAACTCCAGTCGGG 59.675 55.000 0.00 0.00 38.37 5.14
2330 2913 4.797471 TGCAAGCATACAGTCAACATTTC 58.203 39.130 0.00 0.00 0.00 2.17
2335 2918 4.691860 AAGATGCAAGCATACAGTCAAC 57.308 40.909 7.64 0.00 36.70 3.18
2338 2921 5.814705 AGAGTAAAGATGCAAGCATACAGTC 59.185 40.000 7.64 6.08 36.70 3.51
2343 2926 6.183360 CGTCAAAGAGTAAAGATGCAAGCATA 60.183 38.462 7.64 0.00 36.70 3.14
2346 2929 4.152402 TCGTCAAAGAGTAAAGATGCAAGC 59.848 41.667 0.00 0.00 0.00 4.01
2378 2961 4.281525 TGAGTTCAAGGTGTTTTTACGC 57.718 40.909 0.00 0.00 0.00 4.42
2405 2988 7.283807 AGCAATCAAGCAGACATTCATATTACA 59.716 33.333 0.00 0.00 36.85 2.41
2443 3028 9.289303 GTATTGCTCAAAAATGTAATACAGTGG 57.711 33.333 0.00 0.00 39.66 4.00
2451 3036 9.553064 AACCATTTGTATTGCTCAAAAATGTAA 57.447 25.926 13.05 0.00 38.11 2.41
2459 3044 6.403866 ACTTCAACCATTTGTATTGCTCAA 57.596 33.333 0.00 0.00 34.02 3.02
2544 3129 5.185454 CCAGCTGTTGAGTATTGACCATAA 58.815 41.667 13.81 0.00 0.00 1.90
2600 3185 4.096984 GGCTTTCCTGATCTGTTTGGTATG 59.903 45.833 0.00 0.00 0.00 2.39
2688 3273 4.760204 ACCAGCAATGTTCTTACCTTGTAC 59.240 41.667 0.00 0.00 33.84 2.90
2689 3274 4.980573 ACCAGCAATGTTCTTACCTTGTA 58.019 39.130 0.00 0.00 33.84 2.41
2690 3275 3.832527 ACCAGCAATGTTCTTACCTTGT 58.167 40.909 0.00 0.00 33.84 3.16
2717 3302 1.155889 TTGTACCATGTCAGCTTGCG 58.844 50.000 0.00 0.00 0.00 4.85
2741 3326 5.394005 GGGTGTTTGTATGCTGCATTAATGA 60.394 40.000 21.56 0.00 0.00 2.57
2748 3333 1.697284 TTGGGTGTTTGTATGCTGCA 58.303 45.000 4.13 4.13 0.00 4.41
2835 3423 8.225603 ACTTCGTATGGAAAATGCTTATGATT 57.774 30.769 0.00 0.00 33.34 2.57
2836 3424 7.716998 AGACTTCGTATGGAAAATGCTTATGAT 59.283 33.333 0.00 0.00 33.34 2.45
2837 3425 7.047891 AGACTTCGTATGGAAAATGCTTATGA 58.952 34.615 0.00 0.00 33.34 2.15
2838 3426 7.251704 AGACTTCGTATGGAAAATGCTTATG 57.748 36.000 0.00 0.00 33.34 1.90
2839 3427 9.561069 AATAGACTTCGTATGGAAAATGCTTAT 57.439 29.630 0.00 0.00 33.34 1.73
2840 3428 8.958119 AATAGACTTCGTATGGAAAATGCTTA 57.042 30.769 0.00 0.00 33.34 3.09
2841 3429 7.865706 AATAGACTTCGTATGGAAAATGCTT 57.134 32.000 0.00 0.00 33.34 3.91
2842 3430 8.204836 ACTAATAGACTTCGTATGGAAAATGCT 58.795 33.333 0.00 0.00 33.34 3.79
2855 3443 4.171005 TGCACGGAAACTAATAGACTTCG 58.829 43.478 0.00 0.00 0.00 3.79
2968 3557 5.120830 CACTGCAGTTCATACCAAGTTAGAC 59.879 44.000 18.94 0.00 0.00 2.59
3010 3599 2.433604 CAGCTCCTAGAATTCCAGCAGA 59.566 50.000 15.05 1.01 32.17 4.26
3039 3628 6.587273 AGAAATATCTACAAAGGCCAGAGTC 58.413 40.000 5.01 0.00 32.88 3.36
3041 3630 8.964476 TTAAGAAATATCTACAAAGGCCAGAG 57.036 34.615 5.01 0.00 33.77 3.35
3042 3631 9.920946 ATTTAAGAAATATCTACAAAGGCCAGA 57.079 29.630 5.01 0.00 33.77 3.86
3044 3633 9.131791 GGATTTAAGAAATATCTACAAAGGCCA 57.868 33.333 5.01 0.00 33.77 5.36
3045 3634 9.131791 TGGATTTAAGAAATATCTACAAAGGCC 57.868 33.333 0.00 0.00 33.77 5.19
3058 3654 9.401058 CTAGTTCATCCACTGGATTTAAGAAAT 57.599 33.333 7.95 10.14 39.79 2.17
3093 3689 4.100963 TGACACAGTACAGTTCAACCAGAT 59.899 41.667 0.00 0.00 0.00 2.90
3146 3742 4.274214 ACGATGTTCAATACCATCATGCTG 59.726 41.667 0.00 0.00 0.00 4.41
3147 3743 4.454678 ACGATGTTCAATACCATCATGCT 58.545 39.130 0.00 0.00 0.00 3.79
3148 3744 4.273235 TGACGATGTTCAATACCATCATGC 59.727 41.667 0.00 0.00 0.00 4.06
3149 3745 5.754890 TCTGACGATGTTCAATACCATCATG 59.245 40.000 0.00 0.00 0.00 3.07
3150 3746 5.917462 TCTGACGATGTTCAATACCATCAT 58.083 37.500 0.00 0.00 0.00 2.45
3151 3747 5.337578 TCTGACGATGTTCAATACCATCA 57.662 39.130 0.00 0.00 0.00 3.07
3152 3748 6.313905 AGTTTCTGACGATGTTCAATACCATC 59.686 38.462 0.00 0.00 0.00 3.51
3153 3749 6.173339 AGTTTCTGACGATGTTCAATACCAT 58.827 36.000 0.00 0.00 0.00 3.55
3154 3750 5.547465 AGTTTCTGACGATGTTCAATACCA 58.453 37.500 0.00 0.00 0.00 3.25
3155 3751 7.033791 TCTAGTTTCTGACGATGTTCAATACC 58.966 38.462 0.00 0.00 0.00 2.73
3156 3752 8.635877 ATCTAGTTTCTGACGATGTTCAATAC 57.364 34.615 0.00 0.00 0.00 1.89
3162 3772 9.737427 CTACATAATCTAGTTTCTGACGATGTT 57.263 33.333 6.06 0.00 0.00 2.71
3167 3777 6.504398 TGGCTACATAATCTAGTTTCTGACG 58.496 40.000 6.06 0.00 0.00 4.35
3191 3801 1.822990 TCGCCTCCAGAATTACGAACT 59.177 47.619 0.00 0.00 0.00 3.01
3196 3806 4.816385 TCAAATGATCGCCTCCAGAATTAC 59.184 41.667 0.00 0.00 0.00 1.89
3213 3823 7.144722 TGTACATAGCCAAACTTCTCAAATG 57.855 36.000 0.00 0.00 0.00 2.32
3221 3831 6.016276 CAGGAACTTTGTACATAGCCAAACTT 60.016 38.462 12.62 0.00 34.60 2.66
3222 3832 5.473504 CAGGAACTTTGTACATAGCCAAACT 59.526 40.000 12.62 2.92 34.60 2.66
3255 3865 8.874816 GGTTTAAGAAACAACAGCAAACAAATA 58.125 29.630 4.60 0.00 43.15 1.40
3261 3871 3.860536 GCGGTTTAAGAAACAACAGCAAA 59.139 39.130 4.60 0.00 41.87 3.68
3267 3877 6.260377 ACACTAAAGCGGTTTAAGAAACAAC 58.740 36.000 19.35 0.00 43.15 3.32
3291 3901 1.248486 CCTTCAGAGGTGAGTGACGA 58.752 55.000 0.00 0.00 38.32 4.20
3293 3903 0.036858 GGCCTTCAGAGGTGAGTGAC 60.037 60.000 0.00 0.00 45.44 3.67
3294 3904 0.471780 TGGCCTTCAGAGGTGAGTGA 60.472 55.000 3.32 0.00 45.44 3.41
3295 3905 0.036577 CTGGCCTTCAGAGGTGAGTG 60.037 60.000 3.32 0.00 46.18 3.51
3296 3906 0.472734 ACTGGCCTTCAGAGGTGAGT 60.473 55.000 3.32 0.00 46.18 3.41
3297 3907 0.689623 AACTGGCCTTCAGAGGTGAG 59.310 55.000 3.32 0.00 46.18 3.51
3339 3949 7.971368 AGCCCTTTAATTTAAGAATGCCTTA 57.029 32.000 5.78 0.00 36.34 2.69
3400 4010 6.707290 ACCTTGTCATTGTATTGTACAGCTA 58.293 36.000 0.00 0.00 40.24 3.32
3401 4011 5.560724 ACCTTGTCATTGTATTGTACAGCT 58.439 37.500 0.00 0.00 40.24 4.24
3402 4012 5.411361 TGACCTTGTCATTGTATTGTACAGC 59.589 40.000 0.00 0.00 37.67 4.40
3403 4013 6.426633 TGTGACCTTGTCATTGTATTGTACAG 59.573 38.462 0.00 0.00 44.63 2.74
3404 4014 6.292150 TGTGACCTTGTCATTGTATTGTACA 58.708 36.000 0.00 0.00 44.63 2.90
3405 4015 6.426937 ACTGTGACCTTGTCATTGTATTGTAC 59.573 38.462 0.00 0.00 44.63 2.90
3406 4016 6.530120 ACTGTGACCTTGTCATTGTATTGTA 58.470 36.000 0.00 0.00 44.63 2.41
3407 4017 5.376625 ACTGTGACCTTGTCATTGTATTGT 58.623 37.500 0.00 0.00 44.63 2.71
3408 4018 5.947228 ACTGTGACCTTGTCATTGTATTG 57.053 39.130 0.00 0.00 44.63 1.90
3409 4019 6.545666 TCAAACTGTGACCTTGTCATTGTATT 59.454 34.615 0.00 0.00 44.63 1.89
3410 4020 6.061441 TCAAACTGTGACCTTGTCATTGTAT 58.939 36.000 0.00 0.00 44.63 2.29
3411 4021 5.432645 TCAAACTGTGACCTTGTCATTGTA 58.567 37.500 0.00 0.00 44.63 2.41
3412 4022 4.269183 TCAAACTGTGACCTTGTCATTGT 58.731 39.130 0.00 0.56 44.63 2.71
3413 4023 4.898829 TCAAACTGTGACCTTGTCATTG 57.101 40.909 0.00 1.74 44.63 2.82
3414 4024 5.132502 TGATCAAACTGTGACCTTGTCATT 58.867 37.500 0.00 0.00 44.63 2.57
3418 4028 3.254166 GCATGATCAAACTGTGACCTTGT 59.746 43.478 0.00 0.00 39.72 3.16
3419 4029 3.253921 TGCATGATCAAACTGTGACCTTG 59.746 43.478 0.00 0.00 39.72 3.61
3466 4228 7.306283 GCGTGTGCAGTTTGAAATGTTAAATTA 60.306 33.333 0.00 0.00 42.15 1.40
3468 4230 5.051106 GCGTGTGCAGTTTGAAATGTTAAAT 60.051 36.000 0.00 0.00 42.15 1.40
3472 4234 2.192624 GCGTGTGCAGTTTGAAATGTT 58.807 42.857 0.00 0.00 42.15 2.71
3485 4247 0.882927 TTACTGGTCCTTGCGTGTGC 60.883 55.000 0.00 0.00 43.20 4.57
3489 4251 2.812011 GTTGAATTACTGGTCCTTGCGT 59.188 45.455 0.00 0.00 0.00 5.24
3491 4253 4.846779 TTGTTGAATTACTGGTCCTTGC 57.153 40.909 0.00 0.00 0.00 4.01
3492 4254 7.086376 CAGAATTGTTGAATTACTGGTCCTTG 58.914 38.462 0.00 0.00 31.58 3.61
3519 4281 7.155655 TGAAAATGCAGCAGATGTTGTTATA 57.844 32.000 0.00 0.00 0.00 0.98
3571 4346 9.725019 TCATAACAAACATGAATGAGTCTAGTT 57.275 29.630 0.00 0.00 29.55 2.24
3573 4348 9.979270 GTTCATAACAAACATGAATGAGTCTAG 57.021 33.333 0.00 0.00 42.63 2.43
3574 4349 9.500785 TGTTCATAACAAACATGAATGAGTCTA 57.499 29.630 0.00 0.00 42.63 2.59
3581 4356 8.243426 AGCGTTATGTTCATAACAAACATGAAT 58.757 29.630 25.28 7.11 44.75 2.57
3582 4357 7.589395 AGCGTTATGTTCATAACAAACATGAA 58.411 30.769 25.28 0.00 44.75 2.57
3583 4358 7.139896 AGCGTTATGTTCATAACAAACATGA 57.860 32.000 25.28 4.38 44.75 3.07
3584 4359 8.946935 CATAGCGTTATGTTCATAACAAACATG 58.053 33.333 25.28 19.31 44.75 3.21
3585 4360 8.128582 CCATAGCGTTATGTTCATAACAAACAT 58.871 33.333 25.28 11.46 45.86 2.71
3586 4361 7.334671 TCCATAGCGTTATGTTCATAACAAACA 59.665 33.333 25.28 13.47 45.86 2.83
3587 4362 7.638683 GTCCATAGCGTTATGTTCATAACAAAC 59.361 37.037 25.28 17.45 45.86 2.93
3588 4363 7.551262 AGTCCATAGCGTTATGTTCATAACAAA 59.449 33.333 25.28 15.17 45.86 2.83
3589 4364 7.011016 CAGTCCATAGCGTTATGTTCATAACAA 59.989 37.037 25.28 15.42 45.86 2.83
3590 4365 6.478673 CAGTCCATAGCGTTATGTTCATAACA 59.521 38.462 25.28 7.79 46.94 2.41
3591 4366 6.700081 TCAGTCCATAGCGTTATGTTCATAAC 59.300 38.462 19.62 19.62 35.84 1.89
3593 4368 6.399639 TCAGTCCATAGCGTTATGTTCATA 57.600 37.500 16.72 0.00 35.84 2.15
3594 4369 5.276461 TCAGTCCATAGCGTTATGTTCAT 57.724 39.130 16.72 0.00 35.84 2.57
3595 4370 4.729227 TCAGTCCATAGCGTTATGTTCA 57.271 40.909 16.72 0.00 35.84 3.18
3596 4371 9.239002 GATATATCAGTCCATAGCGTTATGTTC 57.761 37.037 16.72 9.77 35.84 3.18
3625 4409 7.009815 CGAAAATTACTGCATTGCTGAATGAAT 59.990 33.333 20.66 11.38 41.49 2.57
3629 4413 5.953183 TCGAAAATTACTGCATTGCTGAAT 58.047 33.333 20.66 12.78 0.00 2.57
3676 4460 5.117406 AGACACTTCAGGGAGTTCTTTTT 57.883 39.130 0.00 0.00 0.00 1.94
3677 4461 4.779993 AGACACTTCAGGGAGTTCTTTT 57.220 40.909 0.00 0.00 0.00 2.27
3678 4462 4.164221 TGAAGACACTTCAGGGAGTTCTTT 59.836 41.667 9.67 0.00 32.40 2.52
3679 4463 3.711704 TGAAGACACTTCAGGGAGTTCTT 59.288 43.478 9.67 5.43 33.64 2.52
3680 4464 3.309296 TGAAGACACTTCAGGGAGTTCT 58.691 45.455 9.67 0.00 0.00 3.01
3681 4465 3.658709 CTGAAGACACTTCAGGGAGTTC 58.341 50.000 24.87 0.00 41.54 3.01
3682 4466 3.760580 CTGAAGACACTTCAGGGAGTT 57.239 47.619 24.87 0.00 41.54 3.01
3688 4472 2.486472 ATGCCCTGAAGACACTTCAG 57.514 50.000 25.35 25.35 44.05 3.02
3689 4473 4.225942 AGATTATGCCCTGAAGACACTTCA 59.774 41.667 12.53 12.53 0.00 3.02
3690 4474 4.775236 AGATTATGCCCTGAAGACACTTC 58.225 43.478 0.00 0.00 0.00 3.01
3691 4475 4.851639 AGATTATGCCCTGAAGACACTT 57.148 40.909 0.00 0.00 0.00 3.16
3692 4476 4.851639 AAGATTATGCCCTGAAGACACT 57.148 40.909 0.00 0.00 0.00 3.55
3693 4477 4.943705 TGAAAGATTATGCCCTGAAGACAC 59.056 41.667 0.00 0.00 0.00 3.67
3694 4478 5.178096 TGAAAGATTATGCCCTGAAGACA 57.822 39.130 0.00 0.00 0.00 3.41
3695 4479 5.189180 ACTGAAAGATTATGCCCTGAAGAC 58.811 41.667 0.00 0.00 37.43 3.01
3696 4480 5.441718 ACTGAAAGATTATGCCCTGAAGA 57.558 39.130 0.00 0.00 37.43 2.87
3697 4481 5.238214 GCTACTGAAAGATTATGCCCTGAAG 59.762 44.000 0.00 0.00 37.43 3.02
3698 4482 5.104360 AGCTACTGAAAGATTATGCCCTGAA 60.104 40.000 0.00 0.00 37.43 3.02
3699 4483 4.410228 AGCTACTGAAAGATTATGCCCTGA 59.590 41.667 0.00 0.00 37.43 3.86
3700 4484 4.712476 AGCTACTGAAAGATTATGCCCTG 58.288 43.478 0.00 0.00 37.43 4.45
3701 4485 6.100424 AGTTAGCTACTGAAAGATTATGCCCT 59.900 38.462 0.00 0.00 37.43 5.19
3708 4492 7.616150 TGGAGTCTAGTTAGCTACTGAAAGATT 59.384 37.037 0.00 0.00 37.73 2.40
3720 4504 5.463724 GCATGTGTTATGGAGTCTAGTTAGC 59.536 44.000 0.00 0.00 0.00 3.09
3722 4506 5.423931 TGGCATGTGTTATGGAGTCTAGTTA 59.576 40.000 0.00 0.00 0.00 2.24
3742 4526 0.739462 CTCTTTACATCGCCGTGGCA 60.739 55.000 12.06 0.00 42.06 4.92
3746 4530 2.550978 CAATCCTCTTTACATCGCCGT 58.449 47.619 0.00 0.00 0.00 5.68
3747 4531 1.261619 GCAATCCTCTTTACATCGCCG 59.738 52.381 0.00 0.00 0.00 6.46
3750 4534 5.525012 TCATCAAGCAATCCTCTTTACATCG 59.475 40.000 0.00 0.00 0.00 3.84
3751 4535 6.317140 TGTCATCAAGCAATCCTCTTTACATC 59.683 38.462 0.00 0.00 0.00 3.06
3762 4546 4.082625 TGGATGTGTTGTCATCAAGCAATC 60.083 41.667 8.56 0.00 44.00 2.67
3779 4563 2.890945 GTGGTTAGCAGGTTTTGGATGT 59.109 45.455 0.00 0.00 0.00 3.06
3793 4577 8.158169 ACATTATTATGTGATGCTGTGGTTAG 57.842 34.615 0.00 0.00 43.29 2.34
3825 4611 8.148351 GCACCAAGTTATATTATACCTGTCTCA 58.852 37.037 0.00 0.00 0.00 3.27
3860 4646 3.907894 TTTTTACAAGTGGTCCGATGC 57.092 42.857 0.00 0.00 0.00 3.91
3875 4661 9.734620 GCAATCTGCTATACATCAACATTTTTA 57.265 29.630 0.00 0.00 40.96 1.52
3922 4710 0.322726 TAAACCCTTAGGCCGCAACC 60.323 55.000 0.00 0.00 36.11 3.77
3975 4775 2.614987 GCATGGAGATGTAGCCCTCATC 60.615 54.545 0.00 5.57 41.11 2.92
3990 4790 2.583024 TGTCTTTGACATGGCATGGA 57.417 45.000 29.49 14.83 37.67 3.41
4032 4832 6.614087 ACCATACGGGGTATATGTTAGCATAT 59.386 38.462 15.35 15.35 44.37 1.78
4034 4834 4.781087 ACCATACGGGGTATATGTTAGCAT 59.219 41.667 0.00 0.00 40.07 3.79
4077 4877 4.578871 CCAACTCATTGTACCTGTGATCA 58.421 43.478 0.00 0.00 33.60 2.92
4205 5005 3.050619 CGAACCTAACTGACTGTGTGAC 58.949 50.000 0.00 0.00 0.00 3.67
4212 5017 6.645790 TTTACTTCTCGAACCTAACTGACT 57.354 37.500 0.00 0.00 0.00 3.41
4220 5025 4.819630 TGCATTGTTTTACTTCTCGAACCT 59.180 37.500 0.00 0.00 0.00 3.50
4262 5067 3.248024 TCCTGTTCCCAAGTCTGTACAT 58.752 45.455 0.00 0.00 0.00 2.29
4310 5115 3.484407 GCATCCACATTCTTCTATGCCT 58.516 45.455 0.00 0.00 34.95 4.75
4323 5128 2.291209 AATTGTGACTGGCATCCACA 57.709 45.000 15.24 15.24 38.83 4.17
4331 5136 7.556844 AGGTTGACTATAGTAATTGTGACTGG 58.443 38.462 5.09 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.