Multiple sequence alignment - TraesCS2D01G158800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G158800 chr2D 100.000 3014 0 0 1 3014 102299455 102296442 0.000000e+00 5566
1 TraesCS2D01G158800 chr2D 87.500 264 22 6 2673 2933 102288168 102287913 8.170000e-76 294
2 TraesCS2D01G158800 chr2D 91.667 120 6 2 2405 2522 102289425 102289308 2.400000e-36 163
3 TraesCS2D01G158800 chr2A 85.842 1561 115 44 1414 2933 101401314 101399819 0.000000e+00 1561
4 TraesCS2D01G158800 chr2A 92.066 668 46 5 726 1390 101402038 101401375 0.000000e+00 933
5 TraesCS2D01G158800 chr2A 87.994 658 51 18 3 634 101402773 101402118 0.000000e+00 752
6 TraesCS2D01G158800 chr2B 92.631 1072 60 8 933 1998 153674881 153673823 0.000000e+00 1524
7 TraesCS2D01G158800 chr2B 93.575 358 20 3 278 634 153675447 153675092 5.720000e-147 531
8 TraesCS2D01G158800 chr2B 86.199 442 27 14 2056 2480 153673624 153673200 5.930000e-122 448
9 TraesCS2D01G158800 chr2B 84.746 295 21 11 1 286 153675749 153675470 1.060000e-69 274
10 TraesCS2D01G158800 chr2B 85.874 269 18 10 2672 2937 153672710 153672459 4.950000e-68 268
11 TraesCS2D01G158800 chr5D 100.000 79 0 0 2936 3014 255469893 255469815 2.420000e-31 147
12 TraesCS2D01G158800 chr5D 98.780 82 1 0 2933 3014 522063214 522063295 2.420000e-31 147
13 TraesCS2D01G158800 chr5D 95.556 90 4 0 2925 3014 416842592 416842503 8.710000e-31 145
14 TraesCS2D01G158800 chr1D 97.647 85 2 0 2930 3014 76951564 76951648 2.420000e-31 147
15 TraesCS2D01G158800 chr7B 95.604 91 3 1 2924 3014 238533047 238533136 8.710000e-31 145
16 TraesCS2D01G158800 chr3D 95.506 89 4 0 2926 3014 67023464 67023552 3.130000e-30 143
17 TraesCS2D01G158800 chr7D 95.506 89 3 1 2926 3014 588680169 588680256 1.130000e-29 141
18 TraesCS2D01G158800 chr6B 94.624 93 2 2 2922 3014 68967068 68966979 1.130000e-29 141
19 TraesCS2D01G158800 chr4D 98.734 79 1 0 2936 3014 14974434 14974356 1.130000e-29 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G158800 chr2D 102296442 102299455 3013 True 5566.0 5566 100.0000 1 3014 1 chr2D.!!$R1 3013
1 TraesCS2D01G158800 chr2D 102287913 102289425 1512 True 228.5 294 89.5835 2405 2933 2 chr2D.!!$R2 528
2 TraesCS2D01G158800 chr2A 101399819 101402773 2954 True 1082.0 1561 88.6340 3 2933 3 chr2A.!!$R1 2930
3 TraesCS2D01G158800 chr2B 153672459 153675749 3290 True 609.0 1524 88.6050 1 2937 5 chr2B.!!$R1 2936

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
197 207 1.008538 GCAAACCAAGTCACGCCTG 60.009 57.895 0.0 0.0 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2147 2458 0.671251 GACCCTCTCGTAGCCATCAG 59.329 60.0 0.0 0.0 0.0 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 1.886886 TCCCAACGCTTTCTGTTACC 58.113 50.000 0.00 0.00 0.00 2.85
47 48 1.534729 GCTTTCTGTTACCCCTGGTG 58.465 55.000 0.00 0.00 36.19 4.17
95 105 2.746904 TGTTCCAAAGTACGATGGCATG 59.253 45.455 3.81 0.00 36.62 4.06
100 110 3.190327 CCAAAGTACGATGGCATGAACAA 59.810 43.478 3.81 0.00 0.00 2.83
105 115 4.630069 AGTACGATGGCATGAACAAACTAC 59.370 41.667 3.81 0.00 0.00 2.73
107 117 3.818210 ACGATGGCATGAACAAACTACAA 59.182 39.130 3.81 0.00 0.00 2.41
154 164 6.447162 GCACAGTAGAACTAAAATGCCTTTT 58.553 36.000 5.05 5.05 38.17 2.27
197 207 1.008538 GCAAACCAAGTCACGCCTG 60.009 57.895 0.00 0.00 0.00 4.85
214 224 3.640029 CGCCTGGGGAACTCTATACTAAA 59.360 47.826 4.46 0.00 0.00 1.85
273 283 3.951680 CTGGGACCAGTTTTGTTTGTAGT 59.048 43.478 10.22 0.00 39.10 2.73
431 498 1.479730 TGTGTGGCTTTGCATGTGAAA 59.520 42.857 0.00 0.00 0.00 2.69
439 506 1.538047 TTGCATGTGAAAGGGAGAGC 58.462 50.000 0.00 0.00 0.00 4.09
469 536 8.977412 TGTGAACTAGGGAAAAAGAAAGAAAAT 58.023 29.630 0.00 0.00 0.00 1.82
485 552 7.395489 AGAAAGAAAATGGTCATTCTGCATAGT 59.605 33.333 0.00 0.00 34.99 2.12
563 631 1.466167 GCTTGCACAGTGATCGACAAT 59.534 47.619 4.15 0.00 0.00 2.71
564 633 2.095567 GCTTGCACAGTGATCGACAATT 60.096 45.455 4.15 0.00 0.00 2.32
565 634 3.485633 CTTGCACAGTGATCGACAATTG 58.514 45.455 4.15 3.24 0.00 2.32
569 638 4.202000 TGCACAGTGATCGACAATTGTTTT 60.202 37.500 13.36 0.39 0.00 2.43
619 690 1.143684 AGGAAGCTGAACAGGAAAGCA 59.856 47.619 3.99 0.00 39.47 3.91
620 691 1.538950 GGAAGCTGAACAGGAAAGCAG 59.461 52.381 3.99 0.00 39.47 4.24
621 692 2.225467 GAAGCTGAACAGGAAAGCAGT 58.775 47.619 3.99 0.00 39.47 4.40
622 693 2.355010 AGCTGAACAGGAAAGCAGTT 57.645 45.000 3.99 0.00 39.47 3.16
623 694 2.659428 AGCTGAACAGGAAAGCAGTTT 58.341 42.857 3.99 0.00 39.47 2.66
624 695 2.620585 AGCTGAACAGGAAAGCAGTTTC 59.379 45.455 3.99 0.00 41.35 2.78
625 696 2.620585 GCTGAACAGGAAAGCAGTTTCT 59.379 45.455 3.99 0.00 41.72 2.52
626 697 3.067320 GCTGAACAGGAAAGCAGTTTCTT 59.933 43.478 3.99 0.00 41.72 2.52
627 698 4.275936 GCTGAACAGGAAAGCAGTTTCTTA 59.724 41.667 3.99 0.00 41.72 2.10
628 699 5.048434 GCTGAACAGGAAAGCAGTTTCTTAT 60.048 40.000 3.99 0.00 41.72 1.73
629 700 6.560253 TGAACAGGAAAGCAGTTTCTTATC 57.440 37.500 0.00 0.00 41.72 1.75
630 701 6.061441 TGAACAGGAAAGCAGTTTCTTATCA 58.939 36.000 0.00 0.00 41.72 2.15
631 702 6.545666 TGAACAGGAAAGCAGTTTCTTATCAA 59.454 34.615 0.00 0.00 41.72 2.57
632 703 6.566197 ACAGGAAAGCAGTTTCTTATCAAG 57.434 37.500 0.00 0.00 41.72 3.02
633 704 6.064717 ACAGGAAAGCAGTTTCTTATCAAGT 58.935 36.000 0.00 0.00 41.72 3.16
634 705 6.547510 ACAGGAAAGCAGTTTCTTATCAAGTT 59.452 34.615 0.00 0.00 41.72 2.66
635 706 7.068716 ACAGGAAAGCAGTTTCTTATCAAGTTT 59.931 33.333 0.00 0.00 41.72 2.66
636 707 7.922811 CAGGAAAGCAGTTTCTTATCAAGTTTT 59.077 33.333 0.00 0.00 41.72 2.43
637 708 8.478066 AGGAAAGCAGTTTCTTATCAAGTTTTT 58.522 29.630 0.00 0.00 41.72 1.94
665 736 4.764050 TTGCGGGGAGTTTCTTATCATA 57.236 40.909 0.00 0.00 0.00 2.15
756 848 6.476243 TTTCGTCCTTTATTGTGACTTAGC 57.524 37.500 0.00 0.00 0.00 3.09
757 849 5.142061 TCGTCCTTTATTGTGACTTAGCA 57.858 39.130 0.00 0.00 0.00 3.49
760 852 6.147164 TCGTCCTTTATTGTGACTTAGCAAAG 59.853 38.462 0.00 0.00 38.77 2.77
763 856 6.264292 TCCTTTATTGTGACTTAGCAAAGCAA 59.736 34.615 0.00 0.00 36.05 3.91
781 878 8.895845 GCAAAGCAATTTCTTATCATGTATACG 58.104 33.333 0.00 0.00 0.00 3.06
801 928 2.744202 CGCAGTTGCAGAACTATTTCCT 59.256 45.455 4.84 0.00 40.68 3.36
822 949 9.624697 TTTCCTTTTATCAATGAATTTCAGTCG 57.375 29.630 5.21 0.00 0.00 4.18
871 998 7.918076 TCCATCCTTTATTGTGACTTAACTCT 58.082 34.615 0.00 0.00 0.00 3.24
876 1003 8.349983 TCCTTTATTGTGACTTAACTCTTTTGC 58.650 33.333 0.00 0.00 0.00 3.68
886 1013 8.227791 TGACTTAACTCTTTTGCGTTGATTATC 58.772 33.333 0.00 0.00 0.00 1.75
898 1025 6.220930 TGCGTTGATTATCTACCCATCTTAC 58.779 40.000 1.60 0.00 0.00 2.34
903 1030 9.877178 GTTGATTATCTACCCATCTTACTATGG 57.123 37.037 0.00 0.00 45.20 2.74
927 1054 7.287005 TGGAGTTAACTGAGTATATACCTGTGG 59.713 40.741 14.14 0.00 0.00 4.17
965 1092 7.041372 GGTTACTGTAATCTTGTGAAGCTCAAA 60.041 37.037 3.23 0.00 0.00 2.69
989 1116 4.111375 AGGTCGTTGCTTCTGTATAGTG 57.889 45.455 0.00 0.00 0.00 2.74
990 1117 3.510360 AGGTCGTTGCTTCTGTATAGTGT 59.490 43.478 0.00 0.00 0.00 3.55
1146 1273 7.282224 CCAAATTCGAAATCCACAATAGGAGTA 59.718 37.037 0.00 0.00 41.90 2.59
1173 1300 3.075882 TCCAGACCCAGAAATTGGTGATT 59.924 43.478 0.00 0.00 46.25 2.57
1179 1306 3.133362 CCCAGAAATTGGTGATTGATGGG 59.867 47.826 0.00 0.00 46.25 4.00
1290 1417 7.755822 GGAGCTCTACTGGTTTATGATATTACG 59.244 40.741 14.64 0.00 0.00 3.18
1410 1579 3.181455 TGCTTGTCATTGTGTACTCCAGT 60.181 43.478 0.00 0.00 0.00 4.00
1442 1612 0.939419 GCAAAGCACAAAAGGCAAGG 59.061 50.000 0.00 0.00 0.00 3.61
1456 1626 1.581934 GCAAGGGCCAAACTGAAAAC 58.418 50.000 6.18 0.00 0.00 2.43
1457 1627 1.134551 GCAAGGGCCAAACTGAAAACA 60.135 47.619 6.18 0.00 0.00 2.83
1462 1632 2.354510 GGGCCAAACTGAAAACAAAAGC 59.645 45.455 4.39 0.00 0.00 3.51
1494 1664 4.928615 AGAAAAGAGAAGAGAACTGCATCG 59.071 41.667 0.00 0.00 0.00 3.84
1504 1674 4.691216 AGAGAACTGCATCGAAACTAAACC 59.309 41.667 0.00 0.00 0.00 3.27
1528 1698 7.159372 CCTAGTTAGAGCAGGTCAAAACTTAA 58.841 38.462 19.59 7.51 35.98 1.85
1529 1699 7.332182 CCTAGTTAGAGCAGGTCAAAACTTAAG 59.668 40.741 19.59 13.90 35.98 1.85
1530 1700 6.827727 AGTTAGAGCAGGTCAAAACTTAAGA 58.172 36.000 10.09 0.00 32.48 2.10
1531 1701 6.706716 AGTTAGAGCAGGTCAAAACTTAAGAC 59.293 38.462 10.09 0.00 32.48 3.01
1533 1703 5.059833 AGAGCAGGTCAAAACTTAAGACTG 58.940 41.667 10.09 3.36 32.98 3.51
1534 1704 3.565902 AGCAGGTCAAAACTTAAGACTGC 59.434 43.478 10.09 14.75 37.03 4.40
1535 1705 3.315191 GCAGGTCAAAACTTAAGACTGCA 59.685 43.478 10.09 0.00 36.90 4.41
1586 1756 3.547746 TGAGTTGGTTGGTTGTCTTACC 58.452 45.455 0.00 0.00 38.73 2.85
1594 1764 3.404224 TGGTTGTCTTACCGTTGCATA 57.596 42.857 0.00 0.00 41.28 3.14
1617 1787 4.044191 ACCCCTAGCAACTTAGATTGGTTT 59.956 41.667 5.05 0.00 40.62 3.27
1643 1813 6.200854 CACTTTGGTTTGATTTCTTGTTAGCC 59.799 38.462 0.00 0.00 0.00 3.93
2028 2212 3.546417 CGTCGTAGAGCATGTAAGACCTC 60.546 52.174 0.00 0.00 39.51 3.85
2129 2440 7.630242 ACTTGTGTGATGAATATTTAGGTGG 57.370 36.000 0.00 0.00 0.00 4.61
2130 2441 6.095440 ACTTGTGTGATGAATATTTAGGTGGC 59.905 38.462 0.00 0.00 0.00 5.01
2131 2442 4.574421 TGTGTGATGAATATTTAGGTGGCG 59.426 41.667 0.00 0.00 0.00 5.69
2132 2443 4.574828 GTGTGATGAATATTTAGGTGGCGT 59.425 41.667 0.00 0.00 0.00 5.68
2133 2444 5.065988 GTGTGATGAATATTTAGGTGGCGTT 59.934 40.000 0.00 0.00 0.00 4.84
2134 2445 5.295787 TGTGATGAATATTTAGGTGGCGTTC 59.704 40.000 0.00 0.00 0.00 3.95
2135 2446 5.295787 GTGATGAATATTTAGGTGGCGTTCA 59.704 40.000 0.00 0.00 0.00 3.18
2136 2447 5.527214 TGATGAATATTTAGGTGGCGTTCAG 59.473 40.000 0.00 0.00 0.00 3.02
2147 2458 1.671379 GCGTTCAGGTTCCTGGACC 60.671 63.158 20.67 11.99 38.90 4.46
2155 2466 1.566298 GGTTCCTGGACCTGATGGCT 61.566 60.000 0.00 0.00 36.73 4.75
2215 2526 2.078392 GCGGATCCGGTTAGTGAAAAA 58.922 47.619 33.98 0.00 40.19 1.94
2216 2527 2.095372 GCGGATCCGGTTAGTGAAAAAG 59.905 50.000 33.98 2.65 40.19 2.27
2234 2545 0.106708 AGTTGTGCTCGCCTTCTTCA 59.893 50.000 0.00 0.00 0.00 3.02
2235 2546 0.944386 GTTGTGCTCGCCTTCTTCAA 59.056 50.000 0.00 0.00 0.00 2.69
2382 2706 5.929992 TGTAAAGAGGAAAACTATGTCACCG 59.070 40.000 0.00 0.00 0.00 4.94
2456 2783 4.819630 CACACTTTTAACTGTTCCTAGGCA 59.180 41.667 2.96 0.00 0.00 4.75
2523 2858 1.809619 CGGCGAAATTCAGCTCGGA 60.810 57.895 0.00 0.00 35.60 4.55
2524 2859 1.154205 CGGCGAAATTCAGCTCGGAT 61.154 55.000 0.00 0.00 35.60 4.18
2542 2895 3.885358 GGATTTTTACCGATCGGATTGC 58.115 45.455 39.55 19.79 38.96 3.56
2543 2896 3.541711 GATTTTTACCGATCGGATTGCG 58.458 45.455 39.55 13.23 38.96 4.85
2548 2901 4.343581 CGATCGGATTGCGGACAT 57.656 55.556 7.38 0.00 0.00 3.06
2549 2902 1.855338 CGATCGGATTGCGGACATG 59.145 57.895 7.38 0.00 0.00 3.21
2550 2903 1.571460 GATCGGATTGCGGACATGC 59.429 57.895 0.00 0.00 0.00 4.06
2551 2904 2.162921 GATCGGATTGCGGACATGCG 62.163 60.000 0.00 6.65 37.81 4.73
2552 2905 4.596180 CGGATTGCGGACATGCGC 62.596 66.667 11.11 11.11 37.81 6.09
2553 2906 3.507924 GGATTGCGGACATGCGCA 61.508 61.111 14.96 14.96 39.49 6.09
2554 2907 2.277501 GATTGCGGACATGCGCAC 60.278 61.111 20.34 6.30 41.02 5.34
2555 2908 4.164664 ATTGCGGACATGCGCACG 62.165 61.111 20.34 13.82 41.02 5.34
2557 2910 4.726351 TGCGGACATGCGCACGTA 62.726 61.111 14.90 8.84 36.12 3.57
2558 2911 4.204891 GCGGACATGCGCACGTAC 62.205 66.667 14.90 11.78 0.00 3.67
2576 2930 2.119801 ACTAGCACTGAAATGGCAGG 57.880 50.000 0.00 0.00 40.20 4.85
2584 2938 5.188359 AGCACTGAAATGGCAGGAAATAATT 59.812 36.000 0.00 0.00 40.20 1.40
2587 2941 7.624764 GCACTGAAATGGCAGGAAATAATTTTG 60.625 37.037 0.00 0.00 40.20 2.44
2631 3236 2.035321 ACTTGGGTAACAACAATTGCCG 59.965 45.455 5.05 0.00 35.32 5.69
2665 3277 6.150140 GCATCACTGTTGAAGAACTCCTAAAT 59.850 38.462 0.00 0.00 34.61 1.40
2666 3278 7.625185 GCATCACTGTTGAAGAACTCCTAAATC 60.625 40.741 0.00 0.00 34.61 2.17
2667 3279 7.067496 TCACTGTTGAAGAACTCCTAAATCT 57.933 36.000 0.00 0.00 32.79 2.40
2668 3280 6.931281 TCACTGTTGAAGAACTCCTAAATCTG 59.069 38.462 0.00 0.00 32.79 2.90
2670 3282 6.708054 ACTGTTGAAGAACTCCTAAATCTGTG 59.292 38.462 0.00 0.00 32.79 3.66
2733 4353 2.287547 CCGGTGACTTGTGTGATTTTGG 60.288 50.000 0.00 0.00 0.00 3.28
2792 4412 5.064198 GCAGTACCGACACATTATAAAGCAA 59.936 40.000 0.00 0.00 0.00 3.91
2794 4414 4.616181 ACCGACACATTATAAAGCAAGC 57.384 40.909 0.00 0.00 0.00 4.01
2796 4416 4.094887 ACCGACACATTATAAAGCAAGCAG 59.905 41.667 0.00 0.00 0.00 4.24
2798 4418 5.496387 CGACACATTATAAAGCAAGCAGAG 58.504 41.667 0.00 0.00 0.00 3.35
2799 4419 5.291858 CGACACATTATAAAGCAAGCAGAGA 59.708 40.000 0.00 0.00 0.00 3.10
2800 4420 6.183360 CGACACATTATAAAGCAAGCAGAGAA 60.183 38.462 0.00 0.00 0.00 2.87
2801 4421 7.452880 ACACATTATAAAGCAAGCAGAGAAA 57.547 32.000 0.00 0.00 0.00 2.52
2802 4422 7.885297 ACACATTATAAAGCAAGCAGAGAAAA 58.115 30.769 0.00 0.00 0.00 2.29
2803 4423 8.526147 ACACATTATAAAGCAAGCAGAGAAAAT 58.474 29.630 0.00 0.00 0.00 1.82
2804 4424 9.017669 CACATTATAAAGCAAGCAGAGAAAATC 57.982 33.333 0.00 0.00 0.00 2.17
2862 4493 5.625568 ATCTTCACCAGATGATGATGACA 57.374 39.130 4.92 0.00 45.75 3.58
2863 4494 5.625568 TCTTCACCAGATGATGATGACAT 57.374 39.130 0.00 0.00 36.76 3.06
2904 4535 4.460263 AGTGCAGAACATGAACCTTAACA 58.540 39.130 0.00 0.00 38.38 2.41
2933 4564 0.437295 CCGCTCGGTAAAAAGTGACG 59.563 55.000 0.00 0.00 0.00 4.35
2934 4565 1.411394 CGCTCGGTAAAAAGTGACGA 58.589 50.000 0.00 0.00 0.00 4.20
2935 4566 1.123756 CGCTCGGTAAAAAGTGACGAC 59.876 52.381 0.00 0.00 0.00 4.34
2936 4567 2.129607 GCTCGGTAAAAAGTGACGACA 58.870 47.619 0.00 0.00 0.00 4.35
2937 4568 2.540931 GCTCGGTAAAAAGTGACGACAA 59.459 45.455 0.00 0.00 0.00 3.18
2938 4569 3.001533 GCTCGGTAAAAAGTGACGACAAA 59.998 43.478 0.00 0.00 0.00 2.83
2939 4570 4.319261 GCTCGGTAAAAAGTGACGACAAAT 60.319 41.667 0.00 0.00 0.00 2.32
2940 4571 5.738118 TCGGTAAAAAGTGACGACAAATT 57.262 34.783 0.00 0.00 0.00 1.82
2941 4572 6.121613 TCGGTAAAAAGTGACGACAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
2942 4573 5.966503 TCGGTAAAAAGTGACGACAAATTTG 59.033 36.000 16.67 16.67 0.00 2.32
2943 4574 5.966503 CGGTAAAAAGTGACGACAAATTTGA 59.033 36.000 24.64 0.00 0.00 2.69
2944 4575 6.075780 CGGTAAAAAGTGACGACAAATTTGAC 60.076 38.462 24.64 17.07 0.00 3.18
2945 4576 6.748198 GGTAAAAAGTGACGACAAATTTGACA 59.252 34.615 24.64 14.47 0.00 3.58
2946 4577 7.273815 GGTAAAAAGTGACGACAAATTTGACAA 59.726 33.333 24.64 4.60 0.00 3.18
2947 4578 7.644986 AAAAAGTGACGACAAATTTGACAAA 57.355 28.000 24.64 2.48 0.00 2.83
2948 4579 7.826260 AAAAGTGACGACAAATTTGACAAAT 57.174 28.000 24.64 7.62 0.00 2.32
2949 4580 7.826260 AAAGTGACGACAAATTTGACAAATT 57.174 28.000 24.64 18.41 42.62 1.82
2962 4593 9.840427 AAATTTGACAAATTTGACCTATAGACG 57.160 29.630 29.31 0.00 46.30 4.18
2963 4594 8.786826 ATTTGACAAATTTGACCTATAGACGA 57.213 30.769 24.64 0.00 0.00 4.20
2964 4595 8.610248 TTTGACAAATTTGACCTATAGACGAA 57.390 30.769 24.64 3.11 0.00 3.85
2965 4596 8.610248 TTGACAAATTTGACCTATAGACGAAA 57.390 30.769 24.64 2.44 0.00 3.46
2966 4597 8.786826 TGACAAATTTGACCTATAGACGAAAT 57.213 30.769 24.64 0.00 0.00 2.17
2967 4598 8.879759 TGACAAATTTGACCTATAGACGAAATC 58.120 33.333 24.64 6.30 0.00 2.17
2968 4599 8.786826 ACAAATTTGACCTATAGACGAAATCA 57.213 30.769 24.64 0.00 0.00 2.57
2969 4600 9.226606 ACAAATTTGACCTATAGACGAAATCAA 57.773 29.630 24.64 0.00 0.00 2.57
2973 4604 9.613428 ATTTGACCTATAGACGAAATCAAATCA 57.387 29.630 0.00 0.00 39.78 2.57
2974 4605 8.420374 TTGACCTATAGACGAAATCAAATCAC 57.580 34.615 0.00 0.00 0.00 3.06
2975 4606 7.552459 TGACCTATAGACGAAATCAAATCACA 58.448 34.615 0.00 0.00 0.00 3.58
2976 4607 7.706607 TGACCTATAGACGAAATCAAATCACAG 59.293 37.037 0.00 0.00 0.00 3.66
2977 4608 7.782049 ACCTATAGACGAAATCAAATCACAGA 58.218 34.615 0.00 0.00 0.00 3.41
2978 4609 8.258007 ACCTATAGACGAAATCAAATCACAGAA 58.742 33.333 0.00 0.00 0.00 3.02
2979 4610 9.265901 CCTATAGACGAAATCAAATCACAGAAT 57.734 33.333 0.00 0.00 0.00 2.40
2981 4612 8.722480 ATAGACGAAATCAAATCACAGAATGA 57.278 30.769 0.00 0.00 43.13 2.57
2982 4613 7.439157 AGACGAAATCAAATCACAGAATGAA 57.561 32.000 0.00 0.00 41.93 2.57
2983 4614 7.301054 AGACGAAATCAAATCACAGAATGAAC 58.699 34.615 0.00 0.00 41.93 3.18
2984 4615 7.173907 AGACGAAATCAAATCACAGAATGAACT 59.826 33.333 0.00 0.00 41.93 3.01
2985 4616 8.322906 ACGAAATCAAATCACAGAATGAACTA 57.677 30.769 0.00 0.00 41.93 2.24
2986 4617 8.950210 ACGAAATCAAATCACAGAATGAACTAT 58.050 29.630 0.00 0.00 41.93 2.12
2987 4618 9.430838 CGAAATCAAATCACAGAATGAACTATC 57.569 33.333 0.00 0.00 41.93 2.08
2988 4619 9.727627 GAAATCAAATCACAGAATGAACTATCC 57.272 33.333 0.00 0.00 41.93 2.59
2989 4620 6.908870 TCAAATCACAGAATGAACTATCCG 57.091 37.500 0.00 0.00 41.93 4.18
2990 4621 6.406370 TCAAATCACAGAATGAACTATCCGT 58.594 36.000 0.00 0.00 41.93 4.69
2991 4622 6.313658 TCAAATCACAGAATGAACTATCCGTG 59.686 38.462 0.00 0.00 41.93 4.94
2992 4623 5.598416 ATCACAGAATGAACTATCCGTGA 57.402 39.130 0.00 0.00 41.93 4.35
2993 4624 5.400066 TCACAGAATGAACTATCCGTGAA 57.600 39.130 0.00 0.00 39.69 3.18
2994 4625 5.789521 TCACAGAATGAACTATCCGTGAAA 58.210 37.500 0.00 0.00 39.69 2.69
2995 4626 5.637810 TCACAGAATGAACTATCCGTGAAAC 59.362 40.000 0.00 0.00 39.69 2.78
2996 4627 5.639506 CACAGAATGAACTATCCGTGAAACT 59.360 40.000 0.00 0.00 39.69 2.66
2997 4628 6.811665 CACAGAATGAACTATCCGTGAAACTA 59.188 38.462 0.00 0.00 39.69 2.24
2998 4629 7.492669 CACAGAATGAACTATCCGTGAAACTAT 59.507 37.037 0.00 0.00 39.69 2.12
2999 4630 8.041323 ACAGAATGAACTATCCGTGAAACTATT 58.959 33.333 0.00 0.00 39.69 1.73
3000 4631 8.883731 CAGAATGAACTATCCGTGAAACTATTT 58.116 33.333 0.00 0.00 39.69 1.40
3001 4632 9.099454 AGAATGAACTATCCGTGAAACTATTTC 57.901 33.333 0.00 0.00 40.08 2.17
3002 4633 8.786826 AATGAACTATCCGTGAAACTATTTCA 57.213 30.769 0.00 0.00 46.68 2.69
3009 4640 1.803334 TGAAACTATTTCACGCGGCT 58.197 45.000 12.47 0.00 44.21 5.52
3010 4641 1.463056 TGAAACTATTTCACGCGGCTG 59.537 47.619 12.47 0.00 44.21 4.85
3011 4642 1.730064 GAAACTATTTCACGCGGCTGA 59.270 47.619 12.47 2.44 39.45 4.26
3012 4643 1.076332 AACTATTTCACGCGGCTGAC 58.924 50.000 12.47 0.00 0.00 3.51
3013 4644 0.739813 ACTATTTCACGCGGCTGACC 60.740 55.000 12.47 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 0.400213 TAGTTGCCTTGACACCAGGG 59.600 55.000 0.00 0.00 42.02 4.45
47 48 1.474077 CCTGCCAATAGTTGCCTTGAC 59.526 52.381 0.00 0.00 0.00 3.18
68 78 5.344933 GCCATCGTACTTTGGAACATTTTTC 59.655 40.000 13.49 0.00 39.30 2.29
105 115 8.823818 GCCAGGATTTCATTTCTATTTCATTTG 58.176 33.333 0.00 0.00 0.00 2.32
107 117 7.983484 GTGCCAGGATTTCATTTCTATTTCATT 59.017 33.333 0.00 0.00 0.00 2.57
197 207 6.655425 GCCAATGATTTAGTATAGAGTTCCCC 59.345 42.308 0.00 0.00 0.00 4.81
214 224 1.276989 CCCAAAGCAACAGCCAATGAT 59.723 47.619 0.00 0.00 0.00 2.45
273 283 7.279981 ACATGCGCTTTACAGAACATAGATTAA 59.720 33.333 9.73 0.00 0.00 1.40
431 498 1.270907 AGTTCACATTCGCTCTCCCT 58.729 50.000 0.00 0.00 0.00 4.20
439 506 6.554334 TTCTTTTTCCCTAGTTCACATTCG 57.446 37.500 0.00 0.00 0.00 3.34
469 536 5.499313 TCATTTCACTATGCAGAATGACCA 58.501 37.500 0.00 0.00 39.69 4.02
485 552 9.399797 AGAGTTTATATCTTGCACATCATTTCA 57.600 29.630 0.00 0.00 0.00 2.69
524 592 5.561725 GCAAGCCTAAGTATCATTGCTAAGC 60.562 44.000 0.00 0.00 39.82 3.09
641 712 4.145807 TGATAAGAAACTCCCCGCAAAAA 58.854 39.130 0.00 0.00 0.00 1.94
642 713 3.757270 TGATAAGAAACTCCCCGCAAAA 58.243 40.909 0.00 0.00 0.00 2.44
643 714 3.426787 TGATAAGAAACTCCCCGCAAA 57.573 42.857 0.00 0.00 0.00 3.68
644 715 3.644966 ATGATAAGAAACTCCCCGCAA 57.355 42.857 0.00 0.00 0.00 4.85
645 716 4.974645 ATATGATAAGAAACTCCCCGCA 57.025 40.909 0.00 0.00 0.00 5.69
646 717 9.262358 GATTATATATGATAAGAAACTCCCCGC 57.738 37.037 0.00 0.00 0.00 6.13
755 847 8.895845 CGTATACATGATAAGAAATTGCTTTGC 58.104 33.333 3.39 0.00 0.00 3.68
756 848 8.895845 GCGTATACATGATAAGAAATTGCTTTG 58.104 33.333 3.39 0.00 0.00 2.77
757 849 8.620416 TGCGTATACATGATAAGAAATTGCTTT 58.380 29.630 3.39 0.00 0.00 3.51
760 852 7.576236 ACTGCGTATACATGATAAGAAATTGC 58.424 34.615 0.00 0.00 0.00 3.56
763 856 7.226523 TGCAACTGCGTATACATGATAAGAAAT 59.773 33.333 0.00 0.00 45.83 2.17
781 878 4.773323 AAGGAAATAGTTCTGCAACTGC 57.227 40.909 2.56 0.00 43.17 4.40
785 882 9.859427 CATTGATAAAAGGAAATAGTTCTGCAA 57.141 29.630 2.56 0.00 33.92 4.08
857 984 5.122554 TCAACGCAAAAGAGTTAAGTCACAA 59.877 36.000 12.77 0.00 0.00 3.33
871 998 6.119536 AGATGGGTAGATAATCAACGCAAAA 58.880 36.000 0.00 0.00 39.17 2.44
876 1003 9.574458 CATAGTAAGATGGGTAGATAATCAACG 57.426 37.037 0.00 0.00 0.00 4.10
886 1013 8.361139 CAGTTAACTCCATAGTAAGATGGGTAG 58.639 40.741 4.77 0.00 45.67 3.18
903 1030 8.461249 TCCACAGGTATATACTCAGTTAACTC 57.539 38.462 4.77 0.00 0.00 3.01
904 1031 8.834004 TTCCACAGGTATATACTCAGTTAACT 57.166 34.615 12.54 1.12 0.00 2.24
905 1032 9.310716 GTTTCCACAGGTATATACTCAGTTAAC 57.689 37.037 12.54 0.00 0.00 2.01
910 1037 7.707035 GTCAAGTTTCCACAGGTATATACTCAG 59.293 40.741 12.54 5.70 0.00 3.35
912 1039 7.553334 TGTCAAGTTTCCACAGGTATATACTC 58.447 38.462 12.54 3.44 0.00 2.59
922 1049 2.348411 ACCCTGTCAAGTTTCCACAG 57.652 50.000 0.00 0.00 37.81 3.66
965 1092 5.408604 CACTATACAGAAGCAACGACCTTTT 59.591 40.000 0.00 0.00 0.00 2.27
974 1101 4.819088 TGCAACAACACTATACAGAAGCAA 59.181 37.500 0.00 0.00 0.00 3.91
982 1109 4.396166 AGCCATTCTGCAACAACACTATAC 59.604 41.667 0.00 0.00 0.00 1.47
985 1112 2.862541 AGCCATTCTGCAACAACACTA 58.137 42.857 0.00 0.00 0.00 2.74
989 1116 3.056607 ACCATAAGCCATTCTGCAACAAC 60.057 43.478 0.00 0.00 0.00 3.32
990 1117 3.056678 CACCATAAGCCATTCTGCAACAA 60.057 43.478 0.00 0.00 0.00 2.83
1146 1273 4.347607 CCAATTTCTGGGTCTGGAATTCT 58.652 43.478 5.23 0.00 42.17 2.40
1173 1300 5.579047 TGAGCTTTAATTTCCTTCCCATCA 58.421 37.500 0.00 0.00 0.00 3.07
1179 1306 7.721399 TCCCATATCTGAGCTTTAATTTCCTTC 59.279 37.037 0.00 0.00 0.00 3.46
1272 1399 5.227908 CGCCTCGTAATATCATAAACCAGT 58.772 41.667 0.00 0.00 0.00 4.00
1290 1417 0.955428 TGTCAAATGTCTGGCGCCTC 60.955 55.000 29.70 17.99 0.00 4.70
1442 1612 3.006247 TGCTTTTGTTTTCAGTTTGGCC 58.994 40.909 0.00 0.00 0.00 5.36
1456 1626 9.750882 CTTCTCTTTTCTTTTCTTTTGCTTTTG 57.249 29.630 0.00 0.00 0.00 2.44
1457 1627 9.710900 TCTTCTCTTTTCTTTTCTTTTGCTTTT 57.289 25.926 0.00 0.00 0.00 2.27
1488 1658 6.927416 TCTAACTAGGTTTAGTTTCGATGCA 58.073 36.000 5.39 0.00 45.57 3.96
1494 1664 6.699366 ACCTGCTCTAACTAGGTTTAGTTTC 58.301 40.000 5.39 0.00 45.57 2.78
1504 1674 8.088981 TCTTAAGTTTTGACCTGCTCTAACTAG 58.911 37.037 1.63 0.00 29.56 2.57
1586 1756 3.469564 TTGCTAGGGGTATGCAACG 57.530 52.632 0.00 0.00 41.06 4.10
1594 1764 3.190439 ACCAATCTAAGTTGCTAGGGGT 58.810 45.455 0.00 0.00 0.00 4.95
1617 1787 6.978080 GCTAACAAGAAATCAAACCAAAGTGA 59.022 34.615 0.00 0.00 0.00 3.41
1728 1898 2.175621 CCGCGCATGCTTGAGATCA 61.176 57.895 17.13 0.00 39.65 2.92
1731 1901 4.081185 TCCCGCGCATGCTTGAGA 62.081 61.111 17.13 4.68 39.65 3.27
1788 1958 2.291217 GGTTTCCATGAAGAAGAGGCCT 60.291 50.000 3.86 3.86 0.00 5.19
1972 2142 1.368019 CGCTGCTGTTTGTGTCACG 60.368 57.895 0.00 0.00 0.00 4.35
1974 2144 2.186160 CCCGCTGCTGTTTGTGTCA 61.186 57.895 0.00 0.00 0.00 3.58
2028 2212 2.907458 ACCAGGAGAAAAATGGAGGG 57.093 50.000 0.00 0.00 37.54 4.30
2089 2400 2.226437 ACAAGTTTAGCAATGTCAGGCG 59.774 45.455 0.00 0.00 34.54 5.52
2127 2438 2.144078 TCCAGGAACCTGAACGCCA 61.144 57.895 20.79 0.00 46.30 5.69
2128 2439 1.671379 GTCCAGGAACCTGAACGCC 60.671 63.158 20.79 1.94 46.30 5.68
2129 2440 1.671379 GGTCCAGGAACCTGAACGC 60.671 63.158 20.79 3.18 46.30 4.84
2130 2441 4.695560 GGTCCAGGAACCTGAACG 57.304 61.111 20.79 5.93 46.30 3.95
2136 2447 1.077429 GCCATCAGGTCCAGGAACC 60.077 63.158 0.00 0.02 39.80 3.62
2147 2458 0.671251 GACCCTCTCGTAGCCATCAG 59.329 60.000 0.00 0.00 0.00 2.90
2153 2464 0.971447 AACAGGGACCCTCTCGTAGC 60.971 60.000 11.23 0.00 0.00 3.58
2155 2466 1.255667 GCAACAGGGACCCTCTCGTA 61.256 60.000 11.23 0.00 0.00 3.43
2215 2526 0.106708 TGAAGAAGGCGAGCACAACT 59.893 50.000 0.00 0.00 0.00 3.16
2216 2527 0.944386 TTGAAGAAGGCGAGCACAAC 59.056 50.000 0.00 0.00 0.00 3.32
2234 2545 5.053811 CGGCCAACTTTTACCTTTTGATTT 58.946 37.500 2.24 0.00 0.00 2.17
2235 2546 4.342665 TCGGCCAACTTTTACCTTTTGATT 59.657 37.500 2.24 0.00 0.00 2.57
2382 2706 1.198637 GAATTGACACAGCAGCCAGTC 59.801 52.381 3.21 3.21 0.00 3.51
2456 2783 2.196997 TATGAGGGCAAGCAGGCGTT 62.197 55.000 0.00 0.00 45.36 4.84
2506 2838 1.017387 AATCCGAGCTGAATTTCGCC 58.983 50.000 0.00 0.00 35.58 5.54
2523 2858 2.289547 CCGCAATCCGATCGGTAAAAAT 59.710 45.455 32.15 16.26 40.02 1.82
2524 2859 1.666700 CCGCAATCCGATCGGTAAAAA 59.333 47.619 32.15 14.54 40.02 1.94
2542 2895 1.200474 CTAGTACGTGCGCATGTCCG 61.200 60.000 36.69 25.81 0.00 4.79
2543 2896 1.480219 GCTAGTACGTGCGCATGTCC 61.480 60.000 36.69 26.79 0.00 4.02
2545 2898 1.076533 GTGCTAGTACGTGCGCATGT 61.077 55.000 35.14 35.14 39.25 3.21
2546 2899 0.802222 AGTGCTAGTACGTGCGCATG 60.802 55.000 27.53 27.53 41.57 4.06
2547 2900 0.802222 CAGTGCTAGTACGTGCGCAT 60.802 55.000 15.91 0.00 41.57 4.73
2548 2901 1.443702 CAGTGCTAGTACGTGCGCA 60.444 57.895 21.94 5.66 41.57 6.09
2549 2902 0.731514 TTCAGTGCTAGTACGTGCGC 60.732 55.000 15.47 15.47 39.68 6.09
2550 2903 1.693467 TTTCAGTGCTAGTACGTGCG 58.307 50.000 5.25 0.00 0.00 5.34
2551 2904 2.348666 CCATTTCAGTGCTAGTACGTGC 59.651 50.000 5.25 0.00 0.00 5.34
2552 2905 2.348666 GCCATTTCAGTGCTAGTACGTG 59.651 50.000 5.25 4.95 0.00 4.49
2553 2906 2.028476 TGCCATTTCAGTGCTAGTACGT 60.028 45.455 5.25 0.00 0.00 3.57
2554 2907 2.604914 CTGCCATTTCAGTGCTAGTACG 59.395 50.000 5.25 1.31 0.00 3.67
2555 2908 2.939103 CCTGCCATTTCAGTGCTAGTAC 59.061 50.000 2.24 2.24 32.32 2.73
2556 2909 2.837591 TCCTGCCATTTCAGTGCTAGTA 59.162 45.455 0.00 0.00 32.32 1.82
2557 2910 1.630369 TCCTGCCATTTCAGTGCTAGT 59.370 47.619 0.00 0.00 32.32 2.57
2558 2911 2.408271 TCCTGCCATTTCAGTGCTAG 57.592 50.000 0.00 0.00 32.32 3.42
2584 2938 8.522178 ACTGAATGTACGAAAAACAAAACAAA 57.478 26.923 0.00 0.00 0.00 2.83
2616 3221 4.223659 CAGGTAACGGCAATTGTTGTTAC 58.776 43.478 28.34 28.34 43.58 2.50
2617 3222 4.491234 CAGGTAACGGCAATTGTTGTTA 57.509 40.909 15.96 15.96 46.39 2.41
2631 3236 1.135972 CAACAGTGATGCGCAGGTAAC 60.136 52.381 18.32 11.22 0.00 2.50
2665 3277 4.089361 TCTGGCTTTCAGATCTACACAGA 58.911 43.478 0.00 1.54 46.71 3.41
2666 3278 4.462508 TCTGGCTTTCAGATCTACACAG 57.537 45.455 0.00 0.00 46.71 3.66
2733 4353 2.083774 TCGCATGAGTTTTGGATGGTC 58.916 47.619 0.00 0.00 0.00 4.02
2792 4412 3.015327 GTGCCATGAGATTTTCTCTGCT 58.985 45.455 0.00 0.00 43.73 4.24
2794 4414 3.349927 TGGTGCCATGAGATTTTCTCTG 58.650 45.455 0.00 2.67 43.73 3.35
2796 4416 3.614092 TCTGGTGCCATGAGATTTTCTC 58.386 45.455 0.00 0.00 43.65 2.87
2798 4418 3.698040 ACATCTGGTGCCATGAGATTTTC 59.302 43.478 0.00 0.00 0.00 2.29
2799 4419 3.446161 CACATCTGGTGCCATGAGATTTT 59.554 43.478 0.00 0.00 41.36 1.82
2800 4420 3.021695 CACATCTGGTGCCATGAGATTT 58.978 45.455 0.00 0.00 41.36 2.17
2801 4421 2.651455 CACATCTGGTGCCATGAGATT 58.349 47.619 0.00 0.00 41.36 2.40
2802 4422 2.343484 CACATCTGGTGCCATGAGAT 57.657 50.000 0.00 0.00 41.36 2.75
2803 4423 3.867549 CACATCTGGTGCCATGAGA 57.132 52.632 0.00 0.00 41.36 3.27
2883 4514 4.515191 TCTGTTAAGGTTCATGTTCTGCAC 59.485 41.667 0.00 0.00 0.00 4.57
2904 4535 0.464036 TACCGAGCGGCAATCATTCT 59.536 50.000 9.14 0.00 39.32 2.40
2937 4568 9.226606 TCGTCTATAGGTCAAATTTGTCAAATT 57.773 29.630 16.26 16.26 42.62 1.82
2938 4569 8.786826 TCGTCTATAGGTCAAATTTGTCAAAT 57.213 30.769 17.47 4.91 0.00 2.32
2939 4570 8.610248 TTCGTCTATAGGTCAAATTTGTCAAA 57.390 30.769 17.47 0.00 0.00 2.69
2940 4571 8.610248 TTTCGTCTATAGGTCAAATTTGTCAA 57.390 30.769 17.47 5.31 0.00 3.18
2941 4572 8.786826 ATTTCGTCTATAGGTCAAATTTGTCA 57.213 30.769 17.47 0.00 0.00 3.58
2942 4573 8.879759 TGATTTCGTCTATAGGTCAAATTTGTC 58.120 33.333 17.47 12.07 0.00 3.18
2943 4574 8.786826 TGATTTCGTCTATAGGTCAAATTTGT 57.213 30.769 17.47 1.67 0.00 2.83
2947 4578 9.613428 TGATTTGATTTCGTCTATAGGTCAAAT 57.387 29.630 17.06 17.06 43.48 2.32
2948 4579 8.879759 GTGATTTGATTTCGTCTATAGGTCAAA 58.120 33.333 0.00 7.93 38.14 2.69
2949 4580 8.038351 TGTGATTTGATTTCGTCTATAGGTCAA 58.962 33.333 0.00 0.00 0.00 3.18
2950 4581 7.552459 TGTGATTTGATTTCGTCTATAGGTCA 58.448 34.615 0.00 0.00 0.00 4.02
2951 4582 7.921214 TCTGTGATTTGATTTCGTCTATAGGTC 59.079 37.037 0.00 0.00 0.00 3.85
2952 4583 7.782049 TCTGTGATTTGATTTCGTCTATAGGT 58.218 34.615 0.00 0.00 0.00 3.08
2953 4584 8.648557 TTCTGTGATTTGATTTCGTCTATAGG 57.351 34.615 0.00 0.00 0.00 2.57
2955 4586 9.816354 TCATTCTGTGATTTGATTTCGTCTATA 57.184 29.630 0.00 0.00 0.00 1.31
2956 4587 8.722480 TCATTCTGTGATTTGATTTCGTCTAT 57.278 30.769 0.00 0.00 0.00 1.98
2957 4588 8.443160 GTTCATTCTGTGATTTGATTTCGTCTA 58.557 33.333 0.00 0.00 36.54 2.59
2958 4589 7.173907 AGTTCATTCTGTGATTTGATTTCGTCT 59.826 33.333 0.00 0.00 36.54 4.18
2959 4590 7.301054 AGTTCATTCTGTGATTTGATTTCGTC 58.699 34.615 0.00 0.00 36.54 4.20
2960 4591 7.206981 AGTTCATTCTGTGATTTGATTTCGT 57.793 32.000 0.00 0.00 36.54 3.85
2961 4592 9.430838 GATAGTTCATTCTGTGATTTGATTTCG 57.569 33.333 0.00 0.00 36.54 3.46
2962 4593 9.727627 GGATAGTTCATTCTGTGATTTGATTTC 57.272 33.333 0.00 0.00 36.54 2.17
2963 4594 8.400947 CGGATAGTTCATTCTGTGATTTGATTT 58.599 33.333 0.00 0.00 36.54 2.17
2964 4595 7.554118 ACGGATAGTTCATTCTGTGATTTGATT 59.446 33.333 0.00 0.00 36.54 2.57
2965 4596 7.050377 ACGGATAGTTCATTCTGTGATTTGAT 58.950 34.615 0.00 0.00 36.54 2.57
2966 4597 6.406370 ACGGATAGTTCATTCTGTGATTTGA 58.594 36.000 0.00 0.00 36.54 2.69
2967 4598 6.668541 ACGGATAGTTCATTCTGTGATTTG 57.331 37.500 0.00 0.00 36.54 2.32
2972 4603 5.639506 AGTTTCACGGATAGTTCATTCTGTG 59.360 40.000 5.70 5.70 46.17 3.66
2973 4604 5.794894 AGTTTCACGGATAGTTCATTCTGT 58.205 37.500 0.00 0.00 31.63 3.41
2974 4605 8.425577 AATAGTTTCACGGATAGTTCATTCTG 57.574 34.615 0.00 0.00 0.00 3.02
2975 4606 9.099454 GAAATAGTTTCACGGATAGTTCATTCT 57.901 33.333 0.00 0.00 39.45 2.40
2976 4607 8.879759 TGAAATAGTTTCACGGATAGTTCATTC 58.120 33.333 1.24 0.00 44.21 2.67
2977 4608 8.786826 TGAAATAGTTTCACGGATAGTTCATT 57.213 30.769 1.24 0.00 44.21 2.57
2990 4621 1.463056 CAGCCGCGTGAAATAGTTTCA 59.537 47.619 4.92 1.24 46.68 2.69
2991 4622 1.730064 TCAGCCGCGTGAAATAGTTTC 59.270 47.619 4.92 0.00 40.08 2.78
2992 4623 1.463444 GTCAGCCGCGTGAAATAGTTT 59.537 47.619 4.92 0.00 0.00 2.66
2993 4624 1.076332 GTCAGCCGCGTGAAATAGTT 58.924 50.000 4.92 0.00 0.00 2.24
2994 4625 0.739813 GGTCAGCCGCGTGAAATAGT 60.740 55.000 4.92 0.00 0.00 2.12
2995 4626 2.006772 GGTCAGCCGCGTGAAATAG 58.993 57.895 4.92 0.00 0.00 1.73
2996 4627 4.195308 GGTCAGCCGCGTGAAATA 57.805 55.556 4.92 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.