Multiple sequence alignment - TraesCS2D01G157900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G157900 chr2D 100.000 4076 0 0 1 4076 101380959 101376884 0.000000e+00 7528
1 TraesCS2D01G157900 chr2D 87.083 1169 137 7 1915 3076 100421021 100422182 0.000000e+00 1310
2 TraesCS2D01G157900 chr2D 86.707 1166 144 6 1915 3076 101364446 101363288 0.000000e+00 1284
3 TraesCS2D01G157900 chr2D 85.751 1172 159 6 1911 3076 100954306 100953137 0.000000e+00 1232
4 TraesCS2D01G157900 chr2D 85.150 1165 152 13 1915 3076 100783567 100782421 0.000000e+00 1173
5 TraesCS2D01G157900 chr2D 89.570 604 40 10 743 1339 101365114 101364527 0.000000e+00 745
6 TraesCS2D01G157900 chr2D 85.000 760 44 29 585 1334 100420262 100420961 0.000000e+00 708
7 TraesCS2D01G157900 chr2D 87.007 608 53 17 743 1334 100784270 100783673 0.000000e+00 662
8 TraesCS2D01G157900 chr2D 93.680 269 16 1 1488 1755 101384798 101385066 6.350000e-108 401
9 TraesCS2D01G157900 chr2D 94.779 249 11 2 1489 1735 459810942 459810694 1.780000e-103 387
10 TraesCS2D01G157900 chr2D 83.333 258 36 7 1 253 110993478 110993733 8.810000e-57 231
11 TraesCS2D01G157900 chr2D 82.946 258 37 7 1 253 619167156 619166901 4.100000e-55 226
12 TraesCS2D01G157900 chr2D 82.375 261 40 6 1 256 78028024 78027765 5.300000e-54 222
13 TraesCS2D01G157900 chr2A 93.168 2181 122 11 1836 4002 100651240 100649073 0.000000e+00 3177
14 TraesCS2D01G157900 chr2A 86.953 1165 140 8 1915 3075 100539039 100540195 0.000000e+00 1299
15 TraesCS2D01G157900 chr2A 90.522 939 45 19 581 1491 100657160 100656238 0.000000e+00 1201
16 TraesCS2D01G157900 chr2A 85.470 1170 142 15 1911 3076 100632458 100631313 0.000000e+00 1194
17 TraesCS2D01G157900 chr2A 87.234 611 54 15 743 1339 100633158 100632558 0.000000e+00 675
18 TraesCS2D01G157900 chr2A 83.505 776 71 32 585 1337 100538208 100538949 0.000000e+00 671
19 TraesCS2D01G157900 chr2A 93.776 241 2 9 333 561 100659216 100658977 2.330000e-92 350
20 TraesCS2D01G157900 chr2B 97.209 1684 36 8 1728 3405 152609944 152608266 0.000000e+00 2839
21 TraesCS2D01G157900 chr2B 90.442 1109 58 15 405 1491 152611025 152609943 0.000000e+00 1417
22 TraesCS2D01G157900 chr2B 87.105 1171 133 11 1915 3076 152472991 152474152 0.000000e+00 1310
23 TraesCS2D01G157900 chr2B 93.027 674 24 2 3404 4076 152608105 152607454 0.000000e+00 963
24 TraesCS2D01G157900 chr2B 86.439 848 105 6 2271 3108 152569896 152569049 0.000000e+00 920
25 TraesCS2D01G157900 chr2B 87.954 606 43 10 743 1341 152472322 152472904 0.000000e+00 688
26 TraesCS2D01G157900 chr2B 86.992 615 52 19 743 1339 152570846 152570242 0.000000e+00 667
27 TraesCS2D01G157900 chr5B 83.457 810 131 2 2270 3076 668462301 668463110 0.000000e+00 750
28 TraesCS2D01G157900 chr5B 84.047 257 35 5 1 253 639667943 639668197 4.070000e-60 243
29 TraesCS2D01G157900 chr5B 83.721 258 35 6 1 253 582781225 582780970 1.890000e-58 237
30 TraesCS2D01G157900 chr5B 81.081 259 16 13 284 525 462560405 462560163 4.190000e-40 176
31 TraesCS2D01G157900 chr4A 83.130 818 127 10 2264 3073 714276983 714277797 0.000000e+00 736
32 TraesCS2D01G157900 chr3D 94.902 255 11 2 1485 1737 129016578 129016832 8.210000e-107 398
33 TraesCS2D01G157900 chr3D 95.510 245 10 1 1488 1731 94886601 94886845 1.370000e-104 390
34 TraesCS2D01G157900 chr3D 95.868 242 9 1 1490 1730 496111240 496111481 1.370000e-104 390
35 TraesCS2D01G157900 chr3D 86.434 258 30 5 1 255 85025173 85025428 1.120000e-70 278
36 TraesCS2D01G157900 chr4D 95.902 244 9 1 1487 1729 48534353 48534596 1.060000e-105 394
37 TraesCS2D01G157900 chr4D 93.411 258 15 2 1488 1743 490981608 490981351 8.270000e-102 381
38 TraesCS2D01G157900 chr6D 95.492 244 10 1 1489 1731 388228703 388228946 4.940000e-104 388
39 TraesCS2D01G157900 chr1D 94.466 253 11 3 1485 1734 16231987 16232239 1.780000e-103 387
40 TraesCS2D01G157900 chr1D 86.454 251 29 4 1 247 448220299 448220548 1.870000e-68 270
41 TraesCS2D01G157900 chr1D 84.291 261 36 4 1 257 223469971 223470230 2.430000e-62 250
42 TraesCS2D01G157900 chr1D 84.585 253 34 5 3 251 52363005 52363256 3.150000e-61 246


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G157900 chr2D 101376884 101380959 4075 True 7528.000000 7528 100.000000 1 4076 1 chr2D.!!$R3 4075
1 TraesCS2D01G157900 chr2D 100953137 100954306 1169 True 1232.000000 1232 85.751000 1911 3076 1 chr2D.!!$R2 1165
2 TraesCS2D01G157900 chr2D 101363288 101365114 1826 True 1014.500000 1284 88.138500 743 3076 2 chr2D.!!$R7 2333
3 TraesCS2D01G157900 chr2D 100420262 100422182 1920 False 1009.000000 1310 86.041500 585 3076 2 chr2D.!!$F3 2491
4 TraesCS2D01G157900 chr2D 100782421 100784270 1849 True 917.500000 1173 86.078500 743 3076 2 chr2D.!!$R6 2333
5 TraesCS2D01G157900 chr2A 100649073 100651240 2167 True 3177.000000 3177 93.168000 1836 4002 1 chr2A.!!$R1 2166
6 TraesCS2D01G157900 chr2A 100538208 100540195 1987 False 985.000000 1299 85.229000 585 3075 2 chr2A.!!$F1 2490
7 TraesCS2D01G157900 chr2A 100631313 100633158 1845 True 934.500000 1194 86.352000 743 3076 2 chr2A.!!$R2 2333
8 TraesCS2D01G157900 chr2A 100656238 100659216 2978 True 775.500000 1201 92.149000 333 1491 2 chr2A.!!$R3 1158
9 TraesCS2D01G157900 chr2B 152607454 152611025 3571 True 1739.666667 2839 93.559333 405 4076 3 chr2B.!!$R2 3671
10 TraesCS2D01G157900 chr2B 152472322 152474152 1830 False 999.000000 1310 87.529500 743 3076 2 chr2B.!!$F1 2333
11 TraesCS2D01G157900 chr2B 152569049 152570846 1797 True 793.500000 920 86.715500 743 3108 2 chr2B.!!$R1 2365
12 TraesCS2D01G157900 chr5B 668462301 668463110 809 False 750.000000 750 83.457000 2270 3076 1 chr5B.!!$F2 806
13 TraesCS2D01G157900 chr4A 714276983 714277797 814 False 736.000000 736 83.130000 2264 3073 1 chr4A.!!$F1 809

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
94 95 0.038892 GTCCGTTTGCTGTCCGTCTA 60.039 55.0 0.00 0.00 0.00 2.59 F
275 276 0.102481 GGCGAGACATGTCGTGGTAT 59.898 55.0 19.85 1.13 42.17 2.73 F
1521 3425 0.040425 CCAAAATATAGTGCGCCCGC 60.040 55.0 4.18 5.60 42.35 6.13 F
1646 3550 0.102300 ATAATTTTTGCTCCCGCCGC 59.898 50.0 0.00 0.00 34.43 6.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1502 3406 0.040425 GCGGGCGCACTATATTTTGG 60.040 55.000 8.62 0.0 41.49 3.28 R
1553 3457 0.110056 GCAGTCGGTCTCGTTCGTTA 60.110 55.000 0.00 0.0 37.69 3.18 R
3016 4945 0.324614 TTGGGTCGCACTGTGATCAT 59.675 50.000 12.86 0.0 0.00 2.45 R
3567 5676 3.446442 AATGATGGAGGGGATACATGC 57.554 47.619 0.00 0.0 30.07 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.962412 CGCGTGCACATTTATGTTGT 58.038 45.000 18.64 0.00 39.39 3.32
20 21 1.643326 CGCGTGCACATTTATGTTGTG 59.357 47.619 18.64 0.00 45.74 3.33
26 27 2.594321 CACATTTATGTTGTGCGGTGG 58.406 47.619 0.00 0.00 39.39 4.61
27 28 1.543802 ACATTTATGTTGTGCGGTGGG 59.456 47.619 0.00 0.00 37.90 4.61
28 29 1.815613 CATTTATGTTGTGCGGTGGGA 59.184 47.619 0.00 0.00 0.00 4.37
29 30 1.529226 TTTATGTTGTGCGGTGGGAG 58.471 50.000 0.00 0.00 0.00 4.30
30 31 0.322098 TTATGTTGTGCGGTGGGAGG 60.322 55.000 0.00 0.00 0.00 4.30
31 32 1.485294 TATGTTGTGCGGTGGGAGGT 61.485 55.000 0.00 0.00 0.00 3.85
32 33 1.485294 ATGTTGTGCGGTGGGAGGTA 61.485 55.000 0.00 0.00 0.00 3.08
33 34 1.375523 GTTGTGCGGTGGGAGGTAG 60.376 63.158 0.00 0.00 0.00 3.18
34 35 2.589157 TTGTGCGGTGGGAGGTAGG 61.589 63.158 0.00 0.00 0.00 3.18
35 36 3.001406 GTGCGGTGGGAGGTAGGT 61.001 66.667 0.00 0.00 0.00 3.08
36 37 3.000819 TGCGGTGGGAGGTAGGTG 61.001 66.667 0.00 0.00 0.00 4.00
37 38 3.782443 GCGGTGGGAGGTAGGTGG 61.782 72.222 0.00 0.00 0.00 4.61
38 39 3.782443 CGGTGGGAGGTAGGTGGC 61.782 72.222 0.00 0.00 0.00 5.01
39 40 3.408853 GGTGGGAGGTAGGTGGCC 61.409 72.222 0.00 0.00 0.00 5.36
40 41 3.782443 GTGGGAGGTAGGTGGCCG 61.782 72.222 0.00 0.00 0.00 6.13
44 45 4.162690 GAGGTAGGTGGCCGCCTG 62.163 72.222 42.20 0.00 39.60 4.85
69 70 3.696426 GCATCGATGCGGACGAGC 61.696 66.667 32.60 9.47 44.67 5.03
70 71 3.390017 CATCGATGCGGACGAGCG 61.390 66.667 13.37 0.00 42.81 5.03
71 72 3.583086 ATCGATGCGGACGAGCGA 61.583 61.111 0.00 1.56 42.81 4.93
72 73 3.808771 ATCGATGCGGACGAGCGAC 62.809 63.158 0.00 0.00 42.81 5.19
89 90 2.935955 CGTGTCCGTTTGCTGTCC 59.064 61.111 0.00 0.00 0.00 4.02
90 91 2.935955 GTGTCCGTTTGCTGTCCG 59.064 61.111 0.00 0.00 0.00 4.79
91 92 1.885850 GTGTCCGTTTGCTGTCCGT 60.886 57.895 0.00 0.00 0.00 4.69
92 93 1.593209 TGTCCGTTTGCTGTCCGTC 60.593 57.895 0.00 0.00 0.00 4.79
93 94 1.300697 GTCCGTTTGCTGTCCGTCT 60.301 57.895 0.00 0.00 0.00 4.18
94 95 0.038892 GTCCGTTTGCTGTCCGTCTA 60.039 55.000 0.00 0.00 0.00 2.59
95 96 0.242825 TCCGTTTGCTGTCCGTCTAG 59.757 55.000 0.00 0.00 0.00 2.43
96 97 0.242825 CCGTTTGCTGTCCGTCTAGA 59.757 55.000 0.00 0.00 0.00 2.43
97 98 1.135083 CCGTTTGCTGTCCGTCTAGAT 60.135 52.381 0.00 0.00 0.00 1.98
98 99 2.186076 CGTTTGCTGTCCGTCTAGATC 58.814 52.381 0.00 0.00 0.00 2.75
99 100 2.541556 GTTTGCTGTCCGTCTAGATCC 58.458 52.381 0.00 0.00 0.00 3.36
100 101 1.847328 TTGCTGTCCGTCTAGATCCA 58.153 50.000 0.00 0.00 0.00 3.41
101 102 1.847328 TGCTGTCCGTCTAGATCCAA 58.153 50.000 0.00 0.00 0.00 3.53
102 103 2.176045 TGCTGTCCGTCTAGATCCAAA 58.824 47.619 0.00 0.00 0.00 3.28
103 104 2.094182 TGCTGTCCGTCTAGATCCAAAC 60.094 50.000 0.00 0.00 0.00 2.93
104 105 2.738964 GCTGTCCGTCTAGATCCAAACC 60.739 54.545 0.00 0.00 0.00 3.27
105 106 1.475280 TGTCCGTCTAGATCCAAACCG 59.525 52.381 0.00 0.00 0.00 4.44
106 107 1.747355 GTCCGTCTAGATCCAAACCGA 59.253 52.381 0.00 0.00 0.00 4.69
107 108 2.165030 GTCCGTCTAGATCCAAACCGAA 59.835 50.000 0.00 0.00 0.00 4.30
108 109 2.165030 TCCGTCTAGATCCAAACCGAAC 59.835 50.000 0.00 0.00 0.00 3.95
109 110 2.094390 CCGTCTAGATCCAAACCGAACA 60.094 50.000 0.00 0.00 0.00 3.18
110 111 3.430374 CCGTCTAGATCCAAACCGAACAT 60.430 47.826 0.00 0.00 0.00 2.71
111 112 3.551890 CGTCTAGATCCAAACCGAACATG 59.448 47.826 0.00 0.00 0.00 3.21
112 113 4.504858 GTCTAGATCCAAACCGAACATGT 58.495 43.478 0.00 0.00 0.00 3.21
113 114 4.330074 GTCTAGATCCAAACCGAACATGTG 59.670 45.833 0.00 0.00 0.00 3.21
114 115 3.140325 AGATCCAAACCGAACATGTGT 57.860 42.857 0.00 0.00 0.00 3.72
115 116 3.486383 AGATCCAAACCGAACATGTGTT 58.514 40.909 0.00 0.00 41.64 3.32
116 117 3.253188 AGATCCAAACCGAACATGTGTTG 59.747 43.478 0.00 0.00 38.56 3.33
117 118 2.370349 TCCAAACCGAACATGTGTTGT 58.630 42.857 0.00 0.00 41.53 3.32
118 119 2.098280 TCCAAACCGAACATGTGTTGTG 59.902 45.455 0.00 1.75 38.99 3.33
119 120 1.851666 CAAACCGAACATGTGTTGTGC 59.148 47.619 0.00 0.00 38.99 4.57
120 121 1.388547 AACCGAACATGTGTTGTGCT 58.611 45.000 0.00 0.00 38.99 4.40
121 122 0.944386 ACCGAACATGTGTTGTGCTC 59.056 50.000 0.00 0.00 38.99 4.26
122 123 0.110688 CCGAACATGTGTTGTGCTCG 60.111 55.000 0.00 2.67 38.99 5.03
123 124 0.858583 CGAACATGTGTTGTGCTCGA 59.141 50.000 7.86 0.00 39.74 4.04
124 125 1.260297 CGAACATGTGTTGTGCTCGAA 59.740 47.619 7.86 0.00 39.74 3.71
125 126 2.286125 CGAACATGTGTTGTGCTCGAAA 60.286 45.455 7.86 0.00 39.74 3.46
126 127 3.606846 CGAACATGTGTTGTGCTCGAAAT 60.607 43.478 7.86 0.00 39.74 2.17
127 128 3.272439 ACATGTGTTGTGCTCGAAATG 57.728 42.857 0.00 0.00 37.11 2.32
128 129 2.030893 ACATGTGTTGTGCTCGAAATGG 60.031 45.455 0.00 0.00 37.11 3.16
129 130 0.950836 TGTGTTGTGCTCGAAATGGG 59.049 50.000 0.00 0.00 0.00 4.00
130 131 0.951558 GTGTTGTGCTCGAAATGGGT 59.048 50.000 0.00 0.00 0.00 4.51
131 132 1.069227 GTGTTGTGCTCGAAATGGGTC 60.069 52.381 0.00 0.00 0.00 4.46
132 133 0.165944 GTTGTGCTCGAAATGGGTCG 59.834 55.000 0.00 0.00 42.48 4.79
133 134 0.953471 TTGTGCTCGAAATGGGTCGG 60.953 55.000 0.00 0.00 41.43 4.79
134 135 1.079405 GTGCTCGAAATGGGTCGGA 60.079 57.895 0.00 0.00 41.43 4.55
135 136 1.079405 TGCTCGAAATGGGTCGGAC 60.079 57.895 0.00 0.00 41.43 4.79
136 137 1.814169 GCTCGAAATGGGTCGGACC 60.814 63.158 19.06 19.06 41.43 4.46
137 138 1.518572 CTCGAAATGGGTCGGACCG 60.519 63.158 20.35 7.84 39.83 4.79
138 139 2.510691 CGAAATGGGTCGGACCGG 60.511 66.667 20.35 0.00 39.83 5.28
139 140 2.983791 GAAATGGGTCGGACCGGA 59.016 61.111 20.35 10.28 39.83 5.14
140 141 1.449070 GAAATGGGTCGGACCGGAC 60.449 63.158 20.35 10.73 39.83 4.79
141 142 2.175035 GAAATGGGTCGGACCGGACA 62.175 60.000 20.35 13.33 39.83 4.02
142 143 2.459202 AAATGGGTCGGACCGGACAC 62.459 60.000 20.35 12.48 39.83 3.67
144 145 3.618750 GGGTCGGACCGGACACAA 61.619 66.667 20.35 0.00 40.14 3.33
145 146 2.422591 GGTCGGACCGGACACAAA 59.577 61.111 15.25 0.00 38.70 2.83
146 147 1.227615 GGTCGGACCGGACACAAAA 60.228 57.895 15.25 0.00 38.70 2.44
147 148 1.501337 GGTCGGACCGGACACAAAAC 61.501 60.000 15.25 1.48 38.70 2.43
148 149 1.592131 TCGGACCGGACACAAAACG 60.592 57.895 15.25 0.00 0.00 3.60
154 155 3.817960 CGGACACAAAACGGACAAG 57.182 52.632 0.00 0.00 0.00 3.16
155 156 1.292061 CGGACACAAAACGGACAAGA 58.708 50.000 0.00 0.00 0.00 3.02
156 157 1.871039 CGGACACAAAACGGACAAGAT 59.129 47.619 0.00 0.00 0.00 2.40
157 158 2.349438 CGGACACAAAACGGACAAGATG 60.349 50.000 0.00 0.00 0.00 2.90
158 159 2.031157 GGACACAAAACGGACAAGATGG 60.031 50.000 0.00 0.00 0.00 3.51
159 160 2.616842 GACACAAAACGGACAAGATGGT 59.383 45.455 0.00 0.00 0.00 3.55
160 161 2.616842 ACACAAAACGGACAAGATGGTC 59.383 45.455 0.00 0.00 37.06 4.02
166 167 4.645809 GACAAGATGGTCCAGGGC 57.354 61.111 0.00 0.00 0.00 5.19
167 168 1.685224 GACAAGATGGTCCAGGGCA 59.315 57.895 0.00 0.00 0.00 5.36
168 169 0.257039 GACAAGATGGTCCAGGGCAT 59.743 55.000 0.00 0.00 0.00 4.40
169 170 0.257039 ACAAGATGGTCCAGGGCATC 59.743 55.000 0.00 0.00 0.00 3.91
170 171 0.816825 CAAGATGGTCCAGGGCATCG 60.817 60.000 0.00 0.00 0.00 3.84
171 172 2.592861 GATGGTCCAGGGCATCGC 60.593 66.667 0.00 0.00 0.00 4.58
172 173 4.552365 ATGGTCCAGGGCATCGCG 62.552 66.667 0.00 0.00 0.00 5.87
201 202 1.659098 CGTGAGGTCTATCCGTTTTGC 59.341 52.381 0.00 0.00 41.99 3.68
202 203 2.007608 GTGAGGTCTATCCGTTTTGCC 58.992 52.381 0.00 0.00 41.99 4.52
203 204 1.065709 TGAGGTCTATCCGTTTTGCCC 60.066 52.381 0.00 0.00 41.99 5.36
204 205 1.209747 GAGGTCTATCCGTTTTGCCCT 59.790 52.381 0.00 0.00 41.99 5.19
205 206 2.433239 GAGGTCTATCCGTTTTGCCCTA 59.567 50.000 0.00 0.00 41.99 3.53
206 207 2.841881 AGGTCTATCCGTTTTGCCCTAA 59.158 45.455 0.00 0.00 41.99 2.69
207 208 3.264964 AGGTCTATCCGTTTTGCCCTAAA 59.735 43.478 0.00 0.00 41.99 1.85
208 209 3.376234 GGTCTATCCGTTTTGCCCTAAAC 59.624 47.826 0.00 0.00 35.23 2.01
213 214 2.791092 GTTTTGCCCTAAACGCACG 58.209 52.632 0.00 0.00 35.56 5.34
214 215 0.662077 GTTTTGCCCTAAACGCACGG 60.662 55.000 0.00 0.00 35.56 4.94
215 216 1.797211 TTTTGCCCTAAACGCACGGG 61.797 55.000 0.00 0.00 41.06 5.28
216 217 4.708386 TGCCCTAAACGCACGGGG 62.708 66.667 0.00 0.00 41.64 5.73
226 227 4.875713 GCACGGGGCCGGATGAAT 62.876 66.667 18.95 0.00 44.69 2.57
227 228 2.901840 CACGGGGCCGGATGAATG 60.902 66.667 18.95 0.95 44.69 2.67
228 229 4.189580 ACGGGGCCGGATGAATGG 62.190 66.667 18.95 0.00 44.69 3.16
229 230 4.954970 CGGGGCCGGATGAATGGG 62.955 72.222 5.05 0.00 35.56 4.00
230 231 4.603535 GGGGCCGGATGAATGGGG 62.604 72.222 5.05 0.00 0.00 4.96
231 232 3.820843 GGGCCGGATGAATGGGGT 61.821 66.667 5.05 0.00 0.00 4.95
232 233 2.203351 GGCCGGATGAATGGGGTC 60.203 66.667 5.05 0.00 0.00 4.46
233 234 2.595095 GCCGGATGAATGGGGTCA 59.405 61.111 5.05 0.00 0.00 4.02
234 235 1.823899 GCCGGATGAATGGGGTCAC 60.824 63.158 5.05 0.00 0.00 3.67
235 236 1.523711 CCGGATGAATGGGGTCACG 60.524 63.158 0.00 0.00 0.00 4.35
236 237 2.180204 CGGATGAATGGGGTCACGC 61.180 63.158 0.00 0.00 0.00 5.34
237 238 2.180204 GGATGAATGGGGTCACGCG 61.180 63.158 3.53 3.53 0.00 6.01
238 239 2.823829 GATGAATGGGGTCACGCGC 61.824 63.158 5.73 0.00 0.00 6.86
239 240 3.329542 ATGAATGGGGTCACGCGCT 62.330 57.895 5.73 0.00 0.00 5.92
240 241 3.499737 GAATGGGGTCACGCGCTG 61.500 66.667 5.73 3.89 0.00 5.18
245 246 4.681978 GGGTCACGCGCTGGAGTT 62.682 66.667 5.73 0.00 0.00 3.01
246 247 3.414700 GGTCACGCGCTGGAGTTG 61.415 66.667 5.73 0.00 0.00 3.16
247 248 3.414700 GTCACGCGCTGGAGTTGG 61.415 66.667 5.73 0.00 0.00 3.77
252 253 2.046314 GCGCTGGAGTTGGCCTTA 60.046 61.111 3.32 0.00 0.00 2.69
253 254 1.674322 GCGCTGGAGTTGGCCTTAA 60.674 57.895 3.32 0.00 0.00 1.85
254 255 1.923227 GCGCTGGAGTTGGCCTTAAC 61.923 60.000 3.32 0.00 0.00 2.01
255 256 0.605319 CGCTGGAGTTGGCCTTAACA 60.605 55.000 3.32 0.00 33.02 2.41
256 257 1.168714 GCTGGAGTTGGCCTTAACAG 58.831 55.000 3.32 7.46 33.02 3.16
257 258 1.826385 CTGGAGTTGGCCTTAACAGG 58.174 55.000 3.32 0.00 44.28 4.00
267 268 2.386661 CCTTAACAGGCGAGACATGT 57.613 50.000 0.00 0.00 31.53 3.21
268 269 2.271800 CCTTAACAGGCGAGACATGTC 58.728 52.381 18.47 18.47 31.53 3.06
269 270 1.920574 CTTAACAGGCGAGACATGTCG 59.079 52.381 19.85 11.23 43.08 4.35
270 271 0.885879 TAACAGGCGAGACATGTCGT 59.114 50.000 19.85 8.01 42.17 4.34
271 272 0.667487 AACAGGCGAGACATGTCGTG 60.667 55.000 19.85 16.56 42.17 4.35
272 273 1.807165 CAGGCGAGACATGTCGTGG 60.807 63.158 19.85 13.66 42.17 4.94
273 274 2.261671 GGCGAGACATGTCGTGGT 59.738 61.111 19.85 2.34 42.17 4.16
274 275 0.963856 AGGCGAGACATGTCGTGGTA 60.964 55.000 19.85 0.00 42.17 3.25
275 276 0.102481 GGCGAGACATGTCGTGGTAT 59.898 55.000 19.85 1.13 42.17 2.73
276 277 1.200483 GCGAGACATGTCGTGGTATG 58.800 55.000 19.85 7.28 42.17 2.39
277 278 1.469251 GCGAGACATGTCGTGGTATGT 60.469 52.381 19.85 0.00 42.17 2.29
278 279 2.223409 GCGAGACATGTCGTGGTATGTA 60.223 50.000 19.85 0.00 42.17 2.29
279 280 3.550233 GCGAGACATGTCGTGGTATGTAT 60.550 47.826 19.85 0.00 42.17 2.29
280 281 3.975035 CGAGACATGTCGTGGTATGTATG 59.025 47.826 19.85 0.00 37.63 2.39
281 282 3.717707 AGACATGTCGTGGTATGTATGC 58.282 45.455 19.85 0.00 37.63 3.14
282 283 2.469826 ACATGTCGTGGTATGTATGCG 58.530 47.619 0.00 0.00 35.86 4.73
283 284 2.100087 ACATGTCGTGGTATGTATGCGA 59.900 45.455 0.00 0.00 35.86 5.10
292 293 4.217035 TGTATGCGACATGGTGCC 57.783 55.556 8.70 0.00 31.20 5.01
293 294 1.813337 TGTATGCGACATGGTGCCG 60.813 57.895 8.70 2.47 31.20 5.69
297 298 3.264897 GCGACATGGTGCCGCTAG 61.265 66.667 13.92 0.00 44.83 3.42
298 299 3.264897 CGACATGGTGCCGCTAGC 61.265 66.667 4.06 4.06 44.14 3.42
299 300 2.897350 GACATGGTGCCGCTAGCC 60.897 66.667 9.66 0.00 42.71 3.93
300 301 4.838152 ACATGGTGCCGCTAGCCG 62.838 66.667 9.66 3.53 42.71 5.52
301 302 4.838152 CATGGTGCCGCTAGCCGT 62.838 66.667 9.66 0.00 42.71 5.68
302 303 3.151710 ATGGTGCCGCTAGCCGTA 61.152 61.111 9.66 0.00 42.71 4.02
303 304 3.151958 ATGGTGCCGCTAGCCGTAG 62.152 63.158 9.66 0.00 42.71 3.51
316 317 4.019983 CGTAGGAGGACCTGCAGT 57.980 61.111 16.21 0.11 46.80 4.40
317 318 2.277858 CGTAGGAGGACCTGCAGTT 58.722 57.895 16.21 0.00 46.80 3.16
318 319 0.608640 CGTAGGAGGACCTGCAGTTT 59.391 55.000 16.21 0.00 46.80 2.66
319 320 1.404315 CGTAGGAGGACCTGCAGTTTC 60.404 57.143 16.21 8.48 46.80 2.78
320 321 3.172208 AGGAGGACCTGCAGTTTCT 57.828 52.632 16.21 1.10 45.92 2.52
321 322 0.980423 AGGAGGACCTGCAGTTTCTC 59.020 55.000 16.21 11.07 45.92 2.87
322 323 0.980423 GGAGGACCTGCAGTTTCTCT 59.020 55.000 18.20 10.33 32.73 3.10
323 324 2.180276 GGAGGACCTGCAGTTTCTCTA 58.820 52.381 18.20 0.00 32.73 2.43
324 325 2.167487 GGAGGACCTGCAGTTTCTCTAG 59.833 54.545 18.20 0.27 32.73 2.43
325 326 3.093057 GAGGACCTGCAGTTTCTCTAGA 58.907 50.000 12.19 0.00 0.00 2.43
326 327 3.511477 AGGACCTGCAGTTTCTCTAGAA 58.489 45.455 13.81 0.00 0.00 2.10
327 328 3.513515 AGGACCTGCAGTTTCTCTAGAAG 59.486 47.826 13.81 0.00 35.21 2.85
328 329 3.258228 GACCTGCAGTTTCTCTAGAAGC 58.742 50.000 13.81 0.00 35.21 3.86
329 330 2.027653 ACCTGCAGTTTCTCTAGAAGCC 60.028 50.000 13.81 0.00 36.14 4.35
330 331 2.266554 CTGCAGTTTCTCTAGAAGCCG 58.733 52.381 5.25 0.00 36.14 5.52
331 332 1.893137 TGCAGTTTCTCTAGAAGCCGA 59.107 47.619 3.29 0.00 36.14 5.54
332 333 2.263945 GCAGTTTCTCTAGAAGCCGAC 58.736 52.381 3.29 0.00 36.14 4.79
333 334 2.094442 GCAGTTTCTCTAGAAGCCGACT 60.094 50.000 3.29 0.00 36.14 4.18
334 335 3.765026 CAGTTTCTCTAGAAGCCGACTC 58.235 50.000 3.29 0.00 36.14 3.36
335 336 3.191581 CAGTTTCTCTAGAAGCCGACTCA 59.808 47.826 3.29 0.00 36.14 3.41
336 337 3.827302 AGTTTCTCTAGAAGCCGACTCAA 59.173 43.478 3.29 0.00 36.14 3.02
342 343 4.810790 TCTAGAAGCCGACTCAAAGAAAG 58.189 43.478 0.00 0.00 0.00 2.62
343 344 3.753294 AGAAGCCGACTCAAAGAAAGA 57.247 42.857 0.00 0.00 0.00 2.52
344 345 4.073293 AGAAGCCGACTCAAAGAAAGAA 57.927 40.909 0.00 0.00 0.00 2.52
346 347 4.881850 AGAAGCCGACTCAAAGAAAGAAAA 59.118 37.500 0.00 0.00 0.00 2.29
359 360 8.333186 TCAAAGAAAGAAAAGTTTCGCTAGTAC 58.667 33.333 0.00 0.00 40.72 2.73
360 361 7.781548 AAGAAAGAAAAGTTTCGCTAGTACA 57.218 32.000 0.00 0.00 40.72 2.90
361 362 7.964604 AGAAAGAAAAGTTTCGCTAGTACAT 57.035 32.000 0.00 0.00 40.72 2.29
362 363 9.485206 AAGAAAGAAAAGTTTCGCTAGTACATA 57.515 29.630 0.00 0.00 40.72 2.29
363 364 9.141400 AGAAAGAAAAGTTTCGCTAGTACATAG 57.859 33.333 0.00 0.00 40.72 2.23
555 564 4.162690 GAGTAGCCAGCACCCCGG 62.163 72.222 0.00 0.00 0.00 5.73
663 2470 4.088648 GTCTTTCACAACAGAAACACACG 58.911 43.478 0.00 0.00 34.11 4.49
735 2542 3.516866 GATACCTTCTCCGCCGCCC 62.517 68.421 0.00 0.00 0.00 6.13
750 2576 3.103091 GCCCTACCGACATGGGTCC 62.103 68.421 0.00 0.00 44.64 4.46
754 2580 0.981277 CTACCGACATGGGTCCCCTT 60.981 60.000 5.13 0.00 44.64 3.95
898 2724 1.590147 CTACAGGTTCTTCGCCGGT 59.410 57.895 1.90 0.00 38.03 5.28
1038 2901 1.136984 CGAACTACGAAGCCGAGCT 59.863 57.895 0.00 0.00 45.77 4.09
1056 2919 2.835156 AGCTTGTAAACTCCTCTCCTCC 59.165 50.000 0.00 0.00 0.00 4.30
1072 2935 3.495331 TCCTCCAGCAGATCAGATCTAC 58.505 50.000 12.88 7.58 37.58 2.59
1073 2936 2.228582 CCTCCAGCAGATCAGATCTACG 59.771 54.545 12.88 3.11 37.58 3.51
1075 2938 4.068599 CTCCAGCAGATCAGATCTACGTA 58.931 47.826 12.88 0.00 37.58 3.57
1078 2941 4.277174 CCAGCAGATCAGATCTACGTAGTT 59.723 45.833 21.53 14.00 45.11 2.24
1079 2942 5.448438 CAGCAGATCAGATCTACGTAGTTC 58.552 45.833 21.53 21.29 45.11 3.01
1080 2943 4.212425 AGCAGATCAGATCTACGTAGTTCG 59.788 45.833 21.53 17.04 45.11 3.95
1105 2968 6.200475 GTGTTCTTAGTTCTTACGCTGTTTCT 59.800 38.462 0.00 0.00 0.00 2.52
1141 3005 1.749634 CGTTCCTCTACTGGTTCGGAT 59.250 52.381 0.00 0.00 0.00 4.18
1415 3319 2.652941 AATGCACCGTGCCATAAAAG 57.347 45.000 20.67 0.00 44.23 2.27
1432 3336 9.181061 GCCATAAAAGGGAAACTAGTAATGTAA 57.819 33.333 0.00 0.00 0.00 2.41
1438 3342 9.668497 AAAGGGAAACTAGTAATGTAAGATCAC 57.332 33.333 0.00 0.00 0.00 3.06
1485 3389 4.201920 GCGTTATTCAGGAAATCAAGGGAC 60.202 45.833 0.00 0.00 0.00 4.46
1502 3406 4.893829 GGGACTTATACTCCCTCCATTC 57.106 50.000 7.26 0.00 43.93 2.67
1503 3407 3.583526 GGGACTTATACTCCCTCCATTCC 59.416 52.174 7.26 0.00 43.93 3.01
1504 3408 4.232091 GGACTTATACTCCCTCCATTCCA 58.768 47.826 0.00 0.00 0.00 3.53
1505 3409 4.658901 GGACTTATACTCCCTCCATTCCAA 59.341 45.833 0.00 0.00 0.00 3.53
1506 3410 5.132144 GGACTTATACTCCCTCCATTCCAAA 59.868 44.000 0.00 0.00 0.00 3.28
1507 3411 6.353602 GGACTTATACTCCCTCCATTCCAAAA 60.354 42.308 0.00 0.00 0.00 2.44
1508 3412 7.226059 ACTTATACTCCCTCCATTCCAAAAT 57.774 36.000 0.00 0.00 0.00 1.82
1509 3413 8.344939 ACTTATACTCCCTCCATTCCAAAATA 57.655 34.615 0.00 0.00 0.00 1.40
1510 3414 8.960064 ACTTATACTCCCTCCATTCCAAAATAT 58.040 33.333 0.00 0.00 0.00 1.28
1513 3417 6.848562 ACTCCCTCCATTCCAAAATATAGT 57.151 37.500 0.00 0.00 0.00 2.12
1514 3418 6.605119 ACTCCCTCCATTCCAAAATATAGTG 58.395 40.000 0.00 0.00 0.00 2.74
1515 3419 5.385198 TCCCTCCATTCCAAAATATAGTGC 58.615 41.667 0.00 0.00 0.00 4.40
1516 3420 4.216257 CCCTCCATTCCAAAATATAGTGCG 59.784 45.833 0.00 0.00 0.00 5.34
1517 3421 4.320494 CCTCCATTCCAAAATATAGTGCGC 60.320 45.833 0.00 0.00 0.00 6.09
1518 3422 3.568007 TCCATTCCAAAATATAGTGCGCC 59.432 43.478 4.18 0.00 0.00 6.53
1519 3423 3.305335 CCATTCCAAAATATAGTGCGCCC 60.305 47.826 4.18 0.00 0.00 6.13
1520 3424 1.588674 TCCAAAATATAGTGCGCCCG 58.411 50.000 4.18 0.00 0.00 6.13
1521 3425 0.040425 CCAAAATATAGTGCGCCCGC 60.040 55.000 4.18 5.60 42.35 6.13
1522 3426 0.384230 CAAAATATAGTGCGCCCGCG 60.384 55.000 4.18 4.36 45.51 6.46
1536 3440 4.771356 CGCGCTTTCCGAGGTCGA 62.771 66.667 5.56 0.00 43.02 4.20
1537 3441 2.431942 GCGCTTTCCGAGGTCGAA 60.432 61.111 0.00 0.00 43.02 3.71
1538 3442 2.727684 GCGCTTTCCGAGGTCGAAC 61.728 63.158 0.00 0.00 43.02 3.95
1539 3443 1.080705 CGCTTTCCGAGGTCGAACT 60.081 57.895 0.34 0.34 43.02 3.01
1540 3444 0.666577 CGCTTTCCGAGGTCGAACTT 60.667 55.000 3.47 0.00 43.02 2.66
1541 3445 1.509703 GCTTTCCGAGGTCGAACTTT 58.490 50.000 3.47 0.00 43.02 2.66
1542 3446 1.194772 GCTTTCCGAGGTCGAACTTTG 59.805 52.381 3.47 0.00 43.02 2.77
1543 3447 2.750948 CTTTCCGAGGTCGAACTTTGA 58.249 47.619 3.47 0.91 43.02 2.69
1544 3448 2.144482 TTCCGAGGTCGAACTTTGAC 57.856 50.000 3.47 0.86 43.02 3.18
1557 3461 8.142348 GTCGAACTTTGACCATAAATTTAACG 57.858 34.615 1.21 0.00 0.00 3.18
1558 3462 8.011106 GTCGAACTTTGACCATAAATTTAACGA 58.989 33.333 1.21 0.00 0.00 3.85
1559 3463 8.557864 TCGAACTTTGACCATAAATTTAACGAA 58.442 29.630 1.21 1.12 0.00 3.85
1560 3464 8.624028 CGAACTTTGACCATAAATTTAACGAAC 58.376 33.333 1.21 0.00 0.00 3.95
1561 3465 8.496872 AACTTTGACCATAAATTTAACGAACG 57.503 30.769 1.21 0.00 0.00 3.95
1562 3466 7.863666 ACTTTGACCATAAATTTAACGAACGA 58.136 30.769 1.21 0.00 0.00 3.85
1563 3467 8.013378 ACTTTGACCATAAATTTAACGAACGAG 58.987 33.333 1.21 0.01 0.00 4.18
1564 3468 7.655236 TTGACCATAAATTTAACGAACGAGA 57.345 32.000 1.21 0.00 0.00 4.04
1565 3469 7.052565 TGACCATAAATTTAACGAACGAGAC 57.947 36.000 1.21 0.00 0.00 3.36
1566 3470 6.091169 TGACCATAAATTTAACGAACGAGACC 59.909 38.462 1.21 0.00 0.00 3.85
1567 3471 5.062558 ACCATAAATTTAACGAACGAGACCG 59.937 40.000 1.21 0.00 42.50 4.79
1568 3472 5.289193 CCATAAATTTAACGAACGAGACCGA 59.711 40.000 1.21 0.00 39.50 4.69
1569 3473 4.635961 AAATTTAACGAACGAGACCGAC 57.364 40.909 0.14 0.00 39.50 4.79
1570 3474 3.565905 ATTTAACGAACGAGACCGACT 57.434 42.857 0.14 0.00 39.50 4.18
1571 3475 2.320805 TTAACGAACGAGACCGACTG 57.679 50.000 0.14 0.00 39.50 3.51
1572 3476 0.110056 TAACGAACGAGACCGACTGC 60.110 55.000 0.14 0.00 39.50 4.40
1573 3477 2.870161 CGAACGAGACCGACTGCG 60.870 66.667 0.00 0.00 39.50 5.18
1583 3487 2.739287 CGACTGCGGCGGGTAAAA 60.739 61.111 14.26 0.00 0.00 1.52
1584 3488 2.319096 CGACTGCGGCGGGTAAAAA 61.319 57.895 14.26 0.00 0.00 1.94
1639 3543 9.722056 ACGAATTCACTGATATAATTTTTGCTC 57.278 29.630 6.22 0.00 0.00 4.26
1640 3544 9.173939 CGAATTCACTGATATAATTTTTGCTCC 57.826 33.333 6.22 0.00 0.00 4.70
1641 3545 9.468532 GAATTCACTGATATAATTTTTGCTCCC 57.531 33.333 0.00 0.00 0.00 4.30
1642 3546 6.618287 TCACTGATATAATTTTTGCTCCCG 57.382 37.500 0.00 0.00 0.00 5.14
1643 3547 5.008613 TCACTGATATAATTTTTGCTCCCGC 59.991 40.000 0.00 0.00 0.00 6.13
1644 3548 4.278419 ACTGATATAATTTTTGCTCCCGCC 59.722 41.667 0.00 0.00 34.43 6.13
1645 3549 3.252215 TGATATAATTTTTGCTCCCGCCG 59.748 43.478 0.00 0.00 34.43 6.46
1646 3550 0.102300 ATAATTTTTGCTCCCGCCGC 59.898 50.000 0.00 0.00 34.43 6.53
1647 3551 1.244697 TAATTTTTGCTCCCGCCGCA 61.245 50.000 0.00 0.00 35.22 5.69
1648 3552 2.093537 AATTTTTGCTCCCGCCGCAA 62.094 50.000 0.00 0.00 44.83 4.85
1649 3553 1.887344 ATTTTTGCTCCCGCCGCAAT 61.887 50.000 5.33 0.00 45.67 3.56
1650 3554 2.485188 TTTTTGCTCCCGCCGCAATC 62.485 55.000 5.33 0.00 45.67 2.67
1666 3570 5.712217 CGCAATCGGTCTTGATAGTTAAA 57.288 39.130 0.00 0.00 0.00 1.52
1667 3571 6.287107 CGCAATCGGTCTTGATAGTTAAAT 57.713 37.500 0.00 0.00 0.00 1.40
1668 3572 6.715464 CGCAATCGGTCTTGATAGTTAAATT 58.285 36.000 0.00 0.00 0.00 1.82
1669 3573 7.186804 CGCAATCGGTCTTGATAGTTAAATTT 58.813 34.615 0.00 0.00 0.00 1.82
1670 3574 8.332464 CGCAATCGGTCTTGATAGTTAAATTTA 58.668 33.333 0.00 0.00 0.00 1.40
1674 3578 9.847224 ATCGGTCTTGATAGTTAAATTTATGGT 57.153 29.630 0.00 0.00 0.00 3.55
1675 3579 9.321562 TCGGTCTTGATAGTTAAATTTATGGTC 57.678 33.333 0.00 0.00 0.00 4.02
1676 3580 9.104965 CGGTCTTGATAGTTAAATTTATGGTCA 57.895 33.333 0.00 0.00 0.00 4.02
1686 3590 8.088365 AGTTAAATTTATGGTCAAGGTTGAAGC 58.912 33.333 0.00 0.00 39.21 3.86
1687 3591 4.701956 ATTTATGGTCAAGGTTGAAGCG 57.298 40.909 0.00 0.00 39.21 4.68
1688 3592 1.448985 TATGGTCAAGGTTGAAGCGC 58.551 50.000 0.00 0.00 39.21 5.92
1689 3593 1.577328 ATGGTCAAGGTTGAAGCGCG 61.577 55.000 0.00 0.00 39.21 6.86
1690 3594 2.556287 GTCAAGGTTGAAGCGCGG 59.444 61.111 8.83 0.00 39.21 6.46
1691 3595 1.959226 GTCAAGGTTGAAGCGCGGA 60.959 57.895 8.83 0.00 39.21 5.54
1692 3596 1.227704 TCAAGGTTGAAGCGCGGAA 60.228 52.632 8.83 0.00 33.55 4.30
1693 3597 0.816018 TCAAGGTTGAAGCGCGGAAA 60.816 50.000 8.83 0.00 33.55 3.13
1694 3598 0.240945 CAAGGTTGAAGCGCGGAAAT 59.759 50.000 8.83 0.00 0.00 2.17
1695 3599 1.466950 CAAGGTTGAAGCGCGGAAATA 59.533 47.619 8.83 0.00 0.00 1.40
1696 3600 1.369625 AGGTTGAAGCGCGGAAATAG 58.630 50.000 8.83 0.00 0.00 1.73
1697 3601 1.066430 AGGTTGAAGCGCGGAAATAGA 60.066 47.619 8.83 0.00 0.00 1.98
1698 3602 1.327764 GGTTGAAGCGCGGAAATAGAG 59.672 52.381 8.83 0.00 0.00 2.43
1699 3603 1.327764 GTTGAAGCGCGGAAATAGAGG 59.672 52.381 8.83 0.00 0.00 3.69
1700 3604 0.821517 TGAAGCGCGGAAATAGAGGA 59.178 50.000 8.83 0.00 0.00 3.71
1701 3605 1.206132 TGAAGCGCGGAAATAGAGGAA 59.794 47.619 8.83 0.00 0.00 3.36
1702 3606 1.861575 GAAGCGCGGAAATAGAGGAAG 59.138 52.381 8.83 0.00 0.00 3.46
1703 3607 0.530870 AGCGCGGAAATAGAGGAAGC 60.531 55.000 8.83 0.00 0.00 3.86
1704 3608 0.810031 GCGCGGAAATAGAGGAAGCA 60.810 55.000 8.83 0.00 0.00 3.91
1705 3609 0.931005 CGCGGAAATAGAGGAAGCAC 59.069 55.000 0.00 0.00 0.00 4.40
1706 3610 1.471676 CGCGGAAATAGAGGAAGCACT 60.472 52.381 0.00 0.00 0.00 4.40
1707 3611 2.223735 CGCGGAAATAGAGGAAGCACTA 60.224 50.000 0.00 0.00 0.00 2.74
1708 3612 3.124560 GCGGAAATAGAGGAAGCACTAC 58.875 50.000 0.00 0.00 0.00 2.73
1709 3613 3.430374 GCGGAAATAGAGGAAGCACTACA 60.430 47.826 0.00 0.00 0.00 2.74
1710 3614 4.740934 GCGGAAATAGAGGAAGCACTACAT 60.741 45.833 0.00 0.00 0.00 2.29
1711 3615 5.360591 CGGAAATAGAGGAAGCACTACATT 58.639 41.667 0.00 0.00 0.00 2.71
1712 3616 6.513180 CGGAAATAGAGGAAGCACTACATTA 58.487 40.000 0.00 0.00 0.00 1.90
1713 3617 7.155328 CGGAAATAGAGGAAGCACTACATTAT 58.845 38.462 0.00 0.00 0.00 1.28
1714 3618 7.116948 CGGAAATAGAGGAAGCACTACATTATG 59.883 40.741 0.00 0.00 0.00 1.90
1715 3619 8.150945 GGAAATAGAGGAAGCACTACATTATGA 58.849 37.037 0.00 0.00 0.00 2.15
1716 3620 9.547753 GAAATAGAGGAAGCACTACATTATGAA 57.452 33.333 0.00 0.00 0.00 2.57
1717 3621 9.905713 AAATAGAGGAAGCACTACATTATGAAA 57.094 29.630 0.00 0.00 0.00 2.69
1718 3622 8.894768 ATAGAGGAAGCACTACATTATGAAAC 57.105 34.615 0.00 0.00 0.00 2.78
1719 3623 5.812642 AGAGGAAGCACTACATTATGAAACG 59.187 40.000 0.00 0.00 0.00 3.60
1720 3624 4.876107 AGGAAGCACTACATTATGAAACGG 59.124 41.667 0.00 0.00 0.00 4.44
1721 3625 4.873827 GGAAGCACTACATTATGAAACGGA 59.126 41.667 0.00 0.00 0.00 4.69
1722 3626 5.006746 GGAAGCACTACATTATGAAACGGAG 59.993 44.000 0.00 0.00 0.00 4.63
1723 3627 4.442706 AGCACTACATTATGAAACGGAGG 58.557 43.478 0.00 0.00 0.00 4.30
1724 3628 3.560068 GCACTACATTATGAAACGGAGGG 59.440 47.826 0.00 0.00 0.00 4.30
1725 3629 4.682320 GCACTACATTATGAAACGGAGGGA 60.682 45.833 0.00 0.00 0.00 4.20
1726 3630 5.050490 CACTACATTATGAAACGGAGGGAG 58.950 45.833 0.00 0.00 0.00 4.30
1739 3643 6.819947 AACGGAGGGAGTATTAATTTACCT 57.180 37.500 3.66 3.66 0.00 3.08
1782 3687 6.642707 TGTAATCGGTGTCTTTCCAAAAAT 57.357 33.333 0.00 0.00 0.00 1.82
1785 3690 5.782893 ATCGGTGTCTTTCCAAAAATGAA 57.217 34.783 0.00 0.00 0.00 2.57
1788 3693 5.808030 TCGGTGTCTTTCCAAAAATGAAAAC 59.192 36.000 0.00 0.00 31.77 2.43
1790 3695 6.091441 CGGTGTCTTTCCAAAAATGAAAACAA 59.909 34.615 0.00 0.00 31.77 2.83
1832 3741 5.645497 TCGTACCACTTAGAAGGTAAGAGAC 59.355 44.000 15.16 5.06 41.68 3.36
1882 3791 4.892934 AGACAGCTAAAATTGTTTGGGACA 59.107 37.500 0.00 0.00 36.19 4.02
1961 3872 0.745845 GCGCTGGGTCAATGATGTCT 60.746 55.000 0.00 0.00 0.00 3.41
2048 3959 2.389059 CTAACCGCTGATGTGATCTCG 58.611 52.381 0.00 0.00 0.00 4.04
2710 4639 3.015327 GCTGTCATTCAGAGAAAGGCAT 58.985 45.455 0.00 0.00 46.27 4.40
3059 4988 0.853530 GGGCTTCCCATGGTCCTTAT 59.146 55.000 11.73 0.00 44.65 1.73
3126 5064 9.941325 TTTTTATTGGTCTCATTGCAAATGTAT 57.059 25.926 1.71 0.00 0.00 2.29
3415 5523 8.817092 AAGCCTAAGCATATAGGTTGTAAAAA 57.183 30.769 10.73 0.00 43.72 1.94
3429 5537 5.458779 GGTTGTAAAAACATTGACTCACTGC 59.541 40.000 0.00 0.00 0.00 4.40
3567 5676 4.450976 TCATGGGATTTGGTTCTATCACG 58.549 43.478 0.00 0.00 0.00 4.35
3629 5738 9.759473 CAATCTCTATTTGTTCCCCCAATATAT 57.241 33.333 0.00 0.00 0.00 0.86
3702 5833 6.830324 ACATATGTGCAACCAATCTTCATACT 59.170 34.615 7.78 0.00 34.36 2.12
3703 5834 7.992608 ACATATGTGCAACCAATCTTCATACTA 59.007 33.333 7.78 0.00 34.36 1.82
3704 5835 9.006839 CATATGTGCAACCAATCTTCATACTAT 57.993 33.333 0.00 0.00 34.36 2.12
3705 5836 7.886629 ATGTGCAACCAATCTTCATACTATT 57.113 32.000 0.00 0.00 34.36 1.73
3706 5837 7.701539 TGTGCAACCAATCTTCATACTATTT 57.298 32.000 0.00 0.00 34.36 1.40
3707 5838 8.121305 TGTGCAACCAATCTTCATACTATTTT 57.879 30.769 0.00 0.00 34.36 1.82
3708 5839 8.028354 TGTGCAACCAATCTTCATACTATTTTG 58.972 33.333 0.00 0.00 34.36 2.44
3709 5840 8.243426 GTGCAACCAATCTTCATACTATTTTGA 58.757 33.333 0.00 0.00 0.00 2.69
3710 5841 8.243426 TGCAACCAATCTTCATACTATTTTGAC 58.757 33.333 0.00 0.00 0.00 3.18
3711 5842 8.243426 GCAACCAATCTTCATACTATTTTGACA 58.757 33.333 0.00 0.00 0.00 3.58
3718 5849 8.771920 TCTTCATACTATTTTGACAATGTCGT 57.228 30.769 9.00 2.01 34.95 4.34
3719 5850 9.863845 TCTTCATACTATTTTGACAATGTCGTA 57.136 29.630 9.00 4.20 34.95 3.43
3721 5852 9.863845 TTCATACTATTTTGACAATGTCGTAGA 57.136 29.630 9.00 0.00 34.95 2.59
3722 5853 9.863845 TCATACTATTTTGACAATGTCGTAGAA 57.136 29.630 9.00 1.49 39.69 2.10
3723 5854 9.901724 CATACTATTTTGACAATGTCGTAGAAC 57.098 33.333 9.00 0.00 39.69 3.01
3865 5996 3.893326 TGAGGAAGATGCGATGAAAGA 57.107 42.857 0.00 0.00 0.00 2.52
3903 6034 2.227388 CTGATGTTGGTGCTCCTGAAAC 59.773 50.000 6.34 3.16 34.23 2.78
3918 6049 2.054140 GAAACTGTTTCGGCACCGCA 62.054 55.000 16.61 0.00 39.59 5.69
3959 6090 3.118811 TCCTCTTTGGTTTTTGTTGGCTG 60.119 43.478 0.00 0.00 37.07 4.85
4012 6143 4.494091 TTGGAGCTATCTTTTGGGAGAG 57.506 45.455 0.00 0.00 0.00 3.20
4019 6150 7.061566 AGCTATCTTTTGGGAGAGACTATTC 57.938 40.000 0.00 0.00 0.00 1.75
4026 6157 3.581101 TGGGAGAGACTATTCTGGATGG 58.419 50.000 0.00 0.00 29.47 3.51
4027 6158 3.051803 TGGGAGAGACTATTCTGGATGGT 60.052 47.826 0.00 0.00 29.47 3.55
4063 6194 8.525876 CACATCAACACTATTTCATTAATTGCG 58.474 33.333 0.00 0.00 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.815613 TCCCACCGCACAACATAAATG 59.184 47.619 0.00 0.00 0.00 2.32
9 10 2.091541 CTCCCACCGCACAACATAAAT 58.908 47.619 0.00 0.00 0.00 1.40
10 11 1.529226 CTCCCACCGCACAACATAAA 58.471 50.000 0.00 0.00 0.00 1.40
11 12 0.322098 CCTCCCACCGCACAACATAA 60.322 55.000 0.00 0.00 0.00 1.90
12 13 1.298340 CCTCCCACCGCACAACATA 59.702 57.895 0.00 0.00 0.00 2.29
13 14 1.485294 TACCTCCCACCGCACAACAT 61.485 55.000 0.00 0.00 0.00 2.71
14 15 2.107041 CTACCTCCCACCGCACAACA 62.107 60.000 0.00 0.00 0.00 3.33
15 16 1.375523 CTACCTCCCACCGCACAAC 60.376 63.158 0.00 0.00 0.00 3.32
16 17 2.589157 CCTACCTCCCACCGCACAA 61.589 63.158 0.00 0.00 0.00 3.33
17 18 3.000819 CCTACCTCCCACCGCACA 61.001 66.667 0.00 0.00 0.00 4.57
18 19 3.001406 ACCTACCTCCCACCGCAC 61.001 66.667 0.00 0.00 0.00 5.34
19 20 3.000819 CACCTACCTCCCACCGCA 61.001 66.667 0.00 0.00 0.00 5.69
20 21 3.782443 CCACCTACCTCCCACCGC 61.782 72.222 0.00 0.00 0.00 5.68
21 22 3.782443 GCCACCTACCTCCCACCG 61.782 72.222 0.00 0.00 0.00 4.94
22 23 3.408853 GGCCACCTACCTCCCACC 61.409 72.222 0.00 0.00 0.00 4.61
23 24 3.782443 CGGCCACCTACCTCCCAC 61.782 72.222 2.24 0.00 0.00 4.61
27 28 4.162690 CAGGCGGCCACCTACCTC 62.163 72.222 23.09 0.00 38.26 3.85
53 54 3.390017 CGCTCGTCCGCATCGATG 61.390 66.667 21.27 21.27 36.73 3.84
54 55 3.583086 TCGCTCGTCCGCATCGAT 61.583 61.111 0.00 0.00 36.73 3.59
55 56 4.531912 GTCGCTCGTCCGCATCGA 62.532 66.667 0.00 0.00 35.96 3.59
73 74 1.828331 GACGGACAGCAAACGGACAC 61.828 60.000 0.00 0.00 0.00 3.67
74 75 1.593209 GACGGACAGCAAACGGACA 60.593 57.895 0.00 0.00 0.00 4.02
75 76 0.038892 TAGACGGACAGCAAACGGAC 60.039 55.000 0.00 0.00 0.00 4.79
76 77 0.242825 CTAGACGGACAGCAAACGGA 59.757 55.000 0.00 0.00 0.00 4.69
77 78 0.242825 TCTAGACGGACAGCAAACGG 59.757 55.000 0.00 0.00 0.00 4.44
78 79 2.186076 GATCTAGACGGACAGCAAACG 58.814 52.381 0.00 0.00 0.00 3.60
79 80 2.094182 TGGATCTAGACGGACAGCAAAC 60.094 50.000 0.00 0.00 0.00 2.93
80 81 2.176045 TGGATCTAGACGGACAGCAAA 58.824 47.619 0.00 0.00 0.00 3.68
81 82 1.847328 TGGATCTAGACGGACAGCAA 58.153 50.000 0.00 0.00 0.00 3.91
82 83 1.847328 TTGGATCTAGACGGACAGCA 58.153 50.000 0.00 0.00 0.00 4.41
83 84 2.541556 GTTTGGATCTAGACGGACAGC 58.458 52.381 0.00 0.00 0.00 4.40
84 85 2.479730 CGGTTTGGATCTAGACGGACAG 60.480 54.545 0.00 0.00 0.00 3.51
85 86 1.475280 CGGTTTGGATCTAGACGGACA 59.525 52.381 0.00 0.00 0.00 4.02
86 87 1.747355 TCGGTTTGGATCTAGACGGAC 59.253 52.381 6.02 0.00 0.00 4.79
87 88 2.133281 TCGGTTTGGATCTAGACGGA 57.867 50.000 6.02 6.02 0.00 4.69
88 89 2.094390 TGTTCGGTTTGGATCTAGACGG 60.094 50.000 0.00 1.68 0.00 4.79
89 90 3.226346 TGTTCGGTTTGGATCTAGACG 57.774 47.619 0.00 0.00 0.00 4.18
90 91 4.330074 CACATGTTCGGTTTGGATCTAGAC 59.670 45.833 0.00 0.00 0.00 2.59
91 92 4.020573 ACACATGTTCGGTTTGGATCTAGA 60.021 41.667 0.00 0.00 0.00 2.43
92 93 4.253685 ACACATGTTCGGTTTGGATCTAG 58.746 43.478 0.00 0.00 0.00 2.43
93 94 4.280436 ACACATGTTCGGTTTGGATCTA 57.720 40.909 0.00 0.00 0.00 1.98
94 95 3.140325 ACACATGTTCGGTTTGGATCT 57.860 42.857 0.00 0.00 0.00 2.75
95 96 3.004315 ACAACACATGTTCGGTTTGGATC 59.996 43.478 0.00 0.00 40.06 3.36
96 97 2.955660 ACAACACATGTTCGGTTTGGAT 59.044 40.909 0.00 0.00 40.06 3.41
97 98 2.098280 CACAACACATGTTCGGTTTGGA 59.902 45.455 0.00 0.00 41.46 3.53
98 99 2.458951 CACAACACATGTTCGGTTTGG 58.541 47.619 0.00 0.00 41.46 3.28
99 100 1.851666 GCACAACACATGTTCGGTTTG 59.148 47.619 0.00 0.00 41.46 2.93
100 101 1.748493 AGCACAACACATGTTCGGTTT 59.252 42.857 0.00 0.00 41.46 3.27
101 102 1.333619 GAGCACAACACATGTTCGGTT 59.666 47.619 0.00 0.00 41.46 4.44
102 103 0.944386 GAGCACAACACATGTTCGGT 59.056 50.000 0.00 0.00 41.46 4.69
103 104 0.110688 CGAGCACAACACATGTTCGG 60.111 55.000 0.00 0.00 44.19 4.30
104 105 3.349972 CGAGCACAACACATGTTCG 57.650 52.632 0.00 0.00 41.46 3.95
105 106 3.332761 TTTCGAGCACAACACATGTTC 57.667 42.857 0.00 0.00 41.46 3.18
106 107 3.550639 CCATTTCGAGCACAACACATGTT 60.551 43.478 0.00 0.00 41.46 2.71
107 108 2.030893 CCATTTCGAGCACAACACATGT 60.031 45.455 0.00 0.00 45.34 3.21
108 109 2.587956 CCATTTCGAGCACAACACATG 58.412 47.619 0.00 0.00 0.00 3.21
109 110 1.541147 CCCATTTCGAGCACAACACAT 59.459 47.619 0.00 0.00 0.00 3.21
110 111 0.950836 CCCATTTCGAGCACAACACA 59.049 50.000 0.00 0.00 0.00 3.72
111 112 0.951558 ACCCATTTCGAGCACAACAC 59.048 50.000 0.00 0.00 0.00 3.32
112 113 1.234821 GACCCATTTCGAGCACAACA 58.765 50.000 0.00 0.00 0.00 3.33
113 114 0.165944 CGACCCATTTCGAGCACAAC 59.834 55.000 0.00 0.00 41.78 3.32
114 115 0.953471 CCGACCCATTTCGAGCACAA 60.953 55.000 0.00 0.00 41.78 3.33
115 116 1.375396 CCGACCCATTTCGAGCACA 60.375 57.895 0.00 0.00 41.78 4.57
116 117 1.079405 TCCGACCCATTTCGAGCAC 60.079 57.895 0.00 0.00 41.78 4.40
117 118 1.079405 GTCCGACCCATTTCGAGCA 60.079 57.895 0.00 0.00 41.78 4.26
118 119 1.814169 GGTCCGACCCATTTCGAGC 60.814 63.158 6.25 0.00 41.78 5.03
119 120 1.518572 CGGTCCGACCCATTTCGAG 60.519 63.158 4.91 0.00 41.78 4.04
120 121 2.574929 CGGTCCGACCCATTTCGA 59.425 61.111 4.91 0.00 41.78 3.71
121 122 2.510691 CCGGTCCGACCCATTTCG 60.511 66.667 14.39 0.00 33.75 3.46
122 123 1.449070 GTCCGGTCCGACCCATTTC 60.449 63.158 14.39 0.00 33.75 2.17
123 124 2.218454 TGTCCGGTCCGACCCATTT 61.218 57.895 14.39 0.00 33.75 2.32
124 125 2.605295 TGTCCGGTCCGACCCATT 60.605 61.111 14.39 0.00 33.75 3.16
125 126 3.387947 GTGTCCGGTCCGACCCAT 61.388 66.667 14.39 0.00 33.75 4.00
126 127 4.918278 TGTGTCCGGTCCGACCCA 62.918 66.667 14.39 3.93 33.75 4.51
127 128 2.663423 TTTTGTGTCCGGTCCGACCC 62.663 60.000 14.39 1.14 33.75 4.46
128 129 1.227615 TTTTGTGTCCGGTCCGACC 60.228 57.895 14.39 7.59 34.05 4.79
129 130 1.824272 CGTTTTGTGTCCGGTCCGAC 61.824 60.000 14.39 9.76 0.00 4.79
130 131 1.592131 CGTTTTGTGTCCGGTCCGA 60.592 57.895 14.39 0.00 0.00 4.55
131 132 2.600475 CCGTTTTGTGTCCGGTCCG 61.600 63.158 3.60 3.60 37.00 4.79
132 133 1.227615 TCCGTTTTGTGTCCGGTCC 60.228 57.895 0.00 0.00 42.30 4.46
133 134 0.810823 TGTCCGTTTTGTGTCCGGTC 60.811 55.000 0.00 0.00 42.30 4.79
134 135 0.392729 TTGTCCGTTTTGTGTCCGGT 60.393 50.000 0.00 0.00 42.30 5.28
135 136 0.306533 CTTGTCCGTTTTGTGTCCGG 59.693 55.000 0.00 0.00 43.03 5.14
136 137 1.292061 TCTTGTCCGTTTTGTGTCCG 58.708 50.000 0.00 0.00 0.00 4.79
137 138 2.031157 CCATCTTGTCCGTTTTGTGTCC 60.031 50.000 0.00 0.00 0.00 4.02
138 139 2.616842 ACCATCTTGTCCGTTTTGTGTC 59.383 45.455 0.00 0.00 0.00 3.67
139 140 2.616842 GACCATCTTGTCCGTTTTGTGT 59.383 45.455 0.00 0.00 0.00 3.72
140 141 2.031157 GGACCATCTTGTCCGTTTTGTG 60.031 50.000 0.00 0.00 44.98 3.33
141 142 2.227194 GGACCATCTTGTCCGTTTTGT 58.773 47.619 0.00 0.00 44.98 2.83
142 143 2.989422 GGACCATCTTGTCCGTTTTG 57.011 50.000 0.00 0.00 44.98 2.44
149 150 0.257039 ATGCCCTGGACCATCTTGTC 59.743 55.000 0.00 0.00 34.42 3.18
150 151 0.257039 GATGCCCTGGACCATCTTGT 59.743 55.000 15.61 0.00 35.96 3.16
151 152 0.816825 CGATGCCCTGGACCATCTTG 60.817 60.000 18.61 6.72 36.55 3.02
152 153 1.528824 CGATGCCCTGGACCATCTT 59.471 57.895 18.61 0.00 36.55 2.40
153 154 3.112205 GCGATGCCCTGGACCATCT 62.112 63.158 18.61 0.00 36.55 2.90
154 155 2.592861 GCGATGCCCTGGACCATC 60.593 66.667 13.85 13.85 35.61 3.51
155 156 4.552365 CGCGATGCCCTGGACCAT 62.552 66.667 0.00 0.00 0.00 3.55
173 174 3.897681 TAGACCTCACGGCCCAGCA 62.898 63.158 0.00 0.00 0.00 4.41
174 175 2.370647 GATAGACCTCACGGCCCAGC 62.371 65.000 0.00 0.00 0.00 4.85
175 176 1.742768 GATAGACCTCACGGCCCAG 59.257 63.158 0.00 0.00 0.00 4.45
176 177 1.760875 GGATAGACCTCACGGCCCA 60.761 63.158 0.00 0.00 35.41 5.36
177 178 2.857744 CGGATAGACCTCACGGCCC 61.858 68.421 0.00 0.00 36.31 5.80
178 179 1.673808 AACGGATAGACCTCACGGCC 61.674 60.000 0.00 0.00 36.31 6.13
179 180 0.175073 AAACGGATAGACCTCACGGC 59.825 55.000 0.00 0.00 36.31 5.68
180 181 2.268298 CAAAACGGATAGACCTCACGG 58.732 52.381 0.00 0.00 36.31 4.94
181 182 1.659098 GCAAAACGGATAGACCTCACG 59.341 52.381 0.00 0.00 36.31 4.35
182 183 2.007608 GGCAAAACGGATAGACCTCAC 58.992 52.381 0.00 0.00 36.31 3.51
183 184 1.065709 GGGCAAAACGGATAGACCTCA 60.066 52.381 0.00 0.00 36.31 3.86
184 185 1.209747 AGGGCAAAACGGATAGACCTC 59.790 52.381 0.00 0.00 36.31 3.85
185 186 1.286248 AGGGCAAAACGGATAGACCT 58.714 50.000 0.00 0.00 36.31 3.85
186 187 2.994186 TAGGGCAAAACGGATAGACC 57.006 50.000 0.00 0.00 0.00 3.85
187 188 4.611310 GTTTAGGGCAAAACGGATAGAC 57.389 45.455 0.00 0.00 30.30 2.59
195 196 0.662077 CCGTGCGTTTAGGGCAAAAC 60.662 55.000 5.00 5.00 42.92 2.43
196 197 1.655329 CCGTGCGTTTAGGGCAAAA 59.345 52.632 0.00 0.00 42.92 2.44
197 198 2.262303 CCCGTGCGTTTAGGGCAAA 61.262 57.895 0.00 0.00 42.92 3.68
198 199 2.670251 CCCGTGCGTTTAGGGCAA 60.670 61.111 0.00 0.00 42.92 4.52
199 200 4.708386 CCCCGTGCGTTTAGGGCA 62.708 66.667 0.00 0.00 43.74 5.36
209 210 4.875713 ATTCATCCGGCCCCGTGC 62.876 66.667 5.93 0.00 37.81 5.34
210 211 2.901840 CATTCATCCGGCCCCGTG 60.902 66.667 5.93 0.00 37.81 4.94
211 212 4.189580 CCATTCATCCGGCCCCGT 62.190 66.667 5.93 0.00 37.81 5.28
212 213 4.954970 CCCATTCATCCGGCCCCG 62.955 72.222 0.00 0.00 39.44 5.73
213 214 4.603535 CCCCATTCATCCGGCCCC 62.604 72.222 0.00 0.00 0.00 5.80
214 215 3.792185 GACCCCATTCATCCGGCCC 62.792 68.421 0.00 0.00 0.00 5.80
215 216 2.203351 GACCCCATTCATCCGGCC 60.203 66.667 0.00 0.00 0.00 6.13
216 217 1.823899 GTGACCCCATTCATCCGGC 60.824 63.158 0.00 0.00 0.00 6.13
217 218 1.523711 CGTGACCCCATTCATCCGG 60.524 63.158 0.00 0.00 0.00 5.14
218 219 2.180204 GCGTGACCCCATTCATCCG 61.180 63.158 0.00 0.00 0.00 4.18
219 220 2.180204 CGCGTGACCCCATTCATCC 61.180 63.158 0.00 0.00 0.00 3.51
220 221 2.823829 GCGCGTGACCCCATTCATC 61.824 63.158 8.43 0.00 0.00 2.92
221 222 2.824041 GCGCGTGACCCCATTCAT 60.824 61.111 8.43 0.00 0.00 2.57
222 223 4.015406 AGCGCGTGACCCCATTCA 62.015 61.111 8.43 0.00 0.00 2.57
223 224 3.499737 CAGCGCGTGACCCCATTC 61.500 66.667 8.43 0.00 0.00 2.67
228 229 4.681978 AACTCCAGCGCGTGACCC 62.682 66.667 8.43 0.00 0.00 4.46
229 230 3.414700 CAACTCCAGCGCGTGACC 61.415 66.667 8.43 0.00 0.00 4.02
230 231 3.414700 CCAACTCCAGCGCGTGAC 61.415 66.667 8.43 0.00 0.00 3.67
234 235 3.950794 TAAGGCCAACTCCAGCGCG 62.951 63.158 5.01 0.00 0.00 6.86
235 236 1.674322 TTAAGGCCAACTCCAGCGC 60.674 57.895 5.01 0.00 0.00 5.92
236 237 0.605319 TGTTAAGGCCAACTCCAGCG 60.605 55.000 5.01 0.00 0.00 5.18
237 238 1.168714 CTGTTAAGGCCAACTCCAGC 58.831 55.000 5.01 0.00 0.00 4.85
238 239 1.826385 CCTGTTAAGGCCAACTCCAG 58.174 55.000 5.01 3.91 36.56 3.86
249 250 1.920574 CGACATGTCTCGCCTGTTAAG 59.079 52.381 22.95 0.00 0.00 1.85
250 251 1.271379 ACGACATGTCTCGCCTGTTAA 59.729 47.619 22.95 0.00 37.15 2.01
251 252 0.885879 ACGACATGTCTCGCCTGTTA 59.114 50.000 22.95 0.00 37.15 2.41
252 253 0.667487 CACGACATGTCTCGCCTGTT 60.667 55.000 22.95 0.00 37.15 3.16
253 254 1.080501 CACGACATGTCTCGCCTGT 60.081 57.895 22.95 9.85 37.15 4.00
254 255 1.807165 CCACGACATGTCTCGCCTG 60.807 63.158 22.95 9.22 37.15 4.85
255 256 0.963856 TACCACGACATGTCTCGCCT 60.964 55.000 22.95 4.95 37.15 5.52
256 257 0.102481 ATACCACGACATGTCTCGCC 59.898 55.000 22.95 0.00 37.15 5.54
257 258 1.200483 CATACCACGACATGTCTCGC 58.800 55.000 22.95 0.00 37.15 5.03
258 259 2.561733 ACATACCACGACATGTCTCG 57.438 50.000 22.95 14.27 39.68 4.04
259 260 3.736252 GCATACATACCACGACATGTCTC 59.264 47.826 22.95 0.00 36.74 3.36
260 261 3.717707 GCATACATACCACGACATGTCT 58.282 45.455 22.95 7.39 36.74 3.41
261 262 2.471370 CGCATACATACCACGACATGTC 59.529 50.000 16.21 16.21 36.74 3.06
262 263 2.100087 TCGCATACATACCACGACATGT 59.900 45.455 0.00 0.00 38.81 3.21
263 264 2.738135 TCGCATACATACCACGACATG 58.262 47.619 0.00 0.00 0.00 3.21
275 276 1.813337 CGGCACCATGTCGCATACA 60.813 57.895 6.00 0.00 39.15 2.29
276 277 3.014036 CGGCACCATGTCGCATAC 58.986 61.111 6.00 0.00 39.15 2.39
282 283 2.897350 GGCTAGCGGCACCATGTC 60.897 66.667 9.00 0.00 44.01 3.06
283 284 4.838152 CGGCTAGCGGCACCATGT 62.838 66.667 9.00 0.00 44.01 3.21
284 285 3.439513 TACGGCTAGCGGCACCATG 62.440 63.158 21.08 0.49 44.01 3.66
285 286 3.151710 TACGGCTAGCGGCACCAT 61.152 61.111 21.08 5.01 44.01 3.55
286 287 3.833645 CTACGGCTAGCGGCACCA 61.834 66.667 21.08 4.57 44.01 4.17
287 288 4.587189 CCTACGGCTAGCGGCACC 62.587 72.222 21.08 0.00 44.01 5.01
288 289 3.486252 CTCCTACGGCTAGCGGCAC 62.486 68.421 21.08 0.22 44.01 5.01
289 290 3.217017 CTCCTACGGCTAGCGGCA 61.217 66.667 21.08 8.58 44.01 5.69
290 291 3.979739 CCTCCTACGGCTAGCGGC 61.980 72.222 21.08 1.37 40.90 6.53
291 292 2.203308 TCCTCCTACGGCTAGCGG 60.203 66.667 19.74 19.74 0.00 5.52
292 293 2.553727 GGTCCTCCTACGGCTAGCG 61.554 68.421 9.00 6.83 0.00 4.26
293 294 1.152715 AGGTCCTCCTACGGCTAGC 60.153 63.158 6.04 6.04 43.12 3.42
294 295 1.457009 GCAGGTCCTCCTACGGCTAG 61.457 65.000 0.00 0.00 43.07 3.42
295 296 1.455217 GCAGGTCCTCCTACGGCTA 60.455 63.158 0.00 0.00 43.07 3.93
296 297 2.760385 GCAGGTCCTCCTACGGCT 60.760 66.667 0.00 0.00 43.07 5.52
297 298 3.075005 TGCAGGTCCTCCTACGGC 61.075 66.667 0.00 0.00 43.07 5.68
298 299 1.258445 AACTGCAGGTCCTCCTACGG 61.258 60.000 19.93 0.00 43.07 4.02
299 300 0.608640 AAACTGCAGGTCCTCCTACG 59.391 55.000 19.93 0.00 43.07 3.51
300 301 1.903183 AGAAACTGCAGGTCCTCCTAC 59.097 52.381 19.93 0.00 43.07 3.18
301 302 2.180276 GAGAAACTGCAGGTCCTCCTA 58.820 52.381 19.93 0.00 43.07 2.94
302 303 0.980423 GAGAAACTGCAGGTCCTCCT 59.020 55.000 19.93 7.14 46.37 3.69
303 304 0.980423 AGAGAAACTGCAGGTCCTCC 59.020 55.000 15.23 0.00 0.00 4.30
304 305 3.093057 TCTAGAGAAACTGCAGGTCCTC 58.907 50.000 10.52 10.52 0.00 3.71
305 306 3.176924 TCTAGAGAAACTGCAGGTCCT 57.823 47.619 19.93 3.56 0.00 3.85
306 307 3.855858 CTTCTAGAGAAACTGCAGGTCC 58.144 50.000 19.93 0.00 33.07 4.46
307 308 3.258228 GCTTCTAGAGAAACTGCAGGTC 58.742 50.000 19.93 14.77 33.07 3.85
308 309 2.027653 GGCTTCTAGAGAAACTGCAGGT 60.028 50.000 19.93 9.19 33.07 4.00
309 310 2.626840 GGCTTCTAGAGAAACTGCAGG 58.373 52.381 19.93 0.00 33.07 4.85
310 311 2.094494 TCGGCTTCTAGAGAAACTGCAG 60.094 50.000 13.48 13.48 33.07 4.41
311 312 1.893137 TCGGCTTCTAGAGAAACTGCA 59.107 47.619 0.00 0.00 33.07 4.41
312 313 2.094442 AGTCGGCTTCTAGAGAAACTGC 60.094 50.000 0.00 0.00 33.07 4.40
313 314 3.191581 TGAGTCGGCTTCTAGAGAAACTG 59.808 47.826 0.00 0.00 33.07 3.16
314 315 3.422796 TGAGTCGGCTTCTAGAGAAACT 58.577 45.455 0.00 0.00 33.07 2.66
315 316 3.851976 TGAGTCGGCTTCTAGAGAAAC 57.148 47.619 0.00 0.00 33.07 2.78
316 317 4.523173 TCTTTGAGTCGGCTTCTAGAGAAA 59.477 41.667 0.00 0.00 33.07 2.52
317 318 4.079970 TCTTTGAGTCGGCTTCTAGAGAA 58.920 43.478 0.00 0.00 0.00 2.87
318 319 3.687125 TCTTTGAGTCGGCTTCTAGAGA 58.313 45.455 0.00 0.00 0.00 3.10
319 320 4.442375 TTCTTTGAGTCGGCTTCTAGAG 57.558 45.455 0.00 0.00 0.00 2.43
320 321 4.523173 TCTTTCTTTGAGTCGGCTTCTAGA 59.477 41.667 0.00 0.00 0.00 2.43
321 322 4.810790 TCTTTCTTTGAGTCGGCTTCTAG 58.189 43.478 0.00 0.00 0.00 2.43
322 323 4.866508 TCTTTCTTTGAGTCGGCTTCTA 57.133 40.909 0.00 0.00 0.00 2.10
323 324 3.753294 TCTTTCTTTGAGTCGGCTTCT 57.247 42.857 0.00 0.00 0.00 2.85
324 325 4.813296 TTTCTTTCTTTGAGTCGGCTTC 57.187 40.909 0.00 0.00 0.00 3.86
325 326 4.640647 ACTTTTCTTTCTTTGAGTCGGCTT 59.359 37.500 0.00 0.00 0.00 4.35
326 327 4.200092 ACTTTTCTTTCTTTGAGTCGGCT 58.800 39.130 0.00 0.00 0.00 5.52
327 328 4.553756 ACTTTTCTTTCTTTGAGTCGGC 57.446 40.909 0.00 0.00 0.00 5.54
328 329 5.677178 CGAAACTTTTCTTTCTTTGAGTCGG 59.323 40.000 0.47 0.00 35.07 4.79
329 330 5.169738 GCGAAACTTTTCTTTCTTTGAGTCG 59.830 40.000 0.47 0.00 35.07 4.18
330 331 6.258899 AGCGAAACTTTTCTTTCTTTGAGTC 58.741 36.000 0.47 0.00 35.07 3.36
331 332 6.196079 AGCGAAACTTTTCTTTCTTTGAGT 57.804 33.333 0.47 0.00 35.07 3.41
332 333 7.410485 ACTAGCGAAACTTTTCTTTCTTTGAG 58.590 34.615 0.47 0.00 35.07 3.02
333 334 7.316544 ACTAGCGAAACTTTTCTTTCTTTGA 57.683 32.000 0.47 0.00 35.07 2.69
334 335 8.120465 TGTACTAGCGAAACTTTTCTTTCTTTG 58.880 33.333 0.00 0.00 35.07 2.77
335 336 8.205131 TGTACTAGCGAAACTTTTCTTTCTTT 57.795 30.769 0.00 0.00 35.07 2.52
336 337 7.781548 TGTACTAGCGAAACTTTTCTTTCTT 57.218 32.000 0.00 0.00 35.07 2.52
359 360 0.178767 TGCAGGGTGCTAGTGCTATG 59.821 55.000 0.00 0.00 45.31 2.23
360 361 0.179000 GTGCAGGGTGCTAGTGCTAT 59.821 55.000 0.00 0.00 45.31 2.97
361 362 1.596934 GTGCAGGGTGCTAGTGCTA 59.403 57.895 0.00 0.00 45.31 3.49
362 363 2.348998 GTGCAGGGTGCTAGTGCT 59.651 61.111 0.00 0.00 45.31 4.40
363 364 2.747855 GGTGCAGGGTGCTAGTGC 60.748 66.667 0.00 0.00 45.31 4.40
571 580 1.605710 GACCATGGATTCAGCCATTCG 59.394 52.381 21.47 0.00 46.29 3.34
572 581 2.658285 TGACCATGGATTCAGCCATTC 58.342 47.619 21.47 1.28 46.29 2.67
573 582 2.832643 TGACCATGGATTCAGCCATT 57.167 45.000 21.47 0.00 46.29 3.16
579 2385 0.810648 GCGCTTTGACCATGGATTCA 59.189 50.000 21.47 10.18 0.00 2.57
663 2470 1.822371 GGTTGAGAGAGACTGGGAGAC 59.178 57.143 0.00 0.00 0.00 3.36
898 2724 0.102481 GCTTGATCTCGCCGAGGTTA 59.898 55.000 15.08 0.00 0.00 2.85
1038 2901 2.567615 GCTGGAGGAGAGGAGTTTACAA 59.432 50.000 0.00 0.00 0.00 2.41
1056 2919 5.431420 AACTACGTAGATCTGATCTGCTG 57.569 43.478 28.74 21.61 40.51 4.41
1072 2935 6.030797 CGTAAGAACTAAGAACACGAACTACG 59.969 42.308 0.00 0.00 44.91 3.51
1073 2936 6.183359 GCGTAAGAACTAAGAACACGAACTAC 60.183 42.308 0.00 0.00 43.02 2.73
1075 2938 4.678742 GCGTAAGAACTAAGAACACGAACT 59.321 41.667 0.00 0.00 43.02 3.01
1078 2941 4.224433 CAGCGTAAGAACTAAGAACACGA 58.776 43.478 0.00 0.00 43.02 4.35
1079 2942 3.979495 ACAGCGTAAGAACTAAGAACACG 59.021 43.478 0.00 0.00 43.02 4.49
1080 2943 5.902051 AACAGCGTAAGAACTAAGAACAC 57.098 39.130 0.00 0.00 43.02 3.32
1081 2944 6.278363 AGAAACAGCGTAAGAACTAAGAACA 58.722 36.000 0.00 0.00 43.02 3.18
1082 2945 6.766452 AGAAACAGCGTAAGAACTAAGAAC 57.234 37.500 0.00 0.00 43.02 3.01
1083 2946 6.292703 GCAAGAAACAGCGTAAGAACTAAGAA 60.293 38.462 0.00 0.00 43.02 2.52
1084 2947 5.176958 GCAAGAAACAGCGTAAGAACTAAGA 59.823 40.000 0.00 0.00 43.02 2.10
1085 2948 5.177696 AGCAAGAAACAGCGTAAGAACTAAG 59.822 40.000 0.00 0.00 43.02 2.18
1086 2949 5.054477 AGCAAGAAACAGCGTAAGAACTAA 58.946 37.500 0.00 0.00 43.02 2.24
1087 2950 4.628074 AGCAAGAAACAGCGTAAGAACTA 58.372 39.130 0.00 0.00 43.02 2.24
1088 2951 3.467803 AGCAAGAAACAGCGTAAGAACT 58.532 40.909 0.00 0.00 43.02 3.01
1415 3319 8.258708 ACAGTGATCTTACATTACTAGTTTCCC 58.741 37.037 0.00 0.00 0.00 3.97
1432 3336 5.489792 TTGCTTAGGAAAGACAGTGATCT 57.510 39.130 0.00 0.00 34.37 2.75
1433 3337 6.560253 TTTTGCTTAGGAAAGACAGTGATC 57.440 37.500 0.00 0.00 34.37 2.92
1434 3338 6.959639 TTTTTGCTTAGGAAAGACAGTGAT 57.040 33.333 0.00 0.00 34.37 3.06
1489 3393 7.691791 GCACTATATTTTGGAATGGAGGGAGTA 60.692 40.741 0.00 0.00 0.00 2.59
1490 3394 6.605119 CACTATATTTTGGAATGGAGGGAGT 58.395 40.000 0.00 0.00 0.00 3.85
1491 3395 5.474876 GCACTATATTTTGGAATGGAGGGAG 59.525 44.000 0.00 0.00 0.00 4.30
1492 3396 5.385198 GCACTATATTTTGGAATGGAGGGA 58.615 41.667 0.00 0.00 0.00 4.20
1493 3397 4.216257 CGCACTATATTTTGGAATGGAGGG 59.784 45.833 0.00 0.00 0.00 4.30
1494 3398 4.320494 GCGCACTATATTTTGGAATGGAGG 60.320 45.833 0.30 0.00 0.00 4.30
1495 3399 4.320494 GGCGCACTATATTTTGGAATGGAG 60.320 45.833 10.83 0.00 0.00 3.86
1496 3400 3.568007 GGCGCACTATATTTTGGAATGGA 59.432 43.478 10.83 0.00 0.00 3.41
1497 3401 3.305335 GGGCGCACTATATTTTGGAATGG 60.305 47.826 10.83 0.00 0.00 3.16
1498 3402 3.609175 CGGGCGCACTATATTTTGGAATG 60.609 47.826 8.62 0.00 0.00 2.67
1499 3403 2.552315 CGGGCGCACTATATTTTGGAAT 59.448 45.455 8.62 0.00 0.00 3.01
1500 3404 1.944024 CGGGCGCACTATATTTTGGAA 59.056 47.619 8.62 0.00 0.00 3.53
1501 3405 1.588674 CGGGCGCACTATATTTTGGA 58.411 50.000 8.62 0.00 0.00 3.53
1502 3406 0.040425 GCGGGCGCACTATATTTTGG 60.040 55.000 8.62 0.00 41.49 3.28
1503 3407 0.384230 CGCGGGCGCACTATATTTTG 60.384 55.000 8.62 0.00 42.06 2.44
1504 3408 1.938861 CGCGGGCGCACTATATTTT 59.061 52.632 8.62 0.00 42.06 1.82
1505 3409 3.637714 CGCGGGCGCACTATATTT 58.362 55.556 8.62 0.00 42.06 1.40
1519 3423 4.771356 TCGACCTCGGAAAGCGCG 62.771 66.667 0.00 0.00 40.29 6.86
1520 3424 2.431942 TTCGACCTCGGAAAGCGC 60.432 61.111 0.00 0.00 40.29 5.92
1521 3425 0.666577 AAGTTCGACCTCGGAAAGCG 60.667 55.000 0.00 0.00 40.29 4.68
1522 3426 1.194772 CAAAGTTCGACCTCGGAAAGC 59.805 52.381 0.00 0.00 40.29 3.51
1523 3427 2.475487 GTCAAAGTTCGACCTCGGAAAG 59.525 50.000 0.00 0.00 40.29 2.62
1524 3428 2.476821 GTCAAAGTTCGACCTCGGAAA 58.523 47.619 0.00 0.00 40.29 3.13
1525 3429 2.144482 GTCAAAGTTCGACCTCGGAA 57.856 50.000 0.00 0.00 40.29 4.30
1526 3430 3.879912 GTCAAAGTTCGACCTCGGA 57.120 52.632 0.00 0.00 40.29 4.55
1532 3436 8.011106 TCGTTAAATTTATGGTCAAAGTTCGAC 58.989 33.333 0.00 0.00 29.44 4.20
1533 3437 8.085720 TCGTTAAATTTATGGTCAAAGTTCGA 57.914 30.769 0.00 0.00 29.44 3.71
1534 3438 8.624028 GTTCGTTAAATTTATGGTCAAAGTTCG 58.376 33.333 0.00 0.00 29.44 3.95
1535 3439 8.624028 CGTTCGTTAAATTTATGGTCAAAGTTC 58.376 33.333 0.00 0.00 29.44 3.01
1536 3440 8.344098 TCGTTCGTTAAATTTATGGTCAAAGTT 58.656 29.630 0.00 0.00 31.36 2.66
1537 3441 7.863666 TCGTTCGTTAAATTTATGGTCAAAGT 58.136 30.769 0.00 0.00 0.00 2.66
1538 3442 8.225107 TCTCGTTCGTTAAATTTATGGTCAAAG 58.775 33.333 0.00 0.00 0.00 2.77
1539 3443 8.011106 GTCTCGTTCGTTAAATTTATGGTCAAA 58.989 33.333 0.00 0.00 0.00 2.69
1540 3444 7.360269 GGTCTCGTTCGTTAAATTTATGGTCAA 60.360 37.037 0.00 0.00 0.00 3.18
1541 3445 6.091169 GGTCTCGTTCGTTAAATTTATGGTCA 59.909 38.462 0.00 0.00 0.00 4.02
1542 3446 6.472680 GGTCTCGTTCGTTAAATTTATGGTC 58.527 40.000 0.00 0.00 0.00 4.02
1543 3447 5.062558 CGGTCTCGTTCGTTAAATTTATGGT 59.937 40.000 0.00 0.00 0.00 3.55
1544 3448 5.289193 TCGGTCTCGTTCGTTAAATTTATGG 59.711 40.000 0.00 0.00 37.69 2.74
1545 3449 6.034256 AGTCGGTCTCGTTCGTTAAATTTATG 59.966 38.462 0.00 0.00 37.69 1.90
1546 3450 6.034256 CAGTCGGTCTCGTTCGTTAAATTTAT 59.966 38.462 0.00 0.00 37.69 1.40
1547 3451 5.343058 CAGTCGGTCTCGTTCGTTAAATTTA 59.657 40.000 0.00 0.00 37.69 1.40
1548 3452 4.149396 CAGTCGGTCTCGTTCGTTAAATTT 59.851 41.667 0.00 0.00 37.69 1.82
1549 3453 3.671928 CAGTCGGTCTCGTTCGTTAAATT 59.328 43.478 0.00 0.00 37.69 1.82
1550 3454 3.240069 CAGTCGGTCTCGTTCGTTAAAT 58.760 45.455 0.00 0.00 37.69 1.40
1551 3455 2.653890 CAGTCGGTCTCGTTCGTTAAA 58.346 47.619 0.00 0.00 37.69 1.52
1552 3456 1.664016 GCAGTCGGTCTCGTTCGTTAA 60.664 52.381 0.00 0.00 37.69 2.01
1553 3457 0.110056 GCAGTCGGTCTCGTTCGTTA 60.110 55.000 0.00 0.00 37.69 3.18
1554 3458 1.371389 GCAGTCGGTCTCGTTCGTT 60.371 57.895 0.00 0.00 37.69 3.85
1555 3459 2.254651 GCAGTCGGTCTCGTTCGT 59.745 61.111 0.00 0.00 37.69 3.85
1556 3460 2.870161 CGCAGTCGGTCTCGTTCG 60.870 66.667 0.00 0.00 37.69 3.95
1566 3470 2.319096 TTTTTACCCGCCGCAGTCG 61.319 57.895 0.00 0.00 0.00 4.18
1567 3471 3.658048 TTTTTACCCGCCGCAGTC 58.342 55.556 0.00 0.00 0.00 3.51
1613 3517 9.722056 GAGCAAAAATTATATCAGTGAATTCGT 57.278 29.630 0.00 0.00 0.00 3.85
1614 3518 9.173939 GGAGCAAAAATTATATCAGTGAATTCG 57.826 33.333 0.00 0.00 0.00 3.34
1615 3519 9.468532 GGGAGCAAAAATTATATCAGTGAATTC 57.531 33.333 0.00 0.00 0.00 2.17
1616 3520 8.137437 CGGGAGCAAAAATTATATCAGTGAATT 58.863 33.333 0.00 0.00 0.00 2.17
1617 3521 7.651808 CGGGAGCAAAAATTATATCAGTGAAT 58.348 34.615 0.00 0.00 0.00 2.57
1618 3522 7.026631 CGGGAGCAAAAATTATATCAGTGAA 57.973 36.000 0.00 0.00 0.00 3.18
1619 3523 6.618287 CGGGAGCAAAAATTATATCAGTGA 57.382 37.500 0.00 0.00 0.00 3.41
1644 3548 5.712217 TTTAACTATCAAGACCGATTGCG 57.288 39.130 0.00 0.00 37.24 4.85
1648 3552 9.847224 ACCATAAATTTAACTATCAAGACCGAT 57.153 29.630 1.21 0.00 0.00 4.18
1649 3553 9.321562 GACCATAAATTTAACTATCAAGACCGA 57.678 33.333 1.21 0.00 0.00 4.69
1650 3554 9.104965 TGACCATAAATTTAACTATCAAGACCG 57.895 33.333 1.21 0.00 0.00 4.79
1660 3564 8.088365 GCTTCAACCTTGACCATAAATTTAACT 58.912 33.333 1.21 0.00 36.83 2.24
1661 3565 7.061789 CGCTTCAACCTTGACCATAAATTTAAC 59.938 37.037 1.21 0.00 36.83 2.01
1662 3566 7.087639 CGCTTCAACCTTGACCATAAATTTAA 58.912 34.615 1.21 0.00 36.83 1.52
1663 3567 6.616947 CGCTTCAACCTTGACCATAAATTTA 58.383 36.000 0.00 0.00 36.83 1.40
1664 3568 5.469479 CGCTTCAACCTTGACCATAAATTT 58.531 37.500 0.00 0.00 36.83 1.82
1665 3569 4.618227 GCGCTTCAACCTTGACCATAAATT 60.618 41.667 0.00 0.00 36.83 1.82
1666 3570 3.119495 GCGCTTCAACCTTGACCATAAAT 60.119 43.478 0.00 0.00 36.83 1.40
1667 3571 2.227865 GCGCTTCAACCTTGACCATAAA 59.772 45.455 0.00 0.00 36.83 1.40
1668 3572 1.810151 GCGCTTCAACCTTGACCATAA 59.190 47.619 0.00 0.00 36.83 1.90
1669 3573 1.448985 GCGCTTCAACCTTGACCATA 58.551 50.000 0.00 0.00 36.83 2.74
1670 3574 1.577328 CGCGCTTCAACCTTGACCAT 61.577 55.000 5.56 0.00 36.83 3.55
1671 3575 2.250939 CGCGCTTCAACCTTGACCA 61.251 57.895 5.56 0.00 36.83 4.02
1672 3576 2.556287 CGCGCTTCAACCTTGACC 59.444 61.111 5.56 0.00 36.83 4.02
1673 3577 1.503818 TTCCGCGCTTCAACCTTGAC 61.504 55.000 5.56 0.00 36.83 3.18
1674 3578 0.816018 TTTCCGCGCTTCAACCTTGA 60.816 50.000 5.56 0.00 34.92 3.02
1675 3579 0.240945 ATTTCCGCGCTTCAACCTTG 59.759 50.000 5.56 0.00 0.00 3.61
1676 3580 1.737793 CTATTTCCGCGCTTCAACCTT 59.262 47.619 5.56 0.00 0.00 3.50
1677 3581 1.066430 TCTATTTCCGCGCTTCAACCT 60.066 47.619 5.56 0.00 0.00 3.50
1678 3582 1.327764 CTCTATTTCCGCGCTTCAACC 59.672 52.381 5.56 0.00 0.00 3.77
1679 3583 1.327764 CCTCTATTTCCGCGCTTCAAC 59.672 52.381 5.56 0.00 0.00 3.18
1680 3584 1.206132 TCCTCTATTTCCGCGCTTCAA 59.794 47.619 5.56 0.00 0.00 2.69
1681 3585 0.821517 TCCTCTATTTCCGCGCTTCA 59.178 50.000 5.56 0.00 0.00 3.02
1682 3586 1.861575 CTTCCTCTATTTCCGCGCTTC 59.138 52.381 5.56 0.00 0.00 3.86
1683 3587 1.941325 CTTCCTCTATTTCCGCGCTT 58.059 50.000 5.56 0.00 0.00 4.68
1684 3588 0.530870 GCTTCCTCTATTTCCGCGCT 60.531 55.000 5.56 0.00 0.00 5.92
1685 3589 0.810031 TGCTTCCTCTATTTCCGCGC 60.810 55.000 0.00 0.00 0.00 6.86
1686 3590 0.931005 GTGCTTCCTCTATTTCCGCG 59.069 55.000 0.00 0.00 0.00 6.46
1687 3591 2.317530 AGTGCTTCCTCTATTTCCGC 57.682 50.000 0.00 0.00 0.00 5.54
1688 3592 4.386867 TGTAGTGCTTCCTCTATTTCCG 57.613 45.455 0.00 0.00 0.00 4.30
1689 3593 8.150945 TCATAATGTAGTGCTTCCTCTATTTCC 58.849 37.037 0.00 0.00 0.00 3.13
1690 3594 9.547753 TTCATAATGTAGTGCTTCCTCTATTTC 57.452 33.333 0.00 0.00 0.00 2.17
1691 3595 9.905713 TTTCATAATGTAGTGCTTCCTCTATTT 57.094 29.630 0.00 0.00 0.00 1.40
1692 3596 9.331282 GTTTCATAATGTAGTGCTTCCTCTATT 57.669 33.333 0.00 0.00 0.00 1.73
1693 3597 7.653713 CGTTTCATAATGTAGTGCTTCCTCTAT 59.346 37.037 0.00 0.00 0.00 1.98
1694 3598 6.978659 CGTTTCATAATGTAGTGCTTCCTCTA 59.021 38.462 0.00 0.00 0.00 2.43
1695 3599 5.812642 CGTTTCATAATGTAGTGCTTCCTCT 59.187 40.000 0.00 0.00 0.00 3.69
1696 3600 5.006746 CCGTTTCATAATGTAGTGCTTCCTC 59.993 44.000 0.00 0.00 0.00 3.71
1697 3601 4.876107 CCGTTTCATAATGTAGTGCTTCCT 59.124 41.667 0.00 0.00 0.00 3.36
1698 3602 4.873827 TCCGTTTCATAATGTAGTGCTTCC 59.126 41.667 0.00 0.00 0.00 3.46
1699 3603 5.006746 CCTCCGTTTCATAATGTAGTGCTTC 59.993 44.000 0.00 0.00 0.00 3.86
1700 3604 4.876107 CCTCCGTTTCATAATGTAGTGCTT 59.124 41.667 0.00 0.00 0.00 3.91
1701 3605 4.442706 CCTCCGTTTCATAATGTAGTGCT 58.557 43.478 0.00 0.00 0.00 4.40
1702 3606 3.560068 CCCTCCGTTTCATAATGTAGTGC 59.440 47.826 0.00 0.00 0.00 4.40
1703 3607 5.018539 TCCCTCCGTTTCATAATGTAGTG 57.981 43.478 0.00 0.00 0.00 2.74
1704 3608 4.715297 ACTCCCTCCGTTTCATAATGTAGT 59.285 41.667 0.00 0.00 0.00 2.73
1705 3609 5.277857 ACTCCCTCCGTTTCATAATGTAG 57.722 43.478 0.00 0.00 0.00 2.74
1706 3610 6.989155 ATACTCCCTCCGTTTCATAATGTA 57.011 37.500 0.00 0.00 0.00 2.29
1707 3611 5.888982 ATACTCCCTCCGTTTCATAATGT 57.111 39.130 0.00 0.00 0.00 2.71
1708 3612 8.848474 ATTAATACTCCCTCCGTTTCATAATG 57.152 34.615 0.00 0.00 0.00 1.90
1709 3613 9.862149 AAATTAATACTCCCTCCGTTTCATAAT 57.138 29.630 0.00 0.00 0.00 1.28
1711 3615 9.768662 GTAAATTAATACTCCCTCCGTTTCATA 57.231 33.333 0.00 0.00 0.00 2.15
1712 3616 7.718314 GGTAAATTAATACTCCCTCCGTTTCAT 59.282 37.037 0.00 0.00 0.00 2.57
1713 3617 7.049754 GGTAAATTAATACTCCCTCCGTTTCA 58.950 38.462 0.00 0.00 0.00 2.69
1714 3618 7.278135 AGGTAAATTAATACTCCCTCCGTTTC 58.722 38.462 0.00 0.00 0.00 2.78
1715 3619 7.204243 AGGTAAATTAATACTCCCTCCGTTT 57.796 36.000 0.00 0.00 0.00 3.60
1716 3620 6.819947 AGGTAAATTAATACTCCCTCCGTT 57.180 37.500 0.00 0.00 0.00 4.44
1717 3621 6.819947 AAGGTAAATTAATACTCCCTCCGT 57.180 37.500 0.00 0.00 0.00 4.69
1718 3622 9.617523 TTAAAAGGTAAATTAATACTCCCTCCG 57.382 33.333 0.00 0.00 0.00 4.63
1788 3693 9.988350 GGTACGATTATGAAATAGGCAATATTG 57.012 33.333 11.27 11.27 34.21 1.90
1790 3695 9.162764 GTGGTACGATTATGAAATAGGCAATAT 57.837 33.333 0.00 0.00 0.00 1.28
1832 3741 3.118408 TCTTTGATCCAAGGGACATACGG 60.118 47.826 6.70 0.00 32.98 4.02
1961 3872 1.704628 TCCATCTTTGCCTTCCACTCA 59.295 47.619 0.00 0.00 0.00 3.41
2048 3959 3.499737 CTCCCGAATGCCGTGTGC 61.500 66.667 0.00 0.00 41.77 4.57
2245 4163 4.782019 ATTTCACAAACATACATGGCGT 57.218 36.364 0.00 0.00 0.00 5.68
2710 4639 1.095600 CCGACCTCGAGATCTGAACA 58.904 55.000 15.71 0.00 43.02 3.18
3014 4943 1.709147 GGGTCGCACTGTGATCATGC 61.709 60.000 12.86 9.32 35.96 4.06
3016 4945 0.324614 TTGGGTCGCACTGTGATCAT 59.675 50.000 12.86 0.00 0.00 2.45
3059 4988 4.158579 CACAACACTACATCTCTAGGCTCA 59.841 45.833 0.00 0.00 0.00 4.26
3203 5148 9.974980 TTTGACCACAATTTATAAGAAAGGAAC 57.025 29.630 0.00 0.00 35.85 3.62
3206 5151 9.626045 GACTTTGACCACAATTTATAAGAAAGG 57.374 33.333 0.00 0.00 35.85 3.11
3358 5304 7.797819 AGAAATAAACACGAGCTTAACTTCTG 58.202 34.615 0.00 0.00 0.00 3.02
3415 5523 4.898320 TCATAAGTGCAGTGAGTCAATGT 58.102 39.130 20.69 4.71 31.72 2.71
3429 5537 5.500234 TCCTTGGGAGTTCAATCATAAGTG 58.500 41.667 0.00 0.00 0.00 3.16
3567 5676 3.446442 AATGATGGAGGGGATACATGC 57.554 47.619 0.00 0.00 30.07 4.06
3629 5738 6.685527 TTGTCTTTTGTACAAGTGTATGCA 57.314 33.333 8.56 0.00 33.13 3.96
3704 5835 9.440784 GTTATTTGTTCTACGACATTGTCAAAA 57.559 29.630 16.61 5.78 32.09 2.44
3705 5836 8.832521 AGTTATTTGTTCTACGACATTGTCAAA 58.167 29.630 16.61 8.45 32.09 2.69
3706 5837 8.373048 AGTTATTTGTTCTACGACATTGTCAA 57.627 30.769 16.61 3.47 32.09 3.18
3707 5838 7.956420 AGTTATTTGTTCTACGACATTGTCA 57.044 32.000 16.61 0.00 32.09 3.58
3708 5839 9.136952 AGTAGTTATTTGTTCTACGACATTGTC 57.863 33.333 6.73 6.73 38.99 3.18
3709 5840 9.136952 GAGTAGTTATTTGTTCTACGACATTGT 57.863 33.333 0.00 0.00 38.99 2.71
3710 5841 9.135843 TGAGTAGTTATTTGTTCTACGACATTG 57.864 33.333 0.00 0.00 38.99 2.82
3711 5842 9.701098 TTGAGTAGTTATTTGTTCTACGACATT 57.299 29.630 0.00 0.00 38.99 2.71
3712 5843 9.701098 TTTGAGTAGTTATTTGTTCTACGACAT 57.299 29.630 0.00 0.00 38.99 3.06
3713 5844 8.971321 GTTTGAGTAGTTATTTGTTCTACGACA 58.029 33.333 0.00 0.00 38.99 4.35
3714 5845 8.971321 TGTTTGAGTAGTTATTTGTTCTACGAC 58.029 33.333 0.00 0.00 38.99 4.34
3715 5846 9.701098 ATGTTTGAGTAGTTATTTGTTCTACGA 57.299 29.630 0.00 0.00 38.99 3.43
3865 5996 1.288633 TCAGCACCATCATCCCCATTT 59.711 47.619 0.00 0.00 0.00 2.32
3903 6034 3.726517 CCTGCGGTGCCGAAACAG 61.727 66.667 15.45 11.58 42.83 3.16
3918 6049 1.705745 GAAACACCTCTCCTTTCCCCT 59.294 52.381 0.00 0.00 0.00 4.79
3959 6090 0.038159 CTCTCGTTCTCCACCACCAC 60.038 60.000 0.00 0.00 0.00 4.16
3985 6116 4.385643 CCCAAAAGATAGCTCCAATCTCCA 60.386 45.833 0.00 0.00 32.48 3.86
4012 6143 7.933577 TGTCATATTTCACCATCCAGAATAGTC 59.066 37.037 0.00 0.00 0.00 2.59
4019 6150 5.824097 TGATGTGTCATATTTCACCATCCAG 59.176 40.000 0.00 0.00 34.14 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.