Multiple sequence alignment - TraesCS2D01G158000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G158000 chr2D 100.000 2261 0 0 1 2261 101452710 101454970 0.000000e+00 4176.0
1 TraesCS2D01G158000 chr2A 88.190 1050 49 27 617 1630 100781181 100782191 0.000000e+00 1182.0
2 TraesCS2D01G158000 chr2A 92.484 612 32 6 1652 2261 41595934 41595335 0.000000e+00 863.0
3 TraesCS2D01G158000 chr2A 77.500 280 38 18 1632 1895 90047583 90047853 6.510000e-31 145.0
4 TraesCS2D01G158000 chr2A 100.000 28 0 0 233 260 592375443 592375470 4.000000e-03 52.8
5 TraesCS2D01G158000 chr2B 88.086 1024 47 34 607 1584 152701284 152702278 0.000000e+00 1146.0
6 TraesCS2D01G158000 chr2B 85.526 228 19 5 12 238 152650222 152650436 2.260000e-55 226.0
7 TraesCS2D01G158000 chr2B 100.000 29 0 0 1985 2013 427879173 427879201 1.000000e-03 54.7
8 TraesCS2D01G158000 chr4A 93.513 632 31 2 1630 2261 637212580 637213201 0.000000e+00 931.0
9 TraesCS2D01G158000 chr4A 93.279 610 30 4 1652 2261 603353853 603354451 0.000000e+00 889.0
10 TraesCS2D01G158000 chr7A 92.247 632 36 7 1630 2261 310306201 310305583 0.000000e+00 883.0
11 TraesCS2D01G158000 chr7A 80.687 233 42 3 234 464 657891915 657892146 6.420000e-41 178.0
12 TraesCS2D01G158000 chr7A 76.190 231 45 6 1619 1841 80426774 80426546 1.840000e-21 113.0
13 TraesCS2D01G158000 chr3A 92.787 610 32 5 1652 2261 677825423 677826020 0.000000e+00 872.0
14 TraesCS2D01G158000 chr3A 92.775 609 33 4 1653 2261 489655655 489655058 0.000000e+00 870.0
15 TraesCS2D01G158000 chr3A 87.117 326 33 3 1625 1942 275544907 275545231 5.940000e-96 361.0
16 TraesCS2D01G158000 chr3A 84.979 233 23 4 2029 2261 275545225 275545445 2.260000e-55 226.0
17 TraesCS2D01G158000 chr5A 92.447 609 35 4 1653 2261 658366838 658366241 0.000000e+00 859.0
18 TraesCS2D01G158000 chr5B 93.407 546 26 3 1717 2261 692806951 692807487 0.000000e+00 800.0
19 TraesCS2D01G158000 chr1D 85.774 239 32 2 237 474 427870368 427870131 3.730000e-63 252.0
20 TraesCS2D01G158000 chr3D 84.647 241 31 6 236 474 426049827 426050063 3.750000e-58 235.0
21 TraesCS2D01G158000 chr7B 83.200 250 39 3 234 481 384201305 384201057 2.260000e-55 226.0
22 TraesCS2D01G158000 chr6D 82.158 241 39 4 235 473 157371307 157371545 1.060000e-48 204.0
23 TraesCS2D01G158000 chr7D 82.819 227 34 4 234 458 388997655 388997432 4.930000e-47 198.0
24 TraesCS2D01G158000 chr4B 80.328 244 47 1 233 475 47019493 47019250 1.380000e-42 183.0
25 TraesCS2D01G158000 chr1A 79.167 240 43 7 237 473 362190488 362190253 2.320000e-35 159.0
26 TraesCS2D01G158000 chr6B 80.095 211 36 6 267 473 715862939 715862731 3.890000e-33 152.0
27 TraesCS2D01G158000 chr6B 91.111 45 4 0 1629 1673 27883256 27883300 6.740000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G158000 chr2D 101452710 101454970 2260 False 4176.0 4176 100.000 1 2261 1 chr2D.!!$F1 2260
1 TraesCS2D01G158000 chr2A 100781181 100782191 1010 False 1182.0 1182 88.190 617 1630 1 chr2A.!!$F2 1013
2 TraesCS2D01G158000 chr2A 41595335 41595934 599 True 863.0 863 92.484 1652 2261 1 chr2A.!!$R1 609
3 TraesCS2D01G158000 chr2B 152701284 152702278 994 False 1146.0 1146 88.086 607 1584 1 chr2B.!!$F2 977
4 TraesCS2D01G158000 chr4A 637212580 637213201 621 False 931.0 931 93.513 1630 2261 1 chr4A.!!$F2 631
5 TraesCS2D01G158000 chr4A 603353853 603354451 598 False 889.0 889 93.279 1652 2261 1 chr4A.!!$F1 609
6 TraesCS2D01G158000 chr7A 310305583 310306201 618 True 883.0 883 92.247 1630 2261 1 chr7A.!!$R2 631
7 TraesCS2D01G158000 chr3A 677825423 677826020 597 False 872.0 872 92.787 1652 2261 1 chr3A.!!$F1 609
8 TraesCS2D01G158000 chr3A 489655058 489655655 597 True 870.0 870 92.775 1653 2261 1 chr3A.!!$R1 608
9 TraesCS2D01G158000 chr3A 275544907 275545445 538 False 293.5 361 86.048 1625 2261 2 chr3A.!!$F2 636
10 TraesCS2D01G158000 chr5A 658366241 658366838 597 True 859.0 859 92.447 1653 2261 1 chr5A.!!$R1 608
11 TraesCS2D01G158000 chr5B 692806951 692807487 536 False 800.0 800 93.407 1717 2261 1 chr5B.!!$F1 544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
254 255 0.039618 TACTACCTCCGTCCGGGTTT 59.96 55.0 0.0 0.0 37.07 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1276 1311 0.689055 TGCTGCATCCAGTGAACTCT 59.311 50.0 0.0 0.0 41.26 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.945645 AGAGGACAGGGACGAACA 57.054 55.556 0.00 0.00 0.00 3.18
18 19 2.659800 AGAGGACAGGGACGAACAG 58.340 57.895 0.00 0.00 0.00 3.16
19 20 0.112606 AGAGGACAGGGACGAACAGA 59.887 55.000 0.00 0.00 0.00 3.41
20 21 0.966920 GAGGACAGGGACGAACAGAA 59.033 55.000 0.00 0.00 0.00 3.02
21 22 1.343465 GAGGACAGGGACGAACAGAAA 59.657 52.381 0.00 0.00 0.00 2.52
22 23 1.978580 AGGACAGGGACGAACAGAAAT 59.021 47.619 0.00 0.00 0.00 2.17
23 24 3.170717 AGGACAGGGACGAACAGAAATA 58.829 45.455 0.00 0.00 0.00 1.40
24 25 3.775316 AGGACAGGGACGAACAGAAATAT 59.225 43.478 0.00 0.00 0.00 1.28
25 26 4.225267 AGGACAGGGACGAACAGAAATATT 59.775 41.667 0.00 0.00 0.00 1.28
26 27 5.424252 AGGACAGGGACGAACAGAAATATTA 59.576 40.000 0.00 0.00 0.00 0.98
27 28 5.753921 GGACAGGGACGAACAGAAATATTAG 59.246 44.000 0.00 0.00 0.00 1.73
28 29 6.295719 ACAGGGACGAACAGAAATATTAGT 57.704 37.500 0.00 0.00 0.00 2.24
29 30 6.106673 ACAGGGACGAACAGAAATATTAGTG 58.893 40.000 0.00 0.00 0.00 2.74
30 31 6.106673 CAGGGACGAACAGAAATATTAGTGT 58.893 40.000 0.00 0.00 0.00 3.55
31 32 6.036083 CAGGGACGAACAGAAATATTAGTGTG 59.964 42.308 3.92 0.00 0.00 3.82
32 33 5.873164 GGGACGAACAGAAATATTAGTGTGT 59.127 40.000 3.92 0.00 0.00 3.72
33 34 6.370718 GGGACGAACAGAAATATTAGTGTGTT 59.629 38.462 3.10 3.10 0.00 3.32
34 35 7.412672 GGGACGAACAGAAATATTAGTGTGTTC 60.413 40.741 15.32 15.32 40.13 3.18
35 36 7.360575 ACGAACAGAAATATTAGTGTGTTCC 57.639 36.000 17.77 6.88 40.32 3.62
36 37 7.159372 ACGAACAGAAATATTAGTGTGTTCCT 58.841 34.615 17.77 8.93 40.32 3.36
37 38 7.660208 ACGAACAGAAATATTAGTGTGTTCCTT 59.340 33.333 17.77 8.03 40.32 3.36
38 39 8.504005 CGAACAGAAATATTAGTGTGTTCCTTT 58.496 33.333 17.77 0.00 40.32 3.11
42 43 9.329913 CAGAAATATTAGTGTGTTCCTTTTTCG 57.670 33.333 0.00 0.00 0.00 3.46
43 44 9.063615 AGAAATATTAGTGTGTTCCTTTTTCGT 57.936 29.630 0.00 0.00 0.00 3.85
44 45 9.113876 GAAATATTAGTGTGTTCCTTTTTCGTG 57.886 33.333 0.00 0.00 0.00 4.35
45 46 7.739498 ATATTAGTGTGTTCCTTTTTCGTGT 57.261 32.000 0.00 0.00 0.00 4.49
46 47 5.883503 TTAGTGTGTTCCTTTTTCGTGTT 57.116 34.783 0.00 0.00 0.00 3.32
47 48 4.776795 AGTGTGTTCCTTTTTCGTGTTT 57.223 36.364 0.00 0.00 0.00 2.83
48 49 4.481463 AGTGTGTTCCTTTTTCGTGTTTG 58.519 39.130 0.00 0.00 0.00 2.93
49 50 3.060230 GTGTGTTCCTTTTTCGTGTTTGC 59.940 43.478 0.00 0.00 0.00 3.68
50 51 3.057174 TGTGTTCCTTTTTCGTGTTTGCT 60.057 39.130 0.00 0.00 0.00 3.91
51 52 4.156190 TGTGTTCCTTTTTCGTGTTTGCTA 59.844 37.500 0.00 0.00 0.00 3.49
52 53 5.096849 GTGTTCCTTTTTCGTGTTTGCTAA 58.903 37.500 0.00 0.00 0.00 3.09
53 54 5.573669 GTGTTCCTTTTTCGTGTTTGCTAAA 59.426 36.000 0.00 0.00 0.00 1.85
54 55 6.254804 GTGTTCCTTTTTCGTGTTTGCTAAAT 59.745 34.615 0.00 0.00 0.00 1.40
55 56 6.254589 TGTTCCTTTTTCGTGTTTGCTAAATG 59.745 34.615 0.00 0.00 0.00 2.32
56 57 6.137794 TCCTTTTTCGTGTTTGCTAAATGA 57.862 33.333 0.00 0.00 0.00 2.57
57 58 5.974751 TCCTTTTTCGTGTTTGCTAAATGAC 59.025 36.000 0.00 0.00 0.00 3.06
58 59 5.746245 CCTTTTTCGTGTTTGCTAAATGACA 59.254 36.000 0.00 0.00 0.00 3.58
59 60 6.074888 CCTTTTTCGTGTTTGCTAAATGACAG 60.075 38.462 0.00 0.00 0.00 3.51
60 61 4.481930 TTCGTGTTTGCTAAATGACAGG 57.518 40.909 0.00 0.00 0.00 4.00
61 62 3.472652 TCGTGTTTGCTAAATGACAGGT 58.527 40.909 0.00 0.00 31.79 4.00
62 63 4.633175 TCGTGTTTGCTAAATGACAGGTA 58.367 39.130 0.00 0.00 31.79 3.08
63 64 4.449743 TCGTGTTTGCTAAATGACAGGTAC 59.550 41.667 0.00 0.00 31.79 3.34
64 65 4.378046 CGTGTTTGCTAAATGACAGGTACC 60.378 45.833 2.73 2.73 0.00 3.34
65 66 4.760204 GTGTTTGCTAAATGACAGGTACCT 59.240 41.667 9.21 9.21 0.00 3.08
67 68 4.901197 TTGCTAAATGACAGGTACCTGA 57.099 40.909 41.87 25.01 46.30 3.86
68 69 4.901197 TGCTAAATGACAGGTACCTGAA 57.099 40.909 41.87 30.05 46.30 3.02
69 70 5.435686 TGCTAAATGACAGGTACCTGAAT 57.564 39.130 41.87 30.74 46.30 2.57
70 71 5.815581 TGCTAAATGACAGGTACCTGAATT 58.184 37.500 41.87 33.54 46.30 2.17
71 72 6.245408 TGCTAAATGACAGGTACCTGAATTT 58.755 36.000 41.87 37.87 46.30 1.82
72 73 6.719370 TGCTAAATGACAGGTACCTGAATTTT 59.281 34.615 36.86 32.21 46.30 1.82
73 74 7.232534 TGCTAAATGACAGGTACCTGAATTTTT 59.767 33.333 36.86 31.12 46.30 1.94
95 96 7.857734 TTTTTGTAGTCTCAGTCATGTCAAA 57.142 32.000 0.00 0.00 0.00 2.69
96 97 8.450578 TTTTTGTAGTCTCAGTCATGTCAAAT 57.549 30.769 0.00 0.00 0.00 2.32
97 98 7.658179 TTTGTAGTCTCAGTCATGTCAAATC 57.342 36.000 0.00 0.00 0.00 2.17
98 99 5.402398 TGTAGTCTCAGTCATGTCAAATCG 58.598 41.667 0.00 0.00 0.00 3.34
99 100 4.790765 AGTCTCAGTCATGTCAAATCGA 57.209 40.909 0.00 0.00 0.00 3.59
100 101 5.139435 AGTCTCAGTCATGTCAAATCGAA 57.861 39.130 0.00 0.00 0.00 3.71
101 102 4.926238 AGTCTCAGTCATGTCAAATCGAAC 59.074 41.667 0.00 0.00 0.00 3.95
102 103 3.920412 TCTCAGTCATGTCAAATCGAACG 59.080 43.478 0.00 0.00 0.00 3.95
103 104 3.908213 TCAGTCATGTCAAATCGAACGA 58.092 40.909 0.00 0.00 0.00 3.85
104 105 3.920412 TCAGTCATGTCAAATCGAACGAG 59.080 43.478 2.94 0.00 0.00 4.18
105 106 3.675225 CAGTCATGTCAAATCGAACGAGT 59.325 43.478 2.94 0.00 0.00 4.18
106 107 3.921021 AGTCATGTCAAATCGAACGAGTC 59.079 43.478 2.94 0.00 0.00 3.36
107 108 3.060895 GTCATGTCAAATCGAACGAGTCC 59.939 47.826 2.94 0.00 0.00 3.85
108 109 1.693467 TGTCAAATCGAACGAGTCCG 58.307 50.000 2.94 0.00 42.50 4.79
109 110 1.267533 TGTCAAATCGAACGAGTCCGA 59.732 47.619 2.94 0.00 39.50 4.55
110 111 2.287728 TGTCAAATCGAACGAGTCCGAA 60.288 45.455 2.94 0.00 38.36 4.30
111 112 2.341760 GTCAAATCGAACGAGTCCGAAG 59.658 50.000 2.94 0.00 38.36 3.79
137 138 4.752594 GGGGTGAGGGGCTGGGTA 62.753 72.222 0.00 0.00 0.00 3.69
138 139 2.612746 GGGTGAGGGGCTGGGTAA 60.613 66.667 0.00 0.00 0.00 2.85
139 140 2.680370 GGGTGAGGGGCTGGGTAAG 61.680 68.421 0.00 0.00 0.00 2.34
140 141 2.680370 GGTGAGGGGCTGGGTAAGG 61.680 68.421 0.00 0.00 0.00 2.69
141 142 1.615424 GTGAGGGGCTGGGTAAGGA 60.615 63.158 0.00 0.00 0.00 3.36
142 143 1.306997 TGAGGGGCTGGGTAAGGAG 60.307 63.158 0.00 0.00 0.00 3.69
143 144 2.692741 AGGGGCTGGGTAAGGAGC 60.693 66.667 0.00 0.00 34.23 4.70
144 145 4.176752 GGGGCTGGGTAAGGAGCG 62.177 72.222 0.00 0.00 35.95 5.03
145 146 4.176752 GGGCTGGGTAAGGAGCGG 62.177 72.222 0.00 0.00 35.95 5.52
146 147 3.400054 GGCTGGGTAAGGAGCGGT 61.400 66.667 0.00 0.00 35.95 5.68
147 148 2.062177 GGCTGGGTAAGGAGCGGTA 61.062 63.158 0.00 0.00 35.95 4.02
148 149 1.442148 GCTGGGTAAGGAGCGGTAG 59.558 63.158 0.00 0.00 0.00 3.18
149 150 1.442148 CTGGGTAAGGAGCGGTAGC 59.558 63.158 0.00 0.00 45.58 3.58
161 162 2.071688 GCGGTAGCACATCTAGATGG 57.928 55.000 31.19 21.96 42.91 3.51
162 163 1.613925 GCGGTAGCACATCTAGATGGA 59.386 52.381 31.19 14.29 42.91 3.41
163 164 2.232452 GCGGTAGCACATCTAGATGGAT 59.768 50.000 31.19 21.95 42.91 3.41
164 165 3.842820 CGGTAGCACATCTAGATGGATG 58.157 50.000 31.19 23.11 45.96 3.51
165 166 3.507622 CGGTAGCACATCTAGATGGATGA 59.492 47.826 31.19 14.61 44.01 2.92
166 167 4.159321 CGGTAGCACATCTAGATGGATGAT 59.841 45.833 31.19 23.09 44.01 2.45
167 168 5.417811 GGTAGCACATCTAGATGGATGATG 58.582 45.833 31.19 21.89 44.01 3.07
169 170 5.149973 AGCACATCTAGATGGATGATGTC 57.850 43.478 31.19 17.21 45.95 3.06
170 171 4.839550 AGCACATCTAGATGGATGATGTCT 59.160 41.667 31.19 18.68 45.95 3.41
171 172 6.015282 AGCACATCTAGATGGATGATGTCTA 58.985 40.000 31.19 0.00 45.95 2.59
172 173 6.668718 AGCACATCTAGATGGATGATGTCTAT 59.331 38.462 31.19 7.78 45.95 1.98
173 174 7.180587 AGCACATCTAGATGGATGATGTCTATT 59.819 37.037 31.19 7.60 45.95 1.73
174 175 7.278203 GCACATCTAGATGGATGATGTCTATTG 59.722 40.741 31.19 18.28 45.95 1.90
175 176 7.764901 CACATCTAGATGGATGATGTCTATTGG 59.235 40.741 31.19 5.60 45.95 3.16
176 177 7.677319 ACATCTAGATGGATGATGTCTATTGGA 59.323 37.037 31.19 0.00 44.97 3.53
177 178 8.706521 CATCTAGATGGATGATGTCTATTGGAT 58.293 37.037 22.89 0.00 44.01 3.41
178 179 8.676397 TCTAGATGGATGATGTCTATTGGATT 57.324 34.615 0.00 0.00 0.00 3.01
179 180 9.109246 TCTAGATGGATGATGTCTATTGGATTT 57.891 33.333 0.00 0.00 0.00 2.17
180 181 9.736414 CTAGATGGATGATGTCTATTGGATTTT 57.264 33.333 0.00 0.00 0.00 1.82
181 182 8.405418 AGATGGATGATGTCTATTGGATTTTG 57.595 34.615 0.00 0.00 0.00 2.44
182 183 8.222637 AGATGGATGATGTCTATTGGATTTTGA 58.777 33.333 0.00 0.00 0.00 2.69
183 184 8.771521 ATGGATGATGTCTATTGGATTTTGAA 57.228 30.769 0.00 0.00 0.00 2.69
184 185 7.999679 TGGATGATGTCTATTGGATTTTGAAC 58.000 34.615 0.00 0.00 0.00 3.18
185 186 7.134815 GGATGATGTCTATTGGATTTTGAACG 58.865 38.462 0.00 0.00 0.00 3.95
186 187 6.435430 TGATGTCTATTGGATTTTGAACGG 57.565 37.500 0.00 0.00 0.00 4.44
187 188 6.176896 TGATGTCTATTGGATTTTGAACGGA 58.823 36.000 0.00 0.00 0.00 4.69
188 189 5.873179 TGTCTATTGGATTTTGAACGGAC 57.127 39.130 0.00 0.00 0.00 4.79
189 190 4.390603 TGTCTATTGGATTTTGAACGGACG 59.609 41.667 0.00 0.00 0.00 4.79
190 191 3.936453 TCTATTGGATTTTGAACGGACGG 59.064 43.478 0.00 0.00 0.00 4.79
191 192 1.970092 TTGGATTTTGAACGGACGGT 58.030 45.000 0.00 0.00 0.00 4.83
192 193 1.970092 TGGATTTTGAACGGACGGTT 58.030 45.000 0.00 0.00 42.96 4.44
193 194 1.604755 TGGATTTTGAACGGACGGTTG 59.395 47.619 2.75 0.00 39.50 3.77
194 195 1.874872 GGATTTTGAACGGACGGTTGA 59.125 47.619 2.75 0.00 39.50 3.18
195 196 2.095919 GGATTTTGAACGGACGGTTGAG 60.096 50.000 2.75 0.00 39.50 3.02
196 197 2.312722 TTTTGAACGGACGGTTGAGA 57.687 45.000 2.75 0.00 39.50 3.27
197 198 2.536761 TTTGAACGGACGGTTGAGAT 57.463 45.000 2.75 0.00 39.50 2.75
198 199 2.074547 TTGAACGGACGGTTGAGATC 57.925 50.000 2.75 0.00 39.50 2.75
199 200 1.254026 TGAACGGACGGTTGAGATCT 58.746 50.000 2.75 0.00 39.50 2.75
200 201 1.201647 TGAACGGACGGTTGAGATCTC 59.798 52.381 16.21 16.21 39.50 2.75
201 202 0.170561 AACGGACGGTTGAGATCTCG 59.829 55.000 17.76 9.00 37.50 4.04
202 203 0.675837 ACGGACGGTTGAGATCTCGA 60.676 55.000 17.76 13.50 0.00 4.04
203 204 0.663688 CGGACGGTTGAGATCTCGAT 59.336 55.000 15.86 0.00 0.00 3.59
204 205 1.334239 CGGACGGTTGAGATCTCGATC 60.334 57.143 15.86 14.23 38.09 3.69
205 206 1.676529 GGACGGTTGAGATCTCGATCA 59.323 52.381 20.94 1.28 40.22 2.92
206 207 2.287308 GGACGGTTGAGATCTCGATCAG 60.287 54.545 20.94 15.69 40.22 2.90
207 208 2.614520 GACGGTTGAGATCTCGATCAGA 59.385 50.000 20.94 0.00 40.22 3.27
208 209 3.017442 ACGGTTGAGATCTCGATCAGAA 58.983 45.455 20.94 5.55 40.22 3.02
209 210 3.444034 ACGGTTGAGATCTCGATCAGAAA 59.556 43.478 20.94 4.88 40.22 2.52
210 211 4.098654 ACGGTTGAGATCTCGATCAGAAAT 59.901 41.667 20.94 0.68 40.22 2.17
211 212 5.046529 CGGTTGAGATCTCGATCAGAAATT 58.953 41.667 20.94 0.00 40.22 1.82
212 213 5.051173 CGGTTGAGATCTCGATCAGAAATTG 60.051 44.000 20.94 1.59 40.22 2.32
213 214 6.045318 GGTTGAGATCTCGATCAGAAATTGA 58.955 40.000 17.14 0.00 40.22 2.57
214 215 6.019156 GGTTGAGATCTCGATCAGAAATTGAC 60.019 42.308 17.14 0.15 38.99 3.18
215 216 6.462552 TGAGATCTCGATCAGAAATTGACT 57.537 37.500 17.76 0.00 38.99 3.41
216 217 6.271566 TGAGATCTCGATCAGAAATTGACTG 58.728 40.000 17.76 6.58 38.99 3.51
217 218 5.599732 AGATCTCGATCAGAAATTGACTGG 58.400 41.667 9.38 0.00 38.99 4.00
218 219 3.525537 TCTCGATCAGAAATTGACTGGC 58.474 45.455 11.32 5.42 38.99 4.85
219 220 2.270923 TCGATCAGAAATTGACTGGCG 58.729 47.619 11.32 13.65 38.99 5.69
220 221 1.328680 CGATCAGAAATTGACTGGCGG 59.671 52.381 11.32 0.00 38.99 6.13
221 222 2.359900 GATCAGAAATTGACTGGCGGT 58.640 47.619 0.00 0.00 38.99 5.68
222 223 1.522668 TCAGAAATTGACTGGCGGTG 58.477 50.000 2.25 0.00 36.22 4.94
223 224 1.071542 TCAGAAATTGACTGGCGGTGA 59.928 47.619 2.25 0.00 36.22 4.02
224 225 1.879380 CAGAAATTGACTGGCGGTGAA 59.121 47.619 2.25 0.78 0.00 3.18
225 226 2.293122 CAGAAATTGACTGGCGGTGAAA 59.707 45.455 2.25 0.00 0.00 2.69
226 227 2.955660 AGAAATTGACTGGCGGTGAAAA 59.044 40.909 2.25 0.00 0.00 2.29
227 228 3.573967 AGAAATTGACTGGCGGTGAAAAT 59.426 39.130 2.25 0.00 0.00 1.82
228 229 4.039124 AGAAATTGACTGGCGGTGAAAATT 59.961 37.500 2.25 4.66 0.00 1.82
229 230 4.335400 AATTGACTGGCGGTGAAAATTT 57.665 36.364 2.25 0.00 0.00 1.82
230 231 3.363341 TTGACTGGCGGTGAAAATTTC 57.637 42.857 2.25 0.00 0.00 2.17
231 232 1.611491 TGACTGGCGGTGAAAATTTCC 59.389 47.619 2.25 0.00 0.00 3.13
232 233 1.611491 GACTGGCGGTGAAAATTTCCA 59.389 47.619 2.25 0.00 0.00 3.53
233 234 2.035321 GACTGGCGGTGAAAATTTCCAA 59.965 45.455 2.25 0.00 0.00 3.53
234 235 2.035832 ACTGGCGGTGAAAATTTCCAAG 59.964 45.455 0.00 0.00 0.00 3.61
235 236 2.035632 TGGCGGTGAAAATTTCCAAGT 58.964 42.857 3.00 0.00 0.00 3.16
236 237 3.223435 TGGCGGTGAAAATTTCCAAGTA 58.777 40.909 3.00 0.00 0.00 2.24
237 238 3.004944 TGGCGGTGAAAATTTCCAAGTAC 59.995 43.478 3.00 0.00 0.00 2.73
238 239 3.254903 GGCGGTGAAAATTTCCAAGTACT 59.745 43.478 3.00 0.00 0.00 2.73
239 240 4.456566 GGCGGTGAAAATTTCCAAGTACTA 59.543 41.667 3.00 0.00 0.00 1.82
240 241 5.388111 GCGGTGAAAATTTCCAAGTACTAC 58.612 41.667 3.00 0.00 0.00 2.73
241 242 5.618418 GCGGTGAAAATTTCCAAGTACTACC 60.618 44.000 3.00 0.96 0.00 3.18
242 243 5.704053 CGGTGAAAATTTCCAAGTACTACCT 59.296 40.000 3.00 0.00 0.00 3.08
243 244 6.128363 CGGTGAAAATTTCCAAGTACTACCTC 60.128 42.308 3.00 0.00 0.00 3.85
244 245 6.150641 GGTGAAAATTTCCAAGTACTACCTCC 59.849 42.308 3.00 0.00 0.00 4.30
245 246 5.935789 TGAAAATTTCCAAGTACTACCTCCG 59.064 40.000 3.00 0.00 0.00 4.63
246 247 5.494390 AAATTTCCAAGTACTACCTCCGT 57.506 39.130 0.00 0.00 0.00 4.69
247 248 4.732672 ATTTCCAAGTACTACCTCCGTC 57.267 45.455 0.00 0.00 0.00 4.79
248 249 2.134789 TCCAAGTACTACCTCCGTCC 57.865 55.000 0.00 0.00 0.00 4.79
249 250 0.737219 CCAAGTACTACCTCCGTCCG 59.263 60.000 0.00 0.00 0.00 4.79
250 251 0.737219 CAAGTACTACCTCCGTCCGG 59.263 60.000 0.00 0.00 0.00 5.14
251 252 0.394899 AAGTACTACCTCCGTCCGGG 60.395 60.000 0.00 0.00 35.59 5.73
252 253 1.077429 GTACTACCTCCGTCCGGGT 60.077 63.158 0.00 0.00 39.40 5.28
253 254 0.681243 GTACTACCTCCGTCCGGGTT 60.681 60.000 0.00 0.00 37.07 4.11
254 255 0.039618 TACTACCTCCGTCCGGGTTT 59.960 55.000 0.00 0.00 37.07 3.27
255 256 0.039618 ACTACCTCCGTCCGGGTTTA 59.960 55.000 0.00 0.00 37.07 2.01
256 257 1.342374 ACTACCTCCGTCCGGGTTTAT 60.342 52.381 0.00 0.00 37.07 1.40
257 258 1.758862 CTACCTCCGTCCGGGTTTATT 59.241 52.381 0.00 0.00 37.07 1.40
258 259 1.864669 ACCTCCGTCCGGGTTTATTA 58.135 50.000 0.00 0.00 37.00 0.98
259 260 1.758862 ACCTCCGTCCGGGTTTATTAG 59.241 52.381 0.00 0.00 37.00 1.73
260 261 1.758862 CCTCCGTCCGGGTTTATTAGT 59.241 52.381 0.00 0.00 37.00 2.24
261 262 2.169144 CCTCCGTCCGGGTTTATTAGTT 59.831 50.000 0.00 0.00 37.00 2.24
262 263 3.451526 CTCCGTCCGGGTTTATTAGTTC 58.548 50.000 0.00 0.00 37.00 3.01
263 264 3.099141 TCCGTCCGGGTTTATTAGTTCT 58.901 45.455 0.00 0.00 37.00 3.01
264 265 3.131046 TCCGTCCGGGTTTATTAGTTCTC 59.869 47.826 0.00 0.00 37.00 2.87
265 266 3.451526 CGTCCGGGTTTATTAGTTCTCC 58.548 50.000 0.00 0.00 0.00 3.71
266 267 3.131755 CGTCCGGGTTTATTAGTTCTCCT 59.868 47.826 0.00 0.00 0.00 3.69
267 268 4.382362 CGTCCGGGTTTATTAGTTCTCCTT 60.382 45.833 0.00 0.00 0.00 3.36
268 269 4.874396 GTCCGGGTTTATTAGTTCTCCTTG 59.126 45.833 0.00 0.00 0.00 3.61
269 270 4.533311 TCCGGGTTTATTAGTTCTCCTTGT 59.467 41.667 0.00 0.00 0.00 3.16
270 271 5.721000 TCCGGGTTTATTAGTTCTCCTTGTA 59.279 40.000 0.00 0.00 0.00 2.41
271 272 6.384886 TCCGGGTTTATTAGTTCTCCTTGTAT 59.615 38.462 0.00 0.00 0.00 2.29
272 273 7.052248 CCGGGTTTATTAGTTCTCCTTGTATT 58.948 38.462 0.00 0.00 0.00 1.89
273 274 7.555195 CCGGGTTTATTAGTTCTCCTTGTATTT 59.445 37.037 0.00 0.00 0.00 1.40
274 275 8.953313 CGGGTTTATTAGTTCTCCTTGTATTTT 58.047 33.333 0.00 0.00 0.00 1.82
362 363 9.942850 TCATTGAAAGTCACTATCAAGTATGAA 57.057 29.630 0.00 0.00 39.49 2.57
365 366 9.942850 TTGAAAGTCACTATCAAGTATGAATCA 57.057 29.630 0.00 0.00 39.49 2.57
366 367 9.942850 TGAAAGTCACTATCAAGTATGAATCAA 57.057 29.630 0.00 0.00 39.49 2.57
369 370 9.725019 AAGTCACTATCAAGTATGAATCAAACA 57.275 29.630 0.00 0.00 39.49 2.83
370 371 9.725019 AGTCACTATCAAGTATGAATCAAACAA 57.275 29.630 0.00 0.00 39.49 2.83
431 432 9.739276 AATCAAATCTATCACTAAAGTTGGACA 57.261 29.630 0.00 0.00 0.00 4.02
432 433 8.547967 TCAAATCTATCACTAAAGTTGGACAC 57.452 34.615 0.00 0.00 0.00 3.67
433 434 8.154203 TCAAATCTATCACTAAAGTTGGACACA 58.846 33.333 0.00 0.00 0.00 3.72
434 435 8.783093 CAAATCTATCACTAAAGTTGGACACAA 58.217 33.333 0.00 0.00 0.00 3.33
435 436 8.918202 AATCTATCACTAAAGTTGGACACAAA 57.082 30.769 0.00 0.00 38.54 2.83
436 437 8.918202 ATCTATCACTAAAGTTGGACACAAAA 57.082 30.769 0.00 0.00 38.54 2.44
437 438 8.918202 TCTATCACTAAAGTTGGACACAAAAT 57.082 30.769 0.00 0.00 38.54 1.82
440 441 7.867305 TCACTAAAGTTGGACACAAAATACA 57.133 32.000 0.00 0.00 38.54 2.29
441 442 8.282455 TCACTAAAGTTGGACACAAAATACAA 57.718 30.769 0.00 0.00 38.54 2.41
442 443 8.740906 TCACTAAAGTTGGACACAAAATACAAA 58.259 29.630 0.00 0.00 38.54 2.83
443 444 9.019764 CACTAAAGTTGGACACAAAATACAAAG 57.980 33.333 0.00 0.00 38.54 2.77
444 445 8.194769 ACTAAAGTTGGACACAAAATACAAAGG 58.805 33.333 0.00 0.00 38.54 3.11
445 446 5.529581 AGTTGGACACAAAATACAAAGGG 57.470 39.130 0.00 0.00 38.54 3.95
446 447 4.343814 AGTTGGACACAAAATACAAAGGGG 59.656 41.667 0.00 0.00 38.54 4.79
447 448 4.186077 TGGACACAAAATACAAAGGGGA 57.814 40.909 0.00 0.00 0.00 4.81
448 449 3.892588 TGGACACAAAATACAAAGGGGAC 59.107 43.478 0.00 0.00 0.00 4.46
449 450 6.681029 TTGGACACAAAATACAAAGGGGACC 61.681 44.000 0.00 0.00 41.26 4.46
463 464 1.746470 GGGACCAATAAACCAGGACG 58.254 55.000 0.00 0.00 0.00 4.79
464 465 1.279846 GGGACCAATAAACCAGGACGA 59.720 52.381 0.00 0.00 0.00 4.20
465 466 2.290450 GGGACCAATAAACCAGGACGAA 60.290 50.000 0.00 0.00 0.00 3.85
466 467 3.414269 GGACCAATAAACCAGGACGAAA 58.586 45.455 0.00 0.00 0.00 3.46
467 468 3.439129 GGACCAATAAACCAGGACGAAAG 59.561 47.826 0.00 0.00 0.00 2.62
486 487 8.660968 ACGAAAGTAGTACGTTACAAATAGAC 57.339 34.615 0.00 0.00 46.88 2.59
487 488 7.478667 ACGAAAGTAGTACGTTACAAATAGACG 59.521 37.037 0.00 1.37 46.88 4.18
488 489 7.498070 AAAGTAGTACGTTACAAATAGACGC 57.502 36.000 0.00 0.00 40.22 5.19
489 490 6.428385 AGTAGTACGTTACAAATAGACGCT 57.572 37.500 0.00 0.00 40.22 5.07
490 491 6.481984 AGTAGTACGTTACAAATAGACGCTC 58.518 40.000 0.00 0.00 40.22 5.03
491 492 5.300969 AGTACGTTACAAATAGACGCTCA 57.699 39.130 0.00 0.00 40.22 4.26
492 493 5.888105 AGTACGTTACAAATAGACGCTCAT 58.112 37.500 0.00 0.00 40.22 2.90
493 494 6.327934 AGTACGTTACAAATAGACGCTCATT 58.672 36.000 0.00 0.00 40.22 2.57
494 495 6.810182 AGTACGTTACAAATAGACGCTCATTT 59.190 34.615 0.00 0.00 40.22 2.32
495 496 6.091123 ACGTTACAAATAGACGCTCATTTC 57.909 37.500 0.00 0.00 40.22 2.17
496 497 5.867716 ACGTTACAAATAGACGCTCATTTCT 59.132 36.000 0.00 0.00 40.22 2.52
497 498 6.367969 ACGTTACAAATAGACGCTCATTTCTT 59.632 34.615 0.00 0.00 40.22 2.52
498 499 7.095355 ACGTTACAAATAGACGCTCATTTCTTT 60.095 33.333 0.00 0.00 40.22 2.52
499 500 7.744715 CGTTACAAATAGACGCTCATTTCTTTT 59.255 33.333 0.00 0.00 0.00 2.27
507 508 9.941664 ATAGACGCTCATTTCTTTTAATTGATG 57.058 29.630 0.00 0.00 0.00 3.07
508 509 8.044060 AGACGCTCATTTCTTTTAATTGATGA 57.956 30.769 0.00 0.00 0.00 2.92
509 510 8.514594 AGACGCTCATTTCTTTTAATTGATGAA 58.485 29.630 0.00 0.00 0.00 2.57
510 511 8.452989 ACGCTCATTTCTTTTAATTGATGAAC 57.547 30.769 0.00 0.00 0.00 3.18
511 512 7.271223 ACGCTCATTTCTTTTAATTGATGAACG 59.729 33.333 0.00 0.00 38.39 3.95
512 513 7.253420 CGCTCATTTCTTTTAATTGATGAACGG 60.253 37.037 0.00 0.00 32.57 4.44
513 514 7.754924 GCTCATTTCTTTTAATTGATGAACGGA 59.245 33.333 0.00 0.00 0.00 4.69
514 515 8.964420 TCATTTCTTTTAATTGATGAACGGAC 57.036 30.769 0.00 0.00 0.00 4.79
515 516 7.748683 TCATTTCTTTTAATTGATGAACGGACG 59.251 33.333 0.00 0.00 0.00 4.79
516 517 5.539582 TCTTTTAATTGATGAACGGACGG 57.460 39.130 0.00 0.00 0.00 4.79
517 518 5.239351 TCTTTTAATTGATGAACGGACGGA 58.761 37.500 0.00 0.00 0.00 4.69
518 519 5.350365 TCTTTTAATTGATGAACGGACGGAG 59.650 40.000 0.00 0.00 0.00 4.63
519 520 2.024176 AATTGATGAACGGACGGAGG 57.976 50.000 0.00 0.00 0.00 4.30
520 521 0.902531 ATTGATGAACGGACGGAGGT 59.097 50.000 0.00 0.00 0.00 3.85
521 522 1.548081 TTGATGAACGGACGGAGGTA 58.452 50.000 0.00 0.00 0.00 3.08
522 523 1.100510 TGATGAACGGACGGAGGTAG 58.899 55.000 0.00 0.00 0.00 3.18
523 524 1.101331 GATGAACGGACGGAGGTAGT 58.899 55.000 0.00 0.00 0.00 2.73
524 525 2.292267 GATGAACGGACGGAGGTAGTA 58.708 52.381 0.00 0.00 0.00 1.82
525 526 1.453155 TGAACGGACGGAGGTAGTAC 58.547 55.000 0.00 0.00 0.00 2.73
526 527 1.271325 TGAACGGACGGAGGTAGTACA 60.271 52.381 2.06 0.00 0.00 2.90
527 528 2.019984 GAACGGACGGAGGTAGTACAT 58.980 52.381 2.06 0.00 0.00 2.29
528 529 1.673168 ACGGACGGAGGTAGTACATC 58.327 55.000 6.40 6.40 0.00 3.06
529 530 1.065199 ACGGACGGAGGTAGTACATCA 60.065 52.381 16.21 0.00 29.10 3.07
530 531 1.332997 CGGACGGAGGTAGTACATCAC 59.667 57.143 16.21 7.24 29.10 3.06
531 532 2.372264 GGACGGAGGTAGTACATCACA 58.628 52.381 16.21 0.00 29.10 3.58
532 533 2.756760 GGACGGAGGTAGTACATCACAA 59.243 50.000 16.21 0.00 29.10 3.33
533 534 3.194116 GGACGGAGGTAGTACATCACAAA 59.806 47.826 16.21 0.00 29.10 2.83
534 535 4.142004 GGACGGAGGTAGTACATCACAAAT 60.142 45.833 16.21 0.00 29.10 2.32
535 536 5.068198 GGACGGAGGTAGTACATCACAAATA 59.932 44.000 16.21 0.00 29.10 1.40
536 537 6.145338 ACGGAGGTAGTACATCACAAATAG 57.855 41.667 16.21 2.07 29.10 1.73
537 538 5.889853 ACGGAGGTAGTACATCACAAATAGA 59.110 40.000 16.21 0.00 29.10 1.98
538 539 6.183360 ACGGAGGTAGTACATCACAAATAGAC 60.183 42.308 16.21 0.00 29.10 2.59
539 540 6.207213 GGAGGTAGTACATCACAAATAGACG 58.793 44.000 16.21 0.00 29.10 4.18
540 541 5.589192 AGGTAGTACATCACAAATAGACGC 58.411 41.667 2.06 0.00 0.00 5.19
541 542 5.360144 AGGTAGTACATCACAAATAGACGCT 59.640 40.000 2.06 0.00 0.00 5.07
542 543 5.686397 GGTAGTACATCACAAATAGACGCTC 59.314 44.000 2.06 0.00 0.00 5.03
543 544 4.352039 AGTACATCACAAATAGACGCTCG 58.648 43.478 0.00 0.00 0.00 5.03
544 545 1.927174 ACATCACAAATAGACGCTCGC 59.073 47.619 0.00 0.00 0.00 5.03
545 546 2.196749 CATCACAAATAGACGCTCGCT 58.803 47.619 0.00 0.00 0.00 4.93
546 547 2.363788 TCACAAATAGACGCTCGCTT 57.636 45.000 0.00 0.00 0.00 4.68
547 548 2.259618 TCACAAATAGACGCTCGCTTC 58.740 47.619 0.00 0.00 0.00 3.86
548 549 1.992667 CACAAATAGACGCTCGCTTCA 59.007 47.619 0.00 0.00 0.00 3.02
549 550 2.604914 CACAAATAGACGCTCGCTTCAT 59.395 45.455 0.00 0.00 0.00 2.57
550 551 3.062639 CACAAATAGACGCTCGCTTCATT 59.937 43.478 0.00 0.00 0.00 2.57
551 552 3.684788 ACAAATAGACGCTCGCTTCATTT 59.315 39.130 0.00 0.81 0.00 2.32
552 553 4.154195 ACAAATAGACGCTCGCTTCATTTT 59.846 37.500 0.00 0.00 0.00 1.82
553 554 4.946784 AATAGACGCTCGCTTCATTTTT 57.053 36.364 0.00 0.00 0.00 1.94
578 579 9.587772 TTTTTAATTGAGGAACGAAATGAACAA 57.412 25.926 0.00 0.00 0.00 2.83
579 580 8.795786 TTTAATTGAGGAACGAAATGAACAAG 57.204 30.769 0.00 0.00 0.00 3.16
580 581 6.633500 AATTGAGGAACGAAATGAACAAGA 57.367 33.333 0.00 0.00 0.00 3.02
581 582 5.418310 TTGAGGAACGAAATGAACAAGAC 57.582 39.130 0.00 0.00 0.00 3.01
582 583 4.447290 TGAGGAACGAAATGAACAAGACA 58.553 39.130 0.00 0.00 0.00 3.41
583 584 4.511454 TGAGGAACGAAATGAACAAGACAG 59.489 41.667 0.00 0.00 0.00 3.51
584 585 3.251004 AGGAACGAAATGAACAAGACAGC 59.749 43.478 0.00 0.00 0.00 4.40
585 586 3.555518 GAACGAAATGAACAAGACAGCC 58.444 45.455 0.00 0.00 0.00 4.85
586 587 1.880027 ACGAAATGAACAAGACAGCCC 59.120 47.619 0.00 0.00 0.00 5.19
587 588 2.154462 CGAAATGAACAAGACAGCCCT 58.846 47.619 0.00 0.00 0.00 5.19
588 589 2.095567 CGAAATGAACAAGACAGCCCTG 60.096 50.000 0.00 0.00 0.00 4.45
589 590 2.957402 AATGAACAAGACAGCCCTGA 57.043 45.000 1.69 0.00 0.00 3.86
590 591 2.957402 ATGAACAAGACAGCCCTGAA 57.043 45.000 1.69 0.00 0.00 3.02
591 592 2.727123 TGAACAAGACAGCCCTGAAA 57.273 45.000 1.69 0.00 0.00 2.69
592 593 3.011566 TGAACAAGACAGCCCTGAAAA 57.988 42.857 1.69 0.00 0.00 2.29
593 594 3.360867 TGAACAAGACAGCCCTGAAAAA 58.639 40.909 1.69 0.00 0.00 1.94
651 652 2.099427 GGAACGTTACCAAAGCAACCAA 59.901 45.455 0.00 0.00 0.00 3.67
788 790 1.298157 GAGCACACAAGCATACCGCA 61.298 55.000 0.00 0.00 46.13 5.69
929 932 3.616721 CGCCTACATAGCCGCCCT 61.617 66.667 0.00 0.00 0.00 5.19
1273 1308 5.124776 CACGACCTCTAGAGAAATCTCACTT 59.875 44.000 21.76 0.00 45.21 3.16
1274 1309 6.316640 CACGACCTCTAGAGAAATCTCACTTA 59.683 42.308 21.76 0.00 45.21 2.24
1275 1310 7.012894 CACGACCTCTAGAGAAATCTCACTTAT 59.987 40.741 21.76 0.00 45.21 1.73
1276 1311 8.212312 ACGACCTCTAGAGAAATCTCACTTATA 58.788 37.037 21.76 0.00 45.21 0.98
1329 1377 0.099968 CTTGCTGCAATGCATACGCT 59.900 50.000 16.38 0.00 42.96 5.07
1331 1379 1.298863 GCTGCAATGCATACGCTGG 60.299 57.895 21.59 15.15 38.13 4.85
1336 1393 1.400142 GCAATGCATACGCTGGTGTAA 59.600 47.619 12.56 0.00 39.64 2.41
1340 1397 2.285083 TGCATACGCTGGTGTAAATCC 58.715 47.619 0.00 0.00 39.64 3.01
1377 1434 7.994194 AGCTAGCTGTTTATTTAGTAGTACGT 58.006 34.615 18.57 0.00 0.00 3.57
1378 1435 8.127954 AGCTAGCTGTTTATTTAGTAGTACGTC 58.872 37.037 18.57 0.00 0.00 4.34
1379 1436 8.127954 GCTAGCTGTTTATTTAGTAGTACGTCT 58.872 37.037 7.70 0.00 0.00 4.18
1391 1453 6.956202 AGTAGTACGTCTAGCATATGGTTT 57.044 37.500 13.49 0.00 0.00 3.27
1422 1484 2.094752 GTGTTTAGCCGAATGCCACAAT 60.095 45.455 0.00 0.00 42.71 2.71
1423 1485 2.094803 TGTTTAGCCGAATGCCACAATG 60.095 45.455 0.00 0.00 42.71 2.82
1424 1486 0.455410 TTAGCCGAATGCCACAATGC 59.545 50.000 0.00 0.00 42.71 3.56
1425 1487 0.394216 TAGCCGAATGCCACAATGCT 60.394 50.000 0.00 0.00 42.71 3.79
1426 1488 0.394216 AGCCGAATGCCACAATGCTA 60.394 50.000 0.00 0.00 42.71 3.49
1427 1489 0.455410 GCCGAATGCCACAATGCTAA 59.545 50.000 0.00 0.00 0.00 3.09
1472 1535 8.165239 TCATTTGTGTGCAGTTTAATTACTCT 57.835 30.769 0.00 0.00 0.00 3.24
1473 1536 9.278978 TCATTTGTGTGCAGTTTAATTACTCTA 57.721 29.630 0.00 0.00 0.00 2.43
1474 1537 9.546909 CATTTGTGTGCAGTTTAATTACTCTAG 57.453 33.333 0.00 0.00 0.00 2.43
1477 1540 8.752766 TGTGTGCAGTTTAATTACTCTAGTAC 57.247 34.615 0.00 0.00 0.00 2.73
1498 1561 8.876275 AGTACTACGTTTGTTATTTTGTCTGA 57.124 30.769 0.00 0.00 0.00 3.27
1585 1648 1.939785 CACTCGAGCGCGTGGATAC 60.940 63.158 13.61 0.00 38.98 2.24
1602 1671 1.113517 TACATAGTCTCTGGCCGGGC 61.114 60.000 23.42 23.42 0.00 6.13
1609 1678 3.821636 CTCTGGCCGGGCTGCATAG 62.822 68.421 29.87 17.53 0.00 2.23
1647 1716 2.771089 TGACTAGTAGAACGTCCGTGT 58.229 47.619 3.59 0.00 0.00 4.49
1679 1748 8.621532 ACGGACTACAATGCATATAAATGAAT 57.378 30.769 0.00 0.00 32.14 2.57
1905 1982 1.528309 ACCTCACAACGGGCCTTTG 60.528 57.895 20.12 20.12 0.00 2.77
1959 2036 1.707427 ACATTTCTCACTGGAGCCCTT 59.293 47.619 0.00 0.00 41.13 3.95
2015 2092 2.553028 GCCATGACACCCTCTCTTCAAA 60.553 50.000 0.00 0.00 0.00 2.69
2016 2093 3.754965 CCATGACACCCTCTCTTCAAAA 58.245 45.455 0.00 0.00 0.00 2.44
2022 2099 5.104693 TGACACCCTCTCTTCAAAAACACTA 60.105 40.000 0.00 0.00 0.00 2.74
2084 2161 3.002583 TGCTCCGCCCTGATCACA 61.003 61.111 0.00 0.00 0.00 3.58
2154 2231 3.753319 CCACCCATGATGCCCCCA 61.753 66.667 0.00 0.00 0.00 4.96
2155 2232 2.442643 CACCCATGATGCCCCCAC 60.443 66.667 0.00 0.00 0.00 4.61
2156 2233 3.754472 ACCCATGATGCCCCCACC 61.754 66.667 0.00 0.00 0.00 4.61
2157 2234 4.900704 CCCATGATGCCCCCACCG 62.901 72.222 0.00 0.00 0.00 4.94
2195 2272 3.967467 AGGCAGATCCAATTTCTCCAT 57.033 42.857 0.00 0.00 37.29 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.112606 TCTGTTCGTCCCTGTCCTCT 59.887 55.000 0.00 0.00 0.00 3.69
2 3 1.420430 TTTCTGTTCGTCCCTGTCCT 58.580 50.000 0.00 0.00 0.00 3.85
3 4 2.474410 ATTTCTGTTCGTCCCTGTCC 57.526 50.000 0.00 0.00 0.00 4.02
4 5 6.255887 CACTAATATTTCTGTTCGTCCCTGTC 59.744 42.308 0.00 0.00 0.00 3.51
5 6 6.106673 CACTAATATTTCTGTTCGTCCCTGT 58.893 40.000 0.00 0.00 0.00 4.00
6 7 6.036083 CACACTAATATTTCTGTTCGTCCCTG 59.964 42.308 0.00 0.00 0.00 4.45
7 8 6.106673 CACACTAATATTTCTGTTCGTCCCT 58.893 40.000 0.00 0.00 0.00 4.20
8 9 5.873164 ACACACTAATATTTCTGTTCGTCCC 59.127 40.000 0.00 0.00 0.00 4.46
9 10 6.963049 ACACACTAATATTTCTGTTCGTCC 57.037 37.500 0.00 0.00 0.00 4.79
10 11 7.331193 AGGAACACACTAATATTTCTGTTCGTC 59.669 37.037 14.57 7.52 38.81 4.20
11 12 7.159372 AGGAACACACTAATATTTCTGTTCGT 58.841 34.615 14.57 13.37 38.81 3.85
12 13 7.596749 AGGAACACACTAATATTTCTGTTCG 57.403 36.000 14.57 0.00 38.81 3.95
16 17 9.329913 CGAAAAAGGAACACACTAATATTTCTG 57.670 33.333 0.00 0.00 0.00 3.02
17 18 9.063615 ACGAAAAAGGAACACACTAATATTTCT 57.936 29.630 0.00 0.00 0.00 2.52
18 19 9.113876 CACGAAAAAGGAACACACTAATATTTC 57.886 33.333 0.00 0.00 0.00 2.17
19 20 8.626526 ACACGAAAAAGGAACACACTAATATTT 58.373 29.630 0.00 0.00 0.00 1.40
20 21 8.161699 ACACGAAAAAGGAACACACTAATATT 57.838 30.769 0.00 0.00 0.00 1.28
21 22 7.739498 ACACGAAAAAGGAACACACTAATAT 57.261 32.000 0.00 0.00 0.00 1.28
22 23 7.556733 AACACGAAAAAGGAACACACTAATA 57.443 32.000 0.00 0.00 0.00 0.98
23 24 6.445357 AACACGAAAAAGGAACACACTAAT 57.555 33.333 0.00 0.00 0.00 1.73
24 25 5.883503 AACACGAAAAAGGAACACACTAA 57.116 34.783 0.00 0.00 0.00 2.24
25 26 5.632959 CAAACACGAAAAAGGAACACACTA 58.367 37.500 0.00 0.00 0.00 2.74
26 27 4.481463 CAAACACGAAAAAGGAACACACT 58.519 39.130 0.00 0.00 0.00 3.55
27 28 3.060230 GCAAACACGAAAAAGGAACACAC 59.940 43.478 0.00 0.00 0.00 3.82
28 29 3.057174 AGCAAACACGAAAAAGGAACACA 60.057 39.130 0.00 0.00 0.00 3.72
29 30 3.507786 AGCAAACACGAAAAAGGAACAC 58.492 40.909 0.00 0.00 0.00 3.32
30 31 3.859411 AGCAAACACGAAAAAGGAACA 57.141 38.095 0.00 0.00 0.00 3.18
31 32 6.474102 TCATTTAGCAAACACGAAAAAGGAAC 59.526 34.615 0.00 0.00 0.00 3.62
32 33 6.474102 GTCATTTAGCAAACACGAAAAAGGAA 59.526 34.615 0.00 0.00 0.00 3.36
33 34 5.974751 GTCATTTAGCAAACACGAAAAAGGA 59.025 36.000 0.00 0.00 0.00 3.36
34 35 5.746245 TGTCATTTAGCAAACACGAAAAAGG 59.254 36.000 0.00 0.00 0.00 3.11
35 36 6.074888 CCTGTCATTTAGCAAACACGAAAAAG 60.075 38.462 0.00 0.00 0.00 2.27
36 37 5.746245 CCTGTCATTTAGCAAACACGAAAAA 59.254 36.000 0.00 0.00 0.00 1.94
37 38 5.163602 ACCTGTCATTTAGCAAACACGAAAA 60.164 36.000 0.00 0.00 0.00 2.29
38 39 4.336993 ACCTGTCATTTAGCAAACACGAAA 59.663 37.500 0.00 0.00 0.00 3.46
39 40 3.880490 ACCTGTCATTTAGCAAACACGAA 59.120 39.130 0.00 0.00 0.00 3.85
40 41 3.472652 ACCTGTCATTTAGCAAACACGA 58.527 40.909 0.00 0.00 0.00 4.35
41 42 3.896648 ACCTGTCATTTAGCAAACACG 57.103 42.857 0.00 0.00 0.00 4.49
42 43 4.760204 AGGTACCTGTCATTTAGCAAACAC 59.240 41.667 15.42 0.00 0.00 3.32
43 44 4.759693 CAGGTACCTGTCATTTAGCAAACA 59.240 41.667 30.57 0.00 39.10 2.83
44 45 5.001232 TCAGGTACCTGTCATTTAGCAAAC 58.999 41.667 35.34 0.00 43.96 2.93
45 46 5.235850 TCAGGTACCTGTCATTTAGCAAA 57.764 39.130 35.34 13.70 43.96 3.68
46 47 4.901197 TCAGGTACCTGTCATTTAGCAA 57.099 40.909 35.34 14.20 43.96 3.91
47 48 4.901197 TTCAGGTACCTGTCATTTAGCA 57.099 40.909 35.34 14.90 43.96 3.49
48 49 6.759497 AAATTCAGGTACCTGTCATTTAGC 57.241 37.500 35.34 0.00 43.96 3.09
71 72 7.857734 TTTGACATGACTGAGACTACAAAAA 57.142 32.000 0.00 0.00 0.00 1.94
72 73 7.095649 CGATTTGACATGACTGAGACTACAAAA 60.096 37.037 0.00 0.00 0.00 2.44
73 74 6.366061 CGATTTGACATGACTGAGACTACAAA 59.634 38.462 0.00 0.00 0.00 2.83
74 75 5.863935 CGATTTGACATGACTGAGACTACAA 59.136 40.000 0.00 0.00 0.00 2.41
75 76 5.183140 TCGATTTGACATGACTGAGACTACA 59.817 40.000 0.00 0.00 0.00 2.74
76 77 5.641709 TCGATTTGACATGACTGAGACTAC 58.358 41.667 0.00 0.00 0.00 2.73
77 78 5.897377 TCGATTTGACATGACTGAGACTA 57.103 39.130 0.00 0.00 0.00 2.59
78 79 4.790765 TCGATTTGACATGACTGAGACT 57.209 40.909 0.00 0.00 0.00 3.24
79 80 4.201532 CGTTCGATTTGACATGACTGAGAC 60.202 45.833 0.00 0.00 0.00 3.36
80 81 3.920412 CGTTCGATTTGACATGACTGAGA 59.080 43.478 0.00 0.00 0.00 3.27
81 82 3.920412 TCGTTCGATTTGACATGACTGAG 59.080 43.478 0.00 0.00 0.00 3.35
82 83 3.908213 TCGTTCGATTTGACATGACTGA 58.092 40.909 0.00 0.00 0.00 3.41
83 84 3.675225 ACTCGTTCGATTTGACATGACTG 59.325 43.478 0.00 0.00 0.00 3.51
84 85 3.914312 ACTCGTTCGATTTGACATGACT 58.086 40.909 0.00 0.00 0.00 3.41
85 86 3.060895 GGACTCGTTCGATTTGACATGAC 59.939 47.826 0.00 0.00 0.00 3.06
86 87 3.250744 GGACTCGTTCGATTTGACATGA 58.749 45.455 0.00 0.00 0.00 3.07
87 88 2.028045 CGGACTCGTTCGATTTGACATG 59.972 50.000 0.00 0.00 0.00 3.21
88 89 2.094906 TCGGACTCGTTCGATTTGACAT 60.095 45.455 0.00 0.00 37.69 3.06
89 90 1.267533 TCGGACTCGTTCGATTTGACA 59.732 47.619 0.00 0.00 37.69 3.58
90 91 1.973138 TCGGACTCGTTCGATTTGAC 58.027 50.000 0.00 0.00 37.69 3.18
91 92 2.592194 CTTCGGACTCGTTCGATTTGA 58.408 47.619 0.70 0.00 35.25 2.69
92 93 1.654105 CCTTCGGACTCGTTCGATTTG 59.346 52.381 0.70 0.00 35.25 2.32
93 94 1.992170 CCTTCGGACTCGTTCGATTT 58.008 50.000 0.70 0.00 35.25 2.17
94 95 0.458025 GCCTTCGGACTCGTTCGATT 60.458 55.000 0.70 0.00 35.25 3.34
95 96 1.139095 GCCTTCGGACTCGTTCGAT 59.861 57.895 0.70 0.00 35.25 3.59
96 97 2.564975 GCCTTCGGACTCGTTCGA 59.435 61.111 0.00 0.00 37.69 3.71
97 98 2.874780 CGCCTTCGGACTCGTTCG 60.875 66.667 0.00 0.00 37.69 3.95
120 121 4.752594 TACCCAGCCCCTCACCCC 62.753 72.222 0.00 0.00 0.00 4.95
121 122 2.612746 TTACCCAGCCCCTCACCC 60.613 66.667 0.00 0.00 0.00 4.61
122 123 2.680370 CCTTACCCAGCCCCTCACC 61.680 68.421 0.00 0.00 0.00 4.02
123 124 1.615424 TCCTTACCCAGCCCCTCAC 60.615 63.158 0.00 0.00 0.00 3.51
124 125 1.306997 CTCCTTACCCAGCCCCTCA 60.307 63.158 0.00 0.00 0.00 3.86
125 126 2.747443 GCTCCTTACCCAGCCCCTC 61.747 68.421 0.00 0.00 0.00 4.30
126 127 2.692741 GCTCCTTACCCAGCCCCT 60.693 66.667 0.00 0.00 0.00 4.79
127 128 4.176752 CGCTCCTTACCCAGCCCC 62.177 72.222 0.00 0.00 31.37 5.80
128 129 4.176752 CCGCTCCTTACCCAGCCC 62.177 72.222 0.00 0.00 31.37 5.19
129 130 2.029307 CTACCGCTCCTTACCCAGCC 62.029 65.000 0.00 0.00 31.37 4.85
130 131 1.442148 CTACCGCTCCTTACCCAGC 59.558 63.158 0.00 0.00 0.00 4.85
131 132 1.327690 TGCTACCGCTCCTTACCCAG 61.328 60.000 0.00 0.00 36.97 4.45
132 133 1.305465 TGCTACCGCTCCTTACCCA 60.305 57.895 0.00 0.00 36.97 4.51
133 134 1.143401 GTGCTACCGCTCCTTACCC 59.857 63.158 0.00 0.00 36.97 3.69
134 135 0.464452 ATGTGCTACCGCTCCTTACC 59.536 55.000 0.00 0.00 36.97 2.85
135 136 1.409427 AGATGTGCTACCGCTCCTTAC 59.591 52.381 0.00 0.00 36.97 2.34
136 137 1.776662 AGATGTGCTACCGCTCCTTA 58.223 50.000 0.00 0.00 36.97 2.69
137 138 1.683917 CTAGATGTGCTACCGCTCCTT 59.316 52.381 0.00 0.00 36.97 3.36
138 139 1.133761 TCTAGATGTGCTACCGCTCCT 60.134 52.381 0.00 0.00 36.97 3.69
139 140 1.319541 TCTAGATGTGCTACCGCTCC 58.680 55.000 0.00 0.00 36.97 4.70
140 141 2.352225 CCATCTAGATGTGCTACCGCTC 60.352 54.545 27.03 0.00 37.11 5.03
141 142 1.615883 CCATCTAGATGTGCTACCGCT 59.384 52.381 27.03 0.00 37.11 5.52
142 143 1.613925 TCCATCTAGATGTGCTACCGC 59.386 52.381 27.03 0.00 37.11 5.68
143 144 3.507622 TCATCCATCTAGATGTGCTACCG 59.492 47.826 27.03 12.82 43.46 4.02
144 145 5.417811 CATCATCCATCTAGATGTGCTACC 58.582 45.833 27.03 0.00 43.46 3.18
151 152 8.075761 TCCAATAGACATCATCCATCTAGATG 57.924 38.462 23.53 23.53 44.21 2.90
152 153 8.857374 ATCCAATAGACATCATCCATCTAGAT 57.143 34.615 0.00 0.00 0.00 1.98
153 154 8.676397 AATCCAATAGACATCATCCATCTAGA 57.324 34.615 0.00 0.00 0.00 2.43
154 155 9.736414 AAAATCCAATAGACATCATCCATCTAG 57.264 33.333 0.00 0.00 0.00 2.43
155 156 9.511272 CAAAATCCAATAGACATCATCCATCTA 57.489 33.333 0.00 0.00 0.00 1.98
156 157 8.222637 TCAAAATCCAATAGACATCATCCATCT 58.777 33.333 0.00 0.00 0.00 2.90
157 158 8.400184 TCAAAATCCAATAGACATCATCCATC 57.600 34.615 0.00 0.00 0.00 3.51
158 159 8.636213 GTTCAAAATCCAATAGACATCATCCAT 58.364 33.333 0.00 0.00 0.00 3.41
159 160 7.201723 CGTTCAAAATCCAATAGACATCATCCA 60.202 37.037 0.00 0.00 0.00 3.41
160 161 7.134815 CGTTCAAAATCCAATAGACATCATCC 58.865 38.462 0.00 0.00 0.00 3.51
161 162 7.012327 TCCGTTCAAAATCCAATAGACATCATC 59.988 37.037 0.00 0.00 0.00 2.92
162 163 6.828273 TCCGTTCAAAATCCAATAGACATCAT 59.172 34.615 0.00 0.00 0.00 2.45
163 164 6.093495 GTCCGTTCAAAATCCAATAGACATCA 59.907 38.462 0.00 0.00 0.00 3.07
164 165 6.487103 GTCCGTTCAAAATCCAATAGACATC 58.513 40.000 0.00 0.00 0.00 3.06
165 166 5.064707 CGTCCGTTCAAAATCCAATAGACAT 59.935 40.000 0.00 0.00 0.00 3.06
166 167 4.390603 CGTCCGTTCAAAATCCAATAGACA 59.609 41.667 0.00 0.00 0.00 3.41
167 168 4.201783 CCGTCCGTTCAAAATCCAATAGAC 60.202 45.833 0.00 0.00 0.00 2.59
168 169 3.936453 CCGTCCGTTCAAAATCCAATAGA 59.064 43.478 0.00 0.00 0.00 1.98
169 170 3.687698 ACCGTCCGTTCAAAATCCAATAG 59.312 43.478 0.00 0.00 0.00 1.73
170 171 3.677190 ACCGTCCGTTCAAAATCCAATA 58.323 40.909 0.00 0.00 0.00 1.90
171 172 2.510613 ACCGTCCGTTCAAAATCCAAT 58.489 42.857 0.00 0.00 0.00 3.16
172 173 1.970092 ACCGTCCGTTCAAAATCCAA 58.030 45.000 0.00 0.00 0.00 3.53
173 174 1.604755 CAACCGTCCGTTCAAAATCCA 59.395 47.619 0.00 0.00 29.93 3.41
174 175 1.874872 TCAACCGTCCGTTCAAAATCC 59.125 47.619 0.00 0.00 29.93 3.01
175 176 2.803956 TCTCAACCGTCCGTTCAAAATC 59.196 45.455 0.00 0.00 29.93 2.17
176 177 2.841215 TCTCAACCGTCCGTTCAAAAT 58.159 42.857 0.00 0.00 29.93 1.82
177 178 2.312722 TCTCAACCGTCCGTTCAAAA 57.687 45.000 0.00 0.00 29.93 2.44
178 179 2.036733 AGATCTCAACCGTCCGTTCAAA 59.963 45.455 0.00 0.00 29.93 2.69
179 180 1.616865 AGATCTCAACCGTCCGTTCAA 59.383 47.619 0.00 0.00 29.93 2.69
180 181 1.201647 GAGATCTCAACCGTCCGTTCA 59.798 52.381 18.11 0.00 29.93 3.18
181 182 1.794437 CGAGATCTCAACCGTCCGTTC 60.794 57.143 22.31 0.00 29.93 3.95
182 183 0.170561 CGAGATCTCAACCGTCCGTT 59.829 55.000 22.31 0.00 33.90 4.44
183 184 0.675837 TCGAGATCTCAACCGTCCGT 60.676 55.000 22.31 0.00 0.00 4.69
184 185 0.663688 ATCGAGATCTCAACCGTCCG 59.336 55.000 22.31 6.69 0.00 4.79
185 186 1.676529 TGATCGAGATCTCAACCGTCC 59.323 52.381 22.31 6.33 38.60 4.79
186 187 2.614520 TCTGATCGAGATCTCAACCGTC 59.385 50.000 22.31 11.86 38.60 4.79
187 188 2.644676 TCTGATCGAGATCTCAACCGT 58.355 47.619 22.31 3.06 38.60 4.83
188 189 3.699779 TTCTGATCGAGATCTCAACCG 57.300 47.619 22.31 9.26 38.60 4.44
189 190 6.019156 GTCAATTTCTGATCGAGATCTCAACC 60.019 42.308 22.31 10.31 38.60 3.77
190 191 6.756074 AGTCAATTTCTGATCGAGATCTCAAC 59.244 38.462 22.31 12.52 38.60 3.18
191 192 6.755607 CAGTCAATTTCTGATCGAGATCTCAA 59.244 38.462 22.31 4.37 38.60 3.02
192 193 6.271566 CAGTCAATTTCTGATCGAGATCTCA 58.728 40.000 22.31 10.04 38.60 3.27
193 194 5.691305 CCAGTCAATTTCTGATCGAGATCTC 59.309 44.000 13.05 13.05 38.60 2.75
194 195 5.599732 CCAGTCAATTTCTGATCGAGATCT 58.400 41.667 13.47 0.00 38.60 2.75
195 196 4.210955 GCCAGTCAATTTCTGATCGAGATC 59.789 45.833 6.16 6.16 36.14 2.75
196 197 4.125703 GCCAGTCAATTTCTGATCGAGAT 58.874 43.478 8.47 0.00 36.14 2.75
197 198 3.525537 GCCAGTCAATTTCTGATCGAGA 58.474 45.455 8.47 0.00 36.14 4.04
198 199 2.283617 CGCCAGTCAATTTCTGATCGAG 59.716 50.000 8.47 0.00 36.14 4.04
199 200 2.270923 CGCCAGTCAATTTCTGATCGA 58.729 47.619 8.47 0.00 36.14 3.59
200 201 1.328680 CCGCCAGTCAATTTCTGATCG 59.671 52.381 8.47 10.12 36.14 3.69
201 202 2.096496 CACCGCCAGTCAATTTCTGATC 59.904 50.000 8.47 0.00 36.14 2.92
202 203 2.086869 CACCGCCAGTCAATTTCTGAT 58.913 47.619 8.47 0.00 36.14 2.90
203 204 1.071542 TCACCGCCAGTCAATTTCTGA 59.928 47.619 8.47 0.00 35.20 3.27
204 205 1.522668 TCACCGCCAGTCAATTTCTG 58.477 50.000 1.62 1.62 0.00 3.02
205 206 2.270352 TTCACCGCCAGTCAATTTCT 57.730 45.000 0.00 0.00 0.00 2.52
206 207 3.363341 TTTTCACCGCCAGTCAATTTC 57.637 42.857 0.00 0.00 0.00 2.17
207 208 4.335400 AATTTTCACCGCCAGTCAATTT 57.665 36.364 0.00 0.00 0.00 1.82
208 209 4.306600 GAAATTTTCACCGCCAGTCAATT 58.693 39.130 4.25 0.00 0.00 2.32
209 210 3.306019 GGAAATTTTCACCGCCAGTCAAT 60.306 43.478 11.09 0.00 0.00 2.57
210 211 2.035321 GGAAATTTTCACCGCCAGTCAA 59.965 45.455 11.09 0.00 0.00 3.18
211 212 1.611491 GGAAATTTTCACCGCCAGTCA 59.389 47.619 11.09 0.00 0.00 3.41
212 213 1.611491 TGGAAATTTTCACCGCCAGTC 59.389 47.619 11.09 0.00 0.00 3.51
213 214 1.698506 TGGAAATTTTCACCGCCAGT 58.301 45.000 11.09 0.00 0.00 4.00
214 215 2.035832 ACTTGGAAATTTTCACCGCCAG 59.964 45.455 11.09 0.00 0.00 4.85
215 216 2.035632 ACTTGGAAATTTTCACCGCCA 58.964 42.857 11.09 0.00 0.00 5.69
216 217 2.812358 ACTTGGAAATTTTCACCGCC 57.188 45.000 11.09 0.00 0.00 6.13
217 218 4.499037 AGTACTTGGAAATTTTCACCGC 57.501 40.909 11.09 0.00 0.00 5.68
218 219 5.704053 AGGTAGTACTTGGAAATTTTCACCG 59.296 40.000 0.00 0.00 0.00 4.94
219 220 6.150641 GGAGGTAGTACTTGGAAATTTTCACC 59.849 42.308 0.00 7.08 0.00 4.02
220 221 6.128363 CGGAGGTAGTACTTGGAAATTTTCAC 60.128 42.308 0.00 0.71 0.00 3.18
221 222 5.935789 CGGAGGTAGTACTTGGAAATTTTCA 59.064 40.000 0.00 0.00 0.00 2.69
222 223 5.936372 ACGGAGGTAGTACTTGGAAATTTTC 59.064 40.000 0.00 0.24 0.00 2.29
223 224 5.872963 ACGGAGGTAGTACTTGGAAATTTT 58.127 37.500 0.00 0.00 0.00 1.82
224 225 5.485620 GACGGAGGTAGTACTTGGAAATTT 58.514 41.667 0.00 0.00 0.00 1.82
225 226 4.081254 GGACGGAGGTAGTACTTGGAAATT 60.081 45.833 0.00 0.00 0.00 1.82
226 227 3.450096 GGACGGAGGTAGTACTTGGAAAT 59.550 47.826 0.00 0.00 0.00 2.17
227 228 2.827921 GGACGGAGGTAGTACTTGGAAA 59.172 50.000 0.00 0.00 0.00 3.13
228 229 2.450476 GGACGGAGGTAGTACTTGGAA 58.550 52.381 0.00 0.00 0.00 3.53
229 230 1.679944 CGGACGGAGGTAGTACTTGGA 60.680 57.143 0.00 0.00 0.00 3.53
230 231 0.737219 CGGACGGAGGTAGTACTTGG 59.263 60.000 0.00 0.00 0.00 3.61
231 232 0.737219 CCGGACGGAGGTAGTACTTG 59.263 60.000 4.40 0.00 37.50 3.16
232 233 0.394899 CCCGGACGGAGGTAGTACTT 60.395 60.000 13.13 0.00 37.50 2.24
233 234 1.225704 CCCGGACGGAGGTAGTACT 59.774 63.158 13.13 0.00 37.50 2.73
234 235 0.681243 AACCCGGACGGAGGTAGTAC 60.681 60.000 13.13 0.00 34.45 2.73
235 236 0.039618 AAACCCGGACGGAGGTAGTA 59.960 55.000 13.13 0.00 34.45 1.82
236 237 0.039618 TAAACCCGGACGGAGGTAGT 59.960 55.000 13.13 0.00 34.45 2.73
237 238 1.406903 ATAAACCCGGACGGAGGTAG 58.593 55.000 13.13 0.00 34.45 3.18
238 239 1.864669 AATAAACCCGGACGGAGGTA 58.135 50.000 13.13 1.24 34.45 3.08
239 240 1.758862 CTAATAAACCCGGACGGAGGT 59.241 52.381 13.13 0.00 38.27 3.85
240 241 1.758862 ACTAATAAACCCGGACGGAGG 59.241 52.381 13.13 0.00 37.50 4.30
241 242 3.131755 AGAACTAATAAACCCGGACGGAG 59.868 47.826 13.13 5.04 37.50 4.63
242 243 3.099141 AGAACTAATAAACCCGGACGGA 58.901 45.455 13.13 0.00 37.50 4.69
243 244 3.451526 GAGAACTAATAAACCCGGACGG 58.548 50.000 0.73 3.25 37.81 4.79
244 245 3.131755 AGGAGAACTAATAAACCCGGACG 59.868 47.826 0.73 0.00 0.00 4.79
245 246 4.750021 AGGAGAACTAATAAACCCGGAC 57.250 45.455 0.73 0.00 0.00 4.79
246 247 4.533311 ACAAGGAGAACTAATAAACCCGGA 59.467 41.667 0.73 0.00 0.00 5.14
247 248 4.840271 ACAAGGAGAACTAATAAACCCGG 58.160 43.478 0.00 0.00 0.00 5.73
248 249 8.502105 AAATACAAGGAGAACTAATAAACCCG 57.498 34.615 0.00 0.00 0.00 5.28
336 337 9.942850 TTCATACTTGATAGTGACTTTCAATGA 57.057 29.630 16.72 14.68 32.77 2.57
339 340 9.942850 TGATTCATACTTGATAGTGACTTTCAA 57.057 29.630 15.78 15.78 35.78 2.69
340 341 9.942850 TTGATTCATACTTGATAGTGACTTTCA 57.057 29.630 1.50 1.50 35.78 2.69
343 344 9.725019 TGTTTGATTCATACTTGATAGTGACTT 57.275 29.630 8.42 0.00 35.78 3.01
344 345 9.725019 TTGTTTGATTCATACTTGATAGTGACT 57.275 29.630 8.42 0.00 35.78 3.41
405 406 9.739276 TGTCCAACTTTAGTGATAGATTTGATT 57.261 29.630 0.00 0.00 0.00 2.57
406 407 9.167311 GTGTCCAACTTTAGTGATAGATTTGAT 57.833 33.333 0.00 0.00 0.00 2.57
407 408 8.154203 TGTGTCCAACTTTAGTGATAGATTTGA 58.846 33.333 0.00 0.00 0.00 2.69
408 409 8.322906 TGTGTCCAACTTTAGTGATAGATTTG 57.677 34.615 0.00 0.00 0.00 2.32
409 410 8.918202 TTGTGTCCAACTTTAGTGATAGATTT 57.082 30.769 0.00 0.00 0.00 2.17
410 411 8.918202 TTTGTGTCCAACTTTAGTGATAGATT 57.082 30.769 0.00 0.00 0.00 2.40
411 412 8.918202 TTTTGTGTCCAACTTTAGTGATAGAT 57.082 30.769 0.00 0.00 0.00 1.98
412 413 8.918202 ATTTTGTGTCCAACTTTAGTGATAGA 57.082 30.769 0.00 0.00 0.00 1.98
414 415 9.562408 TGTATTTTGTGTCCAACTTTAGTGATA 57.438 29.630 0.00 0.00 0.00 2.15
415 416 8.458573 TGTATTTTGTGTCCAACTTTAGTGAT 57.541 30.769 0.00 0.00 0.00 3.06
416 417 7.867305 TGTATTTTGTGTCCAACTTTAGTGA 57.133 32.000 0.00 0.00 0.00 3.41
417 418 8.918961 TTTGTATTTTGTGTCCAACTTTAGTG 57.081 30.769 0.00 0.00 0.00 2.74
418 419 8.194769 CCTTTGTATTTTGTGTCCAACTTTAGT 58.805 33.333 0.00 0.00 0.00 2.24
419 420 7.651704 CCCTTTGTATTTTGTGTCCAACTTTAG 59.348 37.037 0.00 0.00 0.00 1.85
420 421 7.418025 CCCCTTTGTATTTTGTGTCCAACTTTA 60.418 37.037 0.00 0.00 0.00 1.85
421 422 6.345298 CCCTTTGTATTTTGTGTCCAACTTT 58.655 36.000 0.00 0.00 0.00 2.66
422 423 5.163353 CCCCTTTGTATTTTGTGTCCAACTT 60.163 40.000 0.00 0.00 0.00 2.66
423 424 4.343814 CCCCTTTGTATTTTGTGTCCAACT 59.656 41.667 0.00 0.00 0.00 3.16
424 425 4.342665 TCCCCTTTGTATTTTGTGTCCAAC 59.657 41.667 0.00 0.00 0.00 3.77
425 426 4.342665 GTCCCCTTTGTATTTTGTGTCCAA 59.657 41.667 0.00 0.00 0.00 3.53
426 427 3.892588 GTCCCCTTTGTATTTTGTGTCCA 59.107 43.478 0.00 0.00 0.00 4.02
427 428 3.257375 GGTCCCCTTTGTATTTTGTGTCC 59.743 47.826 0.00 0.00 0.00 4.02
428 429 3.892588 TGGTCCCCTTTGTATTTTGTGTC 59.107 43.478 0.00 0.00 0.00 3.67
429 430 3.917300 TGGTCCCCTTTGTATTTTGTGT 58.083 40.909 0.00 0.00 0.00 3.72
430 431 4.946478 TTGGTCCCCTTTGTATTTTGTG 57.054 40.909 0.00 0.00 0.00 3.33
431 432 7.446769 GTTTATTGGTCCCCTTTGTATTTTGT 58.553 34.615 0.00 0.00 0.00 2.83
432 433 6.876789 GGTTTATTGGTCCCCTTTGTATTTTG 59.123 38.462 0.00 0.00 0.00 2.44
433 434 6.559157 TGGTTTATTGGTCCCCTTTGTATTTT 59.441 34.615 0.00 0.00 0.00 1.82
434 435 6.085416 TGGTTTATTGGTCCCCTTTGTATTT 58.915 36.000 0.00 0.00 0.00 1.40
435 436 5.656420 TGGTTTATTGGTCCCCTTTGTATT 58.344 37.500 0.00 0.00 0.00 1.89
436 437 5.269189 CTGGTTTATTGGTCCCCTTTGTAT 58.731 41.667 0.00 0.00 0.00 2.29
437 438 4.509482 CCTGGTTTATTGGTCCCCTTTGTA 60.509 45.833 0.00 0.00 0.00 2.41
438 439 3.506398 CTGGTTTATTGGTCCCCTTTGT 58.494 45.455 0.00 0.00 0.00 2.83
439 440 2.831526 CCTGGTTTATTGGTCCCCTTTG 59.168 50.000 0.00 0.00 0.00 2.77
440 441 2.725227 TCCTGGTTTATTGGTCCCCTTT 59.275 45.455 0.00 0.00 0.00 3.11
441 442 2.042569 GTCCTGGTTTATTGGTCCCCTT 59.957 50.000 0.00 0.00 0.00 3.95
442 443 1.639108 GTCCTGGTTTATTGGTCCCCT 59.361 52.381 0.00 0.00 0.00 4.79
443 444 1.680860 CGTCCTGGTTTATTGGTCCCC 60.681 57.143 0.00 0.00 0.00 4.81
444 445 1.279846 TCGTCCTGGTTTATTGGTCCC 59.720 52.381 0.00 0.00 0.00 4.46
445 446 2.773993 TCGTCCTGGTTTATTGGTCC 57.226 50.000 0.00 0.00 0.00 4.46
446 447 4.070009 ACTTTCGTCCTGGTTTATTGGTC 58.930 43.478 0.00 0.00 0.00 4.02
447 448 4.094830 ACTTTCGTCCTGGTTTATTGGT 57.905 40.909 0.00 0.00 0.00 3.67
448 449 5.243207 ACTACTTTCGTCCTGGTTTATTGG 58.757 41.667 0.00 0.00 0.00 3.16
449 450 6.034256 CGTACTACTTTCGTCCTGGTTTATTG 59.966 42.308 0.00 0.00 0.00 1.90
450 451 6.095377 CGTACTACTTTCGTCCTGGTTTATT 58.905 40.000 0.00 0.00 0.00 1.40
451 452 5.183904 ACGTACTACTTTCGTCCTGGTTTAT 59.816 40.000 0.00 0.00 32.26 1.40
452 453 4.518970 ACGTACTACTTTCGTCCTGGTTTA 59.481 41.667 0.00 0.00 32.26 2.01
453 454 3.319122 ACGTACTACTTTCGTCCTGGTTT 59.681 43.478 0.00 0.00 32.26 3.27
454 455 2.887152 ACGTACTACTTTCGTCCTGGTT 59.113 45.455 0.00 0.00 32.26 3.67
455 456 2.508526 ACGTACTACTTTCGTCCTGGT 58.491 47.619 0.00 0.00 32.26 4.00
456 457 3.565905 AACGTACTACTTTCGTCCTGG 57.434 47.619 0.00 0.00 36.80 4.45
457 458 5.034554 TGTAACGTACTACTTTCGTCCTG 57.965 43.478 0.00 0.00 36.80 3.86
458 459 5.689383 TTGTAACGTACTACTTTCGTCCT 57.311 39.130 0.00 0.00 36.80 3.85
459 460 6.934561 ATTTGTAACGTACTACTTTCGTCC 57.065 37.500 0.00 0.00 36.80 4.79
460 461 8.780482 GTCTATTTGTAACGTACTACTTTCGTC 58.220 37.037 0.00 0.00 36.80 4.20
461 462 7.478667 CGTCTATTTGTAACGTACTACTTTCGT 59.521 37.037 0.00 0.00 39.49 3.85
462 463 7.510592 GCGTCTATTTGTAACGTACTACTTTCG 60.511 40.741 0.00 0.00 38.60 3.46
463 464 7.483059 AGCGTCTATTTGTAACGTACTACTTTC 59.517 37.037 0.00 0.00 38.60 2.62
464 465 7.308435 AGCGTCTATTTGTAACGTACTACTTT 58.692 34.615 0.00 0.00 38.60 2.66
465 466 6.846350 AGCGTCTATTTGTAACGTACTACTT 58.154 36.000 0.00 0.00 38.60 2.24
466 467 6.092670 TGAGCGTCTATTTGTAACGTACTACT 59.907 38.462 0.00 0.00 38.60 2.57
467 468 6.250819 TGAGCGTCTATTTGTAACGTACTAC 58.749 40.000 0.00 0.00 38.60 2.73
468 469 6.421377 TGAGCGTCTATTTGTAACGTACTA 57.579 37.500 0.00 0.00 38.60 1.82
469 470 5.300969 TGAGCGTCTATTTGTAACGTACT 57.699 39.130 0.00 0.00 38.60 2.73
470 471 6.564854 AATGAGCGTCTATTTGTAACGTAC 57.435 37.500 0.00 0.00 38.60 3.67
471 472 7.031372 AGAAATGAGCGTCTATTTGTAACGTA 58.969 34.615 0.00 0.00 38.60 3.57
472 473 5.867716 AGAAATGAGCGTCTATTTGTAACGT 59.132 36.000 0.00 0.00 38.60 3.99
473 474 6.332504 AGAAATGAGCGTCTATTTGTAACG 57.667 37.500 0.00 0.00 39.33 3.18
474 475 8.950403 AAAAGAAATGAGCGTCTATTTGTAAC 57.050 30.769 0.00 0.00 0.00 2.50
481 482 9.941664 CATCAATTAAAAGAAATGAGCGTCTAT 57.058 29.630 0.00 0.00 0.00 1.98
482 483 9.161629 TCATCAATTAAAAGAAATGAGCGTCTA 57.838 29.630 0.00 0.00 0.00 2.59
483 484 8.044060 TCATCAATTAAAAGAAATGAGCGTCT 57.956 30.769 0.00 0.00 0.00 4.18
484 485 8.578769 GTTCATCAATTAAAAGAAATGAGCGTC 58.421 33.333 0.00 0.00 0.00 5.19
485 486 7.271223 CGTTCATCAATTAAAAGAAATGAGCGT 59.729 33.333 10.06 0.00 40.55 5.07
486 487 7.253420 CCGTTCATCAATTAAAAGAAATGAGCG 60.253 37.037 10.95 10.95 43.12 5.03
487 488 7.754924 TCCGTTCATCAATTAAAAGAAATGAGC 59.245 33.333 0.00 0.00 0.00 4.26
488 489 9.065871 GTCCGTTCATCAATTAAAAGAAATGAG 57.934 33.333 0.00 0.00 0.00 2.90
489 490 7.748683 CGTCCGTTCATCAATTAAAAGAAATGA 59.251 33.333 0.00 0.00 0.00 2.57
490 491 7.008266 CCGTCCGTTCATCAATTAAAAGAAATG 59.992 37.037 0.00 0.00 0.00 2.32
491 492 7.027161 CCGTCCGTTCATCAATTAAAAGAAAT 58.973 34.615 0.00 0.00 0.00 2.17
492 493 6.205076 TCCGTCCGTTCATCAATTAAAAGAAA 59.795 34.615 0.00 0.00 0.00 2.52
493 494 5.701750 TCCGTCCGTTCATCAATTAAAAGAA 59.298 36.000 0.00 0.00 0.00 2.52
494 495 5.239351 TCCGTCCGTTCATCAATTAAAAGA 58.761 37.500 0.00 0.00 0.00 2.52
495 496 5.447279 CCTCCGTCCGTTCATCAATTAAAAG 60.447 44.000 0.00 0.00 0.00 2.27
496 497 4.393680 CCTCCGTCCGTTCATCAATTAAAA 59.606 41.667 0.00 0.00 0.00 1.52
497 498 3.936453 CCTCCGTCCGTTCATCAATTAAA 59.064 43.478 0.00 0.00 0.00 1.52
498 499 3.055675 ACCTCCGTCCGTTCATCAATTAA 60.056 43.478 0.00 0.00 0.00 1.40
499 500 2.498481 ACCTCCGTCCGTTCATCAATTA 59.502 45.455 0.00 0.00 0.00 1.40
500 501 1.278127 ACCTCCGTCCGTTCATCAATT 59.722 47.619 0.00 0.00 0.00 2.32
501 502 0.902531 ACCTCCGTCCGTTCATCAAT 59.097 50.000 0.00 0.00 0.00 2.57
502 503 1.475280 CTACCTCCGTCCGTTCATCAA 59.525 52.381 0.00 0.00 0.00 2.57
503 504 1.100510 CTACCTCCGTCCGTTCATCA 58.899 55.000 0.00 0.00 0.00 3.07
504 505 1.101331 ACTACCTCCGTCCGTTCATC 58.899 55.000 0.00 0.00 0.00 2.92
505 506 2.019984 GTACTACCTCCGTCCGTTCAT 58.980 52.381 0.00 0.00 0.00 2.57
506 507 1.271325 TGTACTACCTCCGTCCGTTCA 60.271 52.381 0.00 0.00 0.00 3.18
507 508 1.453155 TGTACTACCTCCGTCCGTTC 58.547 55.000 0.00 0.00 0.00 3.95
508 509 2.019984 GATGTACTACCTCCGTCCGTT 58.980 52.381 0.00 0.00 0.00 4.44
509 510 1.065199 TGATGTACTACCTCCGTCCGT 60.065 52.381 0.00 0.00 0.00 4.69
510 511 1.332997 GTGATGTACTACCTCCGTCCG 59.667 57.143 0.00 0.00 0.00 4.79
511 512 2.372264 TGTGATGTACTACCTCCGTCC 58.628 52.381 0.00 0.00 0.00 4.79
512 513 4.445452 TTTGTGATGTACTACCTCCGTC 57.555 45.455 0.00 0.00 0.00 4.79
513 514 5.889853 TCTATTTGTGATGTACTACCTCCGT 59.110 40.000 0.00 0.00 0.00 4.69
514 515 6.207213 GTCTATTTGTGATGTACTACCTCCG 58.793 44.000 0.00 0.00 0.00 4.63
515 516 6.207213 CGTCTATTTGTGATGTACTACCTCC 58.793 44.000 0.00 0.00 0.00 4.30
516 517 5.686397 GCGTCTATTTGTGATGTACTACCTC 59.314 44.000 0.00 0.00 0.00 3.85
517 518 5.360144 AGCGTCTATTTGTGATGTACTACCT 59.640 40.000 0.00 0.00 0.00 3.08
518 519 5.589192 AGCGTCTATTTGTGATGTACTACC 58.411 41.667 0.00 0.00 0.00 3.18
519 520 5.395778 CGAGCGTCTATTTGTGATGTACTAC 59.604 44.000 0.00 0.00 0.00 2.73
520 521 5.507974 CGAGCGTCTATTTGTGATGTACTA 58.492 41.667 0.00 0.00 0.00 1.82
521 522 4.352039 CGAGCGTCTATTTGTGATGTACT 58.648 43.478 0.00 0.00 0.00 2.73
522 523 3.061139 GCGAGCGTCTATTTGTGATGTAC 60.061 47.826 0.00 0.00 0.00 2.90
523 524 3.113322 GCGAGCGTCTATTTGTGATGTA 58.887 45.455 0.00 0.00 0.00 2.29
524 525 1.927174 GCGAGCGTCTATTTGTGATGT 59.073 47.619 0.00 0.00 0.00 3.06
525 526 2.196749 AGCGAGCGTCTATTTGTGATG 58.803 47.619 0.00 0.00 0.00 3.07
526 527 2.586258 AGCGAGCGTCTATTTGTGAT 57.414 45.000 0.00 0.00 0.00 3.06
527 528 2.259618 GAAGCGAGCGTCTATTTGTGA 58.740 47.619 3.85 0.00 0.00 3.58
528 529 1.992667 TGAAGCGAGCGTCTATTTGTG 59.007 47.619 11.80 0.00 0.00 3.33
529 530 2.363788 TGAAGCGAGCGTCTATTTGT 57.636 45.000 11.80 0.00 0.00 2.83
530 531 3.933155 AATGAAGCGAGCGTCTATTTG 57.067 42.857 11.80 0.00 0.00 2.32
531 532 4.946784 AAAATGAAGCGAGCGTCTATTT 57.053 36.364 11.80 11.83 0.00 1.40
532 533 4.946784 AAAAATGAAGCGAGCGTCTATT 57.053 36.364 11.80 7.44 0.00 1.73
552 553 9.587772 TTGTTCATTTCGTTCCTCAATTAAAAA 57.412 25.926 0.00 0.00 0.00 1.94
553 554 9.243637 CTTGTTCATTTCGTTCCTCAATTAAAA 57.756 29.630 0.00 0.00 0.00 1.52
554 555 8.625651 TCTTGTTCATTTCGTTCCTCAATTAAA 58.374 29.630 0.00 0.00 0.00 1.52
555 556 8.073768 GTCTTGTTCATTTCGTTCCTCAATTAA 58.926 33.333 0.00 0.00 0.00 1.40
556 557 7.227711 TGTCTTGTTCATTTCGTTCCTCAATTA 59.772 33.333 0.00 0.00 0.00 1.40
557 558 6.039270 TGTCTTGTTCATTTCGTTCCTCAATT 59.961 34.615 0.00 0.00 0.00 2.32
558 559 5.530915 TGTCTTGTTCATTTCGTTCCTCAAT 59.469 36.000 0.00 0.00 0.00 2.57
559 560 4.878971 TGTCTTGTTCATTTCGTTCCTCAA 59.121 37.500 0.00 0.00 0.00 3.02
560 561 4.447290 TGTCTTGTTCATTTCGTTCCTCA 58.553 39.130 0.00 0.00 0.00 3.86
561 562 4.611581 GCTGTCTTGTTCATTTCGTTCCTC 60.612 45.833 0.00 0.00 0.00 3.71
562 563 3.251004 GCTGTCTTGTTCATTTCGTTCCT 59.749 43.478 0.00 0.00 0.00 3.36
563 564 3.555518 GCTGTCTTGTTCATTTCGTTCC 58.444 45.455 0.00 0.00 0.00 3.62
564 565 3.555518 GGCTGTCTTGTTCATTTCGTTC 58.444 45.455 0.00 0.00 0.00 3.95
565 566 2.293399 GGGCTGTCTTGTTCATTTCGTT 59.707 45.455 0.00 0.00 0.00 3.85
566 567 1.880027 GGGCTGTCTTGTTCATTTCGT 59.120 47.619 0.00 0.00 0.00 3.85
567 568 2.095567 CAGGGCTGTCTTGTTCATTTCG 60.096 50.000 0.00 0.00 0.00 3.46
568 569 3.149196 TCAGGGCTGTCTTGTTCATTTC 58.851 45.455 0.00 0.00 0.00 2.17
569 570 3.228188 TCAGGGCTGTCTTGTTCATTT 57.772 42.857 0.00 0.00 0.00 2.32
570 571 2.957402 TCAGGGCTGTCTTGTTCATT 57.043 45.000 0.00 0.00 0.00 2.57
571 572 2.957402 TTCAGGGCTGTCTTGTTCAT 57.043 45.000 0.00 0.00 0.00 2.57
572 573 2.727123 TTTCAGGGCTGTCTTGTTCA 57.273 45.000 0.00 0.00 0.00 3.18
623 624 6.145338 TGCTTTGGTAACGTTCCATTTTAA 57.855 33.333 16.70 9.51 42.51 1.52
624 625 5.769484 TGCTTTGGTAACGTTCCATTTTA 57.231 34.783 16.70 3.52 42.51 1.52
625 626 4.657436 TGCTTTGGTAACGTTCCATTTT 57.343 36.364 16.70 0.00 42.51 1.82
651 652 2.884639 CACTTTGATTTCCTGGTCCGTT 59.115 45.455 0.00 0.00 0.00 4.44
1047 1076 2.754658 TCCTTCTCGCCTCCGTCC 60.755 66.667 0.00 0.00 35.54 4.79
1273 1308 3.706086 TGCTGCATCCAGTGAACTCTATA 59.294 43.478 0.00 0.00 41.26 1.31
1274 1309 2.502947 TGCTGCATCCAGTGAACTCTAT 59.497 45.455 0.00 0.00 41.26 1.98
1275 1310 1.901833 TGCTGCATCCAGTGAACTCTA 59.098 47.619 0.00 0.00 41.26 2.43
1276 1311 0.689055 TGCTGCATCCAGTGAACTCT 59.311 50.000 0.00 0.00 41.26 3.24
1329 1377 7.457852 AGCTATACATGATAGGGATTTACACCA 59.542 37.037 0.00 0.00 38.43 4.17
1336 1393 6.900186 ACAGCTAGCTATACATGATAGGGATT 59.100 38.462 18.86 0.00 38.43 3.01
1374 1431 5.086104 ACTCAAAACCATATGCTAGACGT 57.914 39.130 0.00 0.00 0.00 4.34
1375 1432 5.812642 AGAACTCAAAACCATATGCTAGACG 59.187 40.000 0.00 0.00 0.00 4.18
1376 1433 7.119846 ACAAGAACTCAAAACCATATGCTAGAC 59.880 37.037 0.00 0.00 0.00 2.59
1377 1434 7.119699 CACAAGAACTCAAAACCATATGCTAGA 59.880 37.037 0.00 0.00 0.00 2.43
1378 1435 7.094634 ACACAAGAACTCAAAACCATATGCTAG 60.095 37.037 0.00 0.00 0.00 3.42
1379 1436 6.714810 ACACAAGAACTCAAAACCATATGCTA 59.285 34.615 0.00 0.00 0.00 3.49
1380 1437 5.536161 ACACAAGAACTCAAAACCATATGCT 59.464 36.000 0.00 0.00 0.00 3.79
1385 1447 6.273071 GCTAAACACAAGAACTCAAAACCAT 58.727 36.000 0.00 0.00 0.00 3.55
1391 1453 3.799366 TCGGCTAAACACAAGAACTCAA 58.201 40.909 0.00 0.00 0.00 3.02
1472 1535 9.964303 TCAGACAAAATAACAAACGTAGTACTA 57.036 29.630 0.00 0.00 45.00 1.82
1473 1536 8.876275 TCAGACAAAATAACAAACGTAGTACT 57.124 30.769 0.00 0.00 45.00 2.73
1474 1537 9.919348 TTTCAGACAAAATAACAAACGTAGTAC 57.081 29.630 0.00 0.00 45.00 2.73
1477 1540 9.658475 TGATTTCAGACAAAATAACAAACGTAG 57.342 29.630 0.00 0.00 0.00 3.51
1507 1570 6.536582 GCCACAGCTAACCATATATACAGATG 59.463 42.308 0.00 0.00 35.50 2.90
1513 1576 6.724441 AGTACTGCCACAGCTAACCATATATA 59.276 38.462 0.00 0.00 40.80 0.86
1514 1577 4.982241 ACTGCCACAGCTAACCATATAT 57.018 40.909 0.00 0.00 40.80 0.86
1579 1642 2.239400 CGGCCAGAGACTATGTATCCA 58.761 52.381 2.24 0.00 0.00 3.41
1585 1648 2.136878 AGCCCGGCCAGAGACTATG 61.137 63.158 5.55 0.00 0.00 2.23
1591 1654 3.821636 CTATGCAGCCCGGCCAGAG 62.822 68.421 5.55 0.51 0.00 3.35
1602 1671 5.948162 ACAAATAGATAATGGGGCTATGCAG 59.052 40.000 0.00 0.00 0.00 4.41
1609 1678 6.998673 ACTAGTCAACAAATAGATAATGGGGC 59.001 38.462 0.00 0.00 0.00 5.80
1639 1708 3.143712 CGTAGCAACACACGGACG 58.856 61.111 0.00 0.00 34.57 4.79
1647 1716 2.289133 TGCATTGTAGTCCGTAGCAACA 60.289 45.455 0.00 0.00 0.00 3.33
1701 1770 5.238650 GGAGAAATGAGTTTCGACCTTGAAA 59.761 40.000 0.00 0.00 46.58 2.69
1905 1982 2.979814 AGGTTTTGGCAGGAAAACAC 57.020 45.000 13.53 5.16 44.34 3.32
1959 2036 4.466015 GGGCATCATCCTGTTTTAAAGGAA 59.534 41.667 0.00 0.00 46.76 3.36
2015 2092 4.081807 GGTCCGTGGAGAAGTATAGTGTTT 60.082 45.833 0.00 0.00 0.00 2.83
2016 2093 3.446516 GGTCCGTGGAGAAGTATAGTGTT 59.553 47.826 0.00 0.00 0.00 3.32
2022 2099 1.673808 GGCGGTCCGTGGAGAAGTAT 61.674 60.000 13.94 0.00 0.00 2.12
2084 2161 3.245229 TGAATTGGCACTAACACTGGGAT 60.245 43.478 0.00 0.00 0.00 3.85
2158 2235 2.612746 TTCTTTCGGGGGAGGGGG 60.613 66.667 0.00 0.00 0.00 5.40
2228 2307 1.699634 CAGGGTCCTGTGAAGGAAGAA 59.300 52.381 8.78 0.00 40.06 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.