Multiple sequence alignment - TraesCS2D01G159900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G159900 chr2D 100.000 8650 0 0 1 8650 102866788 102875437 0.000000e+00 15974
1 TraesCS2D01G159900 chr2B 95.459 4647 158 25 3413 8034 154248783 154253401 0.000000e+00 7363
2 TraesCS2D01G159900 chr2B 95.156 3303 108 33 107 3387 154244088 154247360 0.000000e+00 5166
3 TraesCS2D01G159900 chr2B 87.597 258 25 4 8396 8650 154253875 154254128 8.490000e-75 292
4 TraesCS2D01G159900 chr2B 89.610 154 15 1 6243 6396 106851909 106852061 2.460000e-45 195
5 TraesCS2D01G159900 chr2B 80.660 212 31 7 6487 6691 106852074 106852282 1.160000e-33 156
6 TraesCS2D01G159900 chr2A 95.749 4399 127 12 110 4474 101904346 101908718 0.000000e+00 7033
7 TraesCS2D01G159900 chr2A 93.421 2736 117 16 5340 8034 101909756 101912469 0.000000e+00 3997
8 TraesCS2D01G159900 chr2A 97.802 637 6 2 4547 5177 101908718 101909352 0.000000e+00 1092
9 TraesCS2D01G159900 chr2A 100.000 98 0 0 5204 5301 101909660 101909757 1.920000e-41 182
10 TraesCS2D01G159900 chr2A 80.889 225 32 8 6477 6694 485201418 485201638 5.370000e-37 167
11 TraesCS2D01G159900 chr2A 80.889 225 32 8 6477 6694 485221982 485222202 5.370000e-37 167
12 TraesCS2D01G159900 chr4B 88.158 2221 226 31 930 3135 96942013 96939815 0.000000e+00 2610
13 TraesCS2D01G159900 chr4B 80.994 2073 252 84 3191 5200 96939670 96937677 0.000000e+00 1515
14 TraesCS2D01G159900 chr4B 85.083 1267 143 31 5451 6694 96937275 96936032 0.000000e+00 1251
15 TraesCS2D01G159900 chr4D 87.849 2222 236 28 930 3134 66322064 66319860 0.000000e+00 2577
16 TraesCS2D01G159900 chr4D 84.964 1257 157 23 5451 6694 66317482 66316245 0.000000e+00 1245
17 TraesCS2D01G159900 chr4D 81.878 1214 151 40 3228 4410 66319736 66318561 0.000000e+00 959
18 TraesCS2D01G159900 chr4D 82.838 740 90 21 4516 5237 66318491 66317771 5.700000e-176 628
19 TraesCS2D01G159900 chr4A 88.033 2156 224 31 950 3090 515007092 515004956 0.000000e+00 2521
20 TraesCS2D01G159900 chr4A 85.625 1273 136 30 5451 6694 515002658 515001404 0.000000e+00 1293
21 TraesCS2D01G159900 chr4A 82.242 1267 155 43 3191 4425 515004796 515003568 0.000000e+00 1029
22 TraesCS2D01G159900 chr4A 83.609 726 81 22 4529 5237 515003553 515002849 0.000000e+00 647
23 TraesCS2D01G159900 chr4A 82.126 207 29 6 6494 6694 597816016 597816220 4.150000e-38 171
24 TraesCS2D01G159900 chrUn 93.369 377 21 4 2245 2620 479413074 479413447 9.810000e-154 555
25 TraesCS2D01G159900 chr6B 81.696 224 32 6 6477 6694 95971512 95971732 2.480000e-40 178
26 TraesCS2D01G159900 chr6B 95.312 64 2 1 3853 3916 686923767 686923829 5.530000e-17 100
27 TraesCS2D01G159900 chr7B 93.966 116 7 0 6281 6396 697907634 697907749 8.920000e-40 176
28 TraesCS2D01G159900 chr7D 89.655 116 9 3 4265 4380 218414526 218414414 2.520000e-30 145


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G159900 chr2D 102866788 102875437 8649 False 15974.000000 15974 100.000000 1 8650 1 chr2D.!!$F1 8649
1 TraesCS2D01G159900 chr2B 154244088 154254128 10040 False 4273.666667 7363 92.737333 107 8650 3 chr2B.!!$F2 8543
2 TraesCS2D01G159900 chr2A 101904346 101912469 8123 False 3076.000000 7033 96.743000 110 8034 4 chr2A.!!$F3 7924
3 TraesCS2D01G159900 chr4B 96936032 96942013 5981 True 1792.000000 2610 84.745000 930 6694 3 chr4B.!!$R1 5764
4 TraesCS2D01G159900 chr4D 66316245 66322064 5819 True 1352.250000 2577 84.382250 930 6694 4 chr4D.!!$R1 5764
5 TraesCS2D01G159900 chr4A 515001404 515007092 5688 True 1372.500000 2521 84.877250 950 6694 4 chr4A.!!$R1 5744

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
758 767 0.182537 CCCACTGTTCACTGTTGGGA 59.817 55.000 7.10 0.00 37.83 4.37 F
1150 1179 0.108186 GTCGTGCATCCATGAGGTCA 60.108 55.000 0.00 0.00 37.65 4.02 F
1171 1200 0.683828 TGTCCCCAACGGCTACGATA 60.684 55.000 0.00 0.00 44.60 2.92 F
2154 2189 1.206371 ACTAGGCCGCAATTACGTCTT 59.794 47.619 0.00 0.00 0.00 3.01 F
3552 5151 3.130164 TGGCGTTCCATGTTCATATTTGG 59.870 43.478 0.00 0.00 37.47 3.28 F
3802 5404 1.005294 CTTTTGTGGCGTGCTCATGC 61.005 55.000 5.55 5.55 42.40 4.06 F
4572 6192 1.340889 GCACAAATTCCCTTGCACTCA 59.659 47.619 0.00 0.00 34.97 3.41 F
5026 6658 1.592400 TACGACCACCTGAAGCGAGG 61.592 60.000 0.00 0.00 39.28 4.63 F
6184 8253 2.125350 CAACTCTCGGAGGCTGCC 60.125 66.667 11.65 11.65 33.35 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2554 2595 1.792949 CACACCGTCTCAGTAGCAAAC 59.207 52.381 0.00 0.0 0.00 2.93 R
2939 2984 6.267471 AGAAGGGCTTGTACAAAATTCAATCA 59.733 34.615 10.03 0.0 0.00 2.57 R
2972 3017 8.028354 CCACTCATCTACAAATGCATACAAAAA 58.972 33.333 0.00 0.0 0.00 1.94 R
3792 5394 1.915614 AAAGGAAGCGCATGAGCACG 61.916 55.000 23.73 5.1 42.27 5.34 R
5328 7303 4.141711 ACAACAGAAGGTAGAGCACAAGAA 60.142 41.667 0.00 0.0 0.00 2.52 R
5796 7865 2.422832 GCAGCTGAATGGAGGAGAAAAG 59.577 50.000 20.43 0.0 0.00 2.27 R
6148 8217 4.768968 AGTTGCATCATTGGCTTAGAAAGT 59.231 37.500 0.00 0.0 0.00 2.66 R
6745 8840 3.383620 TCAATGTCCCAAACAACATGC 57.616 42.857 0.00 0.0 42.37 4.06 R
7855 9996 0.321564 TTCAGGCATCGGACCACTTG 60.322 55.000 0.00 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.509716 AGGGTGCAGTAAACAGTTTTTAC 57.490 39.130 3.25 4.09 35.66 2.01
24 25 4.951094 AGGGTGCAGTAAACAGTTTTTACA 59.049 37.500 13.06 0.00 37.35 2.41
25 26 5.038683 GGGTGCAGTAAACAGTTTTTACAC 58.961 41.667 13.06 7.97 37.35 2.90
26 27 5.038683 GGTGCAGTAAACAGTTTTTACACC 58.961 41.667 17.47 17.47 37.35 4.16
27 28 5.163591 GGTGCAGTAAACAGTTTTTACACCT 60.164 40.000 21.50 3.92 37.35 4.00
28 29 6.327154 GTGCAGTAAACAGTTTTTACACCTT 58.673 36.000 13.06 0.00 37.35 3.50
29 30 6.809689 GTGCAGTAAACAGTTTTTACACCTTT 59.190 34.615 13.06 0.00 37.35 3.11
30 31 7.329962 GTGCAGTAAACAGTTTTTACACCTTTT 59.670 33.333 13.06 0.00 37.35 2.27
31 32 7.873505 TGCAGTAAACAGTTTTTACACCTTTTT 59.126 29.630 13.06 0.00 37.35 1.94
32 33 9.356433 GCAGTAAACAGTTTTTACACCTTTTTA 57.644 29.630 13.06 0.00 37.35 1.52
58 59 9.410556 AGATGAAATAGTTTTTGCATTGTACAC 57.589 29.630 0.00 0.00 0.00 2.90
59 60 9.190858 GATGAAATAGTTTTTGCATTGTACACA 57.809 29.630 0.00 0.00 0.00 3.72
60 61 8.346476 TGAAATAGTTTTTGCATTGTACACAC 57.654 30.769 0.00 0.00 0.00 3.82
61 62 7.976175 TGAAATAGTTTTTGCATTGTACACACA 59.024 29.630 0.00 0.00 0.00 3.72
75 76 7.397892 TTGTACACACAATTTTCCAAGAAGA 57.602 32.000 0.00 0.00 39.75 2.87
76 77 7.026631 TGTACACACAATTTTCCAAGAAGAG 57.973 36.000 0.00 0.00 0.00 2.85
77 78 6.601613 TGTACACACAATTTTCCAAGAAGAGT 59.398 34.615 0.00 0.00 0.00 3.24
78 79 5.894807 ACACACAATTTTCCAAGAAGAGTG 58.105 37.500 0.00 0.00 0.00 3.51
79 80 5.418840 ACACACAATTTTCCAAGAAGAGTGT 59.581 36.000 0.00 0.00 38.11 3.55
80 81 5.973565 CACACAATTTTCCAAGAAGAGTGTC 59.026 40.000 0.00 0.00 35.72 3.67
81 82 5.067805 ACACAATTTTCCAAGAAGAGTGTCC 59.932 40.000 0.00 0.00 32.84 4.02
82 83 5.300286 CACAATTTTCCAAGAAGAGTGTCCT 59.700 40.000 0.00 0.00 0.00 3.85
83 84 6.486657 CACAATTTTCCAAGAAGAGTGTCCTA 59.513 38.462 0.00 0.00 0.00 2.94
84 85 7.013274 CACAATTTTCCAAGAAGAGTGTCCTAA 59.987 37.037 0.00 0.00 0.00 2.69
85 86 7.725844 ACAATTTTCCAAGAAGAGTGTCCTAAT 59.274 33.333 0.00 0.00 0.00 1.73
86 87 8.579863 CAATTTTCCAAGAAGAGTGTCCTAATT 58.420 33.333 0.00 0.00 0.00 1.40
87 88 8.712228 ATTTTCCAAGAAGAGTGTCCTAATTT 57.288 30.769 0.00 0.00 0.00 1.82
88 89 7.745620 TTTCCAAGAAGAGTGTCCTAATTTC 57.254 36.000 0.00 0.00 0.00 2.17
89 90 5.479306 TCCAAGAAGAGTGTCCTAATTTCG 58.521 41.667 0.00 0.00 0.00 3.46
90 91 5.245301 TCCAAGAAGAGTGTCCTAATTTCGA 59.755 40.000 0.00 0.00 0.00 3.71
91 92 5.932303 CCAAGAAGAGTGTCCTAATTTCGAA 59.068 40.000 0.00 0.00 0.00 3.71
92 93 6.426937 CCAAGAAGAGTGTCCTAATTTCGAAA 59.573 38.462 13.91 13.91 0.00 3.46
93 94 7.291567 CAAGAAGAGTGTCCTAATTTCGAAAC 58.708 38.462 13.81 0.04 0.00 2.78
94 95 5.932883 AGAAGAGTGTCCTAATTTCGAAACC 59.067 40.000 13.81 0.00 0.00 3.27
95 96 4.576879 AGAGTGTCCTAATTTCGAAACCC 58.423 43.478 13.81 0.00 0.00 4.11
96 97 4.041198 AGAGTGTCCTAATTTCGAAACCCA 59.959 41.667 13.81 0.19 0.00 4.51
97 98 4.324267 AGTGTCCTAATTTCGAAACCCAG 58.676 43.478 13.81 10.10 0.00 4.45
98 99 4.041198 AGTGTCCTAATTTCGAAACCCAGA 59.959 41.667 13.81 5.62 0.00 3.86
99 100 4.392138 GTGTCCTAATTTCGAAACCCAGAG 59.608 45.833 13.81 6.11 0.00 3.35
100 101 3.374367 GTCCTAATTTCGAAACCCAGAGC 59.626 47.826 13.81 3.68 0.00 4.09
101 102 3.008594 TCCTAATTTCGAAACCCAGAGCA 59.991 43.478 13.81 0.00 0.00 4.26
102 103 3.947834 CCTAATTTCGAAACCCAGAGCAT 59.052 43.478 13.81 0.00 0.00 3.79
103 104 5.104693 TCCTAATTTCGAAACCCAGAGCATA 60.105 40.000 13.81 0.00 0.00 3.14
104 105 5.237344 CCTAATTTCGAAACCCAGAGCATAG 59.763 44.000 13.81 5.03 0.00 2.23
105 106 3.973206 TTTCGAAACCCAGAGCATAGA 57.027 42.857 6.47 0.00 0.00 1.98
106 107 4.487714 TTTCGAAACCCAGAGCATAGAT 57.512 40.909 6.47 0.00 0.00 1.98
107 108 5.607939 TTTCGAAACCCAGAGCATAGATA 57.392 39.130 6.47 0.00 0.00 1.98
108 109 4.585955 TCGAAACCCAGAGCATAGATAC 57.414 45.455 0.00 0.00 0.00 2.24
140 141 5.312838 GCCGTATTTTTGCATTAGTTTTGC 58.687 37.500 0.00 0.00 40.55 3.68
164 165 1.362224 TCAAAGCAGGCCCTTAGACT 58.638 50.000 0.00 0.00 0.00 3.24
415 420 4.201122 GCCTCCCTGCCATCCCAG 62.201 72.222 0.00 0.00 0.00 4.45
417 422 4.201122 CTCCCTGCCATCCCAGCC 62.201 72.222 0.00 0.00 0.00 4.85
471 476 0.897621 TGAGCTCGTGTCATCCATGT 59.102 50.000 9.64 0.00 0.00 3.21
568 575 1.221414 CCTGCTTAGCGTATCTTGCC 58.779 55.000 0.00 0.00 0.00 4.52
580 587 3.362986 CGTATCTTGCCGGAATTGATTCG 60.363 47.826 5.05 8.08 37.67 3.34
635 644 9.823647 TTCTGGCAATTTTCTGTGTATTTTTAA 57.176 25.926 0.00 0.00 0.00 1.52
636 645 9.995003 TCTGGCAATTTTCTGTGTATTTTTAAT 57.005 25.926 0.00 0.00 0.00 1.40
662 671 0.310543 TGTTTGATGCGGTGAAGTGC 59.689 50.000 0.00 0.00 0.00 4.40
719 728 3.964031 AGAACTTTCTGAGACACTCCACT 59.036 43.478 0.00 0.00 35.89 4.00
728 737 1.004277 GACACTCCACTCAGTTCGCG 61.004 60.000 0.00 0.00 0.00 5.87
731 740 0.240411 ACTCCACTCAGTTCGCGTAC 59.760 55.000 7.91 7.91 0.00 3.67
758 767 0.182537 CCCACTGTTCACTGTTGGGA 59.817 55.000 7.10 0.00 37.83 4.37
759 768 1.308998 CCACTGTTCACTGTTGGGAC 58.691 55.000 0.00 0.00 0.00 4.46
839 866 2.592102 TGGAATCTTTCAAGCTGGCT 57.408 45.000 0.00 0.00 0.00 4.75
849 876 2.436417 TCAAGCTGGCTAAATCCACAC 58.564 47.619 0.00 0.00 31.74 3.82
862 889 6.350445 GCTAAATCCACACCATTCTTGACATT 60.350 38.462 0.00 0.00 0.00 2.71
868 895 6.549364 TCCACACCATTCTTGACATTTTAAGT 59.451 34.615 0.00 0.00 0.00 2.24
871 898 5.634859 CACCATTCTTGACATTTTAAGTGGC 59.365 40.000 0.00 0.00 0.00 5.01
876 903 7.945033 TTCTTGACATTTTAAGTGGCAATTC 57.055 32.000 9.13 0.00 43.21 2.17
878 905 7.147312 TCTTGACATTTTAAGTGGCAATTCTG 58.853 34.615 9.13 0.90 43.21 3.02
881 908 5.540911 ACATTTTAAGTGGCAATTCTGGTG 58.459 37.500 2.32 2.67 0.00 4.17
897 924 1.590259 GTGTAGCGCTGCTCCTAGC 60.590 63.158 25.90 6.11 40.44 3.42
917 944 7.607991 TCCTAGCAATGTTTTCTTTCCTCTTAG 59.392 37.037 0.00 0.00 0.00 2.18
923 950 4.169264 TGTTTTCTTTCCTCTTAGGGGGTT 59.831 41.667 0.00 0.00 35.59 4.11
924 951 5.373257 TGTTTTCTTTCCTCTTAGGGGGTTA 59.627 40.000 0.00 0.00 35.59 2.85
926 953 6.730001 TTTCTTTCCTCTTAGGGGGTTAAT 57.270 37.500 0.00 0.00 35.59 1.40
987 1016 4.345257 TGTTCCTGATCTGATAAGGTAGGC 59.655 45.833 18.71 9.42 32.20 3.93
1071 1100 2.115291 GGACAATTCCTCCGCTGCC 61.115 63.158 0.00 0.00 39.13 4.85
1125 1154 2.668550 GCCAAGCGTCCGAACCTT 60.669 61.111 0.00 0.00 0.00 3.50
1150 1179 0.108186 GTCGTGCATCCATGAGGTCA 60.108 55.000 0.00 0.00 37.65 4.02
1171 1200 0.683828 TGTCCCCAACGGCTACGATA 60.684 55.000 0.00 0.00 44.60 2.92
1476 1505 3.018856 TGATGTTGGATTGATGACTGGC 58.981 45.455 0.00 0.00 0.00 4.85
2145 2180 1.339342 GGTTAGGAAACTAGGCCGCAA 60.339 52.381 0.00 0.00 45.45 4.85
2147 2182 3.014623 GTTAGGAAACTAGGCCGCAATT 58.985 45.455 0.00 0.00 45.45 2.32
2154 2189 1.206371 ACTAGGCCGCAATTACGTCTT 59.794 47.619 0.00 0.00 0.00 3.01
2353 2394 7.424803 TGTCGATGTCAAAACTTGATTTCAAT 58.575 30.769 0.00 0.00 42.47 2.57
2554 2595 3.737850 AGAAGGTCTTGTGAAAGCTCTG 58.262 45.455 0.00 0.00 0.00 3.35
2939 2984 7.993183 CGGGCATATGGATAGATTTATTAGGTT 59.007 37.037 4.56 0.00 0.00 3.50
2972 3017 6.808321 TTGTACAAGCCCTTCTCACTATAT 57.192 37.500 3.59 0.00 0.00 0.86
3000 3046 5.817296 TGTATGCATTTGTAGATGAGTGGAC 59.183 40.000 3.54 0.00 0.00 4.02
3145 3191 5.651139 ACTATGATCATGCAAGAAGCTTTGT 59.349 36.000 18.72 0.00 45.94 2.83
3176 3222 4.713553 TGTTGACTGAACAAGCCTAATGA 58.286 39.130 0.00 0.00 41.80 2.57
3552 5151 3.130164 TGGCGTTCCATGTTCATATTTGG 59.870 43.478 0.00 0.00 37.47 3.28
3691 5292 6.881602 GTCCTTCAAGACACTTATTTCATCCT 59.118 38.462 0.00 0.00 36.73 3.24
3792 5394 3.923017 AATACACTGAGCTTTTGTGGC 57.077 42.857 15.60 0.00 36.16 5.01
3802 5404 1.005294 CTTTTGTGGCGTGCTCATGC 61.005 55.000 5.55 5.55 42.40 4.06
3816 5418 2.621338 CTCATGCGCTTCCTTTAGTCA 58.379 47.619 9.73 0.00 0.00 3.41
3976 5581 1.384222 CGGAGGGCCAATTTACTGCC 61.384 60.000 6.18 0.00 44.59 4.85
4110 5715 1.667724 CTTGCTCTTCAGGCATTACCG 59.332 52.381 0.00 0.00 46.52 4.02
4167 5772 2.093235 AGCTACATTGCTGGACTCTTCC 60.093 50.000 0.00 0.00 42.33 3.46
4514 6132 8.499162 CCATTTTATTTTATTTGTTGAACCGCA 58.501 29.630 0.00 0.00 0.00 5.69
4572 6192 1.340889 GCACAAATTCCCTTGCACTCA 59.659 47.619 0.00 0.00 34.97 3.41
4573 6193 2.608752 GCACAAATTCCCTTGCACTCAG 60.609 50.000 0.00 0.00 34.97 3.35
5026 6658 1.592400 TACGACCACCTGAAGCGAGG 61.592 60.000 0.00 0.00 39.28 4.63
5319 7294 7.584108 TGCAATAGCTCAAATAACAATATCCG 58.416 34.615 0.00 0.00 42.74 4.18
5328 7303 8.731275 TCAAATAACAATATCCGTTGATGTCT 57.269 30.769 1.67 0.00 33.37 3.41
5520 7582 5.048083 TGACTTGGTTCATAAACTTGATGGC 60.048 40.000 0.00 0.00 35.61 4.40
5697 7764 3.381590 ACCAAAGAAAGGCTGAACTGAAC 59.618 43.478 0.00 0.00 0.00 3.18
5748 7815 2.356135 CGGGATTCACAGGTTGGTTAG 58.644 52.381 0.00 0.00 0.00 2.34
5796 7865 4.389077 ACAGAGCTAAATGTGTTCTTACGC 59.611 41.667 0.00 0.00 35.32 4.42
6148 8217 4.009675 AGCAAATACGCCTGAGAAATGAA 58.990 39.130 0.00 0.00 0.00 2.57
6184 8253 2.125350 CAACTCTCGGAGGCTGCC 60.125 66.667 11.65 11.65 33.35 4.85
6203 8272 2.159324 GCCAGAAAAATAGCTGAGGTGC 60.159 50.000 0.00 0.00 34.06 5.01
6204 8273 3.084039 CCAGAAAAATAGCTGAGGTGCA 58.916 45.455 0.00 0.00 34.06 4.57
6205 8274 3.698040 CCAGAAAAATAGCTGAGGTGCAT 59.302 43.478 0.00 0.00 34.06 3.96
6206 8275 4.883585 CCAGAAAAATAGCTGAGGTGCATA 59.116 41.667 0.00 0.00 34.06 3.14
6420 8504 2.427232 GCATGTGCAGTTTGTGATGT 57.573 45.000 0.00 0.00 41.59 3.06
6476 8566 9.472361 CAGCCATTGATAAAATCTTATTTCCAG 57.528 33.333 0.00 0.00 0.00 3.86
6562 8653 7.918562 TGGTTAATTCTGTTGCAGTTTCTTTAC 59.081 33.333 0.00 0.00 32.61 2.01
6694 8789 7.449704 GGCTGGATGAATTTCTAAATCAGGTAT 59.550 37.037 0.00 0.00 0.00 2.73
6745 8840 1.202498 TGCTCTCTCCATTCGCAGATG 60.202 52.381 0.00 0.00 35.04 2.90
6751 8846 1.674441 CTCCATTCGCAGATGCATGTT 59.326 47.619 2.46 0.00 42.21 2.71
6752 8847 1.402613 TCCATTCGCAGATGCATGTTG 59.597 47.619 2.46 3.39 42.21 3.33
7054 9149 4.080687 TGGATCAATGTGCAAGTGAATCA 58.919 39.130 0.00 0.00 0.00 2.57
7116 9211 3.581755 CATCCGTGTCGAGGAAGTTTAA 58.418 45.455 0.00 0.00 41.69 1.52
7127 9225 6.812160 GTCGAGGAAGTTTAATACTGTGACAT 59.188 38.462 0.00 0.00 37.12 3.06
7128 9226 7.331193 GTCGAGGAAGTTTAATACTGTGACATT 59.669 37.037 0.00 0.00 37.12 2.71
7170 9268 5.582665 AGTTGAAGTCTAGCCGAAATCATTC 59.417 40.000 0.00 0.00 0.00 2.67
7175 9273 4.101585 AGTCTAGCCGAAATCATTCCATGA 59.898 41.667 0.00 0.00 44.55 3.07
7189 9287 6.115446 TCATTCCATGACTCAATTACTCACC 58.885 40.000 0.00 0.00 33.59 4.02
7190 9288 5.497464 TTCCATGACTCAATTACTCACCA 57.503 39.130 0.00 0.00 0.00 4.17
7192 9290 5.875224 TCCATGACTCAATTACTCACCAAA 58.125 37.500 0.00 0.00 0.00 3.28
7220 9318 7.924103 AAAGCTAAACCAACTAAAATTGTCG 57.076 32.000 0.00 0.00 0.00 4.35
7221 9319 6.628919 AGCTAAACCAACTAAAATTGTCGT 57.371 33.333 0.00 0.00 0.00 4.34
7222 9320 7.733402 AGCTAAACCAACTAAAATTGTCGTA 57.267 32.000 0.00 0.00 0.00 3.43
7223 9321 7.578852 AGCTAAACCAACTAAAATTGTCGTAC 58.421 34.615 0.00 0.00 0.00 3.67
7278 9376 6.259387 GCGTGGTAAGTAGCTGGTATTTATTT 59.741 38.462 0.00 0.00 0.00 1.40
7287 9385 8.714906 AGTAGCTGGTATTTATTTGGATGTAGT 58.285 33.333 0.00 0.00 0.00 2.73
7314 9412 3.885484 CTTGTGTTGCCTCTGTACAAG 57.115 47.619 0.00 0.00 41.27 3.16
7325 9423 4.192317 CCTCTGTACAAGGAAATGTAGCC 58.808 47.826 15.18 0.00 36.51 3.93
7347 9445 4.333649 CCACATACCTATGTTGCTTCTGTG 59.666 45.833 0.00 0.00 43.99 3.66
7398 9520 7.556844 AGGTTGACTATAGTAATTGTGACTGG 58.443 38.462 5.09 0.00 0.00 4.00
7406 9528 2.291209 AATTGTGACTGGCATCCACA 57.709 45.000 15.24 15.24 38.83 4.17
7419 9541 3.484407 GCATCCACATTCTTCTATGCCT 58.516 45.455 0.00 0.00 34.95 4.75
7467 9589 3.248024 TCCTGTTCCCAAGTCTGTACAT 58.752 45.455 0.00 0.00 0.00 2.29
7509 9631 4.819630 TGCATTGTTTTACTTCTCGAACCT 59.180 37.500 0.00 0.00 0.00 3.50
7517 9639 6.645790 TTTACTTCTCGAACCTAACTGACT 57.354 37.500 0.00 0.00 0.00 3.41
7524 9651 3.050619 CGAACCTAACTGACTGTGTGAC 58.949 50.000 0.00 0.00 0.00 3.67
7652 9779 4.578871 CCAACTCATTGTACCTGTGATCA 58.421 43.478 0.00 0.00 33.60 2.92
7695 9822 4.781087 ACCATACGGGGTATATGTTAGCAT 59.219 41.667 0.00 0.00 40.07 3.79
7697 9824 6.614087 ACCATACGGGGTATATGTTAGCATAT 59.386 38.462 15.35 15.35 44.37 1.78
7739 9868 2.583024 TGTCTTTGACATGGCATGGA 57.417 45.000 29.49 14.83 37.67 3.41
7754 9883 2.614987 GCATGGAGATGTAGCCCTCATC 60.615 54.545 0.00 5.57 41.11 2.92
7807 9948 0.322726 TAAACCCTTAGGCCGCAACC 60.323 55.000 0.00 0.00 36.11 3.77
7854 9995 9.734620 GCAATCTGCTATACATCAACATTTTTA 57.265 29.630 0.00 0.00 40.96 1.52
7869 10012 3.907894 TTTTTACAAGTGGTCCGATGC 57.092 42.857 0.00 0.00 0.00 3.91
7904 10047 8.148351 GCACCAAGTTATATTATACCTGTCTCA 58.852 37.037 0.00 0.00 0.00 3.27
7936 10081 8.158169 ACATTATTATGTGATGCTGTGGTTAG 57.842 34.615 0.00 0.00 43.29 2.34
7950 10095 2.890945 GTGGTTAGCAGGTTTTGGATGT 59.109 45.455 0.00 0.00 0.00 3.06
7967 10112 4.082625 TGGATGTGTTGTCATCAAGCAATC 60.083 41.667 8.56 0.00 44.00 2.67
7978 10123 6.317140 TGTCATCAAGCAATCCTCTTTACATC 59.683 38.462 0.00 0.00 0.00 3.06
7979 10124 5.525012 TCATCAAGCAATCCTCTTTACATCG 59.475 40.000 0.00 0.00 0.00 3.84
7982 10127 1.261619 GCAATCCTCTTTACATCGCCG 59.738 52.381 0.00 0.00 0.00 6.46
7983 10128 2.550978 CAATCCTCTTTACATCGCCGT 58.449 47.619 0.00 0.00 0.00 5.68
7987 10132 0.739462 CTCTTTACATCGCCGTGGCA 60.739 55.000 12.06 0.00 42.06 4.92
8007 10152 5.423931 TGGCATGTGTTATGGAGTCTAGTTA 59.576 40.000 0.00 0.00 0.00 2.24
8009 10154 5.463724 GCATGTGTTATGGAGTCTAGTTAGC 59.536 44.000 0.00 0.00 0.00 3.09
8021 10166 7.616150 TGGAGTCTAGTTAGCTACTGAAAGATT 59.384 37.037 0.00 0.00 37.73 2.40
8028 10173 6.100424 AGTTAGCTACTGAAAGATTATGCCCT 59.900 38.462 0.00 0.00 37.43 5.19
8029 10174 4.712476 AGCTACTGAAAGATTATGCCCTG 58.288 43.478 0.00 0.00 37.43 4.45
8030 10175 4.410228 AGCTACTGAAAGATTATGCCCTGA 59.590 41.667 0.00 0.00 37.43 3.86
8032 10177 5.238214 GCTACTGAAAGATTATGCCCTGAAG 59.762 44.000 0.00 0.00 37.43 3.02
8033 10178 5.441718 ACTGAAAGATTATGCCCTGAAGA 57.558 39.130 0.00 0.00 37.43 2.87
8034 10179 5.189180 ACTGAAAGATTATGCCCTGAAGAC 58.811 41.667 0.00 0.00 37.43 3.01
8035 10180 5.178096 TGAAAGATTATGCCCTGAAGACA 57.822 39.130 0.00 0.00 0.00 3.41
8036 10181 4.943705 TGAAAGATTATGCCCTGAAGACAC 59.056 41.667 0.00 0.00 0.00 3.67
8037 10182 4.851639 AAGATTATGCCCTGAAGACACT 57.148 40.909 0.00 0.00 0.00 3.55
8039 10184 4.775236 AGATTATGCCCTGAAGACACTTC 58.225 43.478 0.00 0.00 0.00 3.01
8040 10185 4.225942 AGATTATGCCCTGAAGACACTTCA 59.774 41.667 12.53 12.53 0.00 3.02
8047 10192 3.760580 CTGAAGACACTTCAGGGAGTT 57.239 47.619 24.87 0.00 41.54 3.01
8048 10193 3.658709 CTGAAGACACTTCAGGGAGTTC 58.341 50.000 24.87 0.00 41.54 3.01
8049 10194 3.309296 TGAAGACACTTCAGGGAGTTCT 58.691 45.455 9.67 0.00 0.00 3.01
8051 10196 4.164221 TGAAGACACTTCAGGGAGTTCTTT 59.836 41.667 9.67 0.00 32.40 2.52
8052 10197 4.779993 AGACACTTCAGGGAGTTCTTTT 57.220 40.909 0.00 0.00 0.00 2.27
8053 10198 5.117406 AGACACTTCAGGGAGTTCTTTTT 57.883 39.130 0.00 0.00 0.00 1.94
8100 10245 5.953183 TCGAAAATTACTGCATTGCTGAAT 58.047 33.333 20.66 12.78 0.00 2.57
8104 10249 7.009815 CGAAAATTACTGCATTGCTGAATGAAT 59.990 33.333 20.66 11.38 41.49 2.57
8133 10278 9.239002 GATATATCAGTCCATAGCGTTATGTTC 57.761 37.037 16.72 9.77 35.84 3.18
8134 10279 4.729227 TCAGTCCATAGCGTTATGTTCA 57.271 40.909 16.72 0.00 35.84 3.18
8140 10285 7.011016 CAGTCCATAGCGTTATGTTCATAACAA 59.989 37.037 25.28 15.42 45.86 2.83
8141 10286 7.551262 AGTCCATAGCGTTATGTTCATAACAAA 59.449 33.333 25.28 15.17 45.86 2.83
8142 10287 7.638683 GTCCATAGCGTTATGTTCATAACAAAC 59.361 37.037 25.28 17.45 45.86 2.93
8143 10288 7.334671 TCCATAGCGTTATGTTCATAACAAACA 59.665 33.333 25.28 13.47 45.86 2.83
8144 10289 8.128582 CCATAGCGTTATGTTCATAACAAACAT 58.871 33.333 25.28 11.46 45.86 2.71
8145 10290 8.946935 CATAGCGTTATGTTCATAACAAACATG 58.053 33.333 25.28 19.31 44.75 3.21
8147 10292 7.589395 AGCGTTATGTTCATAACAAACATGAA 58.411 30.769 25.28 0.00 44.75 2.57
8150 10295 9.553418 CGTTATGTTCATAACAAACATGAATGA 57.447 29.630 25.28 0.00 44.75 2.57
8155 10300 9.500785 TGTTCATAACAAACATGAATGAGTCTA 57.499 29.630 0.00 0.00 42.63 2.59
8157 10302 9.725019 TTCATAACAAACATGAATGAGTCTAGT 57.275 29.630 0.00 0.00 37.46 2.57
8158 10303 9.725019 TCATAACAAACATGAATGAGTCTAGTT 57.275 29.630 0.00 0.00 29.55 2.24
8210 10377 7.155655 TGAAAATGCAGCAGATGTTGTTATA 57.844 32.000 0.00 0.00 0.00 0.98
8234 10401 5.183904 AGCAGAATTGTTGAATTACTGGTCC 59.816 40.000 0.00 0.00 35.18 4.46
8237 10404 7.086376 CAGAATTGTTGAATTACTGGTCCTTG 58.914 38.462 0.00 0.00 31.58 3.61
8238 10405 4.846779 TTGTTGAATTACTGGTCCTTGC 57.153 40.909 0.00 0.00 0.00 4.01
8240 10407 2.812011 GTTGAATTACTGGTCCTTGCGT 59.188 45.455 0.00 0.00 0.00 5.24
8244 10411 0.882927 TTACTGGTCCTTGCGTGTGC 60.883 55.000 0.00 0.00 43.20 4.57
8257 10424 2.192624 GCGTGTGCAGTTTGAAATGTT 58.807 42.857 0.00 0.00 42.15 2.71
8261 10428 5.051106 GCGTGTGCAGTTTGAAATGTTAAAT 60.051 36.000 0.00 0.00 42.15 1.40
8263 10430 7.306283 GCGTGTGCAGTTTGAAATGTTAAATTA 60.306 33.333 0.00 0.00 42.15 1.40
8310 10629 3.253921 TGCATGATCAAACTGTGACCTTG 59.746 43.478 0.00 0.00 39.72 3.61
8311 10630 3.254166 GCATGATCAAACTGTGACCTTGT 59.746 43.478 0.00 0.00 39.72 3.16
8315 10634 5.132502 TGATCAAACTGTGACCTTGTCATT 58.867 37.500 0.00 0.00 44.63 2.57
8316 10635 4.898829 TCAAACTGTGACCTTGTCATTG 57.101 40.909 0.00 1.74 44.63 2.82
8317 10636 4.269183 TCAAACTGTGACCTTGTCATTGT 58.731 39.130 0.00 0.56 44.63 2.71
8318 10637 5.432645 TCAAACTGTGACCTTGTCATTGTA 58.567 37.500 0.00 0.00 44.63 2.41
8319 10638 6.061441 TCAAACTGTGACCTTGTCATTGTAT 58.939 36.000 0.00 0.00 44.63 2.29
8320 10639 6.545666 TCAAACTGTGACCTTGTCATTGTATT 59.454 34.615 0.00 0.00 44.63 1.89
8321 10640 5.947228 ACTGTGACCTTGTCATTGTATTG 57.053 39.130 0.00 0.00 44.63 1.90
8322 10641 5.376625 ACTGTGACCTTGTCATTGTATTGT 58.623 37.500 0.00 0.00 44.63 2.71
8323 10642 6.530120 ACTGTGACCTTGTCATTGTATTGTA 58.470 36.000 0.00 0.00 44.63 2.41
8324 10643 6.426937 ACTGTGACCTTGTCATTGTATTGTAC 59.573 38.462 0.00 0.00 44.63 2.90
8325 10644 6.292150 TGTGACCTTGTCATTGTATTGTACA 58.708 36.000 0.00 0.00 44.63 2.90
8326 10645 6.426633 TGTGACCTTGTCATTGTATTGTACAG 59.573 38.462 0.00 0.00 44.63 2.74
8327 10646 5.411361 TGACCTTGTCATTGTATTGTACAGC 59.589 40.000 0.00 0.00 37.67 4.40
8328 10647 5.560724 ACCTTGTCATTGTATTGTACAGCT 58.439 37.500 0.00 0.00 40.24 4.24
8329 10648 6.707290 ACCTTGTCATTGTATTGTACAGCTA 58.293 36.000 0.00 0.00 40.24 3.32
8370 10689 1.302832 CCCACACTCTCACAAGCCC 60.303 63.158 0.00 0.00 0.00 5.19
8371 10690 1.757306 CCACACTCTCACAAGCCCT 59.243 57.895 0.00 0.00 0.00 5.19
8372 10691 0.109342 CCACACTCTCACAAGCCCTT 59.891 55.000 0.00 0.00 0.00 3.95
8373 10692 1.477558 CCACACTCTCACAAGCCCTTT 60.478 52.381 0.00 0.00 0.00 3.11
8375 10694 3.476552 CACACTCTCACAAGCCCTTTAA 58.523 45.455 0.00 0.00 0.00 1.52
8376 10695 4.074970 CACACTCTCACAAGCCCTTTAAT 58.925 43.478 0.00 0.00 0.00 1.40
8377 10696 4.520492 CACACTCTCACAAGCCCTTTAATT 59.480 41.667 0.00 0.00 0.00 1.40
8378 10697 5.010012 CACACTCTCACAAGCCCTTTAATTT 59.990 40.000 0.00 0.00 0.00 1.82
8379 10698 6.206634 CACACTCTCACAAGCCCTTTAATTTA 59.793 38.462 0.00 0.00 0.00 1.40
8380 10699 6.775629 ACACTCTCACAAGCCCTTTAATTTAA 59.224 34.615 0.00 0.00 0.00 1.52
8381 10700 7.040409 ACACTCTCACAAGCCCTTTAATTTAAG 60.040 37.037 0.00 0.00 0.00 1.85
8383 10702 7.724061 ACTCTCACAAGCCCTTTAATTTAAGAA 59.276 33.333 5.78 0.00 0.00 2.52
8384 10703 8.650143 TCTCACAAGCCCTTTAATTTAAGAAT 57.350 30.769 5.78 0.00 0.00 2.40
8385 10704 8.522830 TCTCACAAGCCCTTTAATTTAAGAATG 58.477 33.333 5.78 2.48 0.00 2.67
8386 10705 7.096551 TCACAAGCCCTTTAATTTAAGAATGC 58.903 34.615 5.78 5.71 0.00 3.56
8387 10706 6.313658 CACAAGCCCTTTAATTTAAGAATGCC 59.686 38.462 5.78 0.00 0.00 4.40
8388 10707 6.213397 ACAAGCCCTTTAATTTAAGAATGCCT 59.787 34.615 5.78 0.00 0.00 4.75
8389 10708 6.874278 AGCCCTTTAATTTAAGAATGCCTT 57.126 33.333 5.78 0.00 38.87 4.35
8390 10709 7.971368 AGCCCTTTAATTTAAGAATGCCTTA 57.029 32.000 5.78 0.00 36.34 2.69
8391 10710 8.374184 AGCCCTTTAATTTAAGAATGCCTTAA 57.626 30.769 5.78 0.00 43.52 1.85
8392 10711 8.992349 AGCCCTTTAATTTAAGAATGCCTTAAT 58.008 29.630 5.78 0.00 44.30 1.40
8393 10712 9.045223 GCCCTTTAATTTAAGAATGCCTTAATG 57.955 33.333 5.78 0.00 44.30 1.90
8432 10751 0.689623 AACTGGCCTTCAGAGGTGAG 59.310 55.000 3.32 0.00 46.18 3.51
8433 10752 0.472734 ACTGGCCTTCAGAGGTGAGT 60.473 55.000 3.32 0.00 46.18 3.41
8435 10754 0.471780 TGGCCTTCAGAGGTGAGTGA 60.472 55.000 3.32 0.00 45.44 3.41
8436 10755 0.036858 GGCCTTCAGAGGTGAGTGAC 60.037 60.000 0.00 0.00 45.44 3.67
8437 10756 0.389166 GCCTTCAGAGGTGAGTGACG 60.389 60.000 0.00 0.00 45.44 4.35
8438 10757 1.248486 CCTTCAGAGGTGAGTGACGA 58.752 55.000 0.00 0.00 38.32 4.20
8439 10758 1.068194 CCTTCAGAGGTGAGTGACGAC 60.068 57.143 0.00 0.00 38.32 4.34
8440 10759 1.609072 CTTCAGAGGTGAGTGACGACA 59.391 52.381 0.00 0.00 32.98 4.35
8441 10760 0.952280 TCAGAGGTGAGTGACGACAC 59.048 55.000 10.10 10.10 46.24 3.67
8462 10781 6.260377 ACACTAAAGCGGTTTAAGAAACAAC 58.740 36.000 19.35 0.00 43.15 3.32
8468 10787 3.860536 GCGGTTTAAGAAACAACAGCAAA 59.139 39.130 4.60 0.00 41.87 3.68
8474 10793 8.874816 GGTTTAAGAAACAACAGCAAACAAATA 58.125 29.630 4.60 0.00 43.15 1.40
8507 10826 5.473504 CAGGAACTTTGTACATAGCCAAACT 59.526 40.000 12.62 2.92 34.60 2.66
8508 10827 6.016276 CAGGAACTTTGTACATAGCCAAACTT 60.016 38.462 12.62 0.00 34.60 2.66
8516 10835 7.144722 TGTACATAGCCAAACTTCTCAAATG 57.855 36.000 0.00 0.00 0.00 2.32
8533 10852 4.816385 TCAAATGATCGCCTCCAGAATTAC 59.184 41.667 0.00 0.00 0.00 1.89
8538 10857 1.822990 TCGCCTCCAGAATTACGAACT 59.177 47.619 0.00 0.00 0.00 3.01
8562 10881 6.504398 TGGCTACATAATCTAGTTTCTGACG 58.496 40.000 6.06 0.00 0.00 4.35
8567 10886 9.737427 CTACATAATCTAGTTTCTGACGATGTT 57.263 33.333 6.06 0.00 0.00 2.71
8583 10905 4.274214 ACGATGTTCAATACCATCATGCTG 59.726 41.667 0.00 0.00 0.00 4.41
8631 10953 3.058914 GCCATGACACAGTACAGTTCAAC 60.059 47.826 0.00 0.00 0.00 3.18
8636 10958 4.100963 TGACACAGTACAGTTCAACCAGAT 59.899 41.667 0.00 0.00 0.00 2.90
8641 10963 5.304614 ACAGTACAGTTCAACCAGATACACT 59.695 40.000 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 5.038683 GTGTAAAAACTGTTTACTGCACCC 58.961 41.667 17.79 3.46 36.23 4.61
3 4 5.038683 GGTGTAAAAACTGTTTACTGCACC 58.961 41.667 25.28 25.28 36.23 5.01
4 5 5.886992 AGGTGTAAAAACTGTTTACTGCAC 58.113 37.500 19.20 19.20 36.23 4.57
6 7 7.821595 AAAAGGTGTAAAAACTGTTTACTGC 57.178 32.000 6.16 1.84 36.23 4.40
32 33 9.410556 GTGTACAATGCAAAAACTATTTCATCT 57.589 29.630 0.00 0.00 0.00 2.90
33 34 9.190858 TGTGTACAATGCAAAAACTATTTCATC 57.809 29.630 0.00 0.00 0.00 2.92
34 35 8.977505 GTGTGTACAATGCAAAAACTATTTCAT 58.022 29.630 0.00 0.00 0.00 2.57
35 36 7.976175 TGTGTGTACAATGCAAAAACTATTTCA 59.024 29.630 0.00 0.00 32.88 2.69
36 37 8.346476 TGTGTGTACAATGCAAAAACTATTTC 57.654 30.769 0.00 0.00 32.88 2.17
37 38 8.709386 TTGTGTGTACAATGCAAAAACTATTT 57.291 26.923 0.00 0.00 41.66 1.40
52 53 6.601613 ACTCTTCTTGGAAAATTGTGTGTACA 59.398 34.615 0.00 0.00 34.31 2.90
53 54 6.912591 CACTCTTCTTGGAAAATTGTGTGTAC 59.087 38.462 0.00 0.00 0.00 2.90
54 55 6.601613 ACACTCTTCTTGGAAAATTGTGTGTA 59.398 34.615 0.00 0.00 35.26 2.90
55 56 5.418840 ACACTCTTCTTGGAAAATTGTGTGT 59.581 36.000 0.00 0.00 35.26 3.72
56 57 5.894807 ACACTCTTCTTGGAAAATTGTGTG 58.105 37.500 0.00 0.00 35.26 3.82
57 58 5.067805 GGACACTCTTCTTGGAAAATTGTGT 59.932 40.000 0.00 0.00 38.57 3.72
58 59 5.300286 AGGACACTCTTCTTGGAAAATTGTG 59.700 40.000 0.00 0.00 0.00 3.33
59 60 5.449553 AGGACACTCTTCTTGGAAAATTGT 58.550 37.500 0.00 0.00 0.00 2.71
60 61 7.510549 TTAGGACACTCTTCTTGGAAAATTG 57.489 36.000 0.00 0.00 0.00 2.32
61 62 8.712228 AATTAGGACACTCTTCTTGGAAAATT 57.288 30.769 0.00 0.00 0.00 1.82
62 63 8.712228 AAATTAGGACACTCTTCTTGGAAAAT 57.288 30.769 0.00 0.00 0.00 1.82
63 64 7.041372 CGAAATTAGGACACTCTTCTTGGAAAA 60.041 37.037 0.00 0.00 0.00 2.29
64 65 6.426937 CGAAATTAGGACACTCTTCTTGGAAA 59.573 38.462 0.00 0.00 0.00 3.13
65 66 5.932303 CGAAATTAGGACACTCTTCTTGGAA 59.068 40.000 0.00 0.00 0.00 3.53
66 67 5.245301 TCGAAATTAGGACACTCTTCTTGGA 59.755 40.000 0.00 0.00 0.00 3.53
67 68 5.479306 TCGAAATTAGGACACTCTTCTTGG 58.521 41.667 0.00 0.00 0.00 3.61
68 69 7.291567 GTTTCGAAATTAGGACACTCTTCTTG 58.708 38.462 14.69 0.00 0.00 3.02
69 70 6.427242 GGTTTCGAAATTAGGACACTCTTCTT 59.573 38.462 14.69 0.00 0.00 2.52
70 71 5.932883 GGTTTCGAAATTAGGACACTCTTCT 59.067 40.000 14.69 0.00 0.00 2.85
71 72 5.121925 GGGTTTCGAAATTAGGACACTCTTC 59.878 44.000 14.69 0.00 0.00 2.87
72 73 5.001874 GGGTTTCGAAATTAGGACACTCTT 58.998 41.667 14.69 0.00 0.00 2.85
73 74 4.041198 TGGGTTTCGAAATTAGGACACTCT 59.959 41.667 14.69 0.00 0.00 3.24
74 75 4.320870 TGGGTTTCGAAATTAGGACACTC 58.679 43.478 14.69 0.00 0.00 3.51
75 76 4.041198 TCTGGGTTTCGAAATTAGGACACT 59.959 41.667 14.69 0.00 0.00 3.55
76 77 4.320870 TCTGGGTTTCGAAATTAGGACAC 58.679 43.478 14.69 2.00 0.00 3.67
77 78 4.575885 CTCTGGGTTTCGAAATTAGGACA 58.424 43.478 14.69 6.44 0.00 4.02
78 79 3.374367 GCTCTGGGTTTCGAAATTAGGAC 59.626 47.826 14.69 0.00 0.00 3.85
79 80 3.008594 TGCTCTGGGTTTCGAAATTAGGA 59.991 43.478 14.69 9.56 0.00 2.94
80 81 3.343617 TGCTCTGGGTTTCGAAATTAGG 58.656 45.455 14.69 5.81 0.00 2.69
81 82 6.049149 TCTATGCTCTGGGTTTCGAAATTAG 58.951 40.000 14.69 12.30 0.00 1.73
82 83 5.984725 TCTATGCTCTGGGTTTCGAAATTA 58.015 37.500 14.69 2.91 0.00 1.40
83 84 4.843728 TCTATGCTCTGGGTTTCGAAATT 58.156 39.130 14.69 0.00 0.00 1.82
84 85 4.487714 TCTATGCTCTGGGTTTCGAAAT 57.512 40.909 14.69 0.00 0.00 2.17
85 86 3.973206 TCTATGCTCTGGGTTTCGAAA 57.027 42.857 6.47 6.47 0.00 3.46
86 87 4.404394 TGTATCTATGCTCTGGGTTTCGAA 59.596 41.667 0.00 0.00 0.00 3.71
87 88 3.958147 TGTATCTATGCTCTGGGTTTCGA 59.042 43.478 0.00 0.00 0.00 3.71
88 89 4.322080 TGTATCTATGCTCTGGGTTTCG 57.678 45.455 0.00 0.00 0.00 3.46
89 90 5.703130 GGAATGTATCTATGCTCTGGGTTTC 59.297 44.000 0.00 0.00 0.00 2.78
90 91 5.456763 GGGAATGTATCTATGCTCTGGGTTT 60.457 44.000 0.00 0.00 0.00 3.27
91 92 4.042187 GGGAATGTATCTATGCTCTGGGTT 59.958 45.833 0.00 0.00 0.00 4.11
92 93 3.584848 GGGAATGTATCTATGCTCTGGGT 59.415 47.826 0.00 0.00 0.00 4.51
93 94 3.368843 CGGGAATGTATCTATGCTCTGGG 60.369 52.174 0.00 0.00 0.00 4.45
94 95 3.368843 CCGGGAATGTATCTATGCTCTGG 60.369 52.174 0.00 0.00 0.00 3.86
95 96 3.368843 CCCGGGAATGTATCTATGCTCTG 60.369 52.174 18.48 0.00 0.00 3.35
96 97 2.834549 CCCGGGAATGTATCTATGCTCT 59.165 50.000 18.48 0.00 0.00 4.09
97 98 2.678190 GCCCGGGAATGTATCTATGCTC 60.678 54.545 29.31 0.00 0.00 4.26
98 99 1.279271 GCCCGGGAATGTATCTATGCT 59.721 52.381 29.31 0.00 0.00 3.79
99 100 1.679032 GGCCCGGGAATGTATCTATGC 60.679 57.143 29.31 2.72 0.00 3.14
100 101 1.405526 CGGCCCGGGAATGTATCTATG 60.406 57.143 29.31 0.00 0.00 2.23
101 102 0.902531 CGGCCCGGGAATGTATCTAT 59.097 55.000 29.31 0.00 0.00 1.98
102 103 0.470456 ACGGCCCGGGAATGTATCTA 60.470 55.000 29.31 0.00 0.00 1.98
103 104 0.470456 TACGGCCCGGGAATGTATCT 60.470 55.000 29.31 0.00 0.00 1.98
104 105 0.611714 ATACGGCCCGGGAATGTATC 59.388 55.000 29.31 3.51 0.00 2.24
105 106 1.061546 AATACGGCCCGGGAATGTAT 58.938 50.000 29.31 23.77 0.00 2.29
106 107 0.838608 AAATACGGCCCGGGAATGTA 59.161 50.000 29.31 22.56 0.00 2.29
107 108 0.033894 AAAATACGGCCCGGGAATGT 60.034 50.000 29.31 21.02 0.00 2.71
108 109 1.107945 AAAAATACGGCCCGGGAATG 58.892 50.000 29.31 15.64 0.00 2.67
140 141 3.830192 GGGCCTGCTTTGATGGCG 61.830 66.667 0.84 0.00 46.97 5.69
164 165 0.252881 ACATGAGGCCAGGAGAGGAA 60.253 55.000 5.01 0.00 0.00 3.36
415 420 1.736282 CAAAAATTGCGGACGGGGC 60.736 57.895 0.00 0.00 0.00 5.80
471 476 3.903090 TCGAGGTCAGGGGTTTAACTAAA 59.097 43.478 0.00 0.00 0.00 1.85
568 575 2.806288 AGCGAAACGAATCAATTCCG 57.194 45.000 0.00 0.00 33.28 4.30
580 587 2.227149 ACCGGGAACATAAAAGCGAAAC 59.773 45.455 6.32 0.00 0.00 2.78
635 644 7.701924 CACTTCACCGCATCAAACATTTATAAT 59.298 33.333 0.00 0.00 0.00 1.28
636 645 7.026562 CACTTCACCGCATCAAACATTTATAA 58.973 34.615 0.00 0.00 0.00 0.98
637 646 6.550843 CACTTCACCGCATCAAACATTTATA 58.449 36.000 0.00 0.00 0.00 0.98
638 647 5.401550 CACTTCACCGCATCAAACATTTAT 58.598 37.500 0.00 0.00 0.00 1.40
644 653 0.593128 AGCACTTCACCGCATCAAAC 59.407 50.000 0.00 0.00 0.00 2.93
652 661 7.307396 CCATATACAGAAATTAGCACTTCACCG 60.307 40.741 0.00 0.00 0.00 4.94
662 671 5.256474 CCCCCAGCCATATACAGAAATTAG 58.744 45.833 0.00 0.00 0.00 1.73
728 737 1.226030 AACAGTGGGCGCTTTCGTAC 61.226 55.000 7.64 0.00 38.14 3.67
731 740 2.250939 TGAACAGTGGGCGCTTTCG 61.251 57.895 7.64 0.00 39.07 3.46
739 748 0.182537 TCCCAACAGTGAACAGTGGG 59.817 55.000 13.14 5.75 36.10 4.61
758 767 7.817418 ACAGTACCAAAAACAGATTATGTGT 57.183 32.000 0.00 0.00 43.00 3.72
759 768 8.134895 ACAACAGTACCAAAAACAGATTATGTG 58.865 33.333 0.00 0.00 43.00 3.21
839 866 7.537596 AAATGTCAAGAATGGTGTGGATTTA 57.462 32.000 0.00 0.00 0.00 1.40
849 876 5.782047 TGCCACTTAAAATGTCAAGAATGG 58.218 37.500 0.00 0.00 0.00 3.16
862 889 4.217550 GCTACACCAGAATTGCCACTTAAA 59.782 41.667 0.00 0.00 0.00 1.52
868 895 1.305219 GCGCTACACCAGAATTGCCA 61.305 55.000 0.00 0.00 0.00 4.92
871 898 0.097674 GCAGCGCTACACCAGAATTG 59.902 55.000 10.99 0.00 0.00 2.32
876 903 1.667154 TAGGAGCAGCGCTACACCAG 61.667 60.000 23.72 6.35 42.99 4.00
878 905 1.066587 CTAGGAGCAGCGCTACACC 59.933 63.158 15.59 15.59 42.99 4.16
897 924 5.185828 CCCCCTAAGAGGAAAGAAAACATTG 59.814 44.000 0.00 0.00 37.67 2.82
917 944 7.847096 ACATCAGAAACATTTAATTAACCCCC 58.153 34.615 0.00 0.00 0.00 5.40
924 951 9.807649 GCAGGATAACATCAGAAACATTTAATT 57.192 29.630 0.00 0.00 0.00 1.40
926 953 8.461222 CAGCAGGATAACATCAGAAACATTTAA 58.539 33.333 0.00 0.00 0.00 1.52
987 1016 5.521735 CACCTCTTCCATTTCTTCGATACAG 59.478 44.000 0.00 0.00 0.00 2.74
1103 1132 3.158537 TTCGGACGCTTGGCAGTCA 62.159 57.895 7.54 0.00 35.22 3.41
1150 1179 2.939261 CGTAGCCGTTGGGGACAGT 61.939 63.158 0.00 0.00 44.54 3.55
1171 1200 1.274703 ACGGCCTCATCCTTGGACAT 61.275 55.000 0.00 0.00 0.00 3.06
1476 1505 1.291184 TTGGCTGAAGCGTGACATCG 61.291 55.000 0.00 0.00 43.26 3.84
2145 2180 9.924650 AGTGAATACTGAAAAGTAAGACGTAAT 57.075 29.630 0.00 0.00 35.34 1.89
2201 2240 5.049818 GCGAGGATATGAGTGGAAAGAATTG 60.050 44.000 0.00 0.00 0.00 2.32
2353 2394 7.123697 TCGATGTTATCCTTTTCTTCCTGAGTA 59.876 37.037 0.00 0.00 0.00 2.59
2554 2595 1.792949 CACACCGTCTCAGTAGCAAAC 59.207 52.381 0.00 0.00 0.00 2.93
2939 2984 6.267471 AGAAGGGCTTGTACAAAATTCAATCA 59.733 34.615 10.03 0.00 0.00 2.57
2972 3017 8.028354 CCACTCATCTACAAATGCATACAAAAA 58.972 33.333 0.00 0.00 0.00 1.94
3568 5167 5.163723 GCAACTGCAAGCTAAGTGAATATCA 60.164 40.000 0.00 0.00 41.59 2.15
3631 5232 4.206200 CGCAAAGTGAATGTTAACACAACC 59.794 41.667 11.22 0.00 39.18 3.77
3792 5394 1.915614 AAAGGAAGCGCATGAGCACG 61.916 55.000 23.73 5.10 42.27 5.34
3802 5404 4.611581 GCAAAAGTCTGACTAAAGGAAGCG 60.612 45.833 11.30 0.00 0.00 4.68
3816 5418 7.885399 ACTCATATTAAGACCAAGCAAAAGTCT 59.115 33.333 0.00 0.00 42.58 3.24
3976 5581 2.935849 TGAATTCCGGATCACATGTTCG 59.064 45.455 4.15 0.00 0.00 3.95
4110 5715 8.329203 ACTTTGTAATCTTCTGAATGACTTCC 57.671 34.615 0.00 0.00 0.00 3.46
4167 5772 7.730364 ACAATTAAAATAGCATACCTCTCCG 57.270 36.000 0.00 0.00 0.00 4.63
4511 6129 4.145876 TCATAGTCAAAACAAAGCTGCG 57.854 40.909 0.00 0.00 0.00 5.18
4514 6132 6.040842 ACCAACATCATAGTCAAAACAAAGCT 59.959 34.615 0.00 0.00 0.00 3.74
5201 6843 5.961396 ATCCTGATGAGATATTTTGCAGC 57.039 39.130 0.00 0.00 0.00 5.25
5319 7294 4.390297 GGTAGAGCACAAGAAGACATCAAC 59.610 45.833 0.00 0.00 0.00 3.18
5328 7303 4.141711 ACAACAGAAGGTAGAGCACAAGAA 60.142 41.667 0.00 0.00 0.00 2.52
5485 7547 8.918202 TTATGAACCAAGTCAACTAATTCAGT 57.082 30.769 8.63 0.00 40.05 3.41
5520 7582 5.111989 TGAGAACATAATTTCTGCTCGAGG 58.888 41.667 15.58 0.00 35.90 4.63
5697 7764 8.870160 TTGACTTTAGTTGTTGAATTTCATGG 57.130 30.769 0.00 0.00 0.00 3.66
5748 7815 7.274442 ACGAACGATCAAGTATACAAAGAAC 57.726 36.000 5.50 0.00 0.00 3.01
5796 7865 2.422832 GCAGCTGAATGGAGGAGAAAAG 59.577 50.000 20.43 0.00 0.00 2.27
5972 8041 8.978874 ACTGAACATGGTATCATATTAAGCAA 57.021 30.769 0.00 0.00 24.06 3.91
6026 8095 7.013942 ACCTAGTCACGTACAGCATATTAATGA 59.986 37.037 0.00 0.00 34.84 2.57
6148 8217 4.768968 AGTTGCATCATTGGCTTAGAAAGT 59.231 37.500 0.00 0.00 0.00 2.66
6184 8253 4.978083 ATGCACCTCAGCTATTTTTCTG 57.022 40.909 0.00 0.00 34.99 3.02
6203 8272 9.764363 ATAGTGGTGATACAACAAGTATGTATG 57.236 33.333 4.07 0.00 43.39 2.39
6476 8566 7.168637 GGCATGATAATGATCAAATGTCACAAC 59.831 37.037 11.69 6.30 45.23 3.32
6562 8653 9.911138 CATGATAATCAGGAATCGATATAGAGG 57.089 37.037 0.00 0.00 27.97 3.69
6745 8840 3.383620 TCAATGTCCCAAACAACATGC 57.616 42.857 0.00 0.00 42.37 4.06
6751 8846 5.191727 AGACCATATCAATGTCCCAAACA 57.808 39.130 0.00 0.00 43.51 2.83
6752 8847 4.580580 GGAGACCATATCAATGTCCCAAAC 59.419 45.833 0.00 0.00 0.00 2.93
7054 9149 7.105588 GGGATATTCAAAGGCAGACAATTTTT 58.894 34.615 0.00 0.00 0.00 1.94
7116 9211 5.466728 GTCATATTCGGCAATGTCACAGTAT 59.533 40.000 0.00 0.00 0.00 2.12
7127 9225 3.852286 ACTTGTACGTCATATTCGGCAA 58.148 40.909 0.00 5.92 0.00 4.52
7128 9226 3.513680 ACTTGTACGTCATATTCGGCA 57.486 42.857 0.00 0.00 0.00 5.69
7170 9268 6.573664 TTTTGGTGAGTAATTGAGTCATGG 57.426 37.500 0.00 0.00 39.73 3.66
7211 9309 3.676646 GGCAGTACGAGTACGACAATTTT 59.323 43.478 7.64 0.00 42.66 1.82
7212 9310 3.057033 AGGCAGTACGAGTACGACAATTT 60.057 43.478 7.64 0.00 42.66 1.82
7218 9316 2.034104 ATCAGGCAGTACGAGTACGA 57.966 50.000 7.64 0.18 42.66 3.43
7219 9317 2.846039 AATCAGGCAGTACGAGTACG 57.154 50.000 7.64 4.78 45.75 3.67
7220 9318 4.106029 TGAAATCAGGCAGTACGAGTAC 57.894 45.455 5.32 5.32 36.35 2.73
7221 9319 5.507482 GCTATGAAATCAGGCAGTACGAGTA 60.507 44.000 0.00 0.00 0.00 2.59
7222 9320 3.895232 ATGAAATCAGGCAGTACGAGT 57.105 42.857 0.00 0.00 0.00 4.18
7223 9321 3.738282 GCTATGAAATCAGGCAGTACGAG 59.262 47.826 0.00 0.00 0.00 4.18
7278 9376 3.135712 ACACAAGTCAACCACTACATCCA 59.864 43.478 0.00 0.00 32.30 3.41
7287 9385 1.064758 AGAGGCAACACAAGTCAACCA 60.065 47.619 0.00 0.00 41.41 3.67
7314 9412 5.621193 ACATAGGTATGTGGCTACATTTCC 58.379 41.667 21.52 21.18 45.01 3.13
7325 9423 4.333649 CCACAGAAGCAACATAGGTATGTG 59.666 45.833 3.38 0.00 45.55 3.21
7347 9445 2.633488 GAGGCAACATAGTCAACCTCC 58.367 52.381 0.00 0.00 38.18 4.30
7398 9520 3.484407 AGGCATAGAAGAATGTGGATGC 58.516 45.455 0.00 0.00 39.13 3.91
7419 9541 2.875296 AGTGGTAGGCATGCAGAAAAA 58.125 42.857 21.36 0.00 0.00 1.94
7467 9589 3.566742 TGCACGTCTACTTCTGTTGACTA 59.433 43.478 8.52 0.00 43.37 2.59
7509 9631 5.339008 AAACAGAGTCACACAGTCAGTTA 57.661 39.130 0.00 0.00 34.03 2.24
7517 9639 4.283467 AGCTGGTATAAACAGAGTCACACA 59.717 41.667 9.29 0.00 38.20 3.72
7613 9740 0.395036 TGGCAAACATGATACCCCGG 60.395 55.000 0.00 0.00 0.00 5.73
7652 9779 1.374190 CAACTGCTGGAGCTCCACT 59.626 57.895 32.00 11.28 42.01 4.00
7697 9824 8.165239 ACAAAATACAAGACAGCTACATTTGA 57.835 30.769 0.00 0.00 0.00 2.69
7719 9848 2.821378 CTCCATGCCATGTCAAAGACAA 59.179 45.455 3.63 0.00 45.96 3.18
7720 9849 2.040145 TCTCCATGCCATGTCAAAGACA 59.960 45.455 3.63 1.95 46.90 3.41
7754 9883 0.380733 TACATCCTACGCTGCGACAG 59.619 55.000 30.47 22.57 34.12 3.51
7807 9948 6.653273 TGCTTCTAATCTTCTGATGAAACG 57.347 37.500 0.00 0.00 32.44 3.60
7854 9995 1.003355 CAGGCATCGGACCACTTGT 60.003 57.895 0.00 0.00 0.00 3.16
7855 9996 0.321564 TTCAGGCATCGGACCACTTG 60.322 55.000 0.00 0.00 0.00 3.16
7869 10012 6.469782 AATATAACTTGGTGCCATTTCAGG 57.530 37.500 0.00 0.00 0.00 3.86
7909 10052 6.359804 ACCACAGCATCACATAATAATGTCT 58.640 36.000 0.00 0.00 44.70 3.41
7910 10053 6.624352 ACCACAGCATCACATAATAATGTC 57.376 37.500 0.00 0.00 44.70 3.06
7911 10054 7.255242 GCTAACCACAGCATCACATAATAATGT 60.255 37.037 0.00 0.00 42.98 2.71
7917 10060 3.949132 TGCTAACCACAGCATCACATAA 58.051 40.909 0.00 0.00 46.41 1.90
7927 10072 2.582052 TCCAAAACCTGCTAACCACAG 58.418 47.619 0.00 0.00 34.82 3.66
7936 10081 2.100584 TGACAACACATCCAAAACCTGC 59.899 45.455 0.00 0.00 0.00 4.85
7950 10095 4.025040 AGAGGATTGCTTGATGACAACA 57.975 40.909 0.00 0.00 32.27 3.33
7967 10112 1.429148 GCCACGGCGATGTAAAGAGG 61.429 60.000 16.62 1.95 0.00 3.69
7978 10123 1.062365 CATAACACATGCCACGGCG 59.938 57.895 4.80 4.80 45.51 6.46
7979 10124 1.029408 TCCATAACACATGCCACGGC 61.029 55.000 0.00 0.00 42.35 5.68
7982 10127 2.991250 AGACTCCATAACACATGCCAC 58.009 47.619 0.00 0.00 0.00 5.01
7983 10128 3.774766 ACTAGACTCCATAACACATGCCA 59.225 43.478 0.00 0.00 0.00 4.92
7987 10132 7.780745 AGTAGCTAACTAGACTCCATAACACAT 59.219 37.037 0.00 0.00 36.36 3.21
8007 10152 4.410228 TCAGGGCATAATCTTTCAGTAGCT 59.590 41.667 0.00 0.00 0.00 3.32
8009 10154 6.481644 GTCTTCAGGGCATAATCTTTCAGTAG 59.518 42.308 0.00 0.00 0.00 2.57
8021 10166 3.616956 CTGAAGTGTCTTCAGGGCATA 57.383 47.619 23.65 0.00 41.54 3.14
8028 10173 3.309296 AGAACTCCCTGAAGTGTCTTCA 58.691 45.455 10.97 10.97 0.00 3.02
8029 10174 4.344359 AAGAACTCCCTGAAGTGTCTTC 57.656 45.455 2.95 2.95 28.96 2.87
8030 10175 4.779993 AAAGAACTCCCTGAAGTGTCTT 57.220 40.909 0.00 0.00 32.72 3.01
8053 10198 9.697250 CGAATAACTCGTTTCTAAATGCATAAA 57.303 29.630 0.00 0.00 42.89 1.40
8070 10215 7.698130 AGCAATGCAGTAATTTTCGAATAACTC 59.302 33.333 8.35 0.00 0.00 3.01
8071 10216 7.485913 CAGCAATGCAGTAATTTTCGAATAACT 59.514 33.333 8.35 0.00 0.00 2.24
8072 10217 7.484641 TCAGCAATGCAGTAATTTTCGAATAAC 59.515 33.333 8.35 0.00 0.00 1.89
8073 10218 7.534282 TCAGCAATGCAGTAATTTTCGAATAA 58.466 30.769 8.35 0.00 0.00 1.40
8074 10219 7.082700 TCAGCAATGCAGTAATTTTCGAATA 57.917 32.000 8.35 0.00 0.00 1.75
8075 10220 5.953183 TCAGCAATGCAGTAATTTTCGAAT 58.047 33.333 8.35 0.00 0.00 3.34
8076 10221 5.369685 TCAGCAATGCAGTAATTTTCGAA 57.630 34.783 8.35 0.00 0.00 3.71
8077 10222 5.369685 TTCAGCAATGCAGTAATTTTCGA 57.630 34.783 8.35 0.00 0.00 3.71
8078 10223 5.801444 TCATTCAGCAATGCAGTAATTTTCG 59.199 36.000 8.35 0.00 39.56 3.46
8079 10224 7.585286 TTCATTCAGCAATGCAGTAATTTTC 57.415 32.000 8.35 0.00 39.56 2.29
8080 10225 7.604927 ACATTCATTCAGCAATGCAGTAATTTT 59.395 29.630 8.35 0.00 39.56 1.82
8081 10226 7.064134 CACATTCATTCAGCAATGCAGTAATTT 59.936 33.333 8.35 0.00 39.56 1.82
8082 10227 6.533723 CACATTCATTCAGCAATGCAGTAATT 59.466 34.615 8.35 0.00 39.56 1.40
8083 10228 6.040247 CACATTCATTCAGCAATGCAGTAAT 58.960 36.000 8.35 0.82 39.56 1.89
8084 10229 5.183522 TCACATTCATTCAGCAATGCAGTAA 59.816 36.000 8.35 0.00 39.56 2.24
8085 10230 4.701171 TCACATTCATTCAGCAATGCAGTA 59.299 37.500 8.35 0.00 39.56 2.74
8086 10231 3.508402 TCACATTCATTCAGCAATGCAGT 59.492 39.130 8.35 0.00 39.56 4.40
8087 10232 4.104696 TCACATTCATTCAGCAATGCAG 57.895 40.909 8.35 0.00 39.56 4.41
8088 10233 4.729227 ATCACATTCATTCAGCAATGCA 57.271 36.364 8.35 0.00 39.56 3.96
8089 10234 8.241367 TGATATATCACATTCATTCAGCAATGC 58.759 33.333 11.49 0.00 39.56 3.56
8090 10235 9.774742 CTGATATATCACATTCATTCAGCAATG 57.225 33.333 11.49 0.00 35.80 2.82
8091 10236 9.516546 ACTGATATATCACATTCATTCAGCAAT 57.483 29.630 11.49 0.00 34.19 3.56
8092 10237 8.913487 ACTGATATATCACATTCATTCAGCAA 57.087 30.769 11.49 0.00 34.19 3.91
8100 10245 7.093771 ACGCTATGGACTGATATATCACATTCA 60.094 37.037 17.62 12.03 32.50 2.57
8104 10249 6.590234 AACGCTATGGACTGATATATCACA 57.410 37.500 11.49 8.89 32.50 3.58
8140 10285 9.950496 ACTTCAATAACTAGACTCATTCATGTT 57.050 29.630 0.00 0.00 0.00 2.71
8150 10295 8.347035 GCGATCTCTTACTTCAATAACTAGACT 58.653 37.037 0.00 0.00 0.00 3.24
8151 10296 7.592164 GGCGATCTCTTACTTCAATAACTAGAC 59.408 40.741 0.00 0.00 0.00 2.59
8153 10298 7.426410 TGGCGATCTCTTACTTCAATAACTAG 58.574 38.462 0.00 0.00 0.00 2.57
8155 10300 6.222038 TGGCGATCTCTTACTTCAATAACT 57.778 37.500 0.00 0.00 0.00 2.24
8157 10302 9.778741 AAATATGGCGATCTCTTACTTCAATAA 57.221 29.630 0.00 0.00 0.00 1.40
8158 10303 9.778741 AAAATATGGCGATCTCTTACTTCAATA 57.221 29.630 0.00 0.00 0.00 1.90
8186 10340 4.325028 AACAACATCTGCTGCATTTTCA 57.675 36.364 1.31 0.00 0.00 2.69
8187 10341 6.197842 GCTATAACAACATCTGCTGCATTTTC 59.802 38.462 1.31 0.00 0.00 2.29
8188 10342 6.038356 GCTATAACAACATCTGCTGCATTTT 58.962 36.000 1.31 0.00 0.00 1.82
8189 10343 5.125900 TGCTATAACAACATCTGCTGCATTT 59.874 36.000 1.31 0.00 0.00 2.32
8190 10344 4.641541 TGCTATAACAACATCTGCTGCATT 59.358 37.500 1.31 0.00 0.00 3.56
8192 10346 3.608796 TGCTATAACAACATCTGCTGCA 58.391 40.909 0.88 0.88 0.00 4.41
8193 10347 3.873361 TCTGCTATAACAACATCTGCTGC 59.127 43.478 0.00 0.00 0.00 5.25
8194 10348 6.615264 ATTCTGCTATAACAACATCTGCTG 57.385 37.500 0.00 0.00 0.00 4.41
8195 10349 6.600822 ACAATTCTGCTATAACAACATCTGCT 59.399 34.615 0.00 0.00 0.00 4.24
8196 10350 6.789262 ACAATTCTGCTATAACAACATCTGC 58.211 36.000 0.00 0.00 0.00 4.26
8197 10351 8.453320 TCAACAATTCTGCTATAACAACATCTG 58.547 33.333 0.00 0.00 0.00 2.90
8198 10352 8.565896 TCAACAATTCTGCTATAACAACATCT 57.434 30.769 0.00 0.00 0.00 2.90
8199 10353 9.793252 ATTCAACAATTCTGCTATAACAACATC 57.207 29.630 0.00 0.00 0.00 3.06
8210 10377 5.183904 GGACCAGTAATTCAACAATTCTGCT 59.816 40.000 0.00 0.00 33.95 4.24
8237 10404 1.838913 ACATTTCAAACTGCACACGC 58.161 45.000 0.00 0.00 39.24 5.34
8238 10405 5.940603 TTTAACATTTCAAACTGCACACG 57.059 34.783 0.00 0.00 0.00 4.49
8274 10593 7.585286 TTGATCATGCATTTCTTTAACTTGC 57.415 32.000 0.00 0.00 0.00 4.01
8276 10595 9.199982 CAGTTTGATCATGCATTTCTTTAACTT 57.800 29.630 0.00 0.00 0.00 2.66
8281 10600 6.643770 GTCACAGTTTGATCATGCATTTCTTT 59.356 34.615 0.00 0.00 36.32 2.52
8287 10606 3.693807 AGGTCACAGTTTGATCATGCAT 58.306 40.909 0.00 0.00 37.89 3.96
8290 10609 4.516321 TGACAAGGTCACAGTTTGATCATG 59.484 41.667 0.00 0.00 39.53 3.07
8291 10610 4.717877 TGACAAGGTCACAGTTTGATCAT 58.282 39.130 0.00 0.00 37.89 2.45
8352 10671 1.302832 GGGCTTGTGAGAGTGTGGG 60.303 63.158 0.00 0.00 0.00 4.61
8356 10675 5.712152 AAATTAAAGGGCTTGTGAGAGTG 57.288 39.130 0.00 0.00 0.00 3.51
8363 10682 6.213397 AGGCATTCTTAAATTAAAGGGCTTGT 59.787 34.615 0.00 0.00 0.00 3.16
8392 10711 4.998671 TCAGCTTGGAATGTTTGAAACA 57.001 36.364 13.66 13.66 46.94 2.83
8393 10712 5.232838 CAGTTCAGCTTGGAATGTTTGAAAC 59.767 40.000 0.14 0.14 0.00 2.78
8394 10713 5.350633 CAGTTCAGCTTGGAATGTTTGAAA 58.649 37.500 0.00 0.00 0.00 2.69
8432 10751 1.494824 AACCGCTTTAGTGTCGTCAC 58.505 50.000 4.52 4.52 44.15 3.67
8433 10752 2.228138 AAACCGCTTTAGTGTCGTCA 57.772 45.000 0.00 0.00 0.00 4.35
8435 10754 3.981211 TCTTAAACCGCTTTAGTGTCGT 58.019 40.909 0.00 0.00 0.00 4.34
8436 10755 4.977741 TTCTTAAACCGCTTTAGTGTCG 57.022 40.909 0.00 0.00 0.00 4.35
8437 10756 6.051646 TGTTTCTTAAACCGCTTTAGTGTC 57.948 37.500 0.41 0.00 40.67 3.67
8438 10757 6.127952 TGTTGTTTCTTAAACCGCTTTAGTGT 60.128 34.615 0.41 0.00 40.67 3.55
8439 10758 6.259638 TGTTGTTTCTTAAACCGCTTTAGTG 58.740 36.000 0.41 0.00 40.67 2.74
8440 10759 6.439675 TGTTGTTTCTTAAACCGCTTTAGT 57.560 33.333 0.41 0.00 40.67 2.24
8441 10760 5.398416 GCTGTTGTTTCTTAAACCGCTTTAG 59.602 40.000 0.41 0.00 40.67 1.85
8448 10767 6.713792 TTGTTTGCTGTTGTTTCTTAAACC 57.286 33.333 0.00 0.00 40.67 3.27
8477 10796 6.992715 GGCTATGTACAAAGTTCCTGACATAT 59.007 38.462 0.00 0.00 31.36 1.78
8482 10801 4.901197 TGGCTATGTACAAAGTTCCTGA 57.099 40.909 0.00 0.00 0.00 3.86
8489 10808 6.801539 TGAGAAGTTTGGCTATGTACAAAG 57.198 37.500 0.00 0.00 37.27 2.77
8491 10810 7.446931 TCATTTGAGAAGTTTGGCTATGTACAA 59.553 33.333 0.00 0.00 0.00 2.41
8492 10811 6.939730 TCATTTGAGAAGTTTGGCTATGTACA 59.060 34.615 0.00 0.00 0.00 2.90
8493 10812 7.377766 TCATTTGAGAAGTTTGGCTATGTAC 57.622 36.000 0.00 0.00 0.00 2.90
8507 10826 2.501316 TCTGGAGGCGATCATTTGAGAA 59.499 45.455 0.00 0.00 0.00 2.87
8508 10827 2.110578 TCTGGAGGCGATCATTTGAGA 58.889 47.619 0.00 0.00 0.00 3.27
8516 10835 2.795175 TCGTAATTCTGGAGGCGATC 57.205 50.000 0.00 0.00 0.00 3.69
8533 10852 7.168302 CAGAAACTAGATTATGTAGCCAGTTCG 59.832 40.741 0.00 0.00 0.00 3.95
8538 10857 6.320418 TCGTCAGAAACTAGATTATGTAGCCA 59.680 38.462 7.18 0.00 0.00 4.75
8562 10881 4.543692 GCAGCATGATGGTATTGAACATC 58.456 43.478 13.73 0.00 42.86 3.06
8567 10886 2.732844 TGGCAGCATGATGGTATTGA 57.267 45.000 13.73 0.00 39.69 2.57
8572 10891 3.154710 CAGATATTGGCAGCATGATGGT 58.845 45.455 13.73 0.00 39.69 3.55
8600 10922 6.048509 TGTACTGTGTCATGGCAATATGTAG 58.951 40.000 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.