Multiple sequence alignment - TraesCS2D01G156900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G156900 chr2D 100.000 2632 0 0 962 3593 100191638 100189007 0.000000e+00 4861.0
1 TraesCS2D01G156900 chr2D 96.326 1606 56 1 962 2567 100311333 100312935 0.000000e+00 2636.0
2 TraesCS2D01G156900 chr2D 100.000 718 0 0 1 718 100192599 100191882 0.000000e+00 1327.0
3 TraesCS2D01G156900 chr2D 81.987 755 94 21 2459 3199 100312905 100313631 1.430000e-168 603.0
4 TraesCS2D01G156900 chr2B 97.445 2348 57 1 962 3306 151909087 151906740 0.000000e+00 4000.0
5 TraesCS2D01G156900 chr2B 95.758 1603 65 1 962 2564 152157044 152158643 0.000000e+00 2580.0
6 TraesCS2D01G156900 chr2B 82.654 761 93 21 2459 3208 152158616 152159348 3.910000e-179 638.0
7 TraesCS2D01G156900 chr2B 90.369 488 16 11 250 718 151910009 151909534 2.370000e-171 612.0
8 TraesCS2D01G156900 chr2B 81.356 177 25 6 26 198 705884690 705884518 1.740000e-28 137.0
9 TraesCS2D01G156900 chr2B 98.485 66 1 0 3528 3593 151906742 151906677 2.270000e-22 117.0
10 TraesCS2D01G156900 chr2A 95.945 1603 62 1 962 2564 99794023 99792424 0.000000e+00 2597.0
11 TraesCS2D01G156900 chr2A 95.525 1609 66 2 962 2567 100114164 100115769 0.000000e+00 2567.0
12 TraesCS2D01G156900 chr2A 95.958 1138 37 4 2459 3593 99792451 99791320 0.000000e+00 1838.0
13 TraesCS2D01G156900 chr2A 97.633 169 4 0 550 718 99794337 99794169 1.260000e-74 291.0
14 TraesCS2D01G156900 chr7B 87.500 352 34 7 1778 2127 28627321 28627664 7.230000e-107 398.0
15 TraesCS2D01G156900 chr1B 85.268 224 26 5 2536 2754 641536035 641535814 1.300000e-54 224.0
16 TraesCS2D01G156900 chr7A 90.000 140 13 1 1767 1906 83722611 83722749 2.850000e-41 180.0
17 TraesCS2D01G156900 chr7A 84.091 132 15 2 2116 2241 83725124 83725255 4.870000e-24 122.0
18 TraesCS2D01G156900 chr7A 91.071 56 4 1 2223 2278 680597711 680597765 1.380000e-09 75.0
19 TraesCS2D01G156900 chr6D 82.979 188 22 5 20 198 363056388 363056202 1.030000e-35 161.0
20 TraesCS2D01G156900 chr6D 78.109 201 33 6 16 208 47947089 47947286 2.270000e-22 117.0
21 TraesCS2D01G156900 chr6D 85.882 85 10 2 115 197 63125144 63125060 4.940000e-14 89.8
22 TraesCS2D01G156900 chr6D 78.169 142 24 4 67 201 455630647 455630788 2.300000e-12 84.2
23 TraesCS2D01G156900 chr4D 79.670 182 27 7 26 197 380463977 380464158 4.870000e-24 122.0
24 TraesCS2D01G156900 chr5D 79.885 174 28 5 26 193 276547644 276547816 1.750000e-23 121.0
25 TraesCS2D01G156900 chr5D 78.090 178 27 6 20 195 459218761 459218928 6.350000e-18 102.0
26 TraesCS2D01G156900 chr6A 79.121 182 27 8 26 198 20248118 20248297 8.150000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G156900 chr2D 100189007 100192599 3592 True 3094.000000 4861 100.0000 1 3593 2 chr2D.!!$R1 3592
1 TraesCS2D01G156900 chr2D 100311333 100313631 2298 False 1619.500000 2636 89.1565 962 3199 2 chr2D.!!$F1 2237
2 TraesCS2D01G156900 chr2B 152157044 152159348 2304 False 1609.000000 2580 89.2060 962 3208 2 chr2B.!!$F1 2246
3 TraesCS2D01G156900 chr2B 151906677 151910009 3332 True 1576.333333 4000 95.4330 250 3593 3 chr2B.!!$R2 3343
4 TraesCS2D01G156900 chr2A 100114164 100115769 1605 False 2567.000000 2567 95.5250 962 2567 1 chr2A.!!$F1 1605
5 TraesCS2D01G156900 chr2A 99791320 99794337 3017 True 1575.333333 2597 96.5120 550 3593 3 chr2A.!!$R1 3043

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
198 199 0.252696 ATGTGCCCTAGACAGACCCA 60.253 55.0 0.0 0.0 0.00 4.51 F
199 200 0.472925 TGTGCCCTAGACAGACCCAA 60.473 55.0 0.0 0.0 0.00 4.12 F
227 228 0.539051 GTGGCAGCACTCTGTCCTAT 59.461 55.0 0.0 0.0 44.11 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1830 2059 4.079787 AGCAACCCAGGAATCATAAGCTTA 60.080 41.667 8.99 8.99 0.00 3.09 R
2288 2520 2.297701 TCTTCTTTGCAGGTGTGGAAC 58.702 47.619 0.00 0.00 33.05 3.62 R
2631 3019 1.352352 AGCTCCCACATAACTGCAACT 59.648 47.619 0.00 0.00 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.753107 AGCATTATTGTAACTTTAACGGCT 57.247 33.333 0.00 0.00 0.00 5.52
26 27 7.153217 AGCATTATTGTAACTTTAACGGCTT 57.847 32.000 0.00 0.00 0.00 4.35
27 28 7.599171 AGCATTATTGTAACTTTAACGGCTTT 58.401 30.769 0.00 0.00 0.00 3.51
28 29 7.540745 AGCATTATTGTAACTTTAACGGCTTTG 59.459 33.333 0.00 0.00 0.00 2.77
29 30 7.662761 CATTATTGTAACTTTAACGGCTTTGC 58.337 34.615 0.00 0.00 0.00 3.68
30 31 4.904253 TTGTAACTTTAACGGCTTTGCT 57.096 36.364 0.00 0.00 0.00 3.91
31 32 6.563222 ATTGTAACTTTAACGGCTTTGCTA 57.437 33.333 0.00 0.00 0.00 3.49
32 33 6.374565 TTGTAACTTTAACGGCTTTGCTAA 57.625 33.333 0.00 0.00 0.00 3.09
33 34 6.374565 TGTAACTTTAACGGCTTTGCTAAA 57.625 33.333 0.00 0.00 0.00 1.85
34 35 6.432107 TGTAACTTTAACGGCTTTGCTAAAG 58.568 36.000 4.78 4.78 41.46 1.85
71 72 8.691797 TGCCCTAAGTATTTCACATTTAAATCC 58.308 33.333 0.00 0.00 0.00 3.01
72 73 8.914011 GCCCTAAGTATTTCACATTTAAATCCT 58.086 33.333 0.00 0.00 0.00 3.24
100 101 9.104965 TGTCATTAATTTTATTCGGAGATTCGT 57.895 29.630 0.00 0.00 35.04 3.85
101 102 9.370126 GTCATTAATTTTATTCGGAGATTCGTG 57.630 33.333 0.00 0.00 35.04 4.35
102 103 8.067784 TCATTAATTTTATTCGGAGATTCGTGC 58.932 33.333 0.00 0.00 35.04 5.34
103 104 5.811399 AATTTTATTCGGAGATTCGTGCA 57.189 34.783 0.00 0.00 35.04 4.57
104 105 6.377327 AATTTTATTCGGAGATTCGTGCAT 57.623 33.333 0.00 0.00 35.04 3.96
105 106 4.794248 TTTATTCGGAGATTCGTGCATG 57.206 40.909 0.00 0.00 35.04 4.06
106 107 2.315925 ATTCGGAGATTCGTGCATGT 57.684 45.000 5.68 0.00 35.04 3.21
107 108 2.951457 TTCGGAGATTCGTGCATGTA 57.049 45.000 5.68 0.00 35.04 2.29
108 109 3.452755 TTCGGAGATTCGTGCATGTAT 57.547 42.857 5.68 1.05 35.04 2.29
109 110 3.452755 TCGGAGATTCGTGCATGTATT 57.547 42.857 5.68 0.00 0.00 1.89
110 111 3.792401 TCGGAGATTCGTGCATGTATTT 58.208 40.909 5.68 0.00 0.00 1.40
111 112 4.188462 TCGGAGATTCGTGCATGTATTTT 58.812 39.130 5.68 0.00 0.00 1.82
112 113 4.634004 TCGGAGATTCGTGCATGTATTTTT 59.366 37.500 5.68 0.00 0.00 1.94
113 114 4.963953 CGGAGATTCGTGCATGTATTTTTC 59.036 41.667 5.68 2.21 0.00 2.29
114 115 5.273944 GGAGATTCGTGCATGTATTTTTCC 58.726 41.667 5.68 7.23 0.00 3.13
115 116 5.248870 AGATTCGTGCATGTATTTTTCCC 57.751 39.130 5.68 0.00 0.00 3.97
116 117 4.949856 AGATTCGTGCATGTATTTTTCCCT 59.050 37.500 5.68 0.00 0.00 4.20
117 118 5.418840 AGATTCGTGCATGTATTTTTCCCTT 59.581 36.000 5.68 0.00 0.00 3.95
118 119 5.461032 TTCGTGCATGTATTTTTCCCTTT 57.539 34.783 5.68 0.00 0.00 3.11
119 120 5.461032 TCGTGCATGTATTTTTCCCTTTT 57.539 34.783 5.68 0.00 0.00 2.27
120 121 5.465935 TCGTGCATGTATTTTTCCCTTTTC 58.534 37.500 5.68 0.00 0.00 2.29
121 122 4.625311 CGTGCATGTATTTTTCCCTTTTCC 59.375 41.667 0.00 0.00 0.00 3.13
122 123 5.566627 CGTGCATGTATTTTTCCCTTTTCCT 60.567 40.000 0.00 0.00 0.00 3.36
123 124 6.230472 GTGCATGTATTTTTCCCTTTTCCTT 58.770 36.000 0.00 0.00 0.00 3.36
124 125 6.710295 GTGCATGTATTTTTCCCTTTTCCTTT 59.290 34.615 0.00 0.00 0.00 3.11
125 126 7.228507 GTGCATGTATTTTTCCCTTTTCCTTTT 59.771 33.333 0.00 0.00 0.00 2.27
126 127 7.777440 TGCATGTATTTTTCCCTTTTCCTTTTT 59.223 29.630 0.00 0.00 0.00 1.94
155 156 9.681692 TTCATATTTGATCGAGCCATTTAAATG 57.318 29.630 19.40 19.40 36.17 2.32
156 157 8.849168 TCATATTTGATCGAGCCATTTAAATGT 58.151 29.630 23.24 8.92 34.60 2.71
157 158 8.908678 CATATTTGATCGAGCCATTTAAATGTG 58.091 33.333 23.24 16.47 34.60 3.21
158 159 4.291540 TGATCGAGCCATTTAAATGTGC 57.708 40.909 23.24 23.27 34.60 4.57
159 160 3.693578 TGATCGAGCCATTTAAATGTGCA 59.306 39.130 28.16 16.79 36.03 4.57
160 161 4.157472 TGATCGAGCCATTTAAATGTGCAA 59.843 37.500 28.16 19.26 36.03 4.08
161 162 4.717233 TCGAGCCATTTAAATGTGCAAT 57.283 36.364 28.16 17.11 36.03 3.56
162 163 5.826601 TCGAGCCATTTAAATGTGCAATA 57.173 34.783 28.16 17.17 36.03 1.90
163 164 6.201226 TCGAGCCATTTAAATGTGCAATAA 57.799 33.333 28.16 16.04 36.03 1.40
164 165 6.033341 TCGAGCCATTTAAATGTGCAATAAC 58.967 36.000 28.16 18.09 36.03 1.89
165 166 6.035843 CGAGCCATTTAAATGTGCAATAACT 58.964 36.000 28.16 15.67 36.03 2.24
166 167 7.066404 TCGAGCCATTTAAATGTGCAATAACTA 59.934 33.333 28.16 13.37 36.03 2.24
167 168 7.376866 CGAGCCATTTAAATGTGCAATAACTAG 59.623 37.037 28.16 13.03 36.03 2.57
168 169 7.491682 AGCCATTTAAATGTGCAATAACTAGG 58.508 34.615 28.16 13.11 36.03 3.02
169 170 6.701400 GCCATTTAAATGTGCAATAACTAGGG 59.299 38.462 24.67 10.31 34.69 3.53
170 171 6.701400 CCATTTAAATGTGCAATAACTAGGGC 59.299 38.462 23.24 0.00 34.60 5.19
171 172 6.842437 TTTAAATGTGCAATAACTAGGGCA 57.158 33.333 0.00 0.00 0.00 5.36
179 180 5.750524 TGCAATAACTAGGGCACATTTAGA 58.249 37.500 0.00 0.00 0.00 2.10
180 181 6.364701 TGCAATAACTAGGGCACATTTAGAT 58.635 36.000 0.00 0.00 0.00 1.98
181 182 6.262944 TGCAATAACTAGGGCACATTTAGATG 59.737 38.462 0.00 0.00 39.25 2.90
193 194 5.028549 ACATTTAGATGTGCCCTAGACAG 57.971 43.478 0.00 0.00 44.64 3.51
194 195 4.716784 ACATTTAGATGTGCCCTAGACAGA 59.283 41.667 0.00 0.00 44.64 3.41
195 196 4.737855 TTTAGATGTGCCCTAGACAGAC 57.262 45.455 0.00 0.00 0.00 3.51
196 197 1.490574 AGATGTGCCCTAGACAGACC 58.509 55.000 0.00 0.00 0.00 3.85
197 198 0.466124 GATGTGCCCTAGACAGACCC 59.534 60.000 0.00 0.00 0.00 4.46
198 199 0.252696 ATGTGCCCTAGACAGACCCA 60.253 55.000 0.00 0.00 0.00 4.51
199 200 0.472925 TGTGCCCTAGACAGACCCAA 60.473 55.000 0.00 0.00 0.00 4.12
200 201 0.690762 GTGCCCTAGACAGACCCAAA 59.309 55.000 0.00 0.00 0.00 3.28
201 202 0.690762 TGCCCTAGACAGACCCAAAC 59.309 55.000 0.00 0.00 0.00 2.93
202 203 0.984995 GCCCTAGACAGACCCAAACT 59.015 55.000 0.00 0.00 0.00 2.66
203 204 2.185387 GCCCTAGACAGACCCAAACTA 58.815 52.381 0.00 0.00 0.00 2.24
204 205 2.570302 GCCCTAGACAGACCCAAACTAA 59.430 50.000 0.00 0.00 0.00 2.24
205 206 3.008704 GCCCTAGACAGACCCAAACTAAA 59.991 47.826 0.00 0.00 0.00 1.85
206 207 4.506095 GCCCTAGACAGACCCAAACTAAAA 60.506 45.833 0.00 0.00 0.00 1.52
207 208 5.806734 GCCCTAGACAGACCCAAACTAAAAT 60.807 44.000 0.00 0.00 0.00 1.82
208 209 5.648092 CCCTAGACAGACCCAAACTAAAATG 59.352 44.000 0.00 0.00 0.00 2.32
209 210 6.238648 CCTAGACAGACCCAAACTAAAATGT 58.761 40.000 0.00 0.00 0.00 2.71
210 211 6.149474 CCTAGACAGACCCAAACTAAAATGTG 59.851 42.308 0.00 0.00 0.00 3.21
211 212 4.827284 AGACAGACCCAAACTAAAATGTGG 59.173 41.667 0.00 0.00 0.00 4.17
212 213 3.320826 ACAGACCCAAACTAAAATGTGGC 59.679 43.478 0.00 0.00 0.00 5.01
213 214 3.320541 CAGACCCAAACTAAAATGTGGCA 59.679 43.478 0.00 0.00 0.00 4.92
214 215 3.573967 AGACCCAAACTAAAATGTGGCAG 59.426 43.478 0.00 0.00 0.00 4.85
215 216 2.037121 ACCCAAACTAAAATGTGGCAGC 59.963 45.455 0.00 0.00 0.00 5.25
216 217 2.036992 CCCAAACTAAAATGTGGCAGCA 59.963 45.455 0.00 0.00 0.00 4.41
217 218 3.059166 CCAAACTAAAATGTGGCAGCAC 58.941 45.455 0.00 0.00 0.00 4.40
218 219 3.243839 CCAAACTAAAATGTGGCAGCACT 60.244 43.478 0.00 0.00 0.00 4.40
219 220 3.923017 AACTAAAATGTGGCAGCACTC 57.077 42.857 0.00 0.00 0.00 3.51
220 221 3.146104 ACTAAAATGTGGCAGCACTCT 57.854 42.857 0.00 0.00 0.00 3.24
221 222 2.816087 ACTAAAATGTGGCAGCACTCTG 59.184 45.455 0.00 0.00 43.16 3.35
222 223 1.696063 AAAATGTGGCAGCACTCTGT 58.304 45.000 0.00 0.00 42.29 3.41
223 224 1.242076 AAATGTGGCAGCACTCTGTC 58.758 50.000 0.00 0.00 44.94 3.51
224 225 0.607489 AATGTGGCAGCACTCTGTCC 60.607 55.000 0.00 0.00 44.11 4.02
225 226 1.486997 ATGTGGCAGCACTCTGTCCT 61.487 55.000 0.00 0.00 44.11 3.85
226 227 0.831711 TGTGGCAGCACTCTGTCCTA 60.832 55.000 0.00 0.00 44.11 2.94
227 228 0.539051 GTGGCAGCACTCTGTCCTAT 59.461 55.000 0.00 0.00 44.11 2.57
228 229 1.757118 GTGGCAGCACTCTGTCCTATA 59.243 52.381 0.00 0.00 44.11 1.31
229 230 2.366916 GTGGCAGCACTCTGTCCTATAT 59.633 50.000 0.00 0.00 44.11 0.86
230 231 2.366590 TGGCAGCACTCTGTCCTATATG 59.633 50.000 0.00 0.00 44.11 1.78
231 232 2.366916 GGCAGCACTCTGTCCTATATGT 59.633 50.000 0.00 0.00 42.29 2.29
232 233 3.181461 GGCAGCACTCTGTCCTATATGTT 60.181 47.826 0.00 0.00 42.29 2.71
233 234 4.446371 GCAGCACTCTGTCCTATATGTTT 58.554 43.478 0.00 0.00 42.29 2.83
234 235 4.509600 GCAGCACTCTGTCCTATATGTTTC 59.490 45.833 0.00 0.00 42.29 2.78
235 236 5.683509 GCAGCACTCTGTCCTATATGTTTCT 60.684 44.000 0.00 0.00 42.29 2.52
236 237 5.982516 CAGCACTCTGTCCTATATGTTTCTC 59.017 44.000 0.00 0.00 35.61 2.87
237 238 5.658634 AGCACTCTGTCCTATATGTTTCTCA 59.341 40.000 0.00 0.00 0.00 3.27
238 239 5.751028 GCACTCTGTCCTATATGTTTCTCAC 59.249 44.000 0.00 0.00 0.00 3.51
239 240 6.406400 GCACTCTGTCCTATATGTTTCTCACT 60.406 42.308 0.00 0.00 0.00 3.41
240 241 6.977502 CACTCTGTCCTATATGTTTCTCACTG 59.022 42.308 0.00 0.00 0.00 3.66
241 242 6.665680 ACTCTGTCCTATATGTTTCTCACTGT 59.334 38.462 0.00 0.00 0.00 3.55
242 243 7.179338 ACTCTGTCCTATATGTTTCTCACTGTT 59.821 37.037 0.00 0.00 0.00 3.16
243 244 7.907389 TCTGTCCTATATGTTTCTCACTGTTT 58.093 34.615 0.00 0.00 0.00 2.83
244 245 8.035394 TCTGTCCTATATGTTTCTCACTGTTTC 58.965 37.037 0.00 0.00 0.00 2.78
245 246 7.103641 TGTCCTATATGTTTCTCACTGTTTCC 58.896 38.462 0.00 0.00 0.00 3.13
246 247 7.103641 GTCCTATATGTTTCTCACTGTTTCCA 58.896 38.462 0.00 0.00 0.00 3.53
247 248 7.770897 GTCCTATATGTTTCTCACTGTTTCCAT 59.229 37.037 0.00 0.00 0.00 3.41
248 249 7.987458 TCCTATATGTTTCTCACTGTTTCCATC 59.013 37.037 0.00 0.00 0.00 3.51
274 275 8.568794 CATAGTAGTTTGAAGACCGATCATCTA 58.431 37.037 0.00 0.00 0.00 1.98
371 372 6.271488 TCCATGCTTTTCTTAATTGAGTGG 57.729 37.500 0.00 0.00 0.00 4.00
372 373 6.009589 TCCATGCTTTTCTTAATTGAGTGGA 58.990 36.000 0.00 0.00 0.00 4.02
373 374 6.664816 TCCATGCTTTTCTTAATTGAGTGGAT 59.335 34.615 0.00 0.00 0.00 3.41
374 375 7.178983 TCCATGCTTTTCTTAATTGAGTGGATT 59.821 33.333 0.00 0.00 0.00 3.01
375 376 7.490402 CCATGCTTTTCTTAATTGAGTGGATTC 59.510 37.037 0.00 0.00 0.00 2.52
376 377 6.924111 TGCTTTTCTTAATTGAGTGGATTCC 58.076 36.000 0.00 0.00 0.00 3.01
377 378 6.721208 TGCTTTTCTTAATTGAGTGGATTCCT 59.279 34.615 3.95 0.00 0.00 3.36
378 379 7.233348 TGCTTTTCTTAATTGAGTGGATTCCTT 59.767 33.333 3.95 0.00 0.00 3.36
434 435 9.649167 ATTCCATGCTTCTATTTTTCTTTTGAG 57.351 29.630 0.00 0.00 0.00 3.02
1083 1312 0.955428 ACTACGACCGCCTCAACGTA 60.955 55.000 0.00 0.00 39.59 3.57
1188 1417 1.079127 CCTCGACAAGCCGTCCAAT 60.079 57.895 0.00 0.00 42.07 3.16
1194 1423 1.299648 CAAGCCGTCCAATCCCTCA 59.700 57.895 0.00 0.00 0.00 3.86
1431 1660 2.362760 TCCCTTACCGGCGCTGTA 60.363 61.111 16.49 10.74 0.00 2.74
1830 2059 3.784511 AATGCTATCTGCTATGGTGCT 57.215 42.857 0.00 0.00 43.37 4.40
2288 2520 5.070180 AGACTGATGAGGATGATGTAACTGG 59.930 44.000 0.00 0.00 0.00 4.00
2631 3019 9.632807 GTTTACATTGGCTTGTCATGTTATTTA 57.367 29.630 0.00 0.00 0.00 1.40
2770 3158 7.506114 ACCGAAATGCTATGGTAATTAGAGAA 58.494 34.615 0.00 0.00 31.60 2.87
2772 3160 8.283291 CCGAAATGCTATGGTAATTAGAGAAAC 58.717 37.037 0.00 0.00 0.00 2.78
2850 3240 6.395426 TGCAGTGAATTTTGTTCTCATCTT 57.605 33.333 0.00 0.00 0.00 2.40
3093 3489 6.908870 AAATTTGCCAGTTTCACTTCTTTC 57.091 33.333 0.00 0.00 0.00 2.62
3167 3564 6.828273 TGAATTTCCTGAGTAACATATGTGGG 59.172 38.462 9.63 5.66 0.00 4.61
3175 3572 4.199310 AGTAACATATGTGGGATGTGCAC 58.801 43.478 10.75 10.75 37.59 4.57
3251 3648 3.455152 GGAACCCCTTGCAACCAC 58.545 61.111 0.00 0.00 0.00 4.16
3303 3700 2.119801 AGGTTGCTGCCATTCTACTG 57.880 50.000 0.00 0.00 0.00 2.74
3304 3701 1.630369 AGGTTGCTGCCATTCTACTGA 59.370 47.619 0.00 0.00 0.00 3.41
3305 3702 2.040278 AGGTTGCTGCCATTCTACTGAA 59.960 45.455 0.00 0.00 36.54 3.02
3306 3703 2.819608 GGTTGCTGCCATTCTACTGAAA 59.180 45.455 0.00 0.00 35.63 2.69
3307 3704 3.445096 GGTTGCTGCCATTCTACTGAAAT 59.555 43.478 0.00 0.00 35.63 2.17
3308 3705 4.418392 GTTGCTGCCATTCTACTGAAATG 58.582 43.478 0.00 0.00 35.63 2.32
3309 3706 2.424601 TGCTGCCATTCTACTGAAATGC 59.575 45.455 0.00 0.00 35.63 3.56
3310 3707 2.540361 GCTGCCATTCTACTGAAATGCG 60.540 50.000 0.00 0.00 36.31 4.73
3311 3708 2.938451 CTGCCATTCTACTGAAATGCGA 59.062 45.455 0.00 0.00 36.31 5.10
3312 3709 3.544684 TGCCATTCTACTGAAATGCGAT 58.455 40.909 0.00 0.00 36.31 4.58
3313 3710 3.313249 TGCCATTCTACTGAAATGCGATG 59.687 43.478 0.00 0.00 36.31 3.84
3314 3711 3.304257 GCCATTCTACTGAAATGCGATGG 60.304 47.826 0.00 0.00 35.63 3.51
3315 3712 3.879295 CCATTCTACTGAAATGCGATGGT 59.121 43.478 0.00 0.00 35.63 3.55
3316 3713 4.336433 CCATTCTACTGAAATGCGATGGTT 59.664 41.667 0.00 0.00 35.63 3.67
3317 3714 5.504665 CCATTCTACTGAAATGCGATGGTTC 60.505 44.000 0.00 0.00 35.63 3.62
3318 3715 4.471904 TCTACTGAAATGCGATGGTTCT 57.528 40.909 0.00 0.00 0.00 3.01
3319 3716 4.832248 TCTACTGAAATGCGATGGTTCTT 58.168 39.130 0.00 0.00 0.00 2.52
3320 3717 5.972935 TCTACTGAAATGCGATGGTTCTTA 58.027 37.500 0.00 0.00 0.00 2.10
3321 3718 6.042777 TCTACTGAAATGCGATGGTTCTTAG 58.957 40.000 0.00 0.00 0.00 2.18
3322 3719 4.832248 ACTGAAATGCGATGGTTCTTAGA 58.168 39.130 0.00 0.00 0.00 2.10
3323 3720 5.245531 ACTGAAATGCGATGGTTCTTAGAA 58.754 37.500 0.00 0.00 0.00 2.10
3324 3721 5.705441 ACTGAAATGCGATGGTTCTTAGAAA 59.295 36.000 0.00 0.00 0.00 2.52
3325 3722 6.375455 ACTGAAATGCGATGGTTCTTAGAAAT 59.625 34.615 0.00 0.00 0.00 2.17
3326 3723 7.094205 ACTGAAATGCGATGGTTCTTAGAAATT 60.094 33.333 0.00 0.00 0.00 1.82
3327 3724 7.601856 TGAAATGCGATGGTTCTTAGAAATTT 58.398 30.769 0.00 0.00 0.00 1.82
3328 3725 7.754924 TGAAATGCGATGGTTCTTAGAAATTTC 59.245 33.333 10.33 10.33 33.19 2.17
3329 3726 5.560966 TGCGATGGTTCTTAGAAATTTCC 57.439 39.130 14.61 0.00 0.00 3.13
3330 3727 5.007034 TGCGATGGTTCTTAGAAATTTCCA 58.993 37.500 14.61 4.84 0.00 3.53
3331 3728 5.475220 TGCGATGGTTCTTAGAAATTTCCAA 59.525 36.000 14.61 6.72 0.00 3.53
3332 3729 6.152661 TGCGATGGTTCTTAGAAATTTCCAAT 59.847 34.615 14.61 0.00 0.00 3.16
3333 3730 6.693113 GCGATGGTTCTTAGAAATTTCCAATC 59.307 38.462 14.61 5.99 0.00 2.67
3334 3731 7.628366 GCGATGGTTCTTAGAAATTTCCAATCA 60.628 37.037 14.61 9.30 0.00 2.57
3335 3732 8.243426 CGATGGTTCTTAGAAATTTCCAATCAA 58.757 33.333 14.61 1.41 0.00 2.57
3336 3733 9.927668 GATGGTTCTTAGAAATTTCCAATCAAA 57.072 29.630 14.61 0.74 0.00 2.69
3356 3753 6.815089 TCAAATTTTGATAACAAGGCTGTGT 58.185 32.000 7.74 0.00 37.32 3.72
3357 3754 7.946207 TCAAATTTTGATAACAAGGCTGTGTA 58.054 30.769 7.74 0.00 37.32 2.90
3358 3755 8.584157 TCAAATTTTGATAACAAGGCTGTGTAT 58.416 29.630 7.74 0.00 37.32 2.29
3359 3756 8.649841 CAAATTTTGATAACAAGGCTGTGTATG 58.350 33.333 2.88 0.00 37.32 2.39
3360 3757 6.892658 TTTTGATAACAAGGCTGTGTATGT 57.107 33.333 0.00 0.00 37.32 2.29
3361 3758 6.892658 TTTGATAACAAGGCTGTGTATGTT 57.107 33.333 6.73 6.73 39.23 2.71
3362 3759 7.987750 TTTGATAACAAGGCTGTGTATGTTA 57.012 32.000 10.25 10.25 41.09 2.41
3363 3760 8.574251 TTTGATAACAAGGCTGTGTATGTTAT 57.426 30.769 17.18 17.18 46.25 1.89
3366 3763 7.792374 ATAACAAGGCTGTGTATGTTATCAG 57.208 36.000 13.25 0.00 42.34 2.90
3367 3764 5.165961 ACAAGGCTGTGTATGTTATCAGT 57.834 39.130 0.00 0.00 33.30 3.41
3368 3765 6.294361 ACAAGGCTGTGTATGTTATCAGTA 57.706 37.500 0.00 0.00 33.30 2.74
3369 3766 6.707290 ACAAGGCTGTGTATGTTATCAGTAA 58.293 36.000 0.00 0.00 33.30 2.24
3370 3767 7.165485 ACAAGGCTGTGTATGTTATCAGTAAA 58.835 34.615 0.00 0.00 33.30 2.01
3371 3768 7.829211 ACAAGGCTGTGTATGTTATCAGTAAAT 59.171 33.333 0.00 0.00 33.30 1.40
3372 3769 7.792374 AGGCTGTGTATGTTATCAGTAAATG 57.208 36.000 0.00 0.00 0.00 2.32
3373 3770 7.338710 AGGCTGTGTATGTTATCAGTAAATGT 58.661 34.615 0.00 0.00 0.00 2.71
3374 3771 8.482943 AGGCTGTGTATGTTATCAGTAAATGTA 58.517 33.333 0.00 0.00 0.00 2.29
3375 3772 8.765219 GGCTGTGTATGTTATCAGTAAATGTAG 58.235 37.037 0.00 0.00 0.00 2.74
3376 3773 9.314321 GCTGTGTATGTTATCAGTAAATGTAGT 57.686 33.333 0.00 0.00 0.00 2.73
3378 3775 9.594478 TGTGTATGTTATCAGTAAATGTAGTGG 57.406 33.333 0.00 0.00 32.31 4.00
3379 3776 9.811995 GTGTATGTTATCAGTAAATGTAGTGGA 57.188 33.333 0.00 0.00 32.31 4.02
3402 3799 1.931635 TTTGCCCCCATTAGTTGTCC 58.068 50.000 0.00 0.00 0.00 4.02
3403 3800 0.780637 TTGCCCCCATTAGTTGTCCA 59.219 50.000 0.00 0.00 0.00 4.02
3404 3801 0.039035 TGCCCCCATTAGTTGTCCAC 59.961 55.000 0.00 0.00 0.00 4.02
3405 3802 0.331616 GCCCCCATTAGTTGTCCACT 59.668 55.000 0.00 0.00 39.87 4.00
3406 3803 1.682087 GCCCCCATTAGTTGTCCACTC 60.682 57.143 0.00 0.00 36.88 3.51
3407 3804 1.916181 CCCCCATTAGTTGTCCACTCT 59.084 52.381 0.00 0.00 36.88 3.24
3408 3805 2.092914 CCCCCATTAGTTGTCCACTCTC 60.093 54.545 0.00 0.00 36.88 3.20
3409 3806 2.840651 CCCCATTAGTTGTCCACTCTCT 59.159 50.000 0.00 0.00 36.88 3.10
3410 3807 3.118592 CCCCATTAGTTGTCCACTCTCTC 60.119 52.174 0.00 0.00 36.88 3.20
3411 3808 3.118592 CCCATTAGTTGTCCACTCTCTCC 60.119 52.174 0.00 0.00 36.88 3.71
3412 3809 3.515502 CCATTAGTTGTCCACTCTCTCCA 59.484 47.826 0.00 0.00 36.88 3.86
3413 3810 4.382470 CCATTAGTTGTCCACTCTCTCCAG 60.382 50.000 0.00 0.00 36.88 3.86
3414 3811 2.390225 AGTTGTCCACTCTCTCCAGT 57.610 50.000 0.00 0.00 0.00 4.00
3415 3812 2.243810 AGTTGTCCACTCTCTCCAGTC 58.756 52.381 0.00 0.00 0.00 3.51
3416 3813 1.273886 GTTGTCCACTCTCTCCAGTCC 59.726 57.143 0.00 0.00 0.00 3.85
3417 3814 0.482887 TGTCCACTCTCTCCAGTCCA 59.517 55.000 0.00 0.00 0.00 4.02
3418 3815 0.892063 GTCCACTCTCTCCAGTCCAC 59.108 60.000 0.00 0.00 0.00 4.02
3419 3816 0.780637 TCCACTCTCTCCAGTCCACT 59.219 55.000 0.00 0.00 0.00 4.00
3420 3817 0.894141 CCACTCTCTCCAGTCCACTG 59.106 60.000 0.00 0.00 43.40 3.66
3421 3818 1.626686 CACTCTCTCCAGTCCACTGT 58.373 55.000 5.99 0.00 42.27 3.55
3422 3819 2.555448 CCACTCTCTCCAGTCCACTGTA 60.555 54.545 5.99 0.00 42.27 2.74
3423 3820 2.490115 CACTCTCTCCAGTCCACTGTAC 59.510 54.545 5.99 0.00 42.27 2.90
3424 3821 2.377193 ACTCTCTCCAGTCCACTGTACT 59.623 50.000 5.99 0.00 42.27 2.73
3425 3822 2.752354 CTCTCTCCAGTCCACTGTACTG 59.248 54.545 5.99 4.14 42.27 2.74
3426 3823 2.375509 TCTCTCCAGTCCACTGTACTGA 59.624 50.000 11.36 0.00 45.89 3.41
3427 3824 3.157881 CTCTCCAGTCCACTGTACTGAA 58.842 50.000 11.36 0.00 45.89 3.02
3428 3825 3.157881 TCTCCAGTCCACTGTACTGAAG 58.842 50.000 11.36 2.00 45.89 3.02
3429 3826 1.618837 TCCAGTCCACTGTACTGAAGC 59.381 52.381 11.36 0.00 45.89 3.86
3430 3827 1.620819 CCAGTCCACTGTACTGAAGCT 59.379 52.381 11.36 0.00 45.89 3.74
3431 3828 2.037772 CCAGTCCACTGTACTGAAGCTT 59.962 50.000 11.36 0.00 45.89 3.74
3432 3829 3.321497 CAGTCCACTGTACTGAAGCTTC 58.679 50.000 19.89 19.89 45.89 3.86
3433 3830 3.006323 CAGTCCACTGTACTGAAGCTTCT 59.994 47.826 26.09 10.55 45.89 2.85
3434 3831 3.006323 AGTCCACTGTACTGAAGCTTCTG 59.994 47.826 26.40 26.40 0.00 3.02
3435 3832 2.300152 TCCACTGTACTGAAGCTTCTGG 59.700 50.000 29.77 23.93 0.00 3.86
3436 3833 2.072298 CACTGTACTGAAGCTTCTGGC 58.928 52.381 29.77 23.00 42.19 4.85
3446 3843 2.576298 GCTTCTGGCTTGCCAATCT 58.424 52.632 15.63 0.00 38.06 2.40
3447 3844 0.893447 GCTTCTGGCTTGCCAATCTT 59.107 50.000 15.63 0.00 38.06 2.40
3448 3845 1.135170 GCTTCTGGCTTGCCAATCTTC 60.135 52.381 15.63 1.06 38.06 2.87
3449 3846 2.165167 CTTCTGGCTTGCCAATCTTCA 58.835 47.619 15.63 0.00 0.00 3.02
3450 3847 2.291209 TCTGGCTTGCCAATCTTCAA 57.709 45.000 15.63 0.00 0.00 2.69
3451 3848 1.888512 TCTGGCTTGCCAATCTTCAAC 59.111 47.619 15.63 0.00 0.00 3.18
3452 3849 0.968405 TGGCTTGCCAATCTTCAACC 59.032 50.000 12.40 0.00 0.00 3.77
3453 3850 1.260544 GGCTTGCCAATCTTCAACCT 58.739 50.000 6.79 0.00 0.00 3.50
3454 3851 1.067354 GGCTTGCCAATCTTCAACCTG 60.067 52.381 6.79 0.00 0.00 4.00
3455 3852 1.670967 GCTTGCCAATCTTCAACCTGC 60.671 52.381 0.00 0.00 0.00 4.85
3456 3853 1.891150 CTTGCCAATCTTCAACCTGCT 59.109 47.619 0.00 0.00 0.00 4.24
3457 3854 2.877097 TGCCAATCTTCAACCTGCTA 57.123 45.000 0.00 0.00 0.00 3.49
3458 3855 3.370840 TGCCAATCTTCAACCTGCTAT 57.629 42.857 0.00 0.00 0.00 2.97
3459 3856 3.700538 TGCCAATCTTCAACCTGCTATT 58.299 40.909 0.00 0.00 0.00 1.73
3460 3857 4.088634 TGCCAATCTTCAACCTGCTATTT 58.911 39.130 0.00 0.00 0.00 1.40
3461 3858 4.527816 TGCCAATCTTCAACCTGCTATTTT 59.472 37.500 0.00 0.00 0.00 1.82
3462 3859 4.866486 GCCAATCTTCAACCTGCTATTTTG 59.134 41.667 0.00 0.00 0.00 2.44
3463 3860 4.866486 CCAATCTTCAACCTGCTATTTTGC 59.134 41.667 0.00 0.00 0.00 3.68
3464 3861 5.337009 CCAATCTTCAACCTGCTATTTTGCT 60.337 40.000 0.00 0.00 0.00 3.91
3465 3862 4.771590 TCTTCAACCTGCTATTTTGCTG 57.228 40.909 0.00 0.00 0.00 4.41
3466 3863 4.397420 TCTTCAACCTGCTATTTTGCTGA 58.603 39.130 0.00 0.00 34.47 4.26
3467 3864 5.012239 TCTTCAACCTGCTATTTTGCTGAT 58.988 37.500 0.00 0.00 34.47 2.90
3468 3865 6.179756 TCTTCAACCTGCTATTTTGCTGATA 58.820 36.000 0.00 0.00 34.47 2.15
3469 3866 6.830324 TCTTCAACCTGCTATTTTGCTGATAT 59.170 34.615 0.00 0.00 34.47 1.63
3470 3867 7.340232 TCTTCAACCTGCTATTTTGCTGATATT 59.660 33.333 0.00 0.00 34.47 1.28
3471 3868 7.031226 TCAACCTGCTATTTTGCTGATATTC 57.969 36.000 0.00 0.00 34.47 1.75
3472 3869 6.830324 TCAACCTGCTATTTTGCTGATATTCT 59.170 34.615 0.00 0.00 34.47 2.40
3473 3870 7.340232 TCAACCTGCTATTTTGCTGATATTCTT 59.660 33.333 0.00 0.00 34.47 2.52
3474 3871 8.623903 CAACCTGCTATTTTGCTGATATTCTTA 58.376 33.333 0.00 0.00 34.47 2.10
3475 3872 8.752005 ACCTGCTATTTTGCTGATATTCTTAA 57.248 30.769 0.00 0.00 34.47 1.85
3476 3873 8.624776 ACCTGCTATTTTGCTGATATTCTTAAC 58.375 33.333 0.00 0.00 34.47 2.01
3477 3874 8.078596 CCTGCTATTTTGCTGATATTCTTAACC 58.921 37.037 0.00 0.00 34.47 2.85
3478 3875 8.752005 TGCTATTTTGCTGATATTCTTAACCT 57.248 30.769 0.00 0.00 0.00 3.50
3479 3876 8.623903 TGCTATTTTGCTGATATTCTTAACCTG 58.376 33.333 0.00 0.00 0.00 4.00
3480 3877 7.592903 GCTATTTTGCTGATATTCTTAACCTGC 59.407 37.037 0.00 0.00 0.00 4.85
3481 3878 6.832520 TTTTGCTGATATTCTTAACCTGCA 57.167 33.333 0.00 0.00 0.00 4.41
3482 3879 6.441093 TTTGCTGATATTCTTAACCTGCAG 57.559 37.500 6.78 6.78 34.23 4.41
3483 3880 5.102953 TGCTGATATTCTTAACCTGCAGT 57.897 39.130 13.81 0.00 0.00 4.40
3484 3881 6.233905 TGCTGATATTCTTAACCTGCAGTA 57.766 37.500 13.81 0.00 0.00 2.74
3485 3882 6.283694 TGCTGATATTCTTAACCTGCAGTAG 58.716 40.000 13.81 0.00 0.00 2.57
3486 3883 6.098266 TGCTGATATTCTTAACCTGCAGTAGA 59.902 38.462 13.81 6.95 0.00 2.59
3487 3884 6.986817 GCTGATATTCTTAACCTGCAGTAGAA 59.013 38.462 13.81 14.93 0.00 2.10
3488 3885 7.495934 GCTGATATTCTTAACCTGCAGTAGAAA 59.504 37.037 13.81 0.57 0.00 2.52
3489 3886 9.383519 CTGATATTCTTAACCTGCAGTAGAAAA 57.616 33.333 13.81 0.13 0.00 2.29
3490 3887 9.733556 TGATATTCTTAACCTGCAGTAGAAAAA 57.266 29.630 13.81 8.80 0.00 1.94
3513 3910 9.628500 AAAAATCCCTAGTCATAATACTTCCAC 57.372 33.333 0.00 0.00 0.00 4.02
3514 3911 6.936968 ATCCCTAGTCATAATACTTCCACC 57.063 41.667 0.00 0.00 0.00 4.61
3515 3912 5.784023 TCCCTAGTCATAATACTTCCACCA 58.216 41.667 0.00 0.00 0.00 4.17
3516 3913 5.601313 TCCCTAGTCATAATACTTCCACCAC 59.399 44.000 0.00 0.00 0.00 4.16
3517 3914 5.365605 CCCTAGTCATAATACTTCCACCACA 59.634 44.000 0.00 0.00 0.00 4.17
3518 3915 6.043243 CCCTAGTCATAATACTTCCACCACAT 59.957 42.308 0.00 0.00 0.00 3.21
3519 3916 7.420214 CCCTAGTCATAATACTTCCACCACATT 60.420 40.741 0.00 0.00 0.00 2.71
3520 3917 8.647796 CCTAGTCATAATACTTCCACCACATTA 58.352 37.037 0.00 0.00 0.00 1.90
3523 3920 9.342308 AGTCATAATACTTCCACCACATTAATG 57.658 33.333 14.01 14.01 0.00 1.90
3524 3921 9.120538 GTCATAATACTTCCACCACATTAATGT 57.879 33.333 15.47 15.47 42.84 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.916552 AGCCGTTAAAGTTACAATAATGCTAG 58.083 34.615 0.00 0.00 0.00 3.42
1 2 7.852971 AGCCGTTAAAGTTACAATAATGCTA 57.147 32.000 0.00 0.00 0.00 3.49
2 3 6.753107 AGCCGTTAAAGTTACAATAATGCT 57.247 33.333 0.00 0.00 0.00 3.79
3 4 7.662761 CAAAGCCGTTAAAGTTACAATAATGC 58.337 34.615 0.00 0.00 0.00 3.56
4 5 7.540745 AGCAAAGCCGTTAAAGTTACAATAATG 59.459 33.333 0.00 0.00 0.00 1.90
5 6 7.599171 AGCAAAGCCGTTAAAGTTACAATAAT 58.401 30.769 0.00 0.00 0.00 1.28
6 7 6.972722 AGCAAAGCCGTTAAAGTTACAATAA 58.027 32.000 0.00 0.00 0.00 1.40
7 8 6.563222 AGCAAAGCCGTTAAAGTTACAATA 57.437 33.333 0.00 0.00 0.00 1.90
8 9 5.447624 AGCAAAGCCGTTAAAGTTACAAT 57.552 34.783 0.00 0.00 0.00 2.71
9 10 4.904253 AGCAAAGCCGTTAAAGTTACAA 57.096 36.364 0.00 0.00 0.00 2.41
10 11 6.374565 TTTAGCAAAGCCGTTAAAGTTACA 57.625 33.333 0.00 0.00 0.00 2.41
11 12 6.906584 CTTTAGCAAAGCCGTTAAAGTTAC 57.093 37.500 6.59 0.00 35.88 2.50
45 46 8.691797 GGATTTAAATGTGAAATACTTAGGGCA 58.308 33.333 5.17 0.00 0.00 5.36
46 47 8.914011 AGGATTTAAATGTGAAATACTTAGGGC 58.086 33.333 5.17 0.00 34.39 5.19
74 75 9.104965 ACGAATCTCCGAATAAAATTAATGACA 57.895 29.630 0.00 0.00 0.00 3.58
75 76 9.370126 CACGAATCTCCGAATAAAATTAATGAC 57.630 33.333 0.00 0.00 0.00 3.06
76 77 8.067784 GCACGAATCTCCGAATAAAATTAATGA 58.932 33.333 0.00 0.00 0.00 2.57
77 78 7.855409 TGCACGAATCTCCGAATAAAATTAATG 59.145 33.333 0.00 0.00 0.00 1.90
78 79 7.925993 TGCACGAATCTCCGAATAAAATTAAT 58.074 30.769 0.00 0.00 0.00 1.40
79 80 7.310072 TGCACGAATCTCCGAATAAAATTAA 57.690 32.000 0.00 0.00 0.00 1.40
80 81 6.912203 TGCACGAATCTCCGAATAAAATTA 57.088 33.333 0.00 0.00 0.00 1.40
81 82 5.811399 TGCACGAATCTCCGAATAAAATT 57.189 34.783 0.00 0.00 0.00 1.82
82 83 5.296780 ACATGCACGAATCTCCGAATAAAAT 59.703 36.000 0.00 0.00 0.00 1.82
83 84 4.634004 ACATGCACGAATCTCCGAATAAAA 59.366 37.500 0.00 0.00 0.00 1.52
84 85 4.188462 ACATGCACGAATCTCCGAATAAA 58.812 39.130 0.00 0.00 0.00 1.40
85 86 3.792401 ACATGCACGAATCTCCGAATAA 58.208 40.909 0.00 0.00 0.00 1.40
86 87 3.452755 ACATGCACGAATCTCCGAATA 57.547 42.857 0.00 0.00 0.00 1.75
87 88 2.315925 ACATGCACGAATCTCCGAAT 57.684 45.000 0.00 0.00 0.00 3.34
88 89 2.951457 TACATGCACGAATCTCCGAA 57.049 45.000 0.00 0.00 0.00 4.30
89 90 3.452755 AATACATGCACGAATCTCCGA 57.547 42.857 0.00 0.00 0.00 4.55
90 91 4.536364 AAAATACATGCACGAATCTCCG 57.464 40.909 0.00 0.00 0.00 4.63
91 92 5.273944 GGAAAAATACATGCACGAATCTCC 58.726 41.667 0.00 0.00 0.00 3.71
92 93 5.066505 AGGGAAAAATACATGCACGAATCTC 59.933 40.000 0.00 0.00 0.00 2.75
93 94 4.949856 AGGGAAAAATACATGCACGAATCT 59.050 37.500 0.00 0.00 0.00 2.40
94 95 5.248870 AGGGAAAAATACATGCACGAATC 57.751 39.130 0.00 0.00 0.00 2.52
95 96 5.659440 AAGGGAAAAATACATGCACGAAT 57.341 34.783 0.00 0.00 0.00 3.34
96 97 5.461032 AAAGGGAAAAATACATGCACGAA 57.539 34.783 0.00 0.00 0.00 3.85
97 98 5.461032 AAAAGGGAAAAATACATGCACGA 57.539 34.783 0.00 0.00 0.00 4.35
98 99 4.625311 GGAAAAGGGAAAAATACATGCACG 59.375 41.667 0.00 0.00 0.00 5.34
99 100 5.793817 AGGAAAAGGGAAAAATACATGCAC 58.206 37.500 0.00 0.00 0.00 4.57
100 101 6.432403 AAGGAAAAGGGAAAAATACATGCA 57.568 33.333 0.00 0.00 0.00 3.96
101 102 7.744087 AAAAGGAAAAGGGAAAAATACATGC 57.256 32.000 0.00 0.00 0.00 4.06
129 130 9.681692 CATTTAAATGGCTCGATCAAATATGAA 57.318 29.630 18.72 0.00 34.41 2.57
130 131 8.849168 ACATTTAAATGGCTCGATCAAATATGA 58.151 29.630 27.43 0.00 40.70 2.15
131 132 8.908678 CACATTTAAATGGCTCGATCAAATATG 58.091 33.333 27.43 10.95 40.70 1.78
132 133 7.596248 GCACATTTAAATGGCTCGATCAAATAT 59.404 33.333 27.43 3.28 40.70 1.28
133 134 6.917477 GCACATTTAAATGGCTCGATCAAATA 59.083 34.615 27.43 0.00 40.70 1.40
134 135 5.750067 GCACATTTAAATGGCTCGATCAAAT 59.250 36.000 27.43 3.86 40.70 2.32
135 136 5.101628 GCACATTTAAATGGCTCGATCAAA 58.898 37.500 27.43 0.00 40.70 2.69
136 137 4.157472 TGCACATTTAAATGGCTCGATCAA 59.843 37.500 27.43 10.69 40.70 2.57
137 138 3.693578 TGCACATTTAAATGGCTCGATCA 59.306 39.130 27.43 13.32 40.70 2.92
138 139 4.291540 TGCACATTTAAATGGCTCGATC 57.708 40.909 27.43 11.41 40.70 3.69
139 140 4.717233 TTGCACATTTAAATGGCTCGAT 57.283 36.364 27.43 6.97 40.70 3.59
140 141 4.717233 ATTGCACATTTAAATGGCTCGA 57.283 36.364 27.43 16.94 40.70 4.04
141 142 6.035843 AGTTATTGCACATTTAAATGGCTCG 58.964 36.000 27.43 15.72 40.70 5.03
142 143 7.649306 CCTAGTTATTGCACATTTAAATGGCTC 59.351 37.037 27.43 17.32 40.70 4.70
143 144 7.417797 CCCTAGTTATTGCACATTTAAATGGCT 60.418 37.037 27.43 16.32 40.70 4.75
144 145 6.701400 CCCTAGTTATTGCACATTTAAATGGC 59.299 38.462 27.43 25.31 40.70 4.40
145 146 6.701400 GCCCTAGTTATTGCACATTTAAATGG 59.299 38.462 27.43 18.50 40.70 3.16
146 147 7.264221 TGCCCTAGTTATTGCACATTTAAATG 58.736 34.615 23.60 23.60 42.10 2.32
147 148 7.416964 TGCCCTAGTTATTGCACATTTAAAT 57.583 32.000 0.00 0.00 0.00 1.40
148 149 6.842437 TGCCCTAGTTATTGCACATTTAAA 57.158 33.333 0.00 0.00 0.00 1.52
156 157 5.750524 TCTAAATGTGCCCTAGTTATTGCA 58.249 37.500 0.00 0.00 0.00 4.08
157 158 6.263168 ACATCTAAATGTGCCCTAGTTATTGC 59.737 38.462 0.00 0.00 44.51 3.56
158 159 7.807977 ACATCTAAATGTGCCCTAGTTATTG 57.192 36.000 0.00 0.00 44.51 1.90
172 173 5.053145 GTCTGTCTAGGGCACATCTAAATG 58.947 45.833 0.00 0.00 38.93 2.32
173 174 4.101741 GGTCTGTCTAGGGCACATCTAAAT 59.898 45.833 0.00 0.00 0.00 1.40
174 175 3.451178 GGTCTGTCTAGGGCACATCTAAA 59.549 47.826 0.00 0.00 0.00 1.85
175 176 3.031736 GGTCTGTCTAGGGCACATCTAA 58.968 50.000 0.00 0.00 0.00 2.10
176 177 2.667470 GGTCTGTCTAGGGCACATCTA 58.333 52.381 0.00 0.00 0.00 1.98
177 178 1.490574 GGTCTGTCTAGGGCACATCT 58.509 55.000 0.00 0.00 0.00 2.90
178 179 0.466124 GGGTCTGTCTAGGGCACATC 59.534 60.000 0.00 0.00 0.00 3.06
179 180 0.252696 TGGGTCTGTCTAGGGCACAT 60.253 55.000 0.00 0.00 0.00 3.21
180 181 0.472925 TTGGGTCTGTCTAGGGCACA 60.473 55.000 0.00 0.00 0.00 4.57
181 182 0.690762 TTTGGGTCTGTCTAGGGCAC 59.309 55.000 0.00 0.00 0.00 5.01
182 183 0.690762 GTTTGGGTCTGTCTAGGGCA 59.309 55.000 0.00 0.00 0.00 5.36
183 184 0.984995 AGTTTGGGTCTGTCTAGGGC 59.015 55.000 0.00 0.00 0.00 5.19
184 185 4.903045 TTTAGTTTGGGTCTGTCTAGGG 57.097 45.455 0.00 0.00 0.00 3.53
185 186 6.149474 CACATTTTAGTTTGGGTCTGTCTAGG 59.851 42.308 0.00 0.00 0.00 3.02
186 187 6.149474 CCACATTTTAGTTTGGGTCTGTCTAG 59.851 42.308 0.00 0.00 0.00 2.43
187 188 6.001460 CCACATTTTAGTTTGGGTCTGTCTA 58.999 40.000 0.00 0.00 0.00 2.59
188 189 4.827284 CCACATTTTAGTTTGGGTCTGTCT 59.173 41.667 0.00 0.00 0.00 3.41
189 190 4.558697 GCCACATTTTAGTTTGGGTCTGTC 60.559 45.833 0.00 0.00 0.00 3.51
190 191 3.320826 GCCACATTTTAGTTTGGGTCTGT 59.679 43.478 0.00 0.00 0.00 3.41
191 192 3.320541 TGCCACATTTTAGTTTGGGTCTG 59.679 43.478 0.00 0.00 0.00 3.51
192 193 3.571590 TGCCACATTTTAGTTTGGGTCT 58.428 40.909 0.00 0.00 0.00 3.85
193 194 3.860754 GCTGCCACATTTTAGTTTGGGTC 60.861 47.826 0.00 0.00 0.00 4.46
194 195 2.037121 GCTGCCACATTTTAGTTTGGGT 59.963 45.455 0.00 0.00 0.00 4.51
195 196 2.036992 TGCTGCCACATTTTAGTTTGGG 59.963 45.455 0.00 0.00 0.00 4.12
196 197 3.059166 GTGCTGCCACATTTTAGTTTGG 58.941 45.455 0.00 0.00 41.67 3.28
197 198 3.981211 AGTGCTGCCACATTTTAGTTTG 58.019 40.909 0.00 0.00 44.53 2.93
198 199 3.891366 AGAGTGCTGCCACATTTTAGTTT 59.109 39.130 0.00 0.00 44.53 2.66
199 200 3.254166 CAGAGTGCTGCCACATTTTAGTT 59.746 43.478 0.00 0.00 44.53 2.24
200 201 2.816087 CAGAGTGCTGCCACATTTTAGT 59.184 45.455 0.00 0.00 44.53 2.24
201 202 2.816087 ACAGAGTGCTGCCACATTTTAG 59.184 45.455 0.00 0.00 46.26 1.85
202 203 2.813754 GACAGAGTGCTGCCACATTTTA 59.186 45.455 0.00 0.00 46.26 1.52
203 204 1.610522 GACAGAGTGCTGCCACATTTT 59.389 47.619 0.00 0.00 46.26 1.82
204 205 1.242076 GACAGAGTGCTGCCACATTT 58.758 50.000 0.00 0.00 46.26 2.32
205 206 0.607489 GGACAGAGTGCTGCCACATT 60.607 55.000 0.00 0.00 46.26 2.71
206 207 1.002868 GGACAGAGTGCTGCCACAT 60.003 57.895 0.00 0.00 46.26 3.21
207 208 0.831711 TAGGACAGAGTGCTGCCACA 60.832 55.000 1.22 0.00 46.26 4.17
208 209 0.539051 ATAGGACAGAGTGCTGCCAC 59.461 55.000 1.22 0.00 46.26 5.01
209 210 2.159179 TATAGGACAGAGTGCTGCCA 57.841 50.000 1.22 0.00 46.26 4.92
210 211 2.366916 ACATATAGGACAGAGTGCTGCC 59.633 50.000 1.22 0.00 46.26 4.85
211 212 3.742433 ACATATAGGACAGAGTGCTGC 57.258 47.619 1.22 0.00 46.26 5.25
213 214 5.658634 TGAGAAACATATAGGACAGAGTGCT 59.341 40.000 0.00 0.00 38.00 4.40
214 215 5.751028 GTGAGAAACATATAGGACAGAGTGC 59.249 44.000 0.00 0.00 0.00 4.40
215 216 6.977502 CAGTGAGAAACATATAGGACAGAGTG 59.022 42.308 0.00 0.00 0.00 3.51
216 217 6.665680 ACAGTGAGAAACATATAGGACAGAGT 59.334 38.462 0.00 0.00 0.00 3.24
217 218 7.106439 ACAGTGAGAAACATATAGGACAGAG 57.894 40.000 0.00 0.00 0.00 3.35
218 219 7.482169 AACAGTGAGAAACATATAGGACAGA 57.518 36.000 0.00 0.00 0.00 3.41
219 220 7.278868 GGAAACAGTGAGAAACATATAGGACAG 59.721 40.741 0.00 0.00 0.00 3.51
220 221 7.103641 GGAAACAGTGAGAAACATATAGGACA 58.896 38.462 0.00 0.00 0.00 4.02
221 222 7.103641 TGGAAACAGTGAGAAACATATAGGAC 58.896 38.462 0.00 0.00 35.01 3.85
222 223 7.252612 TGGAAACAGTGAGAAACATATAGGA 57.747 36.000 0.00 0.00 35.01 2.94
240 241 7.201530 CGGTCTTCAAACTACTATGATGGAAAC 60.202 40.741 0.00 0.00 0.00 2.78
241 242 6.816640 CGGTCTTCAAACTACTATGATGGAAA 59.183 38.462 0.00 0.00 0.00 3.13
242 243 6.153851 TCGGTCTTCAAACTACTATGATGGAA 59.846 38.462 0.00 0.00 0.00 3.53
243 244 5.655090 TCGGTCTTCAAACTACTATGATGGA 59.345 40.000 0.00 0.00 0.00 3.41
244 245 5.902681 TCGGTCTTCAAACTACTATGATGG 58.097 41.667 0.00 0.00 0.00 3.51
245 246 7.203218 TGATCGGTCTTCAAACTACTATGATG 58.797 38.462 0.00 0.00 0.00 3.07
246 247 7.348080 TGATCGGTCTTCAAACTACTATGAT 57.652 36.000 0.00 0.00 0.00 2.45
247 248 6.769134 TGATCGGTCTTCAAACTACTATGA 57.231 37.500 0.00 0.00 0.00 2.15
248 249 7.429633 AGATGATCGGTCTTCAAACTACTATG 58.570 38.462 13.47 0.00 32.47 2.23
325 326 8.296713 TGGAATGAACGAAATTTCCTCTAAAAG 58.703 33.333 12.54 0.00 38.73 2.27
371 372 6.808704 GCAAAAACTGAAGTATGGAAGGAATC 59.191 38.462 0.00 0.00 0.00 2.52
372 373 6.494835 AGCAAAAACTGAAGTATGGAAGGAAT 59.505 34.615 0.00 0.00 0.00 3.01
373 374 5.833131 AGCAAAAACTGAAGTATGGAAGGAA 59.167 36.000 0.00 0.00 0.00 3.36
374 375 5.385198 AGCAAAAACTGAAGTATGGAAGGA 58.615 37.500 0.00 0.00 0.00 3.36
375 376 5.712152 AGCAAAAACTGAAGTATGGAAGG 57.288 39.130 0.00 0.00 0.00 3.46
376 377 9.132521 CATAAAGCAAAAACTGAAGTATGGAAG 57.867 33.333 0.00 0.00 0.00 3.46
377 378 8.855110 TCATAAAGCAAAAACTGAAGTATGGAA 58.145 29.630 0.00 0.00 0.00 3.53
378 379 8.402798 TCATAAAGCAAAAACTGAAGTATGGA 57.597 30.769 0.00 0.00 0.00 3.41
556 564 2.053244 CCTCTGCTCCCTGTATGGAAT 58.947 52.381 0.00 0.00 38.35 3.01
1083 1312 4.675029 GTGTAGTGGCCGGTGCGT 62.675 66.667 1.90 0.00 38.85 5.24
1830 2059 4.079787 AGCAACCCAGGAATCATAAGCTTA 60.080 41.667 8.99 8.99 0.00 3.09
2288 2520 2.297701 TCTTCTTTGCAGGTGTGGAAC 58.702 47.619 0.00 0.00 33.05 3.62
2631 3019 1.352352 AGCTCCCACATAACTGCAACT 59.648 47.619 0.00 0.00 0.00 3.16
2770 3158 8.028652 TGATTGTCCAAATTTAAAGGGAAGTT 57.971 30.769 7.41 0.00 0.00 2.66
2772 3160 6.591448 GCTGATTGTCCAAATTTAAAGGGAAG 59.409 38.462 7.41 3.77 0.00 3.46
2850 3240 6.363065 CCAGTACAGGTGGACTACTAAGATA 58.637 44.000 0.00 0.00 37.23 1.98
3093 3489 9.784531 AACAAACATATATCTTCTGGTCCTATG 57.215 33.333 0.00 0.00 0.00 2.23
3162 3559 2.281414 CACCGTGCACATCCCACA 60.281 61.111 18.64 0.00 32.85 4.17
3167 3564 1.194547 CTGTTACACACCGTGCACATC 59.805 52.381 18.64 0.00 36.98 3.06
3175 3572 4.182693 TGAACTATCCTGTTACACACCG 57.817 45.455 0.00 0.00 0.00 4.94
3261 3658 8.019656 CCTAAAGATAGTAGGTTAGGCTTTCA 57.980 38.462 0.00 0.00 37.02 2.69
3303 3700 7.220875 GGAAATTTCTAAGAACCATCGCATTTC 59.779 37.037 17.42 0.00 0.00 2.17
3304 3701 7.035612 GGAAATTTCTAAGAACCATCGCATTT 58.964 34.615 17.42 0.00 0.00 2.32
3305 3702 6.152661 TGGAAATTTCTAAGAACCATCGCATT 59.847 34.615 17.42 0.00 0.00 3.56
3306 3703 5.652014 TGGAAATTTCTAAGAACCATCGCAT 59.348 36.000 17.42 0.00 0.00 4.73
3307 3704 5.007034 TGGAAATTTCTAAGAACCATCGCA 58.993 37.500 17.42 0.09 0.00 5.10
3308 3705 5.560966 TGGAAATTTCTAAGAACCATCGC 57.439 39.130 17.42 0.00 0.00 4.58
3309 3706 7.761409 TGATTGGAAATTTCTAAGAACCATCG 58.239 34.615 19.86 0.00 31.07 3.84
3310 3707 9.927668 TTTGATTGGAAATTTCTAAGAACCATC 57.072 29.630 19.86 12.70 31.07 3.51
3329 3726 8.225107 CACAGCCTTGTTATCAAAATTTGATTG 58.775 33.333 23.98 16.01 40.56 2.67
3330 3727 7.933033 ACACAGCCTTGTTATCAAAATTTGATT 59.067 29.630 23.98 10.30 40.56 2.57
3331 3728 7.444299 ACACAGCCTTGTTATCAAAATTTGAT 58.556 30.769 22.68 22.68 43.49 2.57
3332 3729 6.815089 ACACAGCCTTGTTATCAAAATTTGA 58.185 32.000 11.10 11.10 38.75 2.69
3333 3730 8.649841 CATACACAGCCTTGTTATCAAAATTTG 58.350 33.333 0.00 0.00 34.62 2.32
3334 3731 8.367156 ACATACACAGCCTTGTTATCAAAATTT 58.633 29.630 0.00 0.00 34.62 1.82
3335 3732 7.895759 ACATACACAGCCTTGTTATCAAAATT 58.104 30.769 0.00 0.00 34.62 1.82
3336 3733 7.466746 ACATACACAGCCTTGTTATCAAAAT 57.533 32.000 0.00 0.00 34.62 1.82
3337 3734 6.892658 ACATACACAGCCTTGTTATCAAAA 57.107 33.333 0.00 0.00 34.62 2.44
3338 3735 6.892658 AACATACACAGCCTTGTTATCAAA 57.107 33.333 0.00 0.00 34.62 2.69
3342 3739 7.338710 ACTGATAACATACACAGCCTTGTTAT 58.661 34.615 6.82 6.82 44.02 1.89
3343 3740 6.707290 ACTGATAACATACACAGCCTTGTTA 58.293 36.000 0.00 0.00 38.50 2.41
3344 3741 5.560724 ACTGATAACATACACAGCCTTGTT 58.439 37.500 0.00 0.00 34.62 2.83
3345 3742 5.165961 ACTGATAACATACACAGCCTTGT 57.834 39.130 0.00 0.00 38.31 3.16
3346 3743 7.609760 TTTACTGATAACATACACAGCCTTG 57.390 36.000 0.00 0.00 34.25 3.61
3347 3744 7.829211 ACATTTACTGATAACATACACAGCCTT 59.171 33.333 0.00 0.00 34.25 4.35
3348 3745 7.338710 ACATTTACTGATAACATACACAGCCT 58.661 34.615 0.00 0.00 34.25 4.58
3349 3746 7.553881 ACATTTACTGATAACATACACAGCC 57.446 36.000 0.00 0.00 34.25 4.85
3350 3747 9.314321 ACTACATTTACTGATAACATACACAGC 57.686 33.333 0.00 0.00 34.25 4.40
3352 3749 9.594478 CCACTACATTTACTGATAACATACACA 57.406 33.333 0.00 0.00 0.00 3.72
3353 3750 9.811995 TCCACTACATTTACTGATAACATACAC 57.188 33.333 0.00 0.00 0.00 2.90
3381 3778 2.635427 GGACAACTAATGGGGGCAAAAA 59.365 45.455 0.00 0.00 0.00 1.94
3382 3779 2.252714 GGACAACTAATGGGGGCAAAA 58.747 47.619 0.00 0.00 0.00 2.44
3383 3780 1.148027 TGGACAACTAATGGGGGCAAA 59.852 47.619 0.00 0.00 0.00 3.68
3384 3781 0.780637 TGGACAACTAATGGGGGCAA 59.219 50.000 0.00 0.00 0.00 4.52
3385 3782 0.039035 GTGGACAACTAATGGGGGCA 59.961 55.000 0.00 0.00 0.00 5.36
3386 3783 0.331616 AGTGGACAACTAATGGGGGC 59.668 55.000 0.00 0.00 37.36 5.80
3387 3784 1.916181 AGAGTGGACAACTAATGGGGG 59.084 52.381 0.00 0.00 40.07 5.40
3388 3785 2.840651 AGAGAGTGGACAACTAATGGGG 59.159 50.000 0.00 0.00 40.07 4.96
3389 3786 3.118592 GGAGAGAGTGGACAACTAATGGG 60.119 52.174 0.00 0.00 40.07 4.00
3390 3787 3.515502 TGGAGAGAGTGGACAACTAATGG 59.484 47.826 0.00 0.00 40.07 3.16
3391 3788 4.221703 ACTGGAGAGAGTGGACAACTAATG 59.778 45.833 0.00 0.00 40.07 1.90
3392 3789 4.421131 ACTGGAGAGAGTGGACAACTAAT 58.579 43.478 0.00 0.00 40.07 1.73
3393 3790 3.827302 GACTGGAGAGAGTGGACAACTAA 59.173 47.826 0.00 0.00 40.07 2.24
3394 3791 3.422796 GACTGGAGAGAGTGGACAACTA 58.577 50.000 0.00 0.00 40.07 2.24
3395 3792 2.243810 GACTGGAGAGAGTGGACAACT 58.756 52.381 0.00 0.00 43.85 3.16
3396 3793 1.273886 GGACTGGAGAGAGTGGACAAC 59.726 57.143 0.00 0.00 0.00 3.32
3397 3794 1.133167 TGGACTGGAGAGAGTGGACAA 60.133 52.381 0.00 0.00 0.00 3.18
3398 3795 0.482887 TGGACTGGAGAGAGTGGACA 59.517 55.000 0.00 0.00 0.00 4.02
3399 3796 0.892063 GTGGACTGGAGAGAGTGGAC 59.108 60.000 0.00 0.00 0.00 4.02
3400 3797 0.780637 AGTGGACTGGAGAGAGTGGA 59.219 55.000 0.00 0.00 0.00 4.02
3401 3798 0.894141 CAGTGGACTGGAGAGAGTGG 59.106 60.000 0.00 0.00 40.20 4.00
3412 3809 3.006323 CAGAAGCTTCAGTACAGTGGACT 59.994 47.826 27.57 0.73 0.00 3.85
3413 3810 3.321497 CAGAAGCTTCAGTACAGTGGAC 58.679 50.000 27.57 0.00 0.00 4.02
3414 3811 2.300152 CCAGAAGCTTCAGTACAGTGGA 59.700 50.000 27.57 0.00 0.00 4.02
3415 3812 2.693069 CCAGAAGCTTCAGTACAGTGG 58.307 52.381 27.57 19.47 0.00 4.00
3416 3813 2.072298 GCCAGAAGCTTCAGTACAGTG 58.928 52.381 27.57 14.76 38.99 3.66
3417 3814 2.464157 GCCAGAAGCTTCAGTACAGT 57.536 50.000 27.57 2.61 38.99 3.55
3433 3830 0.968405 GGTTGAAGATTGGCAAGCCA 59.032 50.000 12.53 10.24 45.63 4.75
3434 3831 1.067354 CAGGTTGAAGATTGGCAAGCC 60.067 52.381 12.53 3.61 41.90 4.35
3435 3832 1.670967 GCAGGTTGAAGATTGGCAAGC 60.671 52.381 7.54 7.54 41.43 4.01
3436 3833 1.891150 AGCAGGTTGAAGATTGGCAAG 59.109 47.619 5.96 0.00 0.00 4.01
3437 3834 1.999648 AGCAGGTTGAAGATTGGCAA 58.000 45.000 0.68 0.68 0.00 4.52
3438 3835 2.877097 TAGCAGGTTGAAGATTGGCA 57.123 45.000 0.00 0.00 0.00 4.92
3439 3836 4.725790 AAATAGCAGGTTGAAGATTGGC 57.274 40.909 0.00 0.00 0.00 4.52
3440 3837 4.866486 GCAAAATAGCAGGTTGAAGATTGG 59.134 41.667 0.00 0.00 0.00 3.16
3441 3838 5.575606 CAGCAAAATAGCAGGTTGAAGATTG 59.424 40.000 0.00 0.00 36.85 2.67
3442 3839 5.477984 TCAGCAAAATAGCAGGTTGAAGATT 59.522 36.000 0.00 0.00 36.85 2.40
3443 3840 5.012239 TCAGCAAAATAGCAGGTTGAAGAT 58.988 37.500 0.00 0.00 36.85 2.40
3444 3841 4.397420 TCAGCAAAATAGCAGGTTGAAGA 58.603 39.130 0.00 0.00 36.85 2.87
3445 3842 4.771590 TCAGCAAAATAGCAGGTTGAAG 57.228 40.909 0.00 0.00 36.85 3.02
3446 3843 7.340232 AGAATATCAGCAAAATAGCAGGTTGAA 59.660 33.333 0.00 0.00 36.85 2.69
3447 3844 6.830324 AGAATATCAGCAAAATAGCAGGTTGA 59.170 34.615 0.00 0.00 36.85 3.18
3448 3845 7.035840 AGAATATCAGCAAAATAGCAGGTTG 57.964 36.000 0.00 0.00 36.85 3.77
3449 3846 7.651027 AAGAATATCAGCAAAATAGCAGGTT 57.349 32.000 0.00 0.00 36.85 3.50
3450 3847 8.624776 GTTAAGAATATCAGCAAAATAGCAGGT 58.375 33.333 0.00 0.00 36.85 4.00
3451 3848 8.078596 GGTTAAGAATATCAGCAAAATAGCAGG 58.921 37.037 0.00 0.00 36.85 4.85
3452 3849 8.844244 AGGTTAAGAATATCAGCAAAATAGCAG 58.156 33.333 0.00 0.00 36.85 4.24
3453 3850 8.623903 CAGGTTAAGAATATCAGCAAAATAGCA 58.376 33.333 0.00 0.00 36.85 3.49
3454 3851 7.592903 GCAGGTTAAGAATATCAGCAAAATAGC 59.407 37.037 0.00 0.00 0.00 2.97
3455 3852 8.623903 TGCAGGTTAAGAATATCAGCAAAATAG 58.376 33.333 0.00 0.00 0.00 1.73
3456 3853 8.518430 TGCAGGTTAAGAATATCAGCAAAATA 57.482 30.769 0.00 0.00 0.00 1.40
3457 3854 7.123247 ACTGCAGGTTAAGAATATCAGCAAAAT 59.877 33.333 19.93 0.00 0.00 1.82
3458 3855 6.434028 ACTGCAGGTTAAGAATATCAGCAAAA 59.566 34.615 19.93 0.00 0.00 2.44
3459 3856 5.945784 ACTGCAGGTTAAGAATATCAGCAAA 59.054 36.000 19.93 0.00 0.00 3.68
3460 3857 5.500234 ACTGCAGGTTAAGAATATCAGCAA 58.500 37.500 19.93 0.00 0.00 3.91
3461 3858 5.102953 ACTGCAGGTTAAGAATATCAGCA 57.897 39.130 19.93 0.00 0.00 4.41
3462 3859 6.516718 TCTACTGCAGGTTAAGAATATCAGC 58.483 40.000 19.93 0.00 0.00 4.26
3463 3860 8.948631 TTTCTACTGCAGGTTAAGAATATCAG 57.051 34.615 19.93 0.00 0.00 2.90
3464 3861 9.733556 TTTTTCTACTGCAGGTTAAGAATATCA 57.266 29.630 19.93 3.99 0.00 2.15
3487 3884 9.628500 GTGGAAGTATTATGACTAGGGATTTTT 57.372 33.333 0.00 0.00 0.00 1.94
3488 3885 8.218488 GGTGGAAGTATTATGACTAGGGATTTT 58.782 37.037 0.00 0.00 0.00 1.82
3489 3886 7.349859 TGGTGGAAGTATTATGACTAGGGATTT 59.650 37.037 0.00 0.00 0.00 2.17
3490 3887 6.849697 TGGTGGAAGTATTATGACTAGGGATT 59.150 38.462 0.00 0.00 0.00 3.01
3491 3888 6.270231 GTGGTGGAAGTATTATGACTAGGGAT 59.730 42.308 0.00 0.00 0.00 3.85
3492 3889 5.601313 GTGGTGGAAGTATTATGACTAGGGA 59.399 44.000 0.00 0.00 0.00 4.20
3493 3890 5.365605 TGTGGTGGAAGTATTATGACTAGGG 59.634 44.000 0.00 0.00 0.00 3.53
3494 3891 6.479972 TGTGGTGGAAGTATTATGACTAGG 57.520 41.667 0.00 0.00 0.00 3.02
3497 3894 9.342308 CATTAATGTGGTGGAAGTATTATGACT 57.658 33.333 7.32 0.00 0.00 3.41
3498 3895 9.120538 ACATTAATGTGGTGGAAGTATTATGAC 57.879 33.333 20.19 0.00 40.03 3.06
3515 3912 7.370383 AGAAAATCAAGTTCGCACATTAATGT 58.630 30.769 15.47 15.47 42.84 2.71
3516 3913 7.801547 AGAAAATCAAGTTCGCACATTAATG 57.198 32.000 14.01 14.01 0.00 1.90
3517 3914 7.968405 GGTAGAAAATCAAGTTCGCACATTAAT 59.032 33.333 0.00 0.00 0.00 1.40
3518 3915 7.174253 AGGTAGAAAATCAAGTTCGCACATTAA 59.826 33.333 0.00 0.00 0.00 1.40
3519 3916 6.653320 AGGTAGAAAATCAAGTTCGCACATTA 59.347 34.615 0.00 0.00 0.00 1.90
3520 3917 5.473504 AGGTAGAAAATCAAGTTCGCACATT 59.526 36.000 0.00 0.00 0.00 2.71
3521 3918 5.003804 AGGTAGAAAATCAAGTTCGCACAT 58.996 37.500 0.00 0.00 0.00 3.21
3522 3919 4.385825 AGGTAGAAAATCAAGTTCGCACA 58.614 39.130 0.00 0.00 0.00 4.57
3523 3920 5.147162 CAAGGTAGAAAATCAAGTTCGCAC 58.853 41.667 0.00 0.00 0.00 5.34
3524 3921 4.320202 GCAAGGTAGAAAATCAAGTTCGCA 60.320 41.667 0.00 0.00 0.00 5.10
3525 3922 4.083271 AGCAAGGTAGAAAATCAAGTTCGC 60.083 41.667 0.00 0.00 0.00 4.70
3526 3923 5.179368 TCAGCAAGGTAGAAAATCAAGTTCG 59.821 40.000 0.00 0.00 0.00 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.