Multiple sequence alignment - TraesCS2D01G154400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G154400 chr2D 100.000 3472 0 0 1 3472 97603502 97606973 0.000000e+00 6412.0
1 TraesCS2D01G154400 chr2D 98.706 1314 12 1 1637 2945 114803172 114804485 0.000000e+00 2327.0
2 TraesCS2D01G154400 chr2D 98.782 985 9 2 639 1621 114802123 114803106 0.000000e+00 1749.0
3 TraesCS2D01G154400 chr2D 98.672 979 10 3 645 1621 459830858 459831835 0.000000e+00 1733.0
4 TraesCS2D01G154400 chr2D 92.295 1168 46 25 1865 3012 459832054 459833197 0.000000e+00 1618.0
5 TraesCS2D01G154400 chr2D 96.539 838 7 1 2657 3472 114804496 114805333 0.000000e+00 1367.0
6 TraesCS2D01G154400 chr2D 88.474 616 20 14 2604 3191 459832855 459833447 0.000000e+00 697.0
7 TraesCS2D01G154400 chr2D 98.611 360 5 0 3113 3472 459833421 459833780 3.780000e-179 638.0
8 TraesCS2D01G154400 chr2D 100.000 33 0 0 547 579 97611284 97611316 1.040000e-05 62.1
9 TraesCS2D01G154400 chr3D 96.764 2256 18 6 645 2884 66252767 66254983 0.000000e+00 3711.0
10 TraesCS2D01G154400 chr3D 97.671 1417 17 4 1610 3012 406152641 406151227 0.000000e+00 2420.0
11 TraesCS2D01G154400 chr3D 98.779 983 5 2 645 1621 406153653 406152672 0.000000e+00 1742.0
12 TraesCS2D01G154400 chr3D 97.764 984 14 3 645 1621 114397630 114396648 0.000000e+00 1688.0
13 TraesCS2D01G154400 chr3D 94.925 729 14 2 2761 3467 595951075 595950348 0.000000e+00 1120.0
14 TraesCS2D01G154400 chr3D 93.791 757 11 11 2752 3472 406151340 406150584 0.000000e+00 1105.0
15 TraesCS2D01G154400 chr3D 92.904 761 17 12 2748 3472 66255407 66256166 0.000000e+00 1072.0
16 TraesCS2D01G154400 chr3D 93.581 701 9 11 2808 3472 406150512 406149812 0.000000e+00 1013.0
17 TraesCS2D01G154400 chr3D 92.031 389 9 1 2839 3205 114394679 114394291 8.540000e-146 527.0
18 TraesCS2D01G154400 chr7D 92.988 2410 66 50 641 3012 510435085 510432741 0.000000e+00 3419.0
19 TraesCS2D01G154400 chr7D 97.546 978 21 3 645 1621 370966230 370965255 0.000000e+00 1670.0
20 TraesCS2D01G154400 chr7D 93.976 747 11 3 2748 3472 510432808 510432074 0.000000e+00 1099.0
21 TraesCS2D01G154400 chr7D 92.569 471 13 1 2757 3205 370962053 370961583 0.000000e+00 656.0
22 TraesCS2D01G154400 chr6D 95.952 2075 26 27 645 2671 400784512 400786576 0.000000e+00 3314.0
23 TraesCS2D01G154400 chr6D 97.958 1420 14 3 1607 3012 469311019 469312437 0.000000e+00 2447.0
24 TraesCS2D01G154400 chr6D 98.574 982 9 2 644 1621 469310011 469310991 0.000000e+00 1731.0
25 TraesCS2D01G154400 chr6D 97.586 994 13 4 638 1621 81150549 81149557 0.000000e+00 1692.0
26 TraesCS2D01G154400 chr6D 94.110 747 10 3 2748 3472 469312321 469313055 0.000000e+00 1105.0
27 TraesCS2D01G154400 chr6D 92.746 386 6 3 2842 3205 81147937 81147552 3.940000e-149 538.0
28 TraesCS2D01G154400 chr6D 92.632 190 3 3 1610 1790 81149526 81149339 2.660000e-66 263.0
29 TraesCS2D01G154400 chr6D 90.674 193 7 3 1607 1790 445312937 445313127 2.680000e-61 246.0
30 TraesCS2D01G154400 chr6D 83.803 284 17 12 2604 2881 400786629 400786889 3.460000e-60 243.0
31 TraesCS2D01G154400 chr6D 100.000 44 0 0 1823 1866 81149277 81149234 7.990000e-12 82.4
32 TraesCS2D01G154400 chr6D 97.872 47 1 0 1820 1866 400785829 400785875 7.990000e-12 82.4
33 TraesCS2D01G154400 chr5D 96.189 1417 22 8 1610 3012 58671889 58670491 0.000000e+00 2289.0
34 TraesCS2D01G154400 chr5D 98.776 980 8 3 645 1621 58672898 58671920 0.000000e+00 1740.0
35 TraesCS2D01G154400 chr5D 95.047 747 13 3 2748 3472 58670607 58669863 0.000000e+00 1153.0
36 TraesCS2D01G154400 chr4D 95.210 1169 26 21 645 1790 469101972 469103133 0.000000e+00 1821.0
37 TraesCS2D01G154400 chr4D 95.771 875 17 13 1859 2722 469103128 469103993 0.000000e+00 1393.0
38 TraesCS2D01G154400 chr4D 92.632 190 3 3 1610 1790 414635096 414634909 2.660000e-66 263.0
39 TraesCS2D01G154400 chrUn 100.000 618 0 0 2855 3472 439908888 439909505 0.000000e+00 1142.0
40 TraesCS2D01G154400 chr1D 85.303 347 22 8 2604 2944 414457302 414456979 7.180000e-87 331.0
41 TraesCS2D01G154400 chr1D 88.095 84 0 2 1610 1684 414480948 414480866 1.330000e-14 91.6
42 TraesCS2D01G154400 chr1D 85.714 84 2 2 1610 1684 276512468 276512386 2.870000e-11 80.5
43 TraesCS2D01G154400 chr1A 88.356 146 5 5 1607 1741 1316709 1316853 7.710000e-37 165.0
44 TraesCS2D01G154400 chr2B 88.764 89 9 1 2 90 148590757 148590844 1.320000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G154400 chr2D 97603502 97606973 3471 False 6412.000000 6412 100.000000 1 3472 1 chr2D.!!$F1 3471
1 TraesCS2D01G154400 chr2D 114802123 114805333 3210 False 1814.333333 2327 98.009000 639 3472 3 chr2D.!!$F3 2833
2 TraesCS2D01G154400 chr2D 459830858 459833780 2922 False 1171.500000 1733 94.513000 645 3472 4 chr2D.!!$F4 2827
3 TraesCS2D01G154400 chr3D 66252767 66256166 3399 False 2391.500000 3711 94.834000 645 3472 2 chr3D.!!$F1 2827
4 TraesCS2D01G154400 chr3D 406149812 406153653 3841 True 1570.000000 2420 95.955500 645 3472 4 chr3D.!!$R3 2827
5 TraesCS2D01G154400 chr3D 595950348 595951075 727 True 1120.000000 1120 94.925000 2761 3467 1 chr3D.!!$R1 706
6 TraesCS2D01G154400 chr3D 114394291 114397630 3339 True 1107.500000 1688 94.897500 645 3205 2 chr3D.!!$R2 2560
7 TraesCS2D01G154400 chr7D 510432074 510435085 3011 True 2259.000000 3419 93.482000 641 3472 2 chr7D.!!$R2 2831
8 TraesCS2D01G154400 chr7D 370961583 370966230 4647 True 1163.000000 1670 95.057500 645 3205 2 chr7D.!!$R1 2560
9 TraesCS2D01G154400 chr6D 469310011 469313055 3044 False 1761.000000 2447 96.880667 644 3472 3 chr6D.!!$F3 2828
10 TraesCS2D01G154400 chr6D 400784512 400786889 2377 False 1213.133333 3314 92.542333 645 2881 3 chr6D.!!$F2 2236
11 TraesCS2D01G154400 chr6D 81147552 81150549 2997 True 643.850000 1692 95.741000 638 3205 4 chr6D.!!$R1 2567
12 TraesCS2D01G154400 chr5D 58669863 58672898 3035 True 1727.333333 2289 96.670667 645 3472 3 chr5D.!!$R1 2827
13 TraesCS2D01G154400 chr4D 469101972 469103993 2021 False 1607.000000 1821 95.490500 645 2722 2 chr4D.!!$F1 2077
14 TraesCS2D01G154400 chrUn 439908888 439909505 617 False 1142.000000 1142 100.000000 2855 3472 1 chrUn.!!$F1 617

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
342 343 0.024238 CTCGCGCTGTCAATTTCGAG 59.976 55.0 5.56 0.0 37.65 4.04 F
410 411 0.174617 GCAGCGGCTCTACTTTCTCT 59.825 55.0 0.00 0.0 36.96 3.10 F
498 499 0.316841 TTTCATGGAACGGCTTTGCC 59.683 50.0 0.00 0.0 46.75 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2018 2139 1.967779 TGCCATCCTATTAGCACGCTA 59.032 47.619 0.0 0.0 0.0 4.26 R
2438 2564 5.924356 TCGCAAATATCCTTGATGTCCTTA 58.076 37.500 0.0 0.0 0.0 2.69 R
2547 2673 5.473504 CCCTACTTCAAATACTGCAAACTGT 59.526 40.000 0.0 0.0 0.0 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.740397 CAGTGGGCATGCCGTGTG 61.740 66.667 29.90 21.30 36.85 3.82
46 47 1.730501 CGAAGCCATTCAGAAGCTCA 58.269 50.000 0.00 0.00 35.30 4.26
47 48 1.396301 CGAAGCCATTCAGAAGCTCAC 59.604 52.381 0.00 0.00 35.30 3.51
48 49 1.396301 GAAGCCATTCAGAAGCTCACG 59.604 52.381 0.00 0.00 35.30 4.35
49 50 0.392193 AGCCATTCAGAAGCTCACGG 60.392 55.000 0.00 0.00 28.40 4.94
50 51 1.986575 GCCATTCAGAAGCTCACGGC 61.987 60.000 0.00 0.00 42.19 5.68
51 52 1.372087 CCATTCAGAAGCTCACGGCC 61.372 60.000 0.00 0.00 43.05 6.13
52 53 0.674581 CATTCAGAAGCTCACGGCCA 60.675 55.000 2.24 0.00 43.05 5.36
53 54 0.674895 ATTCAGAAGCTCACGGCCAC 60.675 55.000 2.24 0.00 43.05 5.01
54 55 2.731691 TTCAGAAGCTCACGGCCACC 62.732 60.000 2.24 0.00 43.05 4.61
55 56 2.925170 AGAAGCTCACGGCCACCT 60.925 61.111 2.24 0.00 43.05 4.00
56 57 2.743928 GAAGCTCACGGCCACCTG 60.744 66.667 2.24 0.00 43.05 4.00
57 58 3.537206 GAAGCTCACGGCCACCTGT 62.537 63.158 2.24 0.00 43.05 4.00
58 59 3.832237 AAGCTCACGGCCACCTGTG 62.832 63.158 2.24 2.29 43.05 3.66
83 84 2.126071 CGGCATCGTCCGTCAACT 60.126 61.111 5.59 0.00 44.18 3.16
84 85 2.158959 CGGCATCGTCCGTCAACTC 61.159 63.158 5.59 0.00 44.18 3.01
85 86 1.215647 GGCATCGTCCGTCAACTCT 59.784 57.895 0.00 0.00 0.00 3.24
86 87 0.389948 GGCATCGTCCGTCAACTCTT 60.390 55.000 0.00 0.00 0.00 2.85
87 88 1.429463 GCATCGTCCGTCAACTCTTT 58.571 50.000 0.00 0.00 0.00 2.52
88 89 1.798813 GCATCGTCCGTCAACTCTTTT 59.201 47.619 0.00 0.00 0.00 2.27
89 90 2.223377 GCATCGTCCGTCAACTCTTTTT 59.777 45.455 0.00 0.00 0.00 1.94
123 124 9.204570 TGTTTTCTAGAAGTATTAACTGACTGC 57.795 33.333 14.82 0.00 35.62 4.40
124 125 9.425577 GTTTTCTAGAAGTATTAACTGACTGCT 57.574 33.333 5.12 1.24 35.61 4.24
125 126 8.988064 TTTCTAGAAGTATTAACTGACTGCTG 57.012 34.615 5.12 0.00 33.38 4.41
126 127 7.704578 TCTAGAAGTATTAACTGACTGCTGT 57.295 36.000 0.00 0.00 33.38 4.40
127 128 7.763356 TCTAGAAGTATTAACTGACTGCTGTC 58.237 38.462 16.18 16.18 43.20 3.51
139 140 4.152607 GACTGCTGTCAGATTTTTGTCC 57.847 45.455 17.89 0.00 42.95 4.02
140 141 3.817647 GACTGCTGTCAGATTTTTGTCCT 59.182 43.478 17.89 0.00 42.95 3.85
141 142 4.210331 ACTGCTGTCAGATTTTTGTCCTT 58.790 39.130 3.32 0.00 42.95 3.36
142 143 4.276926 ACTGCTGTCAGATTTTTGTCCTTC 59.723 41.667 3.32 0.00 42.95 3.46
143 144 3.569701 TGCTGTCAGATTTTTGTCCTTCC 59.430 43.478 3.32 0.00 0.00 3.46
144 145 3.569701 GCTGTCAGATTTTTGTCCTTCCA 59.430 43.478 3.32 0.00 0.00 3.53
145 146 4.320788 GCTGTCAGATTTTTGTCCTTCCAG 60.321 45.833 3.32 0.00 0.00 3.86
146 147 3.569701 TGTCAGATTTTTGTCCTTCCAGC 59.430 43.478 0.00 0.00 0.00 4.85
147 148 2.813754 TCAGATTTTTGTCCTTCCAGCG 59.186 45.455 0.00 0.00 0.00 5.18
148 149 2.813754 CAGATTTTTGTCCTTCCAGCGA 59.186 45.455 0.00 0.00 0.00 4.93
149 150 3.253188 CAGATTTTTGTCCTTCCAGCGAA 59.747 43.478 0.00 0.00 0.00 4.70
150 151 3.253432 AGATTTTTGTCCTTCCAGCGAAC 59.747 43.478 0.00 0.00 0.00 3.95
151 152 2.045561 TTTTGTCCTTCCAGCGAACA 57.954 45.000 0.00 0.00 0.00 3.18
152 153 1.305201 TTTGTCCTTCCAGCGAACAC 58.695 50.000 0.00 0.00 0.00 3.32
153 154 0.878523 TTGTCCTTCCAGCGAACACG 60.879 55.000 0.00 0.00 0.00 4.49
154 155 1.300697 GTCCTTCCAGCGAACACGT 60.301 57.895 0.00 0.00 0.00 4.49
155 156 1.006571 TCCTTCCAGCGAACACGTC 60.007 57.895 0.00 0.00 0.00 4.34
156 157 1.300620 CCTTCCAGCGAACACGTCA 60.301 57.895 0.00 0.00 0.00 4.35
157 158 1.284982 CCTTCCAGCGAACACGTCAG 61.285 60.000 0.00 0.00 0.00 3.51
158 159 0.597637 CTTCCAGCGAACACGTCAGT 60.598 55.000 0.00 0.00 0.00 3.41
159 160 0.179094 TTCCAGCGAACACGTCAGTT 60.179 50.000 0.00 0.00 0.00 3.16
160 161 0.669619 TCCAGCGAACACGTCAGTTA 59.330 50.000 0.00 0.00 0.00 2.24
161 162 1.271379 TCCAGCGAACACGTCAGTTAT 59.729 47.619 0.00 0.00 0.00 1.89
162 163 1.654105 CCAGCGAACACGTCAGTTATC 59.346 52.381 0.00 0.00 0.00 1.75
163 164 1.317611 CAGCGAACACGTCAGTTATCG 59.682 52.381 0.00 0.00 38.29 2.92
164 165 1.068748 AGCGAACACGTCAGTTATCGT 60.069 47.619 0.00 0.00 37.85 3.73
165 166 1.717645 GCGAACACGTCAGTTATCGTT 59.282 47.619 0.00 0.00 37.85 3.85
166 167 2.470140 GCGAACACGTCAGTTATCGTTG 60.470 50.000 0.00 0.00 37.85 4.10
167 168 2.090041 CGAACACGTCAGTTATCGTTGG 59.910 50.000 0.00 0.00 38.23 3.77
168 169 3.311106 GAACACGTCAGTTATCGTTGGA 58.689 45.455 0.00 0.00 38.23 3.53
169 170 3.587797 ACACGTCAGTTATCGTTGGAT 57.412 42.857 0.00 0.00 38.23 3.41
170 171 3.250744 ACACGTCAGTTATCGTTGGATG 58.749 45.455 0.00 0.00 38.23 3.51
171 172 3.057104 ACACGTCAGTTATCGTTGGATGA 60.057 43.478 0.00 0.00 38.23 2.92
172 173 3.547868 CACGTCAGTTATCGTTGGATGAG 59.452 47.826 0.00 0.00 38.23 2.90
173 174 3.442625 ACGTCAGTTATCGTTGGATGAGA 59.557 43.478 0.00 0.00 36.93 3.27
174 175 4.098044 ACGTCAGTTATCGTTGGATGAGAT 59.902 41.667 0.00 0.00 36.93 2.75
175 176 5.043903 CGTCAGTTATCGTTGGATGAGATT 58.956 41.667 0.00 0.00 34.00 2.40
176 177 5.051441 CGTCAGTTATCGTTGGATGAGATTG 60.051 44.000 0.00 0.00 34.00 2.67
177 178 6.042777 GTCAGTTATCGTTGGATGAGATTGA 58.957 40.000 0.00 0.00 34.00 2.57
178 179 6.199908 GTCAGTTATCGTTGGATGAGATTGAG 59.800 42.308 0.00 0.00 34.00 3.02
179 180 6.096846 TCAGTTATCGTTGGATGAGATTGAGA 59.903 38.462 0.00 0.00 34.00 3.27
180 181 6.199908 CAGTTATCGTTGGATGAGATTGAGAC 59.800 42.308 0.00 0.00 34.00 3.36
181 182 4.743057 ATCGTTGGATGAGATTGAGACA 57.257 40.909 0.00 0.00 0.00 3.41
182 183 3.849911 TCGTTGGATGAGATTGAGACAC 58.150 45.455 0.00 0.00 0.00 3.67
183 184 3.258123 TCGTTGGATGAGATTGAGACACA 59.742 43.478 0.00 0.00 0.00 3.72
184 185 3.369147 CGTTGGATGAGATTGAGACACAC 59.631 47.826 0.00 0.00 0.00 3.82
185 186 3.236632 TGGATGAGATTGAGACACACG 57.763 47.619 0.00 0.00 0.00 4.49
186 187 2.825532 TGGATGAGATTGAGACACACGA 59.174 45.455 0.00 0.00 0.00 4.35
187 188 3.258123 TGGATGAGATTGAGACACACGAA 59.742 43.478 0.00 0.00 0.00 3.85
188 189 4.081476 TGGATGAGATTGAGACACACGAAT 60.081 41.667 0.00 0.00 0.00 3.34
189 190 4.505922 GGATGAGATTGAGACACACGAATC 59.494 45.833 0.00 0.00 0.00 2.52
190 191 4.790765 TGAGATTGAGACACACGAATCT 57.209 40.909 0.00 0.00 36.22 2.40
191 192 5.139435 TGAGATTGAGACACACGAATCTT 57.861 39.130 0.00 0.00 34.81 2.40
192 193 4.925646 TGAGATTGAGACACACGAATCTTG 59.074 41.667 0.00 0.00 34.81 3.02
193 194 5.139435 AGATTGAGACACACGAATCTTGA 57.861 39.130 0.00 0.00 32.55 3.02
194 195 5.728471 AGATTGAGACACACGAATCTTGAT 58.272 37.500 0.00 0.00 32.55 2.57
195 196 5.579904 AGATTGAGACACACGAATCTTGATG 59.420 40.000 0.00 0.00 32.55 3.07
196 197 4.257267 TGAGACACACGAATCTTGATGT 57.743 40.909 0.00 0.00 0.00 3.06
197 198 5.385509 TGAGACACACGAATCTTGATGTA 57.614 39.130 0.00 0.00 0.00 2.29
198 199 5.778862 TGAGACACACGAATCTTGATGTAA 58.221 37.500 0.00 0.00 0.00 2.41
199 200 5.863935 TGAGACACACGAATCTTGATGTAAG 59.136 40.000 0.00 0.00 37.76 2.34
200 201 5.171476 AGACACACGAATCTTGATGTAAGG 58.829 41.667 0.00 0.00 37.01 2.69
201 202 5.047306 AGACACACGAATCTTGATGTAAGGA 60.047 40.000 0.00 0.00 37.01 3.36
202 203 5.171476 ACACACGAATCTTGATGTAAGGAG 58.829 41.667 0.00 0.00 37.01 3.69
203 204 4.033358 CACACGAATCTTGATGTAAGGAGC 59.967 45.833 0.00 0.00 37.01 4.70
204 205 4.183865 CACGAATCTTGATGTAAGGAGCA 58.816 43.478 0.00 0.00 37.01 4.26
205 206 4.813161 CACGAATCTTGATGTAAGGAGCAT 59.187 41.667 0.00 0.00 37.01 3.79
206 207 5.295292 CACGAATCTTGATGTAAGGAGCATT 59.705 40.000 0.00 0.00 37.01 3.56
207 208 5.295292 ACGAATCTTGATGTAAGGAGCATTG 59.705 40.000 0.00 0.00 37.01 2.82
208 209 5.511234 AATCTTGATGTAAGGAGCATTGC 57.489 39.130 0.00 0.00 37.01 3.56
209 210 3.282021 TCTTGATGTAAGGAGCATTGCC 58.718 45.455 4.70 0.00 37.01 4.52
210 211 2.804986 TGATGTAAGGAGCATTGCCA 57.195 45.000 4.70 0.00 0.00 4.92
211 212 3.301794 TGATGTAAGGAGCATTGCCAT 57.698 42.857 4.70 0.09 0.00 4.40
212 213 2.953648 TGATGTAAGGAGCATTGCCATG 59.046 45.455 4.70 0.00 0.00 3.66
213 214 7.951867 CTTGATGTAAGGAGCATTGCCATGC 62.952 48.000 14.69 14.69 43.11 4.06
244 245 3.751479 AAAAACATTCCCTGAACTGGC 57.249 42.857 0.00 0.00 0.00 4.85
245 246 2.683211 AAACATTCCCTGAACTGGCT 57.317 45.000 0.00 0.00 0.00 4.75
246 247 2.683211 AACATTCCCTGAACTGGCTT 57.317 45.000 0.00 0.00 0.00 4.35
247 248 2.206576 ACATTCCCTGAACTGGCTTC 57.793 50.000 0.00 0.00 0.00 3.86
248 249 1.707427 ACATTCCCTGAACTGGCTTCT 59.293 47.619 0.00 0.00 0.00 2.85
249 250 2.912956 ACATTCCCTGAACTGGCTTCTA 59.087 45.455 0.00 0.00 0.00 2.10
250 251 3.525199 ACATTCCCTGAACTGGCTTCTAT 59.475 43.478 0.00 0.00 0.00 1.98
251 252 4.721776 ACATTCCCTGAACTGGCTTCTATA 59.278 41.667 0.00 0.00 0.00 1.31
252 253 4.755266 TTCCCTGAACTGGCTTCTATAC 57.245 45.455 0.00 0.00 0.00 1.47
253 254 2.693591 TCCCTGAACTGGCTTCTATACG 59.306 50.000 0.00 0.00 0.00 3.06
254 255 2.224066 CCCTGAACTGGCTTCTATACGG 60.224 54.545 0.00 0.00 0.00 4.02
255 256 2.693591 CCTGAACTGGCTTCTATACGGA 59.306 50.000 0.00 0.00 0.00 4.69
256 257 3.491104 CCTGAACTGGCTTCTATACGGAC 60.491 52.174 0.00 0.00 0.00 4.79
257 258 2.098607 TGAACTGGCTTCTATACGGACG 59.901 50.000 0.00 0.00 0.00 4.79
258 259 2.048444 ACTGGCTTCTATACGGACGA 57.952 50.000 0.00 0.00 0.00 4.20
259 260 2.372264 ACTGGCTTCTATACGGACGAA 58.628 47.619 0.00 0.00 0.00 3.85
260 261 2.957006 ACTGGCTTCTATACGGACGAAT 59.043 45.455 0.00 0.00 0.00 3.34
261 262 3.004524 ACTGGCTTCTATACGGACGAATC 59.995 47.826 0.00 0.00 0.00 2.52
262 263 2.031420 TGGCTTCTATACGGACGAATCG 60.031 50.000 0.00 0.00 0.00 3.34
263 264 2.225019 GGCTTCTATACGGACGAATCGA 59.775 50.000 10.55 0.00 0.00 3.59
264 265 3.224750 GCTTCTATACGGACGAATCGAC 58.775 50.000 10.55 2.33 0.00 4.20
265 266 3.808095 CTTCTATACGGACGAATCGACC 58.192 50.000 10.55 12.40 38.21 4.79
266 267 3.117491 TCTATACGGACGAATCGACCT 57.883 47.619 20.27 10.87 39.29 3.85
267 268 4.257267 TCTATACGGACGAATCGACCTA 57.743 45.455 20.27 12.45 39.29 3.08
268 269 4.825422 TCTATACGGACGAATCGACCTAT 58.175 43.478 20.27 17.28 39.29 2.57
269 270 4.867047 TCTATACGGACGAATCGACCTATC 59.133 45.833 20.27 2.31 39.29 2.08
270 271 1.964552 ACGGACGAATCGACCTATCT 58.035 50.000 20.27 0.00 39.29 1.98
271 272 1.872313 ACGGACGAATCGACCTATCTC 59.128 52.381 20.27 0.89 39.29 2.75
272 273 1.197264 CGGACGAATCGACCTATCTCC 59.803 57.143 20.27 9.02 39.29 3.71
273 274 2.506444 GGACGAATCGACCTATCTCCT 58.494 52.381 16.24 0.00 38.50 3.69
274 275 2.885894 GGACGAATCGACCTATCTCCTT 59.114 50.000 16.24 0.00 38.50 3.36
275 276 3.318557 GGACGAATCGACCTATCTCCTTT 59.681 47.826 16.24 0.00 38.50 3.11
276 277 4.538917 GACGAATCGACCTATCTCCTTTC 58.461 47.826 10.55 0.00 0.00 2.62
277 278 4.208746 ACGAATCGACCTATCTCCTTTCT 58.791 43.478 10.55 0.00 0.00 2.52
278 279 4.276431 ACGAATCGACCTATCTCCTTTCTC 59.724 45.833 10.55 0.00 0.00 2.87
279 280 4.517453 CGAATCGACCTATCTCCTTTCTCT 59.483 45.833 0.00 0.00 0.00 3.10
280 281 5.334569 CGAATCGACCTATCTCCTTTCTCTC 60.335 48.000 0.00 0.00 0.00 3.20
281 282 4.781775 TCGACCTATCTCCTTTCTCTCT 57.218 45.455 0.00 0.00 0.00 3.10
282 283 4.710324 TCGACCTATCTCCTTTCTCTCTC 58.290 47.826 0.00 0.00 0.00 3.20
283 284 4.164413 TCGACCTATCTCCTTTCTCTCTCA 59.836 45.833 0.00 0.00 0.00 3.27
284 285 4.884744 CGACCTATCTCCTTTCTCTCTCAA 59.115 45.833 0.00 0.00 0.00 3.02
285 286 5.534654 CGACCTATCTCCTTTCTCTCTCAAT 59.465 44.000 0.00 0.00 0.00 2.57
286 287 6.293955 CGACCTATCTCCTTTCTCTCTCAATC 60.294 46.154 0.00 0.00 0.00 2.67
287 288 5.838521 ACCTATCTCCTTTCTCTCTCAATCC 59.161 44.000 0.00 0.00 0.00 3.01
288 289 5.245977 CCTATCTCCTTTCTCTCTCAATCCC 59.754 48.000 0.00 0.00 0.00 3.85
289 290 4.344938 TCTCCTTTCTCTCTCAATCCCT 57.655 45.455 0.00 0.00 0.00 4.20
290 291 5.473849 TCTCCTTTCTCTCTCAATCCCTA 57.526 43.478 0.00 0.00 0.00 3.53
291 292 6.036926 TCTCCTTTCTCTCTCAATCCCTAT 57.963 41.667 0.00 0.00 0.00 2.57
292 293 6.074648 TCTCCTTTCTCTCTCAATCCCTATC 58.925 44.000 0.00 0.00 0.00 2.08
293 294 6.036926 TCCTTTCTCTCTCAATCCCTATCT 57.963 41.667 0.00 0.00 0.00 1.98
294 295 6.074648 TCCTTTCTCTCTCAATCCCTATCTC 58.925 44.000 0.00 0.00 0.00 2.75
295 296 5.245977 CCTTTCTCTCTCAATCCCTATCTCC 59.754 48.000 0.00 0.00 0.00 3.71
296 297 5.409590 TTCTCTCTCAATCCCTATCTCCA 57.590 43.478 0.00 0.00 0.00 3.86
297 298 5.613698 TCTCTCTCAATCCCTATCTCCAT 57.386 43.478 0.00 0.00 0.00 3.41
298 299 5.975113 TCTCTCTCAATCCCTATCTCCATT 58.025 41.667 0.00 0.00 0.00 3.16
299 300 6.015918 TCTCTCTCAATCCCTATCTCCATTC 58.984 44.000 0.00 0.00 0.00 2.67
300 301 5.090139 TCTCTCAATCCCTATCTCCATTCC 58.910 45.833 0.00 0.00 0.00 3.01
301 302 5.092968 CTCTCAATCCCTATCTCCATTCCT 58.907 45.833 0.00 0.00 0.00 3.36
302 303 5.090139 TCTCAATCCCTATCTCCATTCCTC 58.910 45.833 0.00 0.00 0.00 3.71
303 304 4.831314 TCAATCCCTATCTCCATTCCTCA 58.169 43.478 0.00 0.00 0.00 3.86
304 305 4.594920 TCAATCCCTATCTCCATTCCTCAC 59.405 45.833 0.00 0.00 0.00 3.51
305 306 2.598565 TCCCTATCTCCATTCCTCACG 58.401 52.381 0.00 0.00 0.00 4.35
306 307 1.620819 CCCTATCTCCATTCCTCACGG 59.379 57.143 0.00 0.00 0.00 4.94
307 308 2.320781 CCTATCTCCATTCCTCACGGT 58.679 52.381 0.00 0.00 0.00 4.83
308 309 2.036475 CCTATCTCCATTCCTCACGGTG 59.964 54.545 0.56 0.56 0.00 4.94
309 310 1.866015 ATCTCCATTCCTCACGGTGA 58.134 50.000 10.88 10.88 0.00 4.02
310 311 1.186200 TCTCCATTCCTCACGGTGAG 58.814 55.000 27.29 27.29 43.91 3.51
311 312 0.460987 CTCCATTCCTCACGGTGAGC 60.461 60.000 28.50 0.00 42.98 4.26
312 313 0.904865 TCCATTCCTCACGGTGAGCT 60.905 55.000 28.50 14.57 42.98 4.09
313 314 0.460987 CCATTCCTCACGGTGAGCTC 60.461 60.000 28.50 6.82 42.98 4.09
314 315 0.460987 CATTCCTCACGGTGAGCTCC 60.461 60.000 28.50 2.19 42.98 4.70
315 316 0.904865 ATTCCTCACGGTGAGCTCCA 60.905 55.000 28.50 14.02 42.98 3.86
316 317 1.118965 TTCCTCACGGTGAGCTCCAA 61.119 55.000 28.50 16.20 42.98 3.53
317 318 1.374758 CCTCACGGTGAGCTCCAAC 60.375 63.158 28.50 3.13 42.98 3.77
318 319 1.367471 CTCACGGTGAGCTCCAACA 59.633 57.895 23.81 0.00 37.72 3.33
319 320 0.946221 CTCACGGTGAGCTCCAACAC 60.946 60.000 23.81 2.66 37.72 3.32
323 324 3.050275 GTGAGCTCCAACACCCGC 61.050 66.667 12.15 0.00 0.00 6.13
324 325 3.241530 TGAGCTCCAACACCCGCT 61.242 61.111 12.15 0.00 35.03 5.52
325 326 2.435059 GAGCTCCAACACCCGCTC 60.435 66.667 0.87 0.00 41.60 5.03
326 327 4.379243 AGCTCCAACACCCGCTCG 62.379 66.667 0.00 0.00 0.00 5.03
337 338 3.490759 CCGCTCGCGCTGTCAATT 61.491 61.111 5.56 0.00 38.24 2.32
338 339 2.476051 CGCTCGCGCTGTCAATTT 59.524 55.556 5.56 0.00 0.00 1.82
339 340 1.578618 CGCTCGCGCTGTCAATTTC 60.579 57.895 5.56 0.00 0.00 2.17
340 341 1.578618 GCTCGCGCTGTCAATTTCG 60.579 57.895 5.56 0.00 0.00 3.46
341 342 1.955529 GCTCGCGCTGTCAATTTCGA 61.956 55.000 5.56 0.00 0.00 3.71
342 343 0.024238 CTCGCGCTGTCAATTTCGAG 59.976 55.000 5.56 0.00 37.65 4.04
343 344 1.059369 CGCGCTGTCAATTTCGAGG 59.941 57.895 5.56 0.00 0.00 4.63
344 345 1.626654 CGCGCTGTCAATTTCGAGGT 61.627 55.000 5.56 0.00 0.00 3.85
345 346 0.517316 GCGCTGTCAATTTCGAGGTT 59.483 50.000 0.00 0.00 0.00 3.50
346 347 1.725931 GCGCTGTCAATTTCGAGGTTG 60.726 52.381 0.00 5.72 0.00 3.77
347 348 1.798223 CGCTGTCAATTTCGAGGTTGA 59.202 47.619 9.63 9.63 32.31 3.18
350 351 2.227754 GTCAATTTCGAGGTTGACGC 57.772 50.000 21.43 7.56 43.08 5.19
351 352 0.787787 TCAATTTCGAGGTTGACGCG 59.212 50.000 3.53 3.53 44.16 6.01
352 353 0.179225 CAATTTCGAGGTTGACGCGG 60.179 55.000 12.47 0.00 42.95 6.46
353 354 1.908066 AATTTCGAGGTTGACGCGGC 61.908 55.000 12.47 8.67 42.95 6.53
354 355 2.781595 ATTTCGAGGTTGACGCGGCT 62.782 55.000 15.80 0.00 42.95 5.52
355 356 4.717629 TCGAGGTTGACGCGGCTG 62.718 66.667 15.80 0.00 42.95 4.85
384 385 4.760047 CCGGCGGTGTTGAGGAGG 62.760 72.222 19.97 0.00 0.00 4.30
386 387 4.329545 GGCGGTGTTGAGGAGGCA 62.330 66.667 0.00 0.00 0.00 4.75
387 388 2.743928 GCGGTGTTGAGGAGGCAG 60.744 66.667 0.00 0.00 0.00 4.85
388 389 3.059982 CGGTGTTGAGGAGGCAGA 58.940 61.111 0.00 0.00 0.00 4.26
389 390 1.374758 CGGTGTTGAGGAGGCAGAC 60.375 63.158 0.00 0.00 0.00 3.51
390 391 1.374758 GGTGTTGAGGAGGCAGACG 60.375 63.158 0.00 0.00 0.00 4.18
391 392 1.374758 GTGTTGAGGAGGCAGACGG 60.375 63.158 0.00 0.00 0.00 4.79
392 393 2.435059 GTTGAGGAGGCAGACGGC 60.435 66.667 0.00 0.00 43.74 5.68
402 403 3.826754 CAGACGGCAGCGGCTCTA 61.827 66.667 9.17 0.00 40.87 2.43
403 404 3.827898 AGACGGCAGCGGCTCTAC 61.828 66.667 9.17 0.00 40.87 2.59
404 405 3.827898 GACGGCAGCGGCTCTACT 61.828 66.667 9.17 0.00 40.87 2.57
405 406 3.358076 GACGGCAGCGGCTCTACTT 62.358 63.158 9.17 0.00 40.87 2.24
406 407 2.125512 CGGCAGCGGCTCTACTTT 60.126 61.111 9.17 0.00 40.87 2.66
407 408 2.167861 CGGCAGCGGCTCTACTTTC 61.168 63.158 9.17 0.00 40.87 2.62
408 409 1.219393 GGCAGCGGCTCTACTTTCT 59.781 57.895 9.17 0.00 40.87 2.52
409 410 0.808060 GGCAGCGGCTCTACTTTCTC 60.808 60.000 9.17 0.00 40.87 2.87
410 411 0.174617 GCAGCGGCTCTACTTTCTCT 59.825 55.000 0.00 0.00 36.96 3.10
411 412 1.801025 GCAGCGGCTCTACTTTCTCTC 60.801 57.143 0.00 0.00 36.96 3.20
412 413 1.474478 CAGCGGCTCTACTTTCTCTCA 59.526 52.381 0.00 0.00 0.00 3.27
413 414 2.100584 CAGCGGCTCTACTTTCTCTCAT 59.899 50.000 0.00 0.00 0.00 2.90
414 415 3.316588 CAGCGGCTCTACTTTCTCTCATA 59.683 47.826 0.00 0.00 0.00 2.15
415 416 3.954904 AGCGGCTCTACTTTCTCTCATAA 59.045 43.478 0.00 0.00 0.00 1.90
416 417 4.586841 AGCGGCTCTACTTTCTCTCATAAT 59.413 41.667 0.00 0.00 0.00 1.28
417 418 4.920927 GCGGCTCTACTTTCTCTCATAATC 59.079 45.833 0.00 0.00 0.00 1.75
418 419 5.465935 CGGCTCTACTTTCTCTCATAATCC 58.534 45.833 0.00 0.00 0.00 3.01
419 420 5.010112 CGGCTCTACTTTCTCTCATAATCCA 59.990 44.000 0.00 0.00 0.00 3.41
420 421 6.295011 CGGCTCTACTTTCTCTCATAATCCAT 60.295 42.308 0.00 0.00 0.00 3.41
421 422 7.094162 CGGCTCTACTTTCTCTCATAATCCATA 60.094 40.741 0.00 0.00 0.00 2.74
422 423 8.757877 GGCTCTACTTTCTCTCATAATCCATAT 58.242 37.037 0.00 0.00 0.00 1.78
428 429 9.956640 ACTTTCTCTCATAATCCATATTCCATC 57.043 33.333 0.00 0.00 0.00 3.51
429 430 9.393512 CTTTCTCTCATAATCCATATTCCATCC 57.606 37.037 0.00 0.00 0.00 3.51
430 431 8.691194 TTCTCTCATAATCCATATTCCATCCT 57.309 34.615 0.00 0.00 0.00 3.24
431 432 8.691194 TCTCTCATAATCCATATTCCATCCTT 57.309 34.615 0.00 0.00 0.00 3.36
432 433 8.546322 TCTCTCATAATCCATATTCCATCCTTG 58.454 37.037 0.00 0.00 0.00 3.61
433 434 8.453498 TCTCATAATCCATATTCCATCCTTGA 57.547 34.615 0.00 0.00 0.00 3.02
434 435 8.324306 TCTCATAATCCATATTCCATCCTTGAC 58.676 37.037 0.00 0.00 0.00 3.18
435 436 7.105588 TCATAATCCATATTCCATCCTTGACG 58.894 38.462 0.00 0.00 0.00 4.35
436 437 3.769739 TCCATATTCCATCCTTGACGG 57.230 47.619 0.00 0.00 0.00 4.79
437 438 3.045634 TCCATATTCCATCCTTGACGGT 58.954 45.455 0.00 0.00 0.00 4.83
438 439 3.141398 CCATATTCCATCCTTGACGGTG 58.859 50.000 0.00 0.00 0.00 4.94
439 440 3.433598 CCATATTCCATCCTTGACGGTGT 60.434 47.826 0.00 0.00 0.00 4.16
440 441 4.202315 CCATATTCCATCCTTGACGGTGTA 60.202 45.833 0.00 0.00 0.00 2.90
441 442 3.992943 ATTCCATCCTTGACGGTGTAA 57.007 42.857 0.00 0.00 0.00 2.41
442 443 2.754946 TCCATCCTTGACGGTGTAAC 57.245 50.000 0.00 0.00 0.00 2.50
461 462 8.546597 GTGTAACCATGGCAAATTTATTCTTT 57.453 30.769 13.04 0.00 0.00 2.52
462 463 9.646427 GTGTAACCATGGCAAATTTATTCTTTA 57.354 29.630 13.04 0.00 0.00 1.85
463 464 9.646427 TGTAACCATGGCAAATTTATTCTTTAC 57.354 29.630 13.04 8.68 0.00 2.01
464 465 9.646427 GTAACCATGGCAAATTTATTCTTTACA 57.354 29.630 13.04 0.00 0.00 2.41
466 467 8.947055 ACCATGGCAAATTTATTCTTTACATC 57.053 30.769 13.04 0.00 0.00 3.06
467 468 8.538701 ACCATGGCAAATTTATTCTTTACATCA 58.461 29.630 13.04 0.00 0.00 3.07
468 469 9.550406 CCATGGCAAATTTATTCTTTACATCAT 57.450 29.630 0.00 0.00 0.00 2.45
471 472 9.748708 TGGCAAATTTATTCTTTACATCATAGC 57.251 29.630 0.00 0.00 0.00 2.97
472 473 9.748708 GGCAAATTTATTCTTTACATCATAGCA 57.251 29.630 0.00 0.00 0.00 3.49
497 498 2.147436 TTTTCATGGAACGGCTTTGC 57.853 45.000 0.00 0.00 0.00 3.68
498 499 0.316841 TTTCATGGAACGGCTTTGCC 59.683 50.000 0.00 0.00 46.75 4.52
508 509 2.644887 GGCTTTGCCTCACATGTCA 58.355 52.632 0.00 0.00 46.69 3.58
509 510 0.961019 GGCTTTGCCTCACATGTCAA 59.039 50.000 0.00 0.00 46.69 3.18
510 511 1.340889 GGCTTTGCCTCACATGTCAAA 59.659 47.619 9.35 9.35 46.69 2.69
511 512 2.608752 GGCTTTGCCTCACATGTCAAAG 60.609 50.000 23.53 23.53 46.69 2.77
512 513 2.035066 GCTTTGCCTCACATGTCAAAGT 59.965 45.455 26.10 0.00 44.17 2.66
513 514 3.635331 CTTTGCCTCACATGTCAAAGTG 58.365 45.455 21.20 6.25 40.03 3.16
514 515 0.953727 TGCCTCACATGTCAAAGTGC 59.046 50.000 0.00 1.34 35.76 4.40
515 516 0.953727 GCCTCACATGTCAAAGTGCA 59.046 50.000 0.00 0.00 35.76 4.57
516 517 1.542915 GCCTCACATGTCAAAGTGCAT 59.457 47.619 0.00 0.00 35.76 3.96
517 518 2.749076 GCCTCACATGTCAAAGTGCATA 59.251 45.455 0.00 0.00 35.76 3.14
518 519 3.379372 GCCTCACATGTCAAAGTGCATAT 59.621 43.478 0.00 0.00 35.76 1.78
519 520 4.576053 GCCTCACATGTCAAAGTGCATATA 59.424 41.667 0.00 0.00 35.76 0.86
520 521 5.240183 GCCTCACATGTCAAAGTGCATATAT 59.760 40.000 0.00 0.00 35.76 0.86
521 522 6.567321 GCCTCACATGTCAAAGTGCATATATC 60.567 42.308 0.00 0.00 35.76 1.63
522 523 6.709397 CCTCACATGTCAAAGTGCATATATCT 59.291 38.462 0.00 0.00 35.76 1.98
523 524 7.228108 CCTCACATGTCAAAGTGCATATATCTT 59.772 37.037 0.00 0.00 35.76 2.40
524 525 8.146479 TCACATGTCAAAGTGCATATATCTTC 57.854 34.615 0.00 0.00 35.76 2.87
525 526 7.989170 TCACATGTCAAAGTGCATATATCTTCT 59.011 33.333 0.00 0.00 35.76 2.85
526 527 8.618677 CACATGTCAAAGTGCATATATCTTCTT 58.381 33.333 0.00 0.00 0.00 2.52
527 528 9.182214 ACATGTCAAAGTGCATATATCTTCTTT 57.818 29.630 0.00 0.00 0.00 2.52
530 531 9.453572 TGTCAAAGTGCATATATCTTCTTTTCT 57.546 29.630 0.00 0.00 0.00 2.52
533 534 9.512435 CAAAGTGCATATATCTTCTTTTCTTGG 57.488 33.333 0.00 0.00 0.00 3.61
534 535 8.814038 AAGTGCATATATCTTCTTTTCTTGGT 57.186 30.769 0.00 0.00 0.00 3.67
535 536 8.218338 AGTGCATATATCTTCTTTTCTTGGTG 57.782 34.615 0.00 0.00 0.00 4.17
536 537 7.284034 AGTGCATATATCTTCTTTTCTTGGTGG 59.716 37.037 0.00 0.00 0.00 4.61
537 538 6.547141 TGCATATATCTTCTTTTCTTGGTGGG 59.453 38.462 0.00 0.00 0.00 4.61
538 539 6.547510 GCATATATCTTCTTTTCTTGGTGGGT 59.452 38.462 0.00 0.00 0.00 4.51
539 540 7.469181 GCATATATCTTCTTTTCTTGGTGGGTG 60.469 40.741 0.00 0.00 0.00 4.61
540 541 2.944129 TCTTCTTTTCTTGGTGGGTGG 58.056 47.619 0.00 0.00 0.00 4.61
541 542 1.963515 CTTCTTTTCTTGGTGGGTGGG 59.036 52.381 0.00 0.00 0.00 4.61
542 543 0.930726 TCTTTTCTTGGTGGGTGGGT 59.069 50.000 0.00 0.00 0.00 4.51
543 544 1.039856 CTTTTCTTGGTGGGTGGGTG 58.960 55.000 0.00 0.00 0.00 4.61
544 545 0.336737 TTTTCTTGGTGGGTGGGTGT 59.663 50.000 0.00 0.00 0.00 4.16
545 546 0.396417 TTTCTTGGTGGGTGGGTGTG 60.396 55.000 0.00 0.00 0.00 3.82
546 547 1.576368 TTCTTGGTGGGTGGGTGTGT 61.576 55.000 0.00 0.00 0.00 3.72
547 548 1.827789 CTTGGTGGGTGGGTGTGTG 60.828 63.158 0.00 0.00 0.00 3.82
548 549 2.566111 CTTGGTGGGTGGGTGTGTGT 62.566 60.000 0.00 0.00 0.00 3.72
549 550 2.518349 GGTGGGTGGGTGTGTGTG 60.518 66.667 0.00 0.00 0.00 3.82
550 551 3.216292 GTGGGTGGGTGTGTGTGC 61.216 66.667 0.00 0.00 0.00 4.57
551 552 3.732849 TGGGTGGGTGTGTGTGCA 61.733 61.111 0.00 0.00 0.00 4.57
552 553 2.441164 GGGTGGGTGTGTGTGCAA 60.441 61.111 0.00 0.00 0.00 4.08
553 554 2.781158 GGGTGGGTGTGTGTGCAAC 61.781 63.158 0.00 0.00 37.35 4.17
554 555 1.752694 GGTGGGTGTGTGTGCAACT 60.753 57.895 0.00 0.00 38.04 3.16
555 556 1.319614 GGTGGGTGTGTGTGCAACTT 61.320 55.000 0.00 0.00 38.04 2.66
556 557 0.530288 GTGGGTGTGTGTGCAACTTT 59.470 50.000 0.00 0.00 38.04 2.66
557 558 1.746220 GTGGGTGTGTGTGCAACTTTA 59.254 47.619 0.00 0.00 38.04 1.85
558 559 2.360801 GTGGGTGTGTGTGCAACTTTAT 59.639 45.455 0.00 0.00 38.04 1.40
559 560 3.027412 TGGGTGTGTGTGCAACTTTATT 58.973 40.909 0.00 0.00 38.04 1.40
560 561 4.036971 GTGGGTGTGTGTGCAACTTTATTA 59.963 41.667 0.00 0.00 38.04 0.98
561 562 4.830046 TGGGTGTGTGTGCAACTTTATTAT 59.170 37.500 0.00 0.00 38.04 1.28
562 563 6.004574 TGGGTGTGTGTGCAACTTTATTATA 58.995 36.000 0.00 0.00 38.04 0.98
563 564 6.150307 TGGGTGTGTGTGCAACTTTATTATAG 59.850 38.462 0.00 0.00 38.04 1.31
564 565 6.404293 GGGTGTGTGTGCAACTTTATTATAGG 60.404 42.308 0.00 0.00 38.04 2.57
565 566 6.404293 GGTGTGTGTGCAACTTTATTATAGGG 60.404 42.308 0.00 0.00 38.04 3.53
566 567 6.150474 GTGTGTGTGCAACTTTATTATAGGGT 59.850 38.462 0.00 0.00 38.04 4.34
567 568 6.150307 TGTGTGTGCAACTTTATTATAGGGTG 59.850 38.462 0.00 0.00 38.04 4.61
568 569 5.124776 TGTGTGCAACTTTATTATAGGGTGC 59.875 40.000 9.26 9.26 38.04 5.01
569 570 5.124776 GTGTGCAACTTTATTATAGGGTGCA 59.875 40.000 13.07 13.07 38.04 4.57
570 571 5.890985 TGTGCAACTTTATTATAGGGTGCAT 59.109 36.000 17.59 0.00 38.87 3.96
571 572 6.183360 TGTGCAACTTTATTATAGGGTGCATG 60.183 38.462 17.59 0.00 38.87 4.06
572 573 5.301551 TGCAACTTTATTATAGGGTGCATGG 59.698 40.000 13.07 0.00 34.72 3.66
573 574 5.772521 CAACTTTATTATAGGGTGCATGGC 58.227 41.667 0.00 0.00 0.00 4.40
574 575 5.060427 ACTTTATTATAGGGTGCATGGCA 57.940 39.130 0.00 0.00 35.60 4.92
575 576 5.644188 ACTTTATTATAGGGTGCATGGCAT 58.356 37.500 0.00 0.00 41.91 4.40
576 577 6.077322 ACTTTATTATAGGGTGCATGGCATT 58.923 36.000 0.00 0.00 41.91 3.56
577 578 6.554605 ACTTTATTATAGGGTGCATGGCATTT 59.445 34.615 0.00 0.00 41.91 2.32
578 579 6.992664 TTATTATAGGGTGCATGGCATTTT 57.007 33.333 0.00 0.00 41.91 1.82
579 580 8.484214 TTTATTATAGGGTGCATGGCATTTTA 57.516 30.769 0.00 0.00 41.91 1.52
580 581 6.594788 ATTATAGGGTGCATGGCATTTTAG 57.405 37.500 0.00 0.00 41.91 1.85
581 582 2.236489 AGGGTGCATGGCATTTTAGT 57.764 45.000 0.00 0.00 41.91 2.24
582 583 1.826720 AGGGTGCATGGCATTTTAGTG 59.173 47.619 0.00 0.00 41.91 2.74
583 584 1.134729 GGGTGCATGGCATTTTAGTGG 60.135 52.381 0.00 0.00 41.91 4.00
584 585 1.550072 GGTGCATGGCATTTTAGTGGT 59.450 47.619 0.00 0.00 41.91 4.16
585 586 2.417243 GGTGCATGGCATTTTAGTGGTC 60.417 50.000 0.00 0.00 41.91 4.02
586 587 2.230992 GTGCATGGCATTTTAGTGGTCA 59.769 45.455 0.00 0.00 41.91 4.02
587 588 2.896044 TGCATGGCATTTTAGTGGTCAA 59.104 40.909 0.00 0.00 31.71 3.18
588 589 3.323115 TGCATGGCATTTTAGTGGTCAAA 59.677 39.130 0.00 0.00 31.71 2.69
589 590 3.679502 GCATGGCATTTTAGTGGTCAAAC 59.320 43.478 0.00 0.00 0.00 2.93
590 591 3.634568 TGGCATTTTAGTGGTCAAACG 57.365 42.857 0.00 0.00 0.00 3.60
591 592 3.215151 TGGCATTTTAGTGGTCAAACGA 58.785 40.909 0.00 0.00 0.00 3.85
592 593 3.003897 TGGCATTTTAGTGGTCAAACGAC 59.996 43.478 0.00 0.00 0.00 4.34
593 594 3.003897 GGCATTTTAGTGGTCAAACGACA 59.996 43.478 0.00 0.00 34.92 4.35
594 595 4.498345 GGCATTTTAGTGGTCAAACGACAA 60.498 41.667 0.00 0.00 34.92 3.18
595 596 5.038033 GCATTTTAGTGGTCAAACGACAAA 58.962 37.500 0.00 0.00 34.92 2.83
596 597 5.689961 GCATTTTAGTGGTCAAACGACAAAT 59.310 36.000 0.00 0.00 34.92 2.32
597 598 6.200097 GCATTTTAGTGGTCAAACGACAAATT 59.800 34.615 0.00 0.00 34.92 1.82
598 599 7.254286 GCATTTTAGTGGTCAAACGACAAATTT 60.254 33.333 0.00 0.00 34.92 1.82
599 600 7.513190 TTTTAGTGGTCAAACGACAAATTTG 57.487 32.000 16.67 16.67 38.21 2.32
600 601 3.443976 AGTGGTCAAACGACAAATTTGC 58.556 40.909 18.12 9.87 37.05 3.68
601 602 3.119316 AGTGGTCAAACGACAAATTTGCA 60.119 39.130 18.12 1.92 37.05 4.08
602 603 3.801594 GTGGTCAAACGACAAATTTGCAT 59.198 39.130 18.12 0.00 37.05 3.96
603 604 3.801050 TGGTCAAACGACAAATTTGCATG 59.199 39.130 18.12 10.26 37.05 4.06
604 605 4.047822 GGTCAAACGACAAATTTGCATGA 58.952 39.130 18.12 11.78 37.05 3.07
605 606 4.505922 GGTCAAACGACAAATTTGCATGAA 59.494 37.500 18.12 0.00 37.05 2.57
606 607 5.177327 GGTCAAACGACAAATTTGCATGAAT 59.823 36.000 18.12 0.00 37.05 2.57
607 608 6.066410 GTCAAACGACAAATTTGCATGAATG 58.934 36.000 18.12 10.33 37.05 2.67
608 609 5.752472 TCAAACGACAAATTTGCATGAATGT 59.248 32.000 18.12 3.81 37.05 2.71
609 610 6.257411 TCAAACGACAAATTTGCATGAATGTT 59.743 30.769 18.12 9.13 37.05 2.71
610 611 6.601741 AACGACAAATTTGCATGAATGTTT 57.398 29.167 18.12 0.00 0.00 2.83
611 612 6.601741 ACGACAAATTTGCATGAATGTTTT 57.398 29.167 18.12 0.00 0.00 2.43
612 613 7.706281 ACGACAAATTTGCATGAATGTTTTA 57.294 28.000 18.12 0.00 0.00 1.52
613 614 8.136057 ACGACAAATTTGCATGAATGTTTTAA 57.864 26.923 18.12 0.00 0.00 1.52
614 615 8.772705 ACGACAAATTTGCATGAATGTTTTAAT 58.227 25.926 18.12 0.00 0.00 1.40
615 616 9.596677 CGACAAATTTGCATGAATGTTTTAATT 57.403 25.926 18.12 0.00 0.00 1.40
620 621 9.896263 AATTTGCATGAATGTTTTAATTGTTCC 57.104 25.926 0.00 0.00 0.00 3.62
621 622 7.432350 TTGCATGAATGTTTTAATTGTTCCC 57.568 32.000 0.00 0.00 0.00 3.97
622 623 6.528321 TGCATGAATGTTTTAATTGTTCCCA 58.472 32.000 0.00 0.00 0.00 4.37
623 624 7.166851 TGCATGAATGTTTTAATTGTTCCCAT 58.833 30.769 0.00 0.00 0.00 4.00
624 625 7.119407 TGCATGAATGTTTTAATTGTTCCCATG 59.881 33.333 0.00 0.00 0.00 3.66
625 626 7.414319 GCATGAATGTTTTAATTGTTCCCATGG 60.414 37.037 4.14 4.14 0.00 3.66
626 627 5.936956 TGAATGTTTTAATTGTTCCCATGGC 59.063 36.000 6.09 0.00 0.00 4.40
627 628 4.963318 TGTTTTAATTGTTCCCATGGCA 57.037 36.364 6.09 0.00 0.00 4.92
628 629 5.296151 TGTTTTAATTGTTCCCATGGCAA 57.704 34.783 6.09 5.94 0.00 4.52
629 630 5.874093 TGTTTTAATTGTTCCCATGGCAAT 58.126 33.333 6.09 8.25 34.69 3.56
630 631 6.302269 TGTTTTAATTGTTCCCATGGCAATT 58.698 32.000 23.71 23.71 42.92 2.32
631 632 6.774656 TGTTTTAATTGTTCCCATGGCAATTT 59.225 30.769 24.76 14.16 41.35 1.82
632 633 7.286316 TGTTTTAATTGTTCCCATGGCAATTTT 59.714 29.630 24.76 11.96 41.35 1.82
633 634 7.446001 TTTAATTGTTCCCATGGCAATTTTC 57.554 32.000 24.76 1.24 41.35 2.29
634 635 4.914177 ATTGTTCCCATGGCAATTTTCT 57.086 36.364 6.09 0.00 29.59 2.52
635 636 4.703379 TTGTTCCCATGGCAATTTTCTT 57.297 36.364 6.09 0.00 0.00 2.52
636 637 4.270245 TGTTCCCATGGCAATTTTCTTC 57.730 40.909 6.09 0.00 0.00 2.87
637 638 3.903090 TGTTCCCATGGCAATTTTCTTCT 59.097 39.130 6.09 0.00 0.00 2.85
638 639 4.021192 TGTTCCCATGGCAATTTTCTTCTC 60.021 41.667 6.09 0.00 0.00 2.87
639 640 3.777087 TCCCATGGCAATTTTCTTCTCA 58.223 40.909 6.09 0.00 0.00 3.27
640 641 4.355549 TCCCATGGCAATTTTCTTCTCAT 58.644 39.130 6.09 0.00 0.00 2.90
641 642 4.160814 TCCCATGGCAATTTTCTTCTCATG 59.839 41.667 6.09 0.00 0.00 3.07
642 643 4.439057 CCATGGCAATTTTCTTCTCATGG 58.561 43.478 0.00 0.00 42.43 3.66
814 816 4.683721 TGGGCCGCGAAAACGCTA 62.684 61.111 8.23 0.00 0.00 4.26
1108 1121 3.728385 AGCTAGGGTTCTTTGAGCAAT 57.272 42.857 0.00 0.00 35.55 3.56
1869 1990 3.387962 AGATGAGGAGTGGCCAGAATAA 58.612 45.455 5.11 0.00 40.02 1.40
1923 2044 4.461081 TGTACTTGTTGTTTTGCAGGAAGT 59.539 37.500 0.00 0.00 35.69 3.01
2018 2139 3.700538 TGGCTTTTGTATGAGGATTGCT 58.299 40.909 0.00 0.00 0.00 3.91
2438 2564 5.189180 AGTGACAAGAACAAGAGAAAGCTT 58.811 37.500 0.00 0.00 0.00 3.74
2547 2673 4.994852 GGCTTGTAATGTGTGAACTAGTGA 59.005 41.667 0.00 0.00 0.00 3.41
3008 7568 6.069963 GGCACCCTAGATGATCATATTAGGTT 60.070 42.308 27.78 19.50 31.41 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.740397 CACACGGCATGCCCACTG 61.740 66.667 30.79 23.48 0.00 3.66
26 27 0.376502 GAGCTTCTGAATGGCTTCGC 59.623 55.000 5.73 0.00 36.37 4.70
27 28 1.396301 GTGAGCTTCTGAATGGCTTCG 59.604 52.381 5.73 0.00 36.37 3.79
28 29 1.396301 CGTGAGCTTCTGAATGGCTTC 59.604 52.381 5.73 2.99 36.37 3.86
29 30 1.446907 CGTGAGCTTCTGAATGGCTT 58.553 50.000 5.73 0.00 36.37 4.35
30 31 0.392193 CCGTGAGCTTCTGAATGGCT 60.392 55.000 4.06 4.06 39.16 4.75
31 32 1.986575 GCCGTGAGCTTCTGAATGGC 61.987 60.000 0.00 0.00 38.99 4.40
32 33 1.372087 GGCCGTGAGCTTCTGAATGG 61.372 60.000 0.00 0.00 43.05 3.16
33 34 0.674581 TGGCCGTGAGCTTCTGAATG 60.675 55.000 0.00 0.00 43.05 2.67
34 35 0.674895 GTGGCCGTGAGCTTCTGAAT 60.675 55.000 0.00 0.00 43.05 2.57
35 36 1.301716 GTGGCCGTGAGCTTCTGAA 60.302 57.895 0.00 0.00 43.05 3.02
36 37 2.343758 GTGGCCGTGAGCTTCTGA 59.656 61.111 0.00 0.00 43.05 3.27
37 38 2.743928 GGTGGCCGTGAGCTTCTG 60.744 66.667 0.00 0.00 43.05 3.02
38 39 2.925170 AGGTGGCCGTGAGCTTCT 60.925 61.111 0.00 0.00 43.05 2.85
39 40 2.743928 CAGGTGGCCGTGAGCTTC 60.744 66.667 0.00 0.00 43.05 3.86
40 41 3.560251 ACAGGTGGCCGTGAGCTT 61.560 61.111 6.57 0.00 43.05 3.74
41 42 4.320456 CACAGGTGGCCGTGAGCT 62.320 66.667 6.57 0.00 43.05 4.09
67 68 0.389948 AAGAGTTGACGGACGATGCC 60.390 55.000 0.00 0.00 0.00 4.40
68 69 1.429463 AAAGAGTTGACGGACGATGC 58.571 50.000 0.00 0.00 0.00 3.91
97 98 9.204570 GCAGTCAGTTAATACTTCTAGAAAACA 57.795 33.333 15.78 2.32 30.26 2.83
98 99 9.425577 AGCAGTCAGTTAATACTTCTAGAAAAC 57.574 33.333 6.63 7.65 30.26 2.43
99 100 9.424319 CAGCAGTCAGTTAATACTTCTAGAAAA 57.576 33.333 6.63 0.00 30.26 2.29
100 101 8.585881 ACAGCAGTCAGTTAATACTTCTAGAAA 58.414 33.333 6.63 0.00 30.26 2.52
101 102 8.123639 ACAGCAGTCAGTTAATACTTCTAGAA 57.876 34.615 4.81 4.81 30.26 2.10
102 103 7.704578 ACAGCAGTCAGTTAATACTTCTAGA 57.295 36.000 0.00 0.00 30.26 2.43
103 104 7.979115 GACAGCAGTCAGTTAATACTTCTAG 57.021 40.000 4.10 0.00 44.34 2.43
118 119 3.817647 AGGACAAAAATCTGACAGCAGTC 59.182 43.478 1.64 1.64 45.19 3.51
119 120 3.825328 AGGACAAAAATCTGACAGCAGT 58.175 40.909 0.00 0.00 42.84 4.40
120 121 4.320788 GGAAGGACAAAAATCTGACAGCAG 60.321 45.833 0.00 0.00 43.67 4.24
121 122 3.569701 GGAAGGACAAAAATCTGACAGCA 59.430 43.478 0.00 0.00 0.00 4.41
122 123 3.569701 TGGAAGGACAAAAATCTGACAGC 59.430 43.478 0.00 0.00 0.00 4.40
123 124 4.320788 GCTGGAAGGACAAAAATCTGACAG 60.321 45.833 0.00 0.00 0.00 3.51
124 125 3.569701 GCTGGAAGGACAAAAATCTGACA 59.430 43.478 0.00 0.00 0.00 3.58
125 126 3.365364 CGCTGGAAGGACAAAAATCTGAC 60.365 47.826 0.00 0.00 0.00 3.51
126 127 2.813754 CGCTGGAAGGACAAAAATCTGA 59.186 45.455 0.00 0.00 0.00 3.27
127 128 2.813754 TCGCTGGAAGGACAAAAATCTG 59.186 45.455 0.00 0.00 0.00 2.90
128 129 3.140325 TCGCTGGAAGGACAAAAATCT 57.860 42.857 0.00 0.00 0.00 2.40
129 130 3.004315 TGTTCGCTGGAAGGACAAAAATC 59.996 43.478 0.00 0.00 31.49 2.17
130 131 2.955660 TGTTCGCTGGAAGGACAAAAAT 59.044 40.909 0.00 0.00 31.49 1.82
131 132 2.098443 GTGTTCGCTGGAAGGACAAAAA 59.902 45.455 0.00 0.00 31.49 1.94
132 133 1.673920 GTGTTCGCTGGAAGGACAAAA 59.326 47.619 0.00 0.00 31.49 2.44
133 134 1.305201 GTGTTCGCTGGAAGGACAAA 58.695 50.000 0.00 0.00 31.49 2.83
134 135 0.878523 CGTGTTCGCTGGAAGGACAA 60.879 55.000 0.00 0.00 31.49 3.18
135 136 1.300620 CGTGTTCGCTGGAAGGACA 60.301 57.895 0.00 0.00 31.49 4.02
136 137 1.282930 GACGTGTTCGCTGGAAGGAC 61.283 60.000 0.00 0.00 41.18 3.85
137 138 1.006571 GACGTGTTCGCTGGAAGGA 60.007 57.895 0.00 0.00 41.18 3.36
138 139 1.284982 CTGACGTGTTCGCTGGAAGG 61.285 60.000 0.00 0.00 41.18 3.46
139 140 0.597637 ACTGACGTGTTCGCTGGAAG 60.598 55.000 0.00 0.00 41.18 3.46
140 141 0.179094 AACTGACGTGTTCGCTGGAA 60.179 50.000 0.00 0.00 41.18 3.53
141 142 0.669619 TAACTGACGTGTTCGCTGGA 59.330 50.000 0.00 0.00 41.18 3.86
142 143 1.654105 GATAACTGACGTGTTCGCTGG 59.346 52.381 0.00 0.00 41.18 4.85
143 144 1.317611 CGATAACTGACGTGTTCGCTG 59.682 52.381 0.00 0.00 41.18 5.18
144 145 1.068748 ACGATAACTGACGTGTTCGCT 60.069 47.619 0.00 0.00 41.17 4.93
145 146 1.334054 ACGATAACTGACGTGTTCGC 58.666 50.000 0.00 0.00 41.17 4.70
146 147 2.090041 CCAACGATAACTGACGTGTTCG 59.910 50.000 0.00 0.00 42.43 3.95
147 148 3.311106 TCCAACGATAACTGACGTGTTC 58.689 45.455 0.00 0.00 42.43 3.18
148 149 3.374220 TCCAACGATAACTGACGTGTT 57.626 42.857 0.00 0.00 42.43 3.32
149 150 3.057104 TCATCCAACGATAACTGACGTGT 60.057 43.478 0.00 0.00 42.43 4.49
150 151 3.507786 TCATCCAACGATAACTGACGTG 58.492 45.455 0.00 0.00 42.43 4.49
151 152 3.442625 TCTCATCCAACGATAACTGACGT 59.557 43.478 0.00 0.00 44.57 4.34
152 153 4.028852 TCTCATCCAACGATAACTGACG 57.971 45.455 0.00 0.00 0.00 4.35
153 154 6.042777 TCAATCTCATCCAACGATAACTGAC 58.957 40.000 0.00 0.00 0.00 3.51
154 155 6.096846 TCTCAATCTCATCCAACGATAACTGA 59.903 38.462 0.00 0.00 0.00 3.41
155 156 6.199908 GTCTCAATCTCATCCAACGATAACTG 59.800 42.308 0.00 0.00 0.00 3.16
156 157 6.127338 TGTCTCAATCTCATCCAACGATAACT 60.127 38.462 0.00 0.00 0.00 2.24
157 158 6.019479 GTGTCTCAATCTCATCCAACGATAAC 60.019 42.308 0.00 0.00 0.00 1.89
158 159 6.042777 GTGTCTCAATCTCATCCAACGATAA 58.957 40.000 0.00 0.00 0.00 1.75
159 160 5.127031 TGTGTCTCAATCTCATCCAACGATA 59.873 40.000 0.00 0.00 0.00 2.92
160 161 4.081476 TGTGTCTCAATCTCATCCAACGAT 60.081 41.667 0.00 0.00 0.00 3.73
161 162 3.258123 TGTGTCTCAATCTCATCCAACGA 59.742 43.478 0.00 0.00 0.00 3.85
162 163 3.369147 GTGTGTCTCAATCTCATCCAACG 59.631 47.826 0.00 0.00 0.00 4.10
163 164 3.369147 CGTGTGTCTCAATCTCATCCAAC 59.631 47.826 0.00 0.00 0.00 3.77
164 165 3.258123 TCGTGTGTCTCAATCTCATCCAA 59.742 43.478 0.00 0.00 0.00 3.53
165 166 2.825532 TCGTGTGTCTCAATCTCATCCA 59.174 45.455 0.00 0.00 0.00 3.41
166 167 3.510388 TCGTGTGTCTCAATCTCATCC 57.490 47.619 0.00 0.00 0.00 3.51
167 168 5.347342 AGATTCGTGTGTCTCAATCTCATC 58.653 41.667 0.00 0.00 0.00 2.92
168 169 5.336150 AGATTCGTGTGTCTCAATCTCAT 57.664 39.130 0.00 0.00 0.00 2.90
169 170 4.790765 AGATTCGTGTGTCTCAATCTCA 57.209 40.909 0.00 0.00 0.00 3.27
170 171 5.164233 TCAAGATTCGTGTGTCTCAATCTC 58.836 41.667 0.00 0.00 0.00 2.75
171 172 5.139435 TCAAGATTCGTGTGTCTCAATCT 57.861 39.130 0.00 0.00 0.00 2.40
172 173 5.349817 ACATCAAGATTCGTGTGTCTCAATC 59.650 40.000 0.00 0.00 0.00 2.67
173 174 5.240891 ACATCAAGATTCGTGTGTCTCAAT 58.759 37.500 0.00 0.00 0.00 2.57
174 175 4.631131 ACATCAAGATTCGTGTGTCTCAA 58.369 39.130 0.00 0.00 0.00 3.02
175 176 4.257267 ACATCAAGATTCGTGTGTCTCA 57.743 40.909 0.00 0.00 0.00 3.27
176 177 5.289675 CCTTACATCAAGATTCGTGTGTCTC 59.710 44.000 9.63 0.00 36.22 3.36
177 178 5.047306 TCCTTACATCAAGATTCGTGTGTCT 60.047 40.000 9.63 0.00 36.22 3.41
178 179 5.168569 TCCTTACATCAAGATTCGTGTGTC 58.831 41.667 9.63 0.00 36.22 3.67
179 180 5.147330 TCCTTACATCAAGATTCGTGTGT 57.853 39.130 10.61 10.61 36.22 3.72
180 181 4.033358 GCTCCTTACATCAAGATTCGTGTG 59.967 45.833 0.00 1.26 36.22 3.82
181 182 4.184629 GCTCCTTACATCAAGATTCGTGT 58.815 43.478 0.00 0.00 36.22 4.49
182 183 4.183865 TGCTCCTTACATCAAGATTCGTG 58.816 43.478 0.00 0.00 36.22 4.35
183 184 4.471904 TGCTCCTTACATCAAGATTCGT 57.528 40.909 0.00 0.00 36.22 3.85
184 185 5.745514 CAATGCTCCTTACATCAAGATTCG 58.254 41.667 0.00 0.00 36.22 3.34
185 186 5.506982 GGCAATGCTCCTTACATCAAGATTC 60.507 44.000 4.82 0.00 36.22 2.52
186 187 4.340381 GGCAATGCTCCTTACATCAAGATT 59.660 41.667 4.82 0.00 36.22 2.40
187 188 3.887716 GGCAATGCTCCTTACATCAAGAT 59.112 43.478 4.82 0.00 36.22 2.40
188 189 3.282021 GGCAATGCTCCTTACATCAAGA 58.718 45.455 4.82 0.00 36.22 3.02
189 190 3.018856 TGGCAATGCTCCTTACATCAAG 58.981 45.455 4.82 0.00 0.00 3.02
190 191 3.084536 TGGCAATGCTCCTTACATCAA 57.915 42.857 4.82 0.00 0.00 2.57
191 192 2.804986 TGGCAATGCTCCTTACATCA 57.195 45.000 4.82 0.00 0.00 3.07
192 193 3.637998 CATGGCAATGCTCCTTACATC 57.362 47.619 4.82 0.00 0.00 3.06
224 225 3.308401 AGCCAGTTCAGGGAATGTTTTT 58.692 40.909 0.00 0.00 0.00 1.94
225 226 2.962859 AGCCAGTTCAGGGAATGTTTT 58.037 42.857 0.00 0.00 0.00 2.43
226 227 2.683211 AGCCAGTTCAGGGAATGTTT 57.317 45.000 0.00 0.00 0.00 2.83
227 228 2.108952 AGAAGCCAGTTCAGGGAATGTT 59.891 45.455 0.00 0.00 37.67 2.71
228 229 1.707427 AGAAGCCAGTTCAGGGAATGT 59.293 47.619 0.00 0.00 37.67 2.71
229 230 2.503895 AGAAGCCAGTTCAGGGAATG 57.496 50.000 0.00 0.00 37.67 2.67
230 231 4.202264 CGTATAGAAGCCAGTTCAGGGAAT 60.202 45.833 0.00 0.00 37.67 3.01
231 232 3.132289 CGTATAGAAGCCAGTTCAGGGAA 59.868 47.826 0.00 0.00 37.67 3.97
232 233 2.693591 CGTATAGAAGCCAGTTCAGGGA 59.306 50.000 0.00 0.00 37.67 4.20
233 234 2.224066 CCGTATAGAAGCCAGTTCAGGG 60.224 54.545 0.00 0.00 37.67 4.45
234 235 2.693591 TCCGTATAGAAGCCAGTTCAGG 59.306 50.000 0.00 0.00 37.67 3.86
235 236 3.707793 GTCCGTATAGAAGCCAGTTCAG 58.292 50.000 0.00 0.00 37.67 3.02
236 237 2.098607 CGTCCGTATAGAAGCCAGTTCA 59.901 50.000 0.00 0.00 37.67 3.18
237 238 2.357009 TCGTCCGTATAGAAGCCAGTTC 59.643 50.000 0.00 0.00 35.08 3.01
238 239 2.372264 TCGTCCGTATAGAAGCCAGTT 58.628 47.619 0.00 0.00 0.00 3.16
239 240 2.048444 TCGTCCGTATAGAAGCCAGT 57.952 50.000 0.00 0.00 0.00 4.00
240 241 3.566523 GATTCGTCCGTATAGAAGCCAG 58.433 50.000 0.00 0.00 0.00 4.85
241 242 2.031420 CGATTCGTCCGTATAGAAGCCA 60.031 50.000 0.00 0.00 0.00 4.75
242 243 2.225019 TCGATTCGTCCGTATAGAAGCC 59.775 50.000 5.89 0.00 0.00 4.35
243 244 3.224750 GTCGATTCGTCCGTATAGAAGC 58.775 50.000 5.89 0.00 0.00 3.86
244 245 3.497640 AGGTCGATTCGTCCGTATAGAAG 59.502 47.826 15.04 0.00 39.76 2.85
245 246 3.470709 AGGTCGATTCGTCCGTATAGAA 58.529 45.455 15.04 0.00 39.76 2.10
246 247 3.117491 AGGTCGATTCGTCCGTATAGA 57.883 47.619 15.04 0.00 39.76 1.98
247 248 4.869297 AGATAGGTCGATTCGTCCGTATAG 59.131 45.833 15.04 0.00 39.76 1.31
248 249 4.825422 AGATAGGTCGATTCGTCCGTATA 58.175 43.478 15.04 4.86 39.76 1.47
249 250 3.672808 AGATAGGTCGATTCGTCCGTAT 58.327 45.455 15.04 12.79 39.76 3.06
250 251 3.062763 GAGATAGGTCGATTCGTCCGTA 58.937 50.000 15.04 9.37 39.76 4.02
251 252 1.872313 GAGATAGGTCGATTCGTCCGT 59.128 52.381 15.04 9.21 39.76 4.69
252 253 1.197264 GGAGATAGGTCGATTCGTCCG 59.803 57.143 15.04 0.00 39.76 4.79
253 254 2.506444 AGGAGATAGGTCGATTCGTCC 58.494 52.381 13.49 13.49 35.48 4.79
254 255 4.276431 AGAAAGGAGATAGGTCGATTCGTC 59.724 45.833 5.89 0.00 0.00 4.20
255 256 4.208746 AGAAAGGAGATAGGTCGATTCGT 58.791 43.478 5.89 0.00 0.00 3.85
256 257 4.517453 AGAGAAAGGAGATAGGTCGATTCG 59.483 45.833 0.00 0.00 0.00 3.34
257 258 5.768164 AGAGAGAAAGGAGATAGGTCGATTC 59.232 44.000 0.00 0.00 0.00 2.52
258 259 5.701224 AGAGAGAAAGGAGATAGGTCGATT 58.299 41.667 0.00 0.00 0.00 3.34
259 260 5.163141 TGAGAGAGAAAGGAGATAGGTCGAT 60.163 44.000 0.00 0.00 0.00 3.59
260 261 4.164413 TGAGAGAGAAAGGAGATAGGTCGA 59.836 45.833 0.00 0.00 0.00 4.20
261 262 4.456535 TGAGAGAGAAAGGAGATAGGTCG 58.543 47.826 0.00 0.00 0.00 4.79
262 263 6.015434 GGATTGAGAGAGAAAGGAGATAGGTC 60.015 46.154 0.00 0.00 0.00 3.85
263 264 5.838521 GGATTGAGAGAGAAAGGAGATAGGT 59.161 44.000 0.00 0.00 0.00 3.08
264 265 5.245977 GGGATTGAGAGAGAAAGGAGATAGG 59.754 48.000 0.00 0.00 0.00 2.57
265 266 6.077322 AGGGATTGAGAGAGAAAGGAGATAG 58.923 44.000 0.00 0.00 0.00 2.08
266 267 6.036926 AGGGATTGAGAGAGAAAGGAGATA 57.963 41.667 0.00 0.00 0.00 1.98
267 268 4.894622 AGGGATTGAGAGAGAAAGGAGAT 58.105 43.478 0.00 0.00 0.00 2.75
268 269 4.344938 AGGGATTGAGAGAGAAAGGAGA 57.655 45.455 0.00 0.00 0.00 3.71
269 270 6.077322 AGATAGGGATTGAGAGAGAAAGGAG 58.923 44.000 0.00 0.00 0.00 3.69
270 271 6.036926 AGATAGGGATTGAGAGAGAAAGGA 57.963 41.667 0.00 0.00 0.00 3.36
271 272 5.245977 GGAGATAGGGATTGAGAGAGAAAGG 59.754 48.000 0.00 0.00 0.00 3.11
272 273 5.837979 TGGAGATAGGGATTGAGAGAGAAAG 59.162 44.000 0.00 0.00 0.00 2.62
273 274 5.781827 TGGAGATAGGGATTGAGAGAGAAA 58.218 41.667 0.00 0.00 0.00 2.52
274 275 5.409590 TGGAGATAGGGATTGAGAGAGAA 57.590 43.478 0.00 0.00 0.00 2.87
275 276 5.613698 ATGGAGATAGGGATTGAGAGAGA 57.386 43.478 0.00 0.00 0.00 3.10
276 277 5.187576 GGAATGGAGATAGGGATTGAGAGAG 59.812 48.000 0.00 0.00 0.00 3.20
277 278 5.090139 GGAATGGAGATAGGGATTGAGAGA 58.910 45.833 0.00 0.00 0.00 3.10
278 279 5.092968 AGGAATGGAGATAGGGATTGAGAG 58.907 45.833 0.00 0.00 0.00 3.20
279 280 5.090139 GAGGAATGGAGATAGGGATTGAGA 58.910 45.833 0.00 0.00 0.00 3.27
280 281 4.842948 TGAGGAATGGAGATAGGGATTGAG 59.157 45.833 0.00 0.00 0.00 3.02
281 282 4.594920 GTGAGGAATGGAGATAGGGATTGA 59.405 45.833 0.00 0.00 0.00 2.57
282 283 4.562347 CGTGAGGAATGGAGATAGGGATTG 60.562 50.000 0.00 0.00 0.00 2.67
283 284 3.580458 CGTGAGGAATGGAGATAGGGATT 59.420 47.826 0.00 0.00 0.00 3.01
284 285 3.169099 CGTGAGGAATGGAGATAGGGAT 58.831 50.000 0.00 0.00 0.00 3.85
285 286 2.598565 CGTGAGGAATGGAGATAGGGA 58.401 52.381 0.00 0.00 0.00 4.20
300 301 0.946221 GTGTTGGAGCTCACCGTGAG 60.946 60.000 22.14 22.14 46.90 3.51
301 302 1.069090 GTGTTGGAGCTCACCGTGA 59.931 57.895 17.19 0.29 0.00 4.35
302 303 1.961277 GGTGTTGGAGCTCACCGTG 60.961 63.158 17.19 0.00 43.34 4.94
303 304 2.426023 GGTGTTGGAGCTCACCGT 59.574 61.111 17.19 0.00 43.34 4.83
306 307 3.050275 GCGGGTGTTGGAGCTCAC 61.050 66.667 17.19 6.65 0.00 3.51
307 308 3.241530 AGCGGGTGTTGGAGCTCA 61.242 61.111 17.19 0.00 34.48 4.26
309 310 4.379243 CGAGCGGGTGTTGGAGCT 62.379 66.667 0.00 0.00 43.33 4.09
323 324 0.024238 CTCGAAATTGACAGCGCGAG 59.976 55.000 12.10 3.23 39.12 5.03
324 325 1.351430 CCTCGAAATTGACAGCGCGA 61.351 55.000 12.10 0.00 0.00 5.87
325 326 1.059369 CCTCGAAATTGACAGCGCG 59.941 57.895 0.00 0.00 0.00 6.86
326 327 0.517316 AACCTCGAAATTGACAGCGC 59.483 50.000 0.00 0.00 0.00 5.92
327 328 1.798223 TCAACCTCGAAATTGACAGCG 59.202 47.619 6.87 0.00 29.89 5.18
332 333 0.787787 CGCGTCAACCTCGAAATTGA 59.212 50.000 0.00 6.87 32.44 2.57
333 334 0.179225 CCGCGTCAACCTCGAAATTG 60.179 55.000 4.92 2.56 0.00 2.32
334 335 1.908066 GCCGCGTCAACCTCGAAATT 61.908 55.000 4.92 0.00 0.00 1.82
335 336 2.388232 GCCGCGTCAACCTCGAAAT 61.388 57.895 4.92 0.00 0.00 2.17
336 337 3.039588 GCCGCGTCAACCTCGAAA 61.040 61.111 4.92 0.00 0.00 3.46
337 338 3.986006 AGCCGCGTCAACCTCGAA 61.986 61.111 4.92 0.00 0.00 3.71
338 339 4.717629 CAGCCGCGTCAACCTCGA 62.718 66.667 4.92 0.00 0.00 4.04
367 368 4.760047 CCTCCTCAACACCGCCGG 62.760 72.222 0.00 0.00 0.00 6.13
369 370 4.329545 TGCCTCCTCAACACCGCC 62.330 66.667 0.00 0.00 0.00 6.13
370 371 2.743928 CTGCCTCCTCAACACCGC 60.744 66.667 0.00 0.00 0.00 5.68
371 372 1.374758 GTCTGCCTCCTCAACACCG 60.375 63.158 0.00 0.00 0.00 4.94
372 373 1.374758 CGTCTGCCTCCTCAACACC 60.375 63.158 0.00 0.00 0.00 4.16
373 374 1.374758 CCGTCTGCCTCCTCAACAC 60.375 63.158 0.00 0.00 0.00 3.32
374 375 3.059982 CCGTCTGCCTCCTCAACA 58.940 61.111 0.00 0.00 0.00 3.33
375 376 2.435059 GCCGTCTGCCTCCTCAAC 60.435 66.667 0.00 0.00 0.00 3.18
376 377 2.922503 TGCCGTCTGCCTCCTCAA 60.923 61.111 0.00 0.00 40.16 3.02
377 378 3.385384 CTGCCGTCTGCCTCCTCA 61.385 66.667 0.00 0.00 40.16 3.86
378 379 4.828925 GCTGCCGTCTGCCTCCTC 62.829 72.222 0.00 0.00 40.16 3.71
385 386 3.826754 TAGAGCCGCTGCCGTCTG 61.827 66.667 0.00 0.00 38.69 3.51
386 387 3.827898 GTAGAGCCGCTGCCGTCT 61.828 66.667 0.00 0.00 38.69 4.18
387 388 2.837371 AAAGTAGAGCCGCTGCCGTC 62.837 60.000 0.00 0.00 38.69 4.79
388 389 2.837371 GAAAGTAGAGCCGCTGCCGT 62.837 60.000 0.00 0.00 38.69 5.68
389 390 2.125512 AAAGTAGAGCCGCTGCCG 60.126 61.111 0.00 0.00 38.69 5.69
390 391 0.808060 GAGAAAGTAGAGCCGCTGCC 60.808 60.000 0.00 0.00 38.69 4.85
391 392 0.174617 AGAGAAAGTAGAGCCGCTGC 59.825 55.000 0.00 0.00 37.95 5.25
392 393 1.474478 TGAGAGAAAGTAGAGCCGCTG 59.526 52.381 0.00 0.00 0.00 5.18
393 394 1.840737 TGAGAGAAAGTAGAGCCGCT 58.159 50.000 0.00 0.00 0.00 5.52
394 395 2.880963 ATGAGAGAAAGTAGAGCCGC 57.119 50.000 0.00 0.00 0.00 6.53
395 396 5.010112 TGGATTATGAGAGAAAGTAGAGCCG 59.990 44.000 0.00 0.00 0.00 5.52
396 397 6.412362 TGGATTATGAGAGAAAGTAGAGCC 57.588 41.667 0.00 0.00 0.00 4.70
402 403 9.956640 GATGGAATATGGATTATGAGAGAAAGT 57.043 33.333 0.00 0.00 0.00 2.66
403 404 9.393512 GGATGGAATATGGATTATGAGAGAAAG 57.606 37.037 0.00 0.00 0.00 2.62
404 405 9.120658 AGGATGGAATATGGATTATGAGAGAAA 57.879 33.333 0.00 0.00 0.00 2.52
405 406 8.691194 AGGATGGAATATGGATTATGAGAGAA 57.309 34.615 0.00 0.00 0.00 2.87
406 407 8.546322 CAAGGATGGAATATGGATTATGAGAGA 58.454 37.037 0.00 0.00 0.00 3.10
407 408 8.546322 TCAAGGATGGAATATGGATTATGAGAG 58.454 37.037 0.00 0.00 0.00 3.20
408 409 8.324306 GTCAAGGATGGAATATGGATTATGAGA 58.676 37.037 0.00 0.00 0.00 3.27
409 410 7.279536 CGTCAAGGATGGAATATGGATTATGAG 59.720 40.741 0.00 0.00 0.00 2.90
410 411 7.105588 CGTCAAGGATGGAATATGGATTATGA 58.894 38.462 0.00 0.00 0.00 2.15
411 412 6.317140 CCGTCAAGGATGGAATATGGATTATG 59.683 42.308 0.00 0.00 45.00 1.90
412 413 6.012508 ACCGTCAAGGATGGAATATGGATTAT 60.013 38.462 11.29 0.00 45.00 1.28
413 414 5.309543 ACCGTCAAGGATGGAATATGGATTA 59.690 40.000 11.29 0.00 45.00 1.75
414 415 4.104738 ACCGTCAAGGATGGAATATGGATT 59.895 41.667 11.29 0.00 45.00 3.01
415 416 3.652869 ACCGTCAAGGATGGAATATGGAT 59.347 43.478 11.29 0.00 45.00 3.41
416 417 3.045634 ACCGTCAAGGATGGAATATGGA 58.954 45.455 11.29 0.00 45.00 3.41
417 418 3.141398 CACCGTCAAGGATGGAATATGG 58.859 50.000 11.29 0.00 45.00 2.74
418 419 3.808728 ACACCGTCAAGGATGGAATATG 58.191 45.455 11.29 2.03 45.00 1.78
419 420 5.365619 GTTACACCGTCAAGGATGGAATAT 58.634 41.667 11.29 0.00 45.00 1.28
420 421 4.383335 GGTTACACCGTCAAGGATGGAATA 60.383 45.833 11.29 0.95 45.00 1.75
421 422 3.606687 GTTACACCGTCAAGGATGGAAT 58.393 45.455 11.29 1.81 45.00 3.01
422 423 2.289819 GGTTACACCGTCAAGGATGGAA 60.290 50.000 11.29 0.00 45.00 3.53
423 424 1.276989 GGTTACACCGTCAAGGATGGA 59.723 52.381 11.29 0.00 45.00 3.41
424 425 1.002659 TGGTTACACCGTCAAGGATGG 59.997 52.381 2.97 2.97 42.58 3.51
425 426 2.465860 TGGTTACACCGTCAAGGATG 57.534 50.000 0.00 0.00 42.58 3.51
426 427 2.355716 CCATGGTTACACCGTCAAGGAT 60.356 50.000 2.57 0.00 42.58 3.24
427 428 1.002659 CCATGGTTACACCGTCAAGGA 59.997 52.381 2.57 0.00 42.58 3.36
428 429 1.448985 CCATGGTTACACCGTCAAGG 58.551 55.000 2.57 0.00 42.58 3.61
429 430 0.802494 GCCATGGTTACACCGTCAAG 59.198 55.000 14.67 0.00 42.58 3.02
430 431 0.108774 TGCCATGGTTACACCGTCAA 59.891 50.000 14.67 0.00 42.58 3.18
431 432 0.108774 TTGCCATGGTTACACCGTCA 59.891 50.000 14.67 0.00 42.58 4.35
432 433 1.240256 TTTGCCATGGTTACACCGTC 58.760 50.000 14.67 0.00 42.58 4.79
433 434 1.917872 ATTTGCCATGGTTACACCGT 58.082 45.000 14.67 0.00 42.58 4.83
434 435 3.311486 AAATTTGCCATGGTTACACCG 57.689 42.857 14.67 0.00 42.58 4.94
435 436 6.639563 AGAATAAATTTGCCATGGTTACACC 58.360 36.000 14.67 0.00 39.22 4.16
436 437 8.546597 AAAGAATAAATTTGCCATGGTTACAC 57.453 30.769 14.67 0.00 0.00 2.90
437 438 9.646427 GTAAAGAATAAATTTGCCATGGTTACA 57.354 29.630 14.67 0.00 0.00 2.41
438 439 9.646427 TGTAAAGAATAAATTTGCCATGGTTAC 57.354 29.630 14.67 9.47 0.00 2.50
440 441 9.382275 GATGTAAAGAATAAATTTGCCATGGTT 57.618 29.630 14.67 1.29 0.00 3.67
441 442 8.538701 TGATGTAAAGAATAAATTTGCCATGGT 58.461 29.630 14.67 0.00 0.00 3.55
442 443 8.945481 TGATGTAAAGAATAAATTTGCCATGG 57.055 30.769 7.63 7.63 0.00 3.66
445 446 9.748708 GCTATGATGTAAAGAATAAATTTGCCA 57.251 29.630 0.00 0.00 0.00 4.92
446 447 9.748708 TGCTATGATGTAAAGAATAAATTTGCC 57.251 29.630 0.00 0.00 0.00 4.52
477 478 2.478831 GCAAAGCCGTTCCATGAAAAA 58.521 42.857 0.00 0.00 0.00 1.94
478 479 1.270041 GGCAAAGCCGTTCCATGAAAA 60.270 47.619 0.00 0.00 39.62 2.29
479 480 0.316841 GGCAAAGCCGTTCCATGAAA 59.683 50.000 0.00 0.00 39.62 2.69
480 481 1.963679 GGCAAAGCCGTTCCATGAA 59.036 52.632 0.00 0.00 39.62 2.57
481 482 3.680156 GGCAAAGCCGTTCCATGA 58.320 55.556 0.00 0.00 39.62 3.07
491 492 2.035066 ACTTTGACATGTGAGGCAAAGC 59.965 45.455 25.90 3.70 46.74 3.51
493 494 2.223782 GCACTTTGACATGTGAGGCAAA 60.224 45.455 1.15 6.67 36.38 3.68
494 495 1.337703 GCACTTTGACATGTGAGGCAA 59.662 47.619 1.15 0.00 36.38 4.52
495 496 0.953727 GCACTTTGACATGTGAGGCA 59.046 50.000 1.15 0.00 36.38 4.75
496 497 0.953727 TGCACTTTGACATGTGAGGC 59.046 50.000 1.15 5.26 36.38 4.70
497 498 6.709397 AGATATATGCACTTTGACATGTGAGG 59.291 38.462 1.15 0.00 36.38 3.86
498 499 7.725818 AGATATATGCACTTTGACATGTGAG 57.274 36.000 1.15 0.58 36.38 3.51
499 500 7.989170 AGAAGATATATGCACTTTGACATGTGA 59.011 33.333 1.15 0.00 36.38 3.58
500 501 8.151141 AGAAGATATATGCACTTTGACATGTG 57.849 34.615 1.15 5.14 37.26 3.21
501 502 8.743085 AAGAAGATATATGCACTTTGACATGT 57.257 30.769 0.00 0.00 0.00 3.21
504 505 9.453572 AGAAAAGAAGATATATGCACTTTGACA 57.546 29.630 0.00 0.00 0.00 3.58
507 508 9.512435 CCAAGAAAAGAAGATATATGCACTTTG 57.488 33.333 0.00 0.00 0.00 2.77
508 509 9.247861 ACCAAGAAAAGAAGATATATGCACTTT 57.752 29.630 0.00 0.00 0.00 2.66
509 510 8.680903 CACCAAGAAAAGAAGATATATGCACTT 58.319 33.333 0.00 0.00 0.00 3.16
510 511 7.284034 CCACCAAGAAAAGAAGATATATGCACT 59.716 37.037 0.00 0.00 0.00 4.40
511 512 7.420800 CCACCAAGAAAAGAAGATATATGCAC 58.579 38.462 0.00 0.00 0.00 4.57
512 513 6.547141 CCCACCAAGAAAAGAAGATATATGCA 59.453 38.462 0.00 0.00 0.00 3.96
513 514 6.547510 ACCCACCAAGAAAAGAAGATATATGC 59.452 38.462 0.00 0.00 0.00 3.14
514 515 7.013655 CCACCCACCAAGAAAAGAAGATATATG 59.986 40.741 0.00 0.00 0.00 1.78
515 516 7.062957 CCACCCACCAAGAAAAGAAGATATAT 58.937 38.462 0.00 0.00 0.00 0.86
516 517 6.423182 CCACCCACCAAGAAAAGAAGATATA 58.577 40.000 0.00 0.00 0.00 0.86
517 518 5.264395 CCACCCACCAAGAAAAGAAGATAT 58.736 41.667 0.00 0.00 0.00 1.63
518 519 4.508405 CCCACCCACCAAGAAAAGAAGATA 60.508 45.833 0.00 0.00 0.00 1.98
519 520 3.500343 CCACCCACCAAGAAAAGAAGAT 58.500 45.455 0.00 0.00 0.00 2.40
520 521 2.424234 CCCACCCACCAAGAAAAGAAGA 60.424 50.000 0.00 0.00 0.00 2.87
521 522 1.963515 CCCACCCACCAAGAAAAGAAG 59.036 52.381 0.00 0.00 0.00 2.85
522 523 1.289530 ACCCACCCACCAAGAAAAGAA 59.710 47.619 0.00 0.00 0.00 2.52
523 524 0.930726 ACCCACCCACCAAGAAAAGA 59.069 50.000 0.00 0.00 0.00 2.52
524 525 1.039856 CACCCACCCACCAAGAAAAG 58.960 55.000 0.00 0.00 0.00 2.27
525 526 0.336737 ACACCCACCCACCAAGAAAA 59.663 50.000 0.00 0.00 0.00 2.29
526 527 0.396417 CACACCCACCCACCAAGAAA 60.396 55.000 0.00 0.00 0.00 2.52
527 528 1.228793 CACACCCACCCACCAAGAA 59.771 57.895 0.00 0.00 0.00 2.52
528 529 2.004120 ACACACCCACCCACCAAGA 61.004 57.895 0.00 0.00 0.00 3.02
529 530 1.827789 CACACACCCACCCACCAAG 60.828 63.158 0.00 0.00 0.00 3.61
530 531 2.277072 CACACACCCACCCACCAA 59.723 61.111 0.00 0.00 0.00 3.67
531 532 3.018193 ACACACACCCACCCACCA 61.018 61.111 0.00 0.00 0.00 4.17
532 533 2.518349 CACACACACCCACCCACC 60.518 66.667 0.00 0.00 0.00 4.61
533 534 3.216292 GCACACACACCCACCCAC 61.216 66.667 0.00 0.00 0.00 4.61
534 535 3.288137 TTGCACACACACCCACCCA 62.288 57.895 0.00 0.00 0.00 4.51
535 536 2.441164 TTGCACACACACCCACCC 60.441 61.111 0.00 0.00 0.00 4.61
536 537 1.319614 AAGTTGCACACACACCCACC 61.320 55.000 0.00 0.00 0.00 4.61
537 538 0.530288 AAAGTTGCACACACACCCAC 59.470 50.000 0.00 0.00 0.00 4.61
538 539 2.130272 TAAAGTTGCACACACACCCA 57.870 45.000 0.00 0.00 0.00 4.51
539 540 3.726291 AATAAAGTTGCACACACACCC 57.274 42.857 0.00 0.00 0.00 4.61
540 541 6.404293 CCCTATAATAAAGTTGCACACACACC 60.404 42.308 0.00 0.00 0.00 4.16
541 542 6.150474 ACCCTATAATAAAGTTGCACACACAC 59.850 38.462 0.00 0.00 0.00 3.82
542 543 6.150307 CACCCTATAATAAAGTTGCACACACA 59.850 38.462 0.00 0.00 0.00 3.72
543 544 6.551736 CACCCTATAATAAAGTTGCACACAC 58.448 40.000 0.00 0.00 0.00 3.82
544 545 5.124776 GCACCCTATAATAAAGTTGCACACA 59.875 40.000 0.00 0.00 0.00 3.72
545 546 5.124776 TGCACCCTATAATAAAGTTGCACAC 59.875 40.000 0.00 0.00 0.00 3.82
546 547 5.257262 TGCACCCTATAATAAAGTTGCACA 58.743 37.500 0.00 0.00 0.00 4.57
547 548 5.828299 TGCACCCTATAATAAAGTTGCAC 57.172 39.130 0.00 0.00 0.00 4.57
548 549 5.301551 CCATGCACCCTATAATAAAGTTGCA 59.698 40.000 0.00 0.00 0.00 4.08
549 550 5.772521 CCATGCACCCTATAATAAAGTTGC 58.227 41.667 0.00 0.00 0.00 4.17
550 551 5.301551 TGCCATGCACCCTATAATAAAGTTG 59.698 40.000 0.00 0.00 31.71 3.16
551 552 5.454062 TGCCATGCACCCTATAATAAAGTT 58.546 37.500 0.00 0.00 31.71 2.66
552 553 5.060427 TGCCATGCACCCTATAATAAAGT 57.940 39.130 0.00 0.00 31.71 2.66
553 554 6.594788 AATGCCATGCACCCTATAATAAAG 57.405 37.500 0.00 0.00 43.04 1.85
554 555 6.992664 AAATGCCATGCACCCTATAATAAA 57.007 33.333 0.00 0.00 43.04 1.40
555 556 6.992664 AAAATGCCATGCACCCTATAATAA 57.007 33.333 0.00 0.00 43.04 1.40
556 557 7.176515 CACTAAAATGCCATGCACCCTATAATA 59.823 37.037 0.00 0.00 43.04 0.98
557 558 6.015180 CACTAAAATGCCATGCACCCTATAAT 60.015 38.462 0.00 0.00 43.04 1.28
558 559 5.301551 CACTAAAATGCCATGCACCCTATAA 59.698 40.000 0.00 0.00 43.04 0.98
559 560 4.826733 CACTAAAATGCCATGCACCCTATA 59.173 41.667 0.00 0.00 43.04 1.31
560 561 3.638160 CACTAAAATGCCATGCACCCTAT 59.362 43.478 0.00 0.00 43.04 2.57
561 562 3.023119 CACTAAAATGCCATGCACCCTA 58.977 45.455 0.00 0.00 43.04 3.53
562 563 1.826720 CACTAAAATGCCATGCACCCT 59.173 47.619 0.00 0.00 43.04 4.34
563 564 1.134729 CCACTAAAATGCCATGCACCC 60.135 52.381 0.00 0.00 43.04 4.61
564 565 1.550072 ACCACTAAAATGCCATGCACC 59.450 47.619 0.00 0.00 43.04 5.01
565 566 2.230992 TGACCACTAAAATGCCATGCAC 59.769 45.455 0.00 0.00 43.04 4.57
566 567 2.523245 TGACCACTAAAATGCCATGCA 58.477 42.857 0.00 0.00 44.86 3.96
567 568 3.591196 TTGACCACTAAAATGCCATGC 57.409 42.857 0.00 0.00 0.00 4.06
568 569 3.919804 CGTTTGACCACTAAAATGCCATG 59.080 43.478 0.00 0.00 0.00 3.66
569 570 3.823873 TCGTTTGACCACTAAAATGCCAT 59.176 39.130 0.00 0.00 0.00 4.40
570 571 3.003897 GTCGTTTGACCACTAAAATGCCA 59.996 43.478 0.00 0.00 39.30 4.92
571 572 3.003897 TGTCGTTTGACCACTAAAATGCC 59.996 43.478 0.00 0.00 44.86 4.40
572 573 4.217754 TGTCGTTTGACCACTAAAATGC 57.782 40.909 0.00 0.00 44.86 3.56
573 574 7.692908 AATTTGTCGTTTGACCACTAAAATG 57.307 32.000 0.00 0.00 44.86 2.32
574 575 7.254286 GCAAATTTGTCGTTTGACCACTAAAAT 60.254 33.333 19.03 0.00 44.86 1.82
575 576 6.035112 GCAAATTTGTCGTTTGACCACTAAAA 59.965 34.615 19.03 0.00 44.86 1.52
576 577 5.517054 GCAAATTTGTCGTTTGACCACTAAA 59.483 36.000 19.03 0.00 44.86 1.85
577 578 5.038033 GCAAATTTGTCGTTTGACCACTAA 58.962 37.500 19.03 0.00 44.86 2.24
578 579 4.096532 TGCAAATTTGTCGTTTGACCACTA 59.903 37.500 19.03 0.00 44.86 2.74
579 580 3.119316 TGCAAATTTGTCGTTTGACCACT 60.119 39.130 19.03 0.00 44.86 4.00
580 581 3.182967 TGCAAATTTGTCGTTTGACCAC 58.817 40.909 19.03 0.00 44.86 4.16
581 582 3.510388 TGCAAATTTGTCGTTTGACCA 57.490 38.095 19.03 2.99 44.86 4.02
582 583 4.047822 TCATGCAAATTTGTCGTTTGACC 58.952 39.130 19.03 0.40 44.86 4.02
583 584 5.633996 TTCATGCAAATTTGTCGTTTGAC 57.366 34.783 19.03 1.08 45.71 3.18
584 585 5.752472 ACATTCATGCAAATTTGTCGTTTGA 59.248 32.000 19.03 11.73 38.51 2.69
585 586 5.976586 ACATTCATGCAAATTTGTCGTTTG 58.023 33.333 19.03 12.12 39.08 2.93
586 587 6.601741 AACATTCATGCAAATTTGTCGTTT 57.398 29.167 19.03 2.56 0.00 3.60
587 588 6.601741 AAACATTCATGCAAATTTGTCGTT 57.398 29.167 19.03 9.26 0.00 3.85
588 589 6.601741 AAAACATTCATGCAAATTTGTCGT 57.398 29.167 19.03 10.12 0.00 4.34
589 590 9.596677 AATTAAAACATTCATGCAAATTTGTCG 57.403 25.926 19.03 8.37 0.00 4.35
594 595 9.896263 GGAACAATTAAAACATTCATGCAAATT 57.104 25.926 0.00 0.00 0.00 1.82
595 596 8.513774 GGGAACAATTAAAACATTCATGCAAAT 58.486 29.630 0.00 0.00 0.00 2.32
596 597 7.500227 TGGGAACAATTAAAACATTCATGCAAA 59.500 29.630 0.00 0.00 37.44 3.68
597 598 6.994496 TGGGAACAATTAAAACATTCATGCAA 59.006 30.769 0.00 0.00 37.44 4.08
598 599 6.528321 TGGGAACAATTAAAACATTCATGCA 58.472 32.000 0.00 0.00 37.44 3.96
616 617 4.021192 TGAGAAGAAAATTGCCATGGGAAC 60.021 41.667 22.15 8.55 0.00 3.62
617 618 4.158786 TGAGAAGAAAATTGCCATGGGAA 58.841 39.130 21.95 21.95 0.00 3.97
618 619 3.777087 TGAGAAGAAAATTGCCATGGGA 58.223 40.909 15.13 8.24 0.00 4.37
619 620 4.439057 CATGAGAAGAAAATTGCCATGGG 58.561 43.478 15.13 0.00 0.00 4.00
620 621 4.160814 TCCATGAGAAGAAAATTGCCATGG 59.839 41.667 7.63 7.63 46.49 3.66
621 622 5.126545 TCTCCATGAGAAGAAAATTGCCATG 59.873 40.000 0.00 0.00 35.59 3.66
622 623 5.266788 TCTCCATGAGAAGAAAATTGCCAT 58.733 37.500 0.00 0.00 35.59 4.40
623 624 4.665451 TCTCCATGAGAAGAAAATTGCCA 58.335 39.130 0.00 0.00 35.59 4.92
624 625 4.704057 ACTCTCCATGAGAAGAAAATTGCC 59.296 41.667 0.00 0.00 45.39 4.52
625 626 5.413833 TGACTCTCCATGAGAAGAAAATTGC 59.586 40.000 0.00 0.00 45.39 3.56
626 627 7.444629 TTGACTCTCCATGAGAAGAAAATTG 57.555 36.000 0.00 0.00 45.39 2.32
627 628 8.521176 CAATTGACTCTCCATGAGAAGAAAATT 58.479 33.333 0.00 0.00 45.39 1.82
628 629 7.362747 GCAATTGACTCTCCATGAGAAGAAAAT 60.363 37.037 10.34 0.00 45.39 1.82
629 630 6.072286 GCAATTGACTCTCCATGAGAAGAAAA 60.072 38.462 10.34 0.00 45.39 2.29
630 631 5.413833 GCAATTGACTCTCCATGAGAAGAAA 59.586 40.000 10.34 0.00 45.39 2.52
631 632 4.940046 GCAATTGACTCTCCATGAGAAGAA 59.060 41.667 10.34 0.00 45.39 2.52
632 633 4.019950 TGCAATTGACTCTCCATGAGAAGA 60.020 41.667 10.34 0.00 45.39 2.87
633 634 4.259356 TGCAATTGACTCTCCATGAGAAG 58.741 43.478 10.34 0.00 45.39 2.85
634 635 4.290711 TGCAATTGACTCTCCATGAGAA 57.709 40.909 10.34 0.00 45.39 2.87
635 636 3.986996 TGCAATTGACTCTCCATGAGA 57.013 42.857 10.34 0.00 45.39 3.27
637 638 4.290711 TCTTGCAATTGACTCTCCATGA 57.709 40.909 10.34 1.64 0.00 3.07
638 639 5.159209 GTTTCTTGCAATTGACTCTCCATG 58.841 41.667 10.34 0.00 0.00 3.66
639 640 4.219288 GGTTTCTTGCAATTGACTCTCCAT 59.781 41.667 10.34 0.00 0.00 3.41
640 641 3.569701 GGTTTCTTGCAATTGACTCTCCA 59.430 43.478 10.34 0.00 0.00 3.86
641 642 3.569701 TGGTTTCTTGCAATTGACTCTCC 59.430 43.478 10.34 2.96 0.00 3.71
642 643 4.540824 GTGGTTTCTTGCAATTGACTCTC 58.459 43.478 10.34 0.00 0.00 3.20
1108 1121 2.089600 AAATCCCCAAACCGAAACCA 57.910 45.000 0.00 0.00 0.00 3.67
1869 1990 9.586435 CATTTACTTCCTTTTTCACTTCACTTT 57.414 29.630 0.00 0.00 0.00 2.66
1923 2044 3.348119 TGAACAACACCACAACTGCTTA 58.652 40.909 0.00 0.00 0.00 3.09
2018 2139 1.967779 TGCCATCCTATTAGCACGCTA 59.032 47.619 0.00 0.00 0.00 4.26
2438 2564 5.924356 TCGCAAATATCCTTGATGTCCTTA 58.076 37.500 0.00 0.00 0.00 2.69
2547 2673 5.473504 CCCTACTTCAAATACTGCAAACTGT 59.526 40.000 0.00 0.00 0.00 3.55
2645 2924 9.770097 CTAGTTAACATCATGACAGTATCCAAT 57.230 33.333 8.61 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.