Multiple sequence alignment - TraesCS2D01G153000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G153000 chr2D 100.000 4404 0 0 1 4404 95683002 95687405 0.000000e+00 8133.0
1 TraesCS2D01G153000 chr2D 91.475 1220 48 27 610 1815 95655651 95654474 0.000000e+00 1626.0
2 TraesCS2D01G153000 chr2D 89.780 998 60 14 2837 3809 95668003 95668983 0.000000e+00 1240.0
3 TraesCS2D01G153000 chr2D 83.832 1169 92 42 664 1815 95666925 95668013 0.000000e+00 1022.0
4 TraesCS2D01G153000 chr2D 94.432 449 14 8 2837 3280 95654484 95654042 0.000000e+00 680.0
5 TraesCS2D01G153000 chr2D 82.057 418 73 2 1402 1818 95649043 95648627 5.420000e-94 355.0
6 TraesCS2D01G153000 chr2D 88.803 259 21 5 113 364 95666289 95666546 1.190000e-80 311.0
7 TraesCS2D01G153000 chr2D 91.111 90 6 2 377 464 95655914 95655825 2.150000e-23 121.0
8 TraesCS2D01G153000 chr2D 95.000 60 3 0 538 597 95683459 95683518 1.300000e-15 95.3
9 TraesCS2D01G153000 chr2D 95.000 60 3 0 458 517 95683539 95683598 1.300000e-15 95.3
10 TraesCS2D01G153000 chr2D 91.489 47 3 1 615 660 95683494 95683540 3.680000e-06 63.9
11 TraesCS2D01G153000 chr2D 91.489 47 3 1 493 539 95683616 95683661 3.680000e-06 63.9
12 TraesCS2D01G153000 chr2D 92.683 41 2 1 499 539 95655640 95655601 1.710000e-04 58.4
13 TraesCS2D01G153000 chr6B 96.069 992 34 4 1841 2827 663188321 663187330 0.000000e+00 1611.0
14 TraesCS2D01G153000 chr6B 84.592 331 41 9 2508 2829 8238434 8238763 1.980000e-83 320.0
15 TraesCS2D01G153000 chr6B 91.489 47 1 3 3540 3584 356526493 356526448 1.320000e-05 62.1
16 TraesCS2D01G153000 chr2A 89.910 1219 81 27 610 1815 94205528 94204339 0.000000e+00 1531.0
17 TraesCS2D01G153000 chr2A 89.525 821 59 10 2022 2829 750282541 750281735 0.000000e+00 1014.0
18 TraesCS2D01G153000 chr2A 85.061 1071 70 36 754 1815 94275416 94276405 0.000000e+00 1009.0
19 TraesCS2D01G153000 chr2A 89.039 593 36 12 2837 3425 94204349 94203782 0.000000e+00 708.0
20 TraesCS2D01G153000 chr2A 85.391 486 52 14 2082 2558 72509972 72509497 1.840000e-133 486.0
21 TraesCS2D01G153000 chr2A 86.649 382 29 9 4 364 94274615 94274995 1.910000e-108 403.0
22 TraesCS2D01G153000 chr2A 81.731 416 72 4 1402 1815 94162156 94161743 1.170000e-90 344.0
23 TraesCS2D01G153000 chr2A 87.375 301 29 6 3876 4169 94276646 94276944 1.960000e-88 337.0
24 TraesCS2D01G153000 chr2A 95.980 199 8 0 2839 3037 94276397 94276595 1.530000e-84 324.0
25 TraesCS2D01G153000 chr2A 90.805 87 7 1 377 462 94205786 94205700 1.000000e-21 115.0
26 TraesCS2D01G153000 chr2A 97.297 37 1 0 499 535 94205517 94205481 3.680000e-06 63.9
27 TraesCS2D01G153000 chr2B 88.562 1224 75 38 610 1815 147286606 147285430 0.000000e+00 1424.0
28 TraesCS2D01G153000 chr2B 85.021 1175 92 37 652 1815 147409077 147407976 0.000000e+00 1118.0
29 TraesCS2D01G153000 chr2B 91.443 596 30 13 2837 3425 147285440 147284859 0.000000e+00 798.0
30 TraesCS2D01G153000 chr2B 84.892 695 68 17 2156 2829 800311404 800310726 0.000000e+00 667.0
31 TraesCS2D01G153000 chr2B 85.639 571 69 7 3828 4390 147435312 147435877 4.910000e-164 588.0
32 TraesCS2D01G153000 chr2B 94.529 329 18 0 2895 3223 147405301 147404973 3.930000e-140 508.0
33 TraesCS2D01G153000 chr2B 93.532 201 12 1 3549 3748 147431762 147431962 9.260000e-77 298.0
34 TraesCS2D01G153000 chr2B 79.241 395 68 10 1401 1788 146964249 146964636 3.380000e-66 263.0
35 TraesCS2D01G153000 chr2B 86.996 223 22 4 7 224 147289859 147290079 1.220000e-60 244.0
36 TraesCS2D01G153000 chr2B 89.103 156 15 2 226 381 151655520 151655673 4.500000e-45 193.0
37 TraesCS2D01G153000 chr2B 93.548 93 4 2 377 467 147287023 147286931 2.140000e-28 137.0
38 TraesCS2D01G153000 chr2B 96.970 66 2 0 2837 2902 147407986 147407921 1.290000e-20 111.0
39 TraesCS2D01G153000 chr2B 90.698 43 3 1 3540 3581 262902232 262902274 6.150000e-04 56.5
40 TraesCS2D01G153000 chr4D 88.703 1018 73 22 1816 2829 500053197 500052218 0.000000e+00 1205.0
41 TraesCS2D01G153000 chr3A 88.703 1018 65 20 1841 2839 652348733 652349719 0.000000e+00 1197.0
42 TraesCS2D01G153000 chr3A 88.118 1052 66 16 1816 2839 652564129 652565149 0.000000e+00 1195.0
43 TraesCS2D01G153000 chr3A 84.493 690 63 25 2156 2829 163807186 163807847 3.710000e-180 641.0
44 TraesCS2D01G153000 chr3A 92.803 264 18 1 1852 2115 723443976 723443714 8.940000e-102 381.0
45 TraesCS2D01G153000 chr3A 90.446 157 12 2 226 381 393906787 393906941 2.080000e-48 204.0
46 TraesCS2D01G153000 chr3A 92.857 42 2 1 3541 3581 459861660 459861619 4.760000e-05 60.2
47 TraesCS2D01G153000 chr4B 90.250 841 66 9 2002 2829 470827932 470827095 0.000000e+00 1085.0
48 TraesCS2D01G153000 chrUn 89.731 818 41 17 1816 2595 79621657 79622469 0.000000e+00 1005.0
49 TraesCS2D01G153000 chrUn 83.135 587 83 12 1854 2431 309834862 309834283 5.050000e-144 521.0
50 TraesCS2D01G153000 chr7A 96.451 479 15 2 2353 2829 40439442 40439920 0.000000e+00 789.0
51 TraesCS2D01G153000 chr7A 96.486 313 7 3 1841 2149 40438972 40439284 8.450000e-142 514.0
52 TraesCS2D01G153000 chr7A 75.219 343 77 6 2862 3200 574754545 574754883 5.900000e-34 156.0
53 TraesCS2D01G153000 chr5D 85.147 680 65 19 2156 2817 555734566 555733905 0.000000e+00 664.0
54 TraesCS2D01G153000 chr4A 84.639 332 41 7 2507 2829 695506997 695507327 5.490000e-84 322.0
55 TraesCS2D01G153000 chr1A 83.217 286 34 10 1841 2118 9695296 9695575 2.630000e-62 250.0
56 TraesCS2D01G153000 chr7D 76.316 342 73 6 2862 3199 506883323 506883660 4.530000e-40 176.0
57 TraesCS2D01G153000 chr5B 85.256 156 20 3 226 381 530608006 530607854 1.640000e-34 158.0
58 TraesCS2D01G153000 chr7B 75.291 344 75 8 2862 3200 535615016 535615354 5.900000e-34 156.0
59 TraesCS2D01G153000 chr7B 73.770 366 81 11 2840 3199 535506738 535507094 3.570000e-26 130.0
60 TraesCS2D01G153000 chr6A 83.708 178 11 8 1809 1970 610292032 610292207 7.630000e-33 152.0
61 TraesCS2D01G153000 chr6A 90.698 43 3 1 3540 3581 127607941 127607983 6.150000e-04 56.5
62 TraesCS2D01G153000 chr6D 92.500 40 1 2 3546 3584 101231518 101231480 6.150000e-04 56.5
63 TraesCS2D01G153000 chr3D 97.059 34 0 1 3549 3581 404291648 404291681 6.150000e-04 56.5
64 TraesCS2D01G153000 chr3B 97.059 34 0 1 3549 3581 647816589 647816556 6.150000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G153000 chr2D 95683002 95687405 4403 False 1690.280000 8133 94.595600 1 4404 5 chr2D.!!$F2 4403
1 TraesCS2D01G153000 chr2D 95666289 95668983 2694 False 857.666667 1240 87.471667 113 3809 3 chr2D.!!$F1 3696
2 TraesCS2D01G153000 chr2D 95654042 95655914 1872 True 621.350000 1626 92.425250 377 3280 4 chr2D.!!$R2 2903
3 TraesCS2D01G153000 chr6B 663187330 663188321 991 True 1611.000000 1611 96.069000 1841 2827 1 chr6B.!!$R2 986
4 TraesCS2D01G153000 chr2A 750281735 750282541 806 True 1014.000000 1014 89.525000 2022 2829 1 chr2A.!!$R3 807
5 TraesCS2D01G153000 chr2A 94203782 94205786 2004 True 604.475000 1531 91.762750 377 3425 4 chr2A.!!$R4 3048
6 TraesCS2D01G153000 chr2A 94274615 94276944 2329 False 518.250000 1009 88.766250 4 4169 4 chr2A.!!$F1 4165
7 TraesCS2D01G153000 chr2B 147284859 147287023 2164 True 786.333333 1424 91.184333 377 3425 3 chr2B.!!$R2 3048
8 TraesCS2D01G153000 chr2B 800310726 800311404 678 True 667.000000 667 84.892000 2156 2829 1 chr2B.!!$R1 673
9 TraesCS2D01G153000 chr2B 147404973 147409077 4104 True 579.000000 1118 92.173333 652 3223 3 chr2B.!!$R3 2571
10 TraesCS2D01G153000 chr2B 147431762 147435877 4115 False 443.000000 588 89.585500 3549 4390 2 chr2B.!!$F5 841
11 TraesCS2D01G153000 chr4D 500052218 500053197 979 True 1205.000000 1205 88.703000 1816 2829 1 chr4D.!!$R1 1013
12 TraesCS2D01G153000 chr3A 652348733 652349719 986 False 1197.000000 1197 88.703000 1841 2839 1 chr3A.!!$F3 998
13 TraesCS2D01G153000 chr3A 652564129 652565149 1020 False 1195.000000 1195 88.118000 1816 2839 1 chr3A.!!$F4 1023
14 TraesCS2D01G153000 chr3A 163807186 163807847 661 False 641.000000 641 84.493000 2156 2829 1 chr3A.!!$F1 673
15 TraesCS2D01G153000 chr4B 470827095 470827932 837 True 1085.000000 1085 90.250000 2002 2829 1 chr4B.!!$R1 827
16 TraesCS2D01G153000 chrUn 79621657 79622469 812 False 1005.000000 1005 89.731000 1816 2595 1 chrUn.!!$F1 779
17 TraesCS2D01G153000 chrUn 309834283 309834862 579 True 521.000000 521 83.135000 1854 2431 1 chrUn.!!$R1 577
18 TraesCS2D01G153000 chr7A 40438972 40439920 948 False 651.500000 789 96.468500 1841 2829 2 chr7A.!!$F2 988
19 TraesCS2D01G153000 chr5D 555733905 555734566 661 True 664.000000 664 85.147000 2156 2817 1 chr5D.!!$R1 661

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
937 1276 0.034059 AGAAACGCAGACAGGACCAG 59.966 55.0 0.00 0.00 0.00 4.00 F
1088 1439 0.245539 TGGTGCTACTTGTAGCGGAC 59.754 55.0 22.61 17.17 45.61 4.79 F
1118 1471 0.331278 CAAGGATGGGTAGGGTTGCA 59.669 55.0 0.00 0.00 0.00 4.08 F
1810 2182 0.681733 TCACACTGCTCCTCCTTCAC 59.318 55.0 0.00 0.00 0.00 3.18 F
1811 2183 0.683973 CACACTGCTCCTCCTTCACT 59.316 55.0 0.00 0.00 0.00 3.41 F
1812 2184 0.683973 ACACTGCTCCTCCTTCACTG 59.316 55.0 0.00 0.00 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2243 2635 0.179073 ACCTATGCCGTGATGAGTGC 60.179 55.000 0.00 0.00 0.00 4.40 R
2668 3192 0.524392 CCAGCGATGTCGAGTCACTC 60.524 60.000 6.60 0.00 43.02 3.51 R
2685 3209 4.608774 ACGGTCCTCACGGTCCCA 62.609 66.667 0.00 0.00 35.34 4.37 R
3161 6313 0.719015 AGTTCCTCCTGATCTCCCCA 59.281 55.000 0.00 0.00 0.00 4.96 R
3248 6407 1.956477 ACGAATGCAGCAAAAGAACCT 59.044 42.857 0.00 0.00 0.00 3.50 R
3533 6700 2.423577 AGTGTCACTATTTTGGGACGC 58.576 47.619 2.87 2.64 40.18 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.938832 AGTGTTTGTGCTTGTACTGTGTTA 59.061 37.500 0.00 0.00 0.00 2.41
40 41 8.739461 GTTTGTGCTTGTACTGTGTTATAAAAC 58.261 33.333 0.00 0.00 36.07 2.43
44 45 8.739461 GTGCTTGTACTGTGTTATAAAACAAAC 58.261 33.333 9.74 10.78 46.84 2.93
46 47 8.132995 GCTTGTACTGTGTTATAAAACAAACCT 58.867 33.333 9.74 0.00 46.84 3.50
63 64 1.224592 CTTGAATAGGCCGCCACCT 59.775 57.895 13.15 0.00 44.31 4.00
71 72 2.052782 AGGCCGCCACCTATTTAAAG 57.947 50.000 13.15 0.00 38.67 1.85
94 95 2.924290 GCTTCCATCACGTCTGTAACTC 59.076 50.000 0.00 0.00 0.00 3.01
129 130 0.313672 AACTAACGGTTGGTACGCGA 59.686 50.000 15.93 0.00 36.70 5.87
130 131 0.527565 ACTAACGGTTGGTACGCGAT 59.472 50.000 15.93 0.00 34.00 4.58
131 132 0.918619 CTAACGGTTGGTACGCGATG 59.081 55.000 15.93 0.00 34.00 3.84
132 133 1.077645 TAACGGTTGGTACGCGATGC 61.078 55.000 15.93 1.31 34.00 3.91
133 134 2.811747 CGGTTGGTACGCGATGCA 60.812 61.111 15.93 0.00 0.00 3.96
134 135 2.798501 CGGTTGGTACGCGATGCAG 61.799 63.158 15.93 0.00 0.00 4.41
135 136 1.740296 GGTTGGTACGCGATGCAGT 60.740 57.895 15.93 0.00 0.00 4.40
186 199 9.667989 CATCGACAATTTAAGCAATATCATTCA 57.332 29.630 0.00 0.00 0.00 2.57
189 202 8.474577 CGACAATTTAAGCAATATCATTCAAGC 58.525 33.333 0.00 0.00 0.00 4.01
194 207 5.511234 AAGCAATATCATTCAAGCTGGTC 57.489 39.130 0.00 0.00 31.88 4.02
275 288 5.630121 TGGTCCATTGACTACACATCTTTT 58.370 37.500 0.00 0.00 41.47 2.27
278 291 6.016276 GGTCCATTGACTACACATCTTTTTGT 60.016 38.462 0.00 0.00 41.47 2.83
317 340 8.836268 ACAACAAATAGACATCATGCAAAAAT 57.164 26.923 0.00 0.00 0.00 1.82
318 341 9.926158 ACAACAAATAGACATCATGCAAAAATA 57.074 25.926 0.00 0.00 0.00 1.40
338 361 9.807649 AAAAATAATCAGACAAATGCATACTCC 57.192 29.630 0.00 0.00 0.00 3.85
340 363 7.976135 ATAATCAGACAAATGCATACTCCTC 57.024 36.000 0.00 0.00 0.00 3.71
362 385 6.652481 CCTCACTACACAAGATTCAATTGACT 59.348 38.462 7.89 2.08 0.00 3.41
363 386 7.819415 CCTCACTACACAAGATTCAATTGACTA 59.181 37.037 7.89 0.00 0.00 2.59
364 387 8.534333 TCACTACACAAGATTCAATTGACTAC 57.466 34.615 7.89 2.76 0.00 2.73
365 388 8.147704 TCACTACACAAGATTCAATTGACTACA 58.852 33.333 7.89 0.00 0.00 2.74
366 389 8.223769 CACTACACAAGATTCAATTGACTACAC 58.776 37.037 7.89 0.00 0.00 2.90
367 390 7.931407 ACTACACAAGATTCAATTGACTACACA 59.069 33.333 7.89 0.00 0.00 3.72
368 391 7.750229 ACACAAGATTCAATTGACTACACAT 57.250 32.000 7.89 0.00 0.00 3.21
369 392 7.587629 ACACAAGATTCAATTGACTACACATG 58.412 34.615 7.89 4.60 0.00 3.21
370 393 7.445096 ACACAAGATTCAATTGACTACACATGA 59.555 33.333 7.89 0.00 0.00 3.07
371 394 8.456471 CACAAGATTCAATTGACTACACATGAT 58.544 33.333 7.89 0.00 0.00 2.45
372 395 9.017509 ACAAGATTCAATTGACTACACATGATT 57.982 29.630 7.89 0.00 0.00 2.57
373 396 9.285770 CAAGATTCAATTGACTACACATGATTG 57.714 33.333 7.89 2.47 0.00 2.67
374 397 8.797350 AGATTCAATTGACTACACATGATTGA 57.203 30.769 7.89 0.00 31.76 2.57
375 398 9.234827 AGATTCAATTGACTACACATGATTGAA 57.765 29.630 7.89 13.88 40.50 2.69
378 401 9.844790 TTCAATTGACTACACATGATTGAATTC 57.155 29.630 7.89 0.00 35.98 2.17
379 402 8.461222 TCAATTGACTACACATGATTGAATTCC 58.539 33.333 3.38 0.00 31.14 3.01
380 403 8.464404 CAATTGACTACACATGATTGAATTCCT 58.536 33.333 0.00 0.00 0.00 3.36
396 420 7.372260 TGAATTCCTTTCTTTTCCCATGAAA 57.628 32.000 2.27 0.00 35.41 2.69
470 509 2.668556 CGATACCCGACGATCATCCTTG 60.669 54.545 0.00 0.00 41.76 3.61
483 522 3.897239 TCATCCTTGTGTGTGGACTTTT 58.103 40.909 0.00 0.00 34.90 2.27
488 555 2.418368 TGTGTGTGGACTTTTGAGCT 57.582 45.000 0.00 0.00 0.00 4.09
491 558 2.032178 GTGTGTGGACTTTTGAGCTCAC 59.968 50.000 18.03 4.07 0.00 3.51
497 564 0.106708 ACTTTTGAGCTCACTGGCGA 59.893 50.000 18.03 0.00 37.29 5.54
499 566 0.179059 TTTTGAGCTCACTGGCGACA 60.179 50.000 18.03 0.00 37.29 4.35
514 581 2.839474 GCGACAGCAAAGAATACACAC 58.161 47.619 0.00 0.00 44.35 3.82
515 582 2.480419 GCGACAGCAAAGAATACACACT 59.520 45.455 0.00 0.00 44.35 3.55
517 584 3.120546 CGACAGCAAAGAATACACACTGG 60.121 47.826 0.00 0.00 0.00 4.00
518 585 4.065088 GACAGCAAAGAATACACACTGGA 58.935 43.478 0.00 0.00 0.00 3.86
519 586 4.067896 ACAGCAAAGAATACACACTGGAG 58.932 43.478 0.00 0.00 0.00 3.86
520 587 4.202357 ACAGCAAAGAATACACACTGGAGA 60.202 41.667 0.00 0.00 0.00 3.71
521 588 4.153117 CAGCAAAGAATACACACTGGAGAC 59.847 45.833 0.00 0.00 0.00 3.36
522 589 4.065088 GCAAAGAATACACACTGGAGACA 58.935 43.478 0.00 0.00 39.59 3.41
523 590 4.697352 GCAAAGAATACACACTGGAGACAT 59.303 41.667 0.00 0.00 41.51 3.06
524 591 5.163814 GCAAAGAATACACACTGGAGACATC 60.164 44.000 0.00 0.00 41.51 3.06
525 592 5.745312 AAGAATACACACTGGAGACATCA 57.255 39.130 0.00 0.00 41.51 3.07
526 593 5.745312 AGAATACACACTGGAGACATCAA 57.255 39.130 0.00 0.00 41.51 2.57
527 594 6.114187 AGAATACACACTGGAGACATCAAA 57.886 37.500 0.00 0.00 41.51 2.69
528 595 6.715280 AGAATACACACTGGAGACATCAAAT 58.285 36.000 0.00 0.00 41.51 2.32
529 596 7.170965 AGAATACACACTGGAGACATCAAATT 58.829 34.615 0.00 0.00 41.51 1.82
530 597 6.992063 ATACACACTGGAGACATCAAATTC 57.008 37.500 0.00 0.00 41.51 2.17
531 598 4.717877 ACACACTGGAGACATCAAATTCA 58.282 39.130 0.00 0.00 41.51 2.57
534 601 4.999950 ACACTGGAGACATCAAATTCAGAC 59.000 41.667 0.00 0.00 41.51 3.51
535 602 4.999311 CACTGGAGACATCAAATTCAGACA 59.001 41.667 0.00 0.00 41.51 3.41
537 604 5.646793 ACTGGAGACATCAAATTCAGACATG 59.353 40.000 0.00 0.00 41.51 3.21
538 605 5.807909 TGGAGACATCAAATTCAGACATGA 58.192 37.500 0.00 0.00 33.40 3.07
539 606 5.645067 TGGAGACATCAAATTCAGACATGAC 59.355 40.000 0.00 0.00 31.88 3.06
550 675 4.050852 TCAGACATGACGATCATCCTTG 57.949 45.455 0.00 0.00 34.28 3.61
575 700 0.877743 GGACTTTTGAGCTCACTGGC 59.122 55.000 18.03 11.42 0.00 4.85
576 701 0.514691 GACTTTTGAGCTCACTGGCG 59.485 55.000 18.03 6.04 37.29 5.69
577 702 1.208614 CTTTTGAGCTCACTGGCGC 59.791 57.895 18.03 0.00 37.29 6.53
578 703 2.192608 CTTTTGAGCTCACTGGCGCC 62.193 60.000 22.73 22.73 37.29 6.53
592 717 2.526120 GCGCCAGCGGAGAATACAC 61.526 63.158 14.63 0.00 40.19 2.90
594 719 1.421410 CGCCAGCGGAGAATACACAC 61.421 60.000 3.61 0.00 35.56 3.82
595 720 0.108138 GCCAGCGGAGAATACACACT 60.108 55.000 0.00 0.00 0.00 3.55
596 721 1.645034 CCAGCGGAGAATACACACTG 58.355 55.000 0.00 0.00 0.00 3.66
598 723 2.353704 CCAGCGGAGAATACACACTGAA 60.354 50.000 0.00 0.00 0.00 3.02
600 725 3.935203 CAGCGGAGAATACACACTGAATT 59.065 43.478 0.00 0.00 0.00 2.17
602 727 4.393062 AGCGGAGAATACACACTGAATTTG 59.607 41.667 0.00 0.00 0.00 2.32
603 728 4.391830 GCGGAGAATACACACTGAATTTGA 59.608 41.667 0.00 0.00 0.00 2.69
604 729 5.106712 GCGGAGAATACACACTGAATTTGAA 60.107 40.000 0.00 0.00 0.00 2.69
605 730 6.567701 GCGGAGAATACACACTGAATTTGAAA 60.568 38.462 0.00 0.00 0.00 2.69
606 731 6.797033 CGGAGAATACACACTGAATTTGAAAC 59.203 38.462 0.00 0.00 0.00 2.78
608 733 8.999431 GGAGAATACACACTGAATTTGAAACTA 58.001 33.333 0.00 0.00 0.00 2.24
706 1014 5.465724 CCGGGAAAGAAAAACCTATCTATCG 59.534 44.000 0.00 0.00 0.00 2.92
894 1232 3.141488 CTGCGGCGTCTAGGGAGT 61.141 66.667 9.37 0.00 0.00 3.85
937 1276 0.034059 AGAAACGCAGACAGGACCAG 59.966 55.000 0.00 0.00 0.00 4.00
984 1324 1.202203 GCGTATAAATGGACGTGCGA 58.798 50.000 1.60 0.00 41.13 5.10
1000 1340 3.123620 GAAGGAGCAGCGTGCCAG 61.124 66.667 6.39 0.00 46.52 4.85
1024 1372 0.843309 TCCACACACCTCAACCACAT 59.157 50.000 0.00 0.00 0.00 3.21
1026 1374 1.476652 CCACACACCTCAACCACATGA 60.477 52.381 0.00 0.00 0.00 3.07
1069 1420 4.021016 GTCTCCTGGATTCTACACACACTT 60.021 45.833 0.00 0.00 0.00 3.16
1072 1423 3.244561 CCTGGATTCTACACACACTTGGT 60.245 47.826 0.00 0.00 0.00 3.67
1084 1435 2.480419 CACACTTGGTGCTACTTGTAGC 59.520 50.000 21.78 21.78 41.36 3.58
1085 1436 1.726791 CACTTGGTGCTACTTGTAGCG 59.273 52.381 22.61 13.22 45.61 4.26
1086 1437 1.337823 ACTTGGTGCTACTTGTAGCGG 60.338 52.381 22.61 14.18 45.61 5.52
1087 1438 0.970640 TTGGTGCTACTTGTAGCGGA 59.029 50.000 22.61 8.14 45.61 5.54
1088 1439 0.245539 TGGTGCTACTTGTAGCGGAC 59.754 55.000 22.61 17.17 45.61 4.79
1094 1445 1.948145 CTACTTGTAGCGGACCGATCT 59.052 52.381 20.50 8.80 0.00 2.75
1118 1471 0.331278 CAAGGATGGGTAGGGTTGCA 59.669 55.000 0.00 0.00 0.00 4.08
1136 1489 1.929836 GCAATCTGGATCTCGTGTGTC 59.070 52.381 0.00 0.00 0.00 3.67
1149 1502 1.766059 TGTGTCCTGCTCCTGGTGT 60.766 57.895 0.00 0.00 0.00 4.16
1330 1685 3.515316 CTTCGTCCAGGTGCGTGGT 62.515 63.158 10.24 0.00 38.88 4.16
1331 1686 3.800685 TTCGTCCAGGTGCGTGGTG 62.801 63.158 10.24 5.51 38.88 4.17
1335 1690 4.015406 CCAGGTGCGTGGTGCCTA 62.015 66.667 2.99 0.00 45.60 3.93
1336 1691 2.031919 CAGGTGCGTGGTGCCTAA 59.968 61.111 0.00 0.00 45.60 2.69
1337 1692 2.032071 AGGTGCGTGGTGCCTAAC 59.968 61.111 0.00 0.00 45.60 2.34
1338 1693 2.032071 GGTGCGTGGTGCCTAACT 59.968 61.111 0.00 0.00 45.60 2.24
1339 1694 2.325082 GGTGCGTGGTGCCTAACTG 61.325 63.158 0.00 0.00 45.60 3.16
1341 1696 1.301401 TGCGTGGTGCCTAACTGTC 60.301 57.895 0.00 0.00 45.60 3.51
1367 1735 6.539649 TCTTTATATGCATGTAAAGCGACC 57.460 37.500 34.02 0.00 39.69 4.79
1388 1759 0.894835 GCACCTGGTTAACATTGGGG 59.105 55.000 8.10 8.15 0.00 4.96
1390 1761 1.892474 CACCTGGTTAACATTGGGGTG 59.108 52.381 8.10 12.58 35.97 4.61
1391 1762 0.894835 CCTGGTTAACATTGGGGTGC 59.105 55.000 8.10 0.00 0.00 5.01
1393 1764 1.214325 GGTTAACATTGGGGTGCGC 59.786 57.895 8.10 0.00 0.00 6.09
1394 1765 1.154112 GTTAACATTGGGGTGCGCG 60.154 57.895 0.00 0.00 0.00 6.86
1395 1766 2.983930 TTAACATTGGGGTGCGCGC 61.984 57.895 27.26 27.26 0.00 6.86
1412 1783 3.506096 CGCATGCAGGGCTGTGAG 61.506 66.667 19.57 0.00 0.00 3.51
1804 2176 1.445238 GCGTCTCACACTGCTCCTC 60.445 63.158 0.00 0.00 0.00 3.71
1805 2177 1.214062 CGTCTCACACTGCTCCTCC 59.786 63.158 0.00 0.00 0.00 4.30
1806 2178 1.247419 CGTCTCACACTGCTCCTCCT 61.247 60.000 0.00 0.00 0.00 3.69
1807 2179 0.972883 GTCTCACACTGCTCCTCCTT 59.027 55.000 0.00 0.00 0.00 3.36
1808 2180 1.067213 GTCTCACACTGCTCCTCCTTC 60.067 57.143 0.00 0.00 0.00 3.46
1809 2181 0.972134 CTCACACTGCTCCTCCTTCA 59.028 55.000 0.00 0.00 0.00 3.02
1810 2182 0.681733 TCACACTGCTCCTCCTTCAC 59.318 55.000 0.00 0.00 0.00 3.18
1811 2183 0.683973 CACACTGCTCCTCCTTCACT 59.316 55.000 0.00 0.00 0.00 3.41
1812 2184 0.683973 ACACTGCTCCTCCTTCACTG 59.316 55.000 0.00 0.00 0.00 3.66
1813 2185 0.972134 CACTGCTCCTCCTTCACTGA 59.028 55.000 0.00 0.00 0.00 3.41
1814 2186 0.972883 ACTGCTCCTCCTTCACTGAC 59.027 55.000 0.00 0.00 0.00 3.51
1851 2234 2.340328 GGATTTTTGGCCCGCTCGT 61.340 57.895 0.00 0.00 0.00 4.18
1852 2235 1.154035 GATTTTTGGCCCGCTCGTG 60.154 57.895 0.00 0.00 0.00 4.35
1853 2236 2.542211 GATTTTTGGCCCGCTCGTGG 62.542 60.000 0.00 0.00 0.00 4.94
2151 2542 0.806868 CCACGACTAACTCCACGCTA 59.193 55.000 0.00 0.00 0.00 4.26
2196 2588 2.820787 ACGAGAGAAACAGGTTCGATCT 59.179 45.455 0.00 0.00 41.52 2.75
2685 3209 1.658686 GGGAGTGACTCGACATCGCT 61.659 60.000 6.50 7.55 39.62 4.93
3011 6163 1.878775 GAACCTGCTCAAGCGCAAT 59.121 52.632 11.47 0.00 45.83 3.56
3119 6271 2.234143 GAGAAGAAGTTTGCCAAGGCT 58.766 47.619 12.96 0.00 42.51 4.58
3161 6313 2.042831 GCTCAAGACCGCTGCCAAT 61.043 57.895 0.00 0.00 0.00 3.16
3197 6349 0.814010 ACTGCAGGGTCGTCAACAAC 60.814 55.000 19.93 0.00 0.00 3.32
3202 6357 1.616865 CAGGGTCGTCAACAACTAGGA 59.383 52.381 0.00 0.00 0.00 2.94
3238 6397 8.581057 TTTGTATTTAACATTGAACGTGCATT 57.419 26.923 0.00 0.00 38.10 3.56
3241 6400 6.932901 ATTTAACATTGAACGTGCATTCAG 57.067 33.333 0.00 0.00 39.68 3.02
3242 6401 2.336554 ACATTGAACGTGCATTCAGC 57.663 45.000 0.00 0.00 39.68 4.26
3244 6403 2.247637 CATTGAACGTGCATTCAGCTG 58.752 47.619 7.63 7.63 45.94 4.24
3245 6404 1.592064 TTGAACGTGCATTCAGCTGA 58.408 45.000 13.74 13.74 45.94 4.26
3246 6405 1.812235 TGAACGTGCATTCAGCTGAT 58.188 45.000 19.04 4.99 45.94 2.90
3247 6406 1.733912 TGAACGTGCATTCAGCTGATC 59.266 47.619 19.04 9.96 45.94 2.92
3248 6407 1.733912 GAACGTGCATTCAGCTGATCA 59.266 47.619 19.04 13.03 45.94 2.92
3267 6426 2.030893 TCAGGTTCTTTTGCTGCATTCG 60.031 45.455 1.84 0.00 0.00 3.34
3366 6529 5.872617 TCGATTAACAGGGTTGTATTCACAG 59.127 40.000 0.00 0.00 36.23 3.66
3394 6557 8.854117 AGGTGATAGATGCCTGAATAAAATTTC 58.146 33.333 0.00 0.00 0.00 2.17
3425 6591 5.451937 CGGCTTATCCAGTCATCTACTTTCA 60.452 44.000 0.00 0.00 35.76 2.69
3427 6593 6.426328 GGCTTATCCAGTCATCTACTTTCATG 59.574 42.308 0.00 0.00 35.76 3.07
3435 6601 3.926527 TCATCTACTTTCATGACGTGCAC 59.073 43.478 6.82 6.82 0.00 4.57
3454 6620 6.432107 GTGCACGTTCAAAAGGTTTAATAGA 58.568 36.000 0.00 0.00 0.00 1.98
3455 6621 6.577427 GTGCACGTTCAAAAGGTTTAATAGAG 59.423 38.462 0.00 0.00 0.00 2.43
3456 6622 6.261381 TGCACGTTCAAAAGGTTTAATAGAGT 59.739 34.615 0.00 0.00 0.00 3.24
3457 6623 6.795593 GCACGTTCAAAAGGTTTAATAGAGTC 59.204 38.462 0.00 0.00 0.00 3.36
3458 6624 7.519328 GCACGTTCAAAAGGTTTAATAGAGTCA 60.519 37.037 0.00 0.00 0.00 3.41
3478 6644 4.275689 GTCATCCAAATATGATTCCGTGCA 59.724 41.667 0.00 0.00 38.13 4.57
3531 6698 5.536161 ACAAATGCAGTTGTGAAATACTCCT 59.464 36.000 29.76 2.10 40.22 3.69
3533 6700 5.633830 ATGCAGTTGTGAAATACTCCTTG 57.366 39.130 0.00 0.00 0.00 3.61
3546 6713 2.711542 ACTCCTTGCGTCCCAAAATAG 58.288 47.619 0.00 0.00 31.94 1.73
3603 6781 6.017400 ACGAAATGAGCAATGTTTTCTGAT 57.983 33.333 0.00 0.00 0.00 2.90
3604 6782 6.449698 ACGAAATGAGCAATGTTTTCTGATT 58.550 32.000 0.00 0.00 0.00 2.57
3606 6784 8.081633 ACGAAATGAGCAATGTTTTCTGATTTA 58.918 29.630 0.00 0.00 0.00 1.40
3607 6785 8.581263 CGAAATGAGCAATGTTTTCTGATTTAG 58.419 33.333 0.00 0.00 0.00 1.85
3608 6786 9.415544 GAAATGAGCAATGTTTTCTGATTTAGT 57.584 29.630 0.00 0.00 0.00 2.24
3609 6787 8.976986 AATGAGCAATGTTTTCTGATTTAGTC 57.023 30.769 0.00 0.00 0.00 2.59
3610 6788 7.750229 TGAGCAATGTTTTCTGATTTAGTCT 57.250 32.000 0.00 0.00 0.00 3.24
3611 6789 8.169977 TGAGCAATGTTTTCTGATTTAGTCTT 57.830 30.769 0.00 0.00 0.00 3.01
3653 6833 3.503800 AGGGGTCCAAGTTTGACTTAC 57.496 47.619 7.01 0.00 36.03 2.34
3654 6834 2.148768 GGGGTCCAAGTTTGACTTACG 58.851 52.381 7.01 0.00 36.03 3.18
3659 6839 2.158726 TCCAAGTTTGACTTACGGGCTT 60.159 45.455 0.00 0.00 36.03 4.35
3759 6939 2.167693 TGGAATAAGGACCTAGTGCACG 59.832 50.000 12.01 0.00 0.00 5.34
3760 6940 2.429610 GGAATAAGGACCTAGTGCACGA 59.570 50.000 12.01 5.11 0.00 4.35
3761 6941 3.491104 GGAATAAGGACCTAGTGCACGAG 60.491 52.174 19.01 19.01 0.00 4.18
3762 6942 2.211250 TAAGGACCTAGTGCACGAGT 57.789 50.000 23.09 16.15 0.00 4.18
3763 6943 0.603569 AAGGACCTAGTGCACGAGTG 59.396 55.000 23.09 17.00 0.00 3.51
3794 6974 1.867233 GATGTGCCCGTTAGTGCATAG 59.133 52.381 0.00 0.00 40.07 2.23
3797 6977 2.289756 TGTGCCCGTTAGTGCATAGAAA 60.290 45.455 0.00 0.00 40.07 2.52
3815 6995 7.254387 GCATAGAAATCATCTTCCGAGCATATC 60.254 40.741 0.00 0.00 39.71 1.63
3821 7001 7.600231 ATCATCTTCCGAGCATATCTCATAT 57.400 36.000 0.00 0.00 41.98 1.78
3822 7002 7.415592 TCATCTTCCGAGCATATCTCATATT 57.584 36.000 0.00 0.00 41.98 1.28
3823 7003 8.525290 TCATCTTCCGAGCATATCTCATATTA 57.475 34.615 0.00 0.00 41.98 0.98
3824 7004 8.409371 TCATCTTCCGAGCATATCTCATATTAC 58.591 37.037 0.00 0.00 41.98 1.89
3825 7005 7.101652 TCTTCCGAGCATATCTCATATTACC 57.898 40.000 0.00 0.00 41.98 2.85
3826 7006 5.500645 TCCGAGCATATCTCATATTACCG 57.499 43.478 0.00 0.00 41.98 4.02
3830 10304 4.759782 AGCATATCTCATATTACCGTGCC 58.240 43.478 0.00 0.00 0.00 5.01
3864 10338 8.937835 TCTCATCATATACTTGAGGGAAATCAA 58.062 33.333 7.98 0.00 37.93 2.57
3897 10371 3.462579 AGGGCAGATTGGATCAGAAGATT 59.537 43.478 0.00 0.00 33.72 2.40
3920 10394 3.814283 CCATAGCTCAAGGAAAGATGCTC 59.186 47.826 0.00 0.00 32.72 4.26
3923 10397 4.405116 AGCTCAAGGAAAGATGCTCTAG 57.595 45.455 0.00 0.00 0.00 2.43
3932 10406 2.380064 AGATGCTCTAGGGAGGTGAG 57.620 55.000 0.00 0.00 39.80 3.51
3934 10408 0.639392 ATGCTCTAGGGAGGTGAGGT 59.361 55.000 0.00 0.00 39.80 3.85
3935 10409 0.413832 TGCTCTAGGGAGGTGAGGTT 59.586 55.000 0.00 0.00 39.80 3.50
3982 10456 1.047801 TCAATCATGCCGCCTAGCTA 58.952 50.000 0.00 0.00 0.00 3.32
4016 10490 4.597032 CCAAAGAGTGGGTGCCAA 57.403 55.556 0.00 0.00 44.64 4.52
4036 10510 4.502950 CCAATCCTGCTAGAAGGCTAGAAG 60.503 50.000 12.63 2.88 46.21 2.85
4038 10512 1.759445 CCTGCTAGAAGGCTAGAAGCA 59.241 52.381 2.98 14.46 45.57 3.91
4039 10513 2.482839 CCTGCTAGAAGGCTAGAAGCAC 60.483 54.545 2.98 0.00 45.57 4.40
4041 10515 2.768527 TGCTAGAAGGCTAGAAGCACAT 59.231 45.455 12.04 0.00 45.71 3.21
4105 10586 1.053424 TACAGTGGTCCACAAGGTCC 58.947 55.000 24.02 0.00 42.71 4.46
4106 10587 1.301716 CAGTGGTCCACAAGGTCCG 60.302 63.158 24.02 0.00 45.01 4.79
4115 10596 0.253044 CACAAGGTCCGGGTCATCAT 59.747 55.000 0.00 0.00 0.00 2.45
4116 10597 0.991920 ACAAGGTCCGGGTCATCATT 59.008 50.000 0.00 0.00 0.00 2.57
4155 10636 0.536915 GGCGTCTCTCCTACCGGTAT 60.537 60.000 16.25 0.00 0.00 2.73
4158 10639 0.960286 GTCTCTCCTACCGGTATGGC 59.040 60.000 16.25 1.36 43.94 4.40
4229 10710 1.782181 GAGAGCCTCGCGAACAAAC 59.218 57.895 11.33 0.91 0.00 2.93
4230 10711 0.667792 GAGAGCCTCGCGAACAAACT 60.668 55.000 11.33 6.23 0.00 2.66
4240 10721 5.119588 CCTCGCGAACAAACTTTTATAGACA 59.880 40.000 11.33 0.00 0.00 3.41
4248 10729 3.646736 ACTTTTATAGACAGTGGGGCC 57.353 47.619 0.00 0.00 0.00 5.80
4249 10730 2.093128 ACTTTTATAGACAGTGGGGCCG 60.093 50.000 0.00 0.00 0.00 6.13
4289 10770 1.587933 GAACGACAGACTCGAGGCCT 61.588 60.000 16.58 3.86 46.14 5.19
4290 10771 0.322277 AACGACAGACTCGAGGCCTA 60.322 55.000 16.58 0.00 46.14 3.93
4295 10776 1.546476 ACAGACTCGAGGCCTAACAAG 59.454 52.381 16.58 3.14 0.00 3.16
4313 10794 3.774766 ACAAGTCTGGCACATACCATCTA 59.225 43.478 0.00 0.00 39.54 1.98
4318 10799 3.515502 TCTGGCACATACCATCTATAGGC 59.484 47.826 0.00 0.00 39.54 3.93
4335 10816 1.063166 GCTCATGCCGCTTTGCTAC 59.937 57.895 0.00 0.00 0.00 3.58
4336 10817 1.723870 CTCATGCCGCTTTGCTACC 59.276 57.895 0.00 0.00 0.00 3.18
4338 10819 0.744414 TCATGCCGCTTTGCTACCTC 60.744 55.000 0.00 0.00 0.00 3.85
4339 10820 1.815421 ATGCCGCTTTGCTACCTCG 60.815 57.895 0.00 0.00 0.00 4.63
4340 10821 2.125673 GCCGCTTTGCTACCTCGA 60.126 61.111 0.00 0.00 0.00 4.04
4343 10824 0.876342 CCGCTTTGCTACCTCGATCC 60.876 60.000 0.00 0.00 0.00 3.36
4345 10826 0.876342 GCTTTGCTACCTCGATCCCG 60.876 60.000 0.00 0.00 37.07 5.14
4366 10848 3.643398 GGAGGGTCCCGCAATAGT 58.357 61.111 14.31 0.00 0.00 2.12
4390 10872 8.031277 AGTTGCCACATAAAAATCTTGATCTTC 58.969 33.333 0.00 0.00 0.00 2.87
4391 10873 7.465353 TGCCACATAAAAATCTTGATCTTCA 57.535 32.000 0.00 0.00 0.00 3.02
4392 10874 7.541162 TGCCACATAAAAATCTTGATCTTCAG 58.459 34.615 0.00 0.00 0.00 3.02
4393 10875 7.177216 TGCCACATAAAAATCTTGATCTTCAGT 59.823 33.333 0.00 0.00 0.00 3.41
4394 10876 7.487189 GCCACATAAAAATCTTGATCTTCAGTG 59.513 37.037 0.00 0.00 0.00 3.66
4395 10877 7.972277 CCACATAAAAATCTTGATCTTCAGTGG 59.028 37.037 0.00 0.00 34.15 4.00
4396 10878 8.733458 CACATAAAAATCTTGATCTTCAGTGGA 58.267 33.333 0.00 0.00 0.00 4.02
4397 10879 9.300681 ACATAAAAATCTTGATCTTCAGTGGAA 57.699 29.630 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.727798 GCACAAACACTCATACGTACGT 59.272 45.455 25.98 25.98 0.00 3.57
2 3 4.210537 ACAAGCACAAACACTCATACGTAC 59.789 41.667 0.00 0.00 0.00 3.67
3 4 4.373527 ACAAGCACAAACACTCATACGTA 58.626 39.130 0.00 0.00 0.00 3.57
5 6 3.878086 ACAAGCACAAACACTCATACG 57.122 42.857 0.00 0.00 0.00 3.06
16 17 7.986562 TGTTTTATAACACAGTACAAGCACAA 58.013 30.769 0.22 0.00 39.29 3.33
44 45 4.204354 ATAGGTGGCGGCCTATTCAAGG 62.204 54.545 21.46 0.00 46.59 3.61
46 47 1.136828 ATAGGTGGCGGCCTATTCAA 58.863 50.000 21.46 1.18 46.59 2.69
47 48 2.848608 ATAGGTGGCGGCCTATTCA 58.151 52.632 21.46 1.93 46.59 2.57
51 52 2.747135 GCTTTAAATAGGTGGCGGCCTA 60.747 50.000 21.46 4.61 44.37 3.93
52 53 2.022238 GCTTTAAATAGGTGGCGGCCT 61.022 52.381 21.46 2.03 42.43 5.19
63 64 3.936453 ACGTGATGGAAGCGCTTTAAATA 59.064 39.130 25.84 8.63 0.00 1.40
68 69 0.320771 AGACGTGATGGAAGCGCTTT 60.321 50.000 25.84 8.59 0.00 3.51
71 72 0.457853 TACAGACGTGATGGAAGCGC 60.458 55.000 0.00 0.00 0.00 5.92
94 95 4.491241 CGTTAGTTCGATCACTACTTCACG 59.509 45.833 0.00 1.66 0.00 4.35
98 99 5.159209 CAACCGTTAGTTCGATCACTACTT 58.841 41.667 0.00 0.00 36.18 2.24
129 130 1.134280 GGGTGCTACATCTCACTGCAT 60.134 52.381 0.00 0.00 36.04 3.96
130 131 0.250234 GGGTGCTACATCTCACTGCA 59.750 55.000 0.00 0.00 33.91 4.41
131 132 0.250234 TGGGTGCTACATCTCACTGC 59.750 55.000 0.00 0.00 33.91 4.40
132 133 1.827344 TCTGGGTGCTACATCTCACTG 59.173 52.381 0.00 0.00 33.91 3.66
133 134 2.238084 TCTGGGTGCTACATCTCACT 57.762 50.000 0.00 0.00 33.91 3.41
134 135 2.697751 AGATCTGGGTGCTACATCTCAC 59.302 50.000 0.00 0.00 0.00 3.51
135 136 3.037851 AGATCTGGGTGCTACATCTCA 57.962 47.619 0.00 0.00 0.00 3.27
186 199 1.407437 GGATTGATCGTGGACCAGCTT 60.407 52.381 0.00 0.00 0.00 3.74
189 202 2.158914 TGATGGATTGATCGTGGACCAG 60.159 50.000 0.00 0.00 0.00 4.00
194 207 3.130280 TGGATGATGGATTGATCGTGG 57.870 47.619 0.00 0.00 0.00 4.94
241 254 6.747414 AGTCAATGGACCACATAGCTTATA 57.253 37.500 0.00 0.00 45.48 0.98
244 257 4.225042 TGTAGTCAATGGACCACATAGCTT 59.775 41.667 0.00 0.00 45.48 3.74
253 266 6.016276 ACAAAAAGATGTGTAGTCAATGGACC 60.016 38.462 0.00 0.00 37.12 4.46
302 316 8.692110 TTGTCTGATTATTTTTGCATGATGTC 57.308 30.769 0.00 0.00 0.00 3.06
317 340 6.763135 GTGAGGAGTATGCATTTGTCTGATTA 59.237 38.462 3.54 0.00 0.00 1.75
318 341 5.587844 GTGAGGAGTATGCATTTGTCTGATT 59.412 40.000 3.54 0.00 0.00 2.57
319 342 5.104610 AGTGAGGAGTATGCATTTGTCTGAT 60.105 40.000 3.54 0.00 0.00 2.90
320 343 4.223700 AGTGAGGAGTATGCATTTGTCTGA 59.776 41.667 3.54 0.00 0.00 3.27
321 344 4.511527 AGTGAGGAGTATGCATTTGTCTG 58.488 43.478 3.54 0.00 0.00 3.51
322 345 4.833478 AGTGAGGAGTATGCATTTGTCT 57.167 40.909 3.54 0.00 0.00 3.41
323 346 5.292101 GTGTAGTGAGGAGTATGCATTTGTC 59.708 44.000 3.54 0.00 0.00 3.18
338 361 7.664082 AGTCAATTGAATCTTGTGTAGTGAG 57.336 36.000 10.35 0.00 0.00 3.51
340 363 8.223769 GTGTAGTCAATTGAATCTTGTGTAGTG 58.776 37.037 12.35 0.00 0.00 2.74
362 385 9.912634 GAAAAGAAAGGAATTCAATCATGTGTA 57.087 29.630 7.93 0.00 40.72 2.90
363 386 7.874528 GGAAAAGAAAGGAATTCAATCATGTGT 59.125 33.333 7.93 0.00 40.72 3.72
364 387 7.332678 GGGAAAAGAAAGGAATTCAATCATGTG 59.667 37.037 7.93 0.00 40.72 3.21
365 388 7.016465 TGGGAAAAGAAAGGAATTCAATCATGT 59.984 33.333 7.93 0.00 40.72 3.21
366 389 7.388437 TGGGAAAAGAAAGGAATTCAATCATG 58.612 34.615 7.93 0.00 40.72 3.07
367 390 7.557875 TGGGAAAAGAAAGGAATTCAATCAT 57.442 32.000 7.93 0.00 40.72 2.45
368 391 6.992664 TGGGAAAAGAAAGGAATTCAATCA 57.007 33.333 7.93 0.00 40.72 2.57
369 392 7.614494 TCATGGGAAAAGAAAGGAATTCAATC 58.386 34.615 7.93 2.22 40.72 2.67
370 393 7.557875 TCATGGGAAAAGAAAGGAATTCAAT 57.442 32.000 7.93 0.00 40.72 2.57
371 394 6.992664 TCATGGGAAAAGAAAGGAATTCAA 57.007 33.333 7.93 0.00 40.72 2.69
372 395 6.992664 TTCATGGGAAAAGAAAGGAATTCA 57.007 33.333 7.93 0.00 40.72 2.57
396 420 3.672241 GCAAACCGACGCCTCATAATTTT 60.672 43.478 0.00 0.00 0.00 1.82
451 476 2.035961 CACAAGGATGATCGTCGGGTAT 59.964 50.000 8.82 0.00 0.00 2.73
470 509 2.032178 GTGAGCTCAAAAGTCCACACAC 59.968 50.000 20.19 0.00 31.59 3.82
483 522 2.653115 CTGTCGCCAGTGAGCTCA 59.347 61.111 13.74 13.74 33.80 4.26
488 555 0.179059 TTCTTTGCTGTCGCCAGTGA 60.179 50.000 0.00 0.00 41.02 3.41
491 558 2.076100 TGTATTCTTTGCTGTCGCCAG 58.924 47.619 0.00 0.00 41.91 4.85
497 564 4.067896 CTCCAGTGTGTATTCTTTGCTGT 58.932 43.478 0.00 0.00 0.00 4.40
499 566 4.202357 TGTCTCCAGTGTGTATTCTTTGCT 60.202 41.667 0.00 0.00 0.00 3.91
503 570 5.745312 TGATGTCTCCAGTGTGTATTCTT 57.255 39.130 0.00 0.00 0.00 2.52
504 571 5.745312 TTGATGTCTCCAGTGTGTATTCT 57.255 39.130 0.00 0.00 0.00 2.40
505 572 6.992063 ATTTGATGTCTCCAGTGTGTATTC 57.008 37.500 0.00 0.00 0.00 1.75
507 574 6.475504 TGAATTTGATGTCTCCAGTGTGTAT 58.524 36.000 0.00 0.00 0.00 2.29
508 575 5.863965 TGAATTTGATGTCTCCAGTGTGTA 58.136 37.500 0.00 0.00 0.00 2.90
510 577 4.999311 TCTGAATTTGATGTCTCCAGTGTG 59.001 41.667 0.00 0.00 0.00 3.82
511 578 4.999950 GTCTGAATTTGATGTCTCCAGTGT 59.000 41.667 0.00 0.00 0.00 3.55
512 579 4.999311 TGTCTGAATTTGATGTCTCCAGTG 59.001 41.667 0.00 0.00 0.00 3.66
513 580 5.233083 TGTCTGAATTTGATGTCTCCAGT 57.767 39.130 0.00 0.00 0.00 4.00
514 581 5.878669 TCATGTCTGAATTTGATGTCTCCAG 59.121 40.000 0.00 0.00 0.00 3.86
515 582 5.645067 GTCATGTCTGAATTTGATGTCTCCA 59.355 40.000 0.00 0.00 31.85 3.86
517 584 5.578336 TCGTCATGTCTGAATTTGATGTCTC 59.422 40.000 0.00 0.00 31.85 3.36
518 585 5.482006 TCGTCATGTCTGAATTTGATGTCT 58.518 37.500 0.00 0.00 31.85 3.41
519 586 5.784750 TCGTCATGTCTGAATTTGATGTC 57.215 39.130 0.00 0.00 31.85 3.06
520 587 5.876460 TGATCGTCATGTCTGAATTTGATGT 59.124 36.000 0.00 0.00 31.85 3.06
521 588 6.354039 TGATCGTCATGTCTGAATTTGATG 57.646 37.500 0.00 0.00 31.85 3.07
522 589 6.204301 GGATGATCGTCATGTCTGAATTTGAT 59.796 38.462 16.65 0.00 37.20 2.57
523 590 5.525012 GGATGATCGTCATGTCTGAATTTGA 59.475 40.000 16.65 0.00 37.20 2.69
524 591 5.526479 AGGATGATCGTCATGTCTGAATTTG 59.474 40.000 16.65 0.00 37.20 2.32
525 592 5.678583 AGGATGATCGTCATGTCTGAATTT 58.321 37.500 16.65 0.00 37.20 1.82
526 593 5.287674 AGGATGATCGTCATGTCTGAATT 57.712 39.130 16.65 0.00 37.20 2.17
527 594 4.952071 AGGATGATCGTCATGTCTGAAT 57.048 40.909 16.65 0.00 37.20 2.57
528 595 4.081476 ACAAGGATGATCGTCATGTCTGAA 60.081 41.667 16.65 0.00 37.20 3.02
529 596 3.448660 ACAAGGATGATCGTCATGTCTGA 59.551 43.478 16.65 0.00 37.20 3.27
530 597 3.554731 CACAAGGATGATCGTCATGTCTG 59.445 47.826 16.65 7.61 37.20 3.51
531 598 3.196469 ACACAAGGATGATCGTCATGTCT 59.804 43.478 16.65 6.23 37.20 3.41
534 601 3.063045 CACACACAAGGATGATCGTCATG 59.937 47.826 16.65 15.66 37.20 3.07
535 602 3.264947 CACACACAAGGATGATCGTCAT 58.735 45.455 16.65 6.78 40.34 3.06
537 604 2.002586 CCACACACAAGGATGATCGTC 58.997 52.381 6.36 6.36 0.00 4.20
538 605 1.623311 TCCACACACAAGGATGATCGT 59.377 47.619 0.00 0.00 0.00 3.73
539 606 2.002586 GTCCACACACAAGGATGATCG 58.997 52.381 0.00 0.00 36.11 3.69
550 675 2.032178 GTGAGCTCAAAAGTCCACACAC 59.968 50.000 20.19 0.00 31.59 3.82
575 700 1.153647 TGTGTATTCTCCGCTGGCG 60.154 57.895 8.08 8.08 39.44 5.69
576 701 0.108138 AGTGTGTATTCTCCGCTGGC 60.108 55.000 0.00 0.00 0.00 4.85
577 702 1.204704 TCAGTGTGTATTCTCCGCTGG 59.795 52.381 0.00 0.00 0.00 4.85
578 703 2.654749 TCAGTGTGTATTCTCCGCTG 57.345 50.000 0.00 0.00 0.00 5.18
582 707 7.875971 AGTTTCAAATTCAGTGTGTATTCTCC 58.124 34.615 0.00 0.00 0.00 3.71
592 717 8.471457 CGACATGTTTTAGTTTCAAATTCAGTG 58.529 33.333 0.00 0.00 0.00 3.66
594 719 7.358352 GGCGACATGTTTTAGTTTCAAATTCAG 60.358 37.037 0.00 0.00 0.00 3.02
595 720 6.419413 GGCGACATGTTTTAGTTTCAAATTCA 59.581 34.615 0.00 0.00 0.00 2.57
596 721 6.419413 TGGCGACATGTTTTAGTTTCAAATTC 59.581 34.615 0.00 0.00 33.40 2.17
598 723 5.837437 TGGCGACATGTTTTAGTTTCAAAT 58.163 33.333 0.00 0.00 33.40 2.32
600 725 4.791411 GCTGGCGACATGTTTTAGTTTCAA 60.791 41.667 0.00 0.00 41.51 2.69
602 727 3.234386 GCTGGCGACATGTTTTAGTTTC 58.766 45.455 0.00 0.00 41.51 2.78
603 728 2.350388 CGCTGGCGACATGTTTTAGTTT 60.350 45.455 9.51 0.00 42.83 2.66
604 729 1.196808 CGCTGGCGACATGTTTTAGTT 59.803 47.619 9.51 0.00 42.83 2.24
605 730 0.796312 CGCTGGCGACATGTTTTAGT 59.204 50.000 9.51 0.00 42.83 2.24
606 731 1.075542 TCGCTGGCGACATGTTTTAG 58.924 50.000 13.78 0.00 44.01 1.85
608 733 4.057224 TCGCTGGCGACATGTTTT 57.943 50.000 13.78 0.00 44.01 2.43
706 1014 2.482296 AATGCTTGCAAGGCAGCGTC 62.482 55.000 27.10 9.58 43.15 5.19
894 1232 1.915228 GGGCAGAGCATGTTCCCTA 59.085 57.895 5.87 0.00 34.19 3.53
937 1276 1.997928 GAAGGAGAATTGGCAGCGGC 61.998 60.000 0.00 0.00 40.13 6.53
940 1280 1.742268 GACTGAAGGAGAATTGGCAGC 59.258 52.381 0.00 0.00 0.00 5.25
996 1336 3.044305 GTGTGTGGAGACGCTGGC 61.044 66.667 0.00 0.00 42.82 4.85
997 1337 2.357517 GGTGTGTGGAGACGCTGG 60.358 66.667 0.00 0.00 42.82 4.85
999 1339 1.399744 TTGAGGTGTGTGGAGACGCT 61.400 55.000 0.00 0.00 42.82 5.07
1000 1340 1.069090 TTGAGGTGTGTGGAGACGC 59.931 57.895 0.00 0.00 42.66 5.19
1001 1341 0.600255 GGTTGAGGTGTGTGGAGACG 60.600 60.000 0.00 0.00 0.00 4.18
1002 1342 0.468226 TGGTTGAGGTGTGTGGAGAC 59.532 55.000 0.00 0.00 0.00 3.36
1003 1343 0.468226 GTGGTTGAGGTGTGTGGAGA 59.532 55.000 0.00 0.00 0.00 3.71
1004 1344 0.180171 TGTGGTTGAGGTGTGTGGAG 59.820 55.000 0.00 0.00 0.00 3.86
1005 1345 0.843309 ATGTGGTTGAGGTGTGTGGA 59.157 50.000 0.00 0.00 0.00 4.02
1006 1346 0.953727 CATGTGGTTGAGGTGTGTGG 59.046 55.000 0.00 0.00 0.00 4.17
1007 1347 1.965935 TCATGTGGTTGAGGTGTGTG 58.034 50.000 0.00 0.00 0.00 3.82
1008 1348 2.092429 AGTTCATGTGGTTGAGGTGTGT 60.092 45.455 0.00 0.00 0.00 3.72
1024 1372 1.597742 GAAGTGGAAGCTGCAGTTCA 58.402 50.000 16.64 1.26 44.38 3.18
1026 1374 0.183492 TGGAAGTGGAAGCTGCAGTT 59.817 50.000 16.64 6.37 33.94 3.16
1057 1405 9.548472 CTACAAGTAGCACCAAGTGTGTGTAGA 62.548 44.444 11.53 0.00 44.40 2.59
1079 1430 0.179026 AGCTAGATCGGTCCGCTACA 60.179 55.000 6.34 0.00 32.03 2.74
1081 1432 0.108019 TGAGCTAGATCGGTCCGCTA 59.892 55.000 6.34 2.31 33.40 4.26
1082 1433 0.752009 TTGAGCTAGATCGGTCCGCT 60.752 55.000 6.34 9.58 35.21 5.52
1083 1434 0.318275 CTTGAGCTAGATCGGTCCGC 60.318 60.000 6.34 0.00 0.00 5.54
1084 1435 0.312416 CCTTGAGCTAGATCGGTCCG 59.688 60.000 4.39 4.39 0.00 4.79
1085 1436 1.693627 TCCTTGAGCTAGATCGGTCC 58.306 55.000 3.11 0.00 0.00 4.46
1086 1437 2.029470 CCATCCTTGAGCTAGATCGGTC 60.029 54.545 3.11 0.00 0.00 4.79
1087 1438 1.967066 CCATCCTTGAGCTAGATCGGT 59.033 52.381 3.11 0.00 0.00 4.69
1088 1439 1.274728 CCCATCCTTGAGCTAGATCGG 59.725 57.143 3.11 0.00 0.00 4.18
1094 1445 1.294068 ACCCTACCCATCCTTGAGCTA 59.706 52.381 0.00 0.00 0.00 3.32
1118 1471 2.167281 CAGGACACACGAGATCCAGATT 59.833 50.000 9.66 0.00 34.73 2.40
1136 1489 1.892819 ATGTCGACACCAGGAGCAGG 61.893 60.000 22.71 0.00 0.00 4.85
1218 1572 1.371022 CTGACGATGATCTCCGCGG 60.371 63.158 22.12 22.12 0.00 6.46
1330 1685 7.109501 TGCATATAAAGAAAGACAGTTAGGCA 58.890 34.615 0.00 0.00 0.00 4.75
1331 1686 7.553881 TGCATATAAAGAAAGACAGTTAGGC 57.446 36.000 0.00 0.00 0.00 3.93
1337 1692 9.443283 GCTTTACATGCATATAAAGAAAGACAG 57.557 33.333 31.95 11.69 39.68 3.51
1338 1693 8.122330 CGCTTTACATGCATATAAAGAAAGACA 58.878 33.333 31.95 2.12 39.68 3.41
1339 1694 8.335356 TCGCTTTACATGCATATAAAGAAAGAC 58.665 33.333 31.95 17.43 39.68 3.01
1341 1696 7.587757 GGTCGCTTTACATGCATATAAAGAAAG 59.412 37.037 31.95 23.04 39.68 2.62
1367 1735 1.545582 CCCAATGTTAACCAGGTGCTG 59.454 52.381 2.48 0.00 0.00 4.41
1373 1741 0.525761 CGCACCCCAATGTTAACCAG 59.474 55.000 2.48 0.00 0.00 4.00
1395 1766 3.506096 CTCACAGCCCTGCATGCG 61.506 66.667 14.09 7.87 0.00 4.73
1396 1767 3.138798 CCTCACAGCCCTGCATGC 61.139 66.667 11.82 11.82 0.00 4.06
1397 1768 3.138798 GCCTCACAGCCCTGCATG 61.139 66.667 0.00 0.00 0.00 4.06
1398 1769 4.790962 CGCCTCACAGCCCTGCAT 62.791 66.667 0.00 0.00 0.00 3.96
1757 2129 4.874977 GCGCCGGAGAGCACTACC 62.875 72.222 10.31 0.00 0.00 3.18
1804 2176 1.004918 GTCCACCCGTCAGTGAAGG 60.005 63.158 17.37 17.37 40.34 3.46
1805 2177 1.372997 CGTCCACCCGTCAGTGAAG 60.373 63.158 0.00 0.00 40.34 3.02
1806 2178 1.829096 TCGTCCACCCGTCAGTGAA 60.829 57.895 0.00 0.00 40.34 3.18
1807 2179 2.203379 TCGTCCACCCGTCAGTGA 60.203 61.111 0.00 0.00 40.34 3.41
1808 2180 2.049433 GTCGTCCACCCGTCAGTG 60.049 66.667 0.00 0.00 37.51 3.66
1809 2181 2.520020 TGTCGTCCACCCGTCAGT 60.520 61.111 0.00 0.00 0.00 3.41
1810 2182 2.049433 GTGTCGTCCACCCGTCAG 60.049 66.667 0.00 0.00 38.18 3.51
1811 2183 3.968568 CGTGTCGTCCACCCGTCA 61.969 66.667 3.10 0.00 41.26 4.35
1812 2184 3.606065 CTCGTGTCGTCCACCCGTC 62.606 68.421 3.10 0.00 41.26 4.79
1813 2185 3.667282 CTCGTGTCGTCCACCCGT 61.667 66.667 3.10 0.00 41.26 5.28
1835 2207 2.635443 CCACGAGCGGGCCAAAAAT 61.635 57.895 4.39 0.00 0.00 1.82
1896 2283 3.750639 TTTTCGGTCCATATTTCGCAC 57.249 42.857 0.00 0.00 0.00 5.34
2151 2542 4.566987 AGTCGCGAATAAAAGGAAAGAGT 58.433 39.130 12.06 0.00 0.00 3.24
2196 2588 0.465705 GGATGGCTCCGTGATTCTCA 59.534 55.000 0.00 0.00 0.00 3.27
2243 2635 0.179073 ACCTATGCCGTGATGAGTGC 60.179 55.000 0.00 0.00 0.00 4.40
2668 3192 0.524392 CCAGCGATGTCGAGTCACTC 60.524 60.000 6.60 0.00 43.02 3.51
2685 3209 4.608774 ACGGTCCTCACGGTCCCA 62.609 66.667 0.00 0.00 35.34 4.37
3119 6271 0.918258 TGGCAGCCATCTTGACCATA 59.082 50.000 11.22 0.00 0.00 2.74
3161 6313 0.719015 AGTTCCTCCTGATCTCCCCA 59.281 55.000 0.00 0.00 0.00 4.96
3197 6349 7.426929 AAATACAAATAGCGAGCAATCCTAG 57.573 36.000 0.00 0.00 0.00 3.02
3202 6357 9.236691 CAATGTTAAATACAAATAGCGAGCAAT 57.763 29.630 0.00 0.00 40.89 3.56
3238 6397 2.816087 GCAAAAGAACCTGATCAGCTGA 59.184 45.455 20.79 20.79 0.00 4.26
3241 6400 2.670509 GCAGCAAAAGAACCTGATCAGC 60.671 50.000 17.76 3.91 0.00 4.26
3242 6401 2.555325 TGCAGCAAAAGAACCTGATCAG 59.445 45.455 16.24 16.24 0.00 2.90
3244 6403 3.863142 ATGCAGCAAAAGAACCTGATC 57.137 42.857 0.00 0.00 0.00 2.92
3245 6404 3.366679 CGAATGCAGCAAAAGAACCTGAT 60.367 43.478 0.00 0.00 0.00 2.90
3246 6405 2.030893 CGAATGCAGCAAAAGAACCTGA 60.031 45.455 0.00 0.00 0.00 3.86
3247 6406 2.287788 ACGAATGCAGCAAAAGAACCTG 60.288 45.455 0.00 0.00 0.00 4.00
3248 6407 1.956477 ACGAATGCAGCAAAAGAACCT 59.044 42.857 0.00 0.00 0.00 3.50
3267 6426 7.995463 TCCAAGTAAACTAACAAAATGCAAC 57.005 32.000 0.00 0.00 0.00 4.17
3366 6529 8.854614 ATTTTATTCAGGCATCTATCACCTAC 57.145 34.615 0.00 0.00 30.84 3.18
3394 6557 3.278574 TGACTGGATAAGCCGAAAATGG 58.721 45.455 0.00 0.00 40.66 3.16
3400 6563 3.833732 AGTAGATGACTGGATAAGCCGA 58.166 45.455 0.00 0.00 40.66 5.54
3435 6601 8.175716 GGATGACTCTATTAAACCTTTTGAACG 58.824 37.037 0.00 0.00 0.00 3.95
3454 6620 4.516698 GCACGGAATCATATTTGGATGACT 59.483 41.667 0.00 0.00 38.64 3.41
3455 6621 4.275689 TGCACGGAATCATATTTGGATGAC 59.724 41.667 0.00 0.00 38.64 3.06
3456 6622 4.459330 TGCACGGAATCATATTTGGATGA 58.541 39.130 0.00 0.00 40.08 2.92
3457 6623 4.834357 TGCACGGAATCATATTTGGATG 57.166 40.909 0.00 0.00 0.00 3.51
3458 6624 6.409524 AAATGCACGGAATCATATTTGGAT 57.590 33.333 0.00 0.00 0.00 3.41
3513 6680 3.667960 CGCAAGGAGTATTTCACAACTGC 60.668 47.826 0.00 0.00 34.57 4.40
3531 6698 2.550606 GTGTCACTATTTTGGGACGCAA 59.449 45.455 0.00 0.00 39.78 4.85
3533 6700 2.423577 AGTGTCACTATTTTGGGACGC 58.576 47.619 2.87 2.64 40.18 5.19
3546 6713 3.000727 CTCCGTCCCAAAATAGTGTCAC 58.999 50.000 0.00 0.00 0.00 3.67
3563 6741 5.505173 TTTCGTATTTAGTACTCCCTCCG 57.495 43.478 0.00 0.00 0.00 4.63
3626 6806 6.800890 AGTCAAACTTGGACCCCTAAATAAT 58.199 36.000 0.00 0.00 35.89 1.28
3653 6833 3.556775 CCATGCATAAAATTTCAAGCCCG 59.443 43.478 0.00 0.00 0.00 6.13
3654 6834 3.313249 GCCATGCATAAAATTTCAAGCCC 59.687 43.478 0.00 0.00 0.00 5.19
3659 6839 4.333095 GCATGTGCCATGCATAAAATTTCA 59.667 37.500 25.80 0.00 41.91 2.69
3765 6945 2.751436 GGGCACATCCGCACATGT 60.751 61.111 0.00 0.00 37.49 3.21
3766 6946 3.879682 CGGGCACATCCGCACATG 61.880 66.667 0.00 0.00 43.71 3.21
3794 6974 6.645700 GAGATATGCTCGGAAGATGATTTC 57.354 41.667 0.00 0.00 40.84 2.17
3815 6995 4.592485 AGAGAAGGCACGGTAATATGAG 57.408 45.455 0.00 0.00 0.00 2.90
3821 7001 3.628008 TGAGATAGAGAAGGCACGGTAA 58.372 45.455 0.00 0.00 0.00 2.85
3822 7002 3.292492 TGAGATAGAGAAGGCACGGTA 57.708 47.619 0.00 0.00 0.00 4.02
3823 7003 2.145397 TGAGATAGAGAAGGCACGGT 57.855 50.000 0.00 0.00 0.00 4.83
3824 7004 2.625314 TGATGAGATAGAGAAGGCACGG 59.375 50.000 0.00 0.00 0.00 4.94
3825 7005 3.998099 TGATGAGATAGAGAAGGCACG 57.002 47.619 0.00 0.00 0.00 5.34
3826 7006 8.292444 AGTATATGATGAGATAGAGAAGGCAC 57.708 38.462 0.00 0.00 0.00 5.01
3873 10347 3.118112 TCTTCTGATCCAATCTGCCCTTC 60.118 47.826 0.00 0.00 0.00 3.46
3897 10371 3.457380 AGCATCTTTCCTTGAGCTATGGA 59.543 43.478 0.00 0.00 0.00 3.41
3920 10394 2.668625 GGTCTAACCTCACCTCCCTAG 58.331 57.143 0.00 0.00 34.73 3.02
3923 10397 1.957765 GCGGTCTAACCTCACCTCCC 61.958 65.000 0.00 0.00 35.66 4.30
3956 10430 2.153645 GGCGGCATGATTGATGATGTA 58.846 47.619 3.07 0.00 33.31 2.29
3958 10432 1.244816 AGGCGGCATGATTGATGATG 58.755 50.000 13.08 0.00 33.31 3.07
3982 10456 0.768622 TGGACAACGGGACAAGGATT 59.231 50.000 0.00 0.00 0.00 3.01
4016 10490 2.632512 GCTTCTAGCCTTCTAGCAGGAT 59.367 50.000 13.15 8.70 41.59 3.24
4036 10510 1.876156 GGCATGCCTCTAACTATGTGC 59.124 52.381 29.98 0.00 0.00 4.57
4038 10512 1.541233 GCGGCATGCCTCTAACTATGT 60.541 52.381 33.07 0.00 37.76 2.29
4039 10513 1.151668 GCGGCATGCCTCTAACTATG 58.848 55.000 33.07 15.86 37.76 2.23
4041 10515 0.539518 TTGCGGCATGCCTCTAACTA 59.460 50.000 33.07 7.41 45.60 2.24
4105 10586 2.026641 AGGATTTGCAATGATGACCCG 58.973 47.619 0.00 0.00 0.00 5.28
4106 10587 4.202151 GGTTAGGATTTGCAATGATGACCC 60.202 45.833 0.00 0.00 0.00 4.46
4115 10596 4.335416 CCTCTTCTGGTTAGGATTTGCAA 58.665 43.478 0.00 0.00 31.64 4.08
4116 10597 3.873801 GCCTCTTCTGGTTAGGATTTGCA 60.874 47.826 0.00 0.00 31.64 4.08
4155 10636 3.916035 TCTTAGAAGCTCAGGATAGCCA 58.084 45.455 0.00 0.00 43.86 4.75
4158 10639 5.757886 CGAGTTCTTAGAAGCTCAGGATAG 58.242 45.833 17.73 4.34 0.00 2.08
4218 10699 5.693104 ACTGTCTATAAAAGTTTGTTCGCGA 59.307 36.000 3.71 3.71 0.00 5.87
4229 10710 2.561569 CGGCCCCACTGTCTATAAAAG 58.438 52.381 0.00 0.00 0.00 2.27
4230 10711 1.407712 GCGGCCCCACTGTCTATAAAA 60.408 52.381 0.00 0.00 0.00 1.52
4277 10758 1.819903 GACTTGTTAGGCCTCGAGTCT 59.180 52.381 25.05 10.88 40.18 3.24
4281 10762 0.895530 CCAGACTTGTTAGGCCTCGA 59.104 55.000 9.68 0.00 0.00 4.04
4282 10763 0.741221 GCCAGACTTGTTAGGCCTCG 60.741 60.000 9.68 0.00 41.25 4.63
4289 10770 4.225042 AGATGGTATGTGCCAGACTTGTTA 59.775 41.667 0.00 0.00 42.47 2.41
4290 10771 2.949177 TGGTATGTGCCAGACTTGTT 57.051 45.000 1.02 0.00 33.97 2.83
4295 10776 4.621747 GCCTATAGATGGTATGTGCCAGAC 60.622 50.000 0.00 0.00 42.47 3.51
4318 10799 0.745845 AGGTAGCAAAGCGGCATGAG 60.746 55.000 1.45 0.00 35.83 2.90
4326 10807 0.876342 CGGGATCGAGGTAGCAAAGC 60.876 60.000 0.00 0.00 39.00 3.51
4366 10848 7.894708 TGAAGATCAAGATTTTTATGTGGCAA 58.105 30.769 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.