Multiple sequence alignment - TraesCS2D01G152600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G152600 chr2D 100.000 2963 0 0 1 2963 95643856 95646818 0.000000e+00 5472
1 TraesCS2D01G152600 chr2D 74.055 794 175 26 1200 1966 95516171 95516960 2.230000e-76 296
2 TraesCS2D01G152600 chr2B 93.233 1655 80 21 679 2321 146992328 146993962 0.000000e+00 2407
3 TraesCS2D01G152600 chr2B 86.576 514 49 14 2456 2963 146994036 146994535 1.550000e-152 549
4 TraesCS2D01G152600 chr2B 94.977 219 9 2 1 219 146991212 146991428 2.830000e-90 342
5 TraesCS2D01G152600 chr2B 73.813 737 156 25 1200 1907 146964251 146964979 1.050000e-64 257
6 TraesCS2D01G152600 chr2B 81.338 284 33 14 374 641 457379737 457380016 2.310000e-51 213
7 TraesCS2D01G152600 chr2B 91.358 81 1 3 2344 2420 146993954 146994032 4.040000e-19 106
8 TraesCS2D01G152600 chr2A 95.207 1377 55 7 641 2009 94157381 94158754 0.000000e+00 2167
9 TraesCS2D01G152600 chr2A 86.942 291 26 8 2027 2307 94158834 94159122 1.710000e-82 316
10 TraesCS2D01G152600 chr2A 94.949 198 7 3 23 219 94156840 94157035 1.030000e-79 307
11 TraesCS2D01G152600 chr7B 78.129 887 163 27 1029 1898 535614415 535615287 4.350000e-148 534
12 TraesCS2D01G152600 chr7D 78.016 887 161 31 1029 1898 506882725 506883594 7.270000e-146 527
13 TraesCS2D01G152600 chr7D 84.342 281 31 3 374 641 184534893 184534613 2.260000e-66 263
14 TraesCS2D01G152600 chr7D 80.224 268 51 2 374 640 616706643 616706909 1.800000e-47 200
15 TraesCS2D01G152600 chr7A 77.752 863 164 26 1050 1898 574753968 574754816 3.410000e-139 505
16 TraesCS2D01G152600 chr7A 84.892 278 29 3 374 638 58205673 58205396 4.870000e-68 268
17 TraesCS2D01G152600 chr7A 93.082 159 11 0 221 379 148540368 148540210 1.780000e-57 233
18 TraesCS2D01G152600 chr7A 92.593 162 12 0 221 382 262513973 262513812 1.780000e-57 233
19 TraesCS2D01G152600 chr7A 91.716 169 13 1 221 388 523513572 523513404 1.780000e-57 233
20 TraesCS2D01G152600 chr7A 90.230 174 15 2 221 394 307325868 307326039 2.970000e-55 226
21 TraesCS2D01G152600 chr1B 78.618 767 146 16 1050 1807 539589484 539588727 2.650000e-135 492
22 TraesCS2D01G152600 chr3A 76.153 759 170 10 1200 1951 628219906 628219152 3.580000e-104 388
23 TraesCS2D01G152600 chr3A 86.282 277 34 3 370 643 676242078 676241803 6.210000e-77 298
24 TraesCS2D01G152600 chr3A 94.268 157 9 0 221 377 62443438 62443282 1.060000e-59 241
25 TraesCS2D01G152600 chr3A 95.652 46 2 0 1157 1202 628220035 628219990 1.140000e-09 75
26 TraesCS2D01G152600 chr3D 75.907 772 173 12 1200 1963 485232117 485231351 1.670000e-102 383
27 TraesCS2D01G152600 chr3D 87.823 271 32 1 374 643 541196007 541195737 1.710000e-82 316
28 TraesCS2D01G152600 chr3D 91.667 168 12 2 221 387 557660134 557660300 6.390000e-57 231
29 TraesCS2D01G152600 chr3D 77.580 281 54 9 365 643 306577574 306577847 8.500000e-36 161
30 TraesCS2D01G152600 chr3D 95.652 46 2 0 1157 1202 485232249 485232204 1.140000e-09 75
31 TraesCS2D01G152600 chrUn 76.115 762 163 17 1200 1950 49139963 49140716 5.990000e-102 381
32 TraesCS2D01G152600 chr5B 85.978 271 37 1 374 643 529577372 529577642 3.740000e-74 289
33 TraesCS2D01G152600 chr5A 85.978 271 36 2 374 643 649571412 649571681 3.740000e-74 289
34 TraesCS2D01G152600 chr5A 93.671 158 10 0 221 378 653722460 653722303 1.370000e-58 237
35 TraesCS2D01G152600 chr5A 82.900 269 34 4 374 641 381692846 381693103 6.390000e-57 231
36 TraesCS2D01G152600 chr5A 90.643 171 14 2 220 388 391640598 391640768 2.970000e-55 226
37 TraesCS2D01G152600 chr6A 92.405 158 12 0 221 378 333512115 333512272 2.970000e-55 226
38 TraesCS2D01G152600 chr6A 82.759 145 20 3 371 511 48627034 48627177 1.120000e-24 124
39 TraesCS2D01G152600 chr4A 83.471 242 39 1 399 639 213030132 213029891 1.070000e-54 224
40 TraesCS2D01G152600 chr4A 95.652 46 2 0 1157 1202 669897956 669898001 1.140000e-09 75
41 TraesCS2D01G152600 chr4B 92.079 101 8 0 543 643 86079349 86079249 3.080000e-30 143


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G152600 chr2D 95643856 95646818 2962 False 5472.0 5472 100.0000 1 2963 1 chr2D.!!$F2 2962
1 TraesCS2D01G152600 chr2D 95516171 95516960 789 False 296.0 296 74.0550 1200 1966 1 chr2D.!!$F1 766
2 TraesCS2D01G152600 chr2B 146991212 146994535 3323 False 851.0 2407 91.5360 1 2963 4 chr2B.!!$F3 2962
3 TraesCS2D01G152600 chr2B 146964251 146964979 728 False 257.0 257 73.8130 1200 1907 1 chr2B.!!$F1 707
4 TraesCS2D01G152600 chr2A 94156840 94159122 2282 False 930.0 2167 92.3660 23 2307 3 chr2A.!!$F1 2284
5 TraesCS2D01G152600 chr7B 535614415 535615287 872 False 534.0 534 78.1290 1029 1898 1 chr7B.!!$F1 869
6 TraesCS2D01G152600 chr7D 506882725 506883594 869 False 527.0 527 78.0160 1029 1898 1 chr7D.!!$F1 869
7 TraesCS2D01G152600 chr7A 574753968 574754816 848 False 505.0 505 77.7520 1050 1898 1 chr7A.!!$F2 848
8 TraesCS2D01G152600 chr1B 539588727 539589484 757 True 492.0 492 78.6180 1050 1807 1 chr1B.!!$R1 757
9 TraesCS2D01G152600 chr3A 628219152 628220035 883 True 231.5 388 85.9025 1157 1951 2 chr3A.!!$R3 794
10 TraesCS2D01G152600 chr3D 485231351 485232249 898 True 229.0 383 85.7795 1157 1963 2 chr3D.!!$R2 806
11 TraesCS2D01G152600 chrUn 49139963 49140716 753 False 381.0 381 76.1150 1200 1950 1 chrUn.!!$F1 750

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
520 673 0.035458 ACCTCGCAAAGAGTCTTGGG 59.965 55.0 6.06 9.18 45.44 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2312 3150 0.175531 GCGTGCAAAAGGCCCAATAT 59.824 50.0 0.0 0.0 43.89 1.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.553064 GACCATTCATCTGTTTACTGATTATCT 57.447 33.333 0.15 0.00 33.14 1.98
53 54 8.590204 TCATGAGTTAGTTGGTAGTATGTTTGA 58.410 33.333 0.00 0.00 0.00 2.69
109 110 5.308497 TCCCTTAATTTACCCGCTGATCATA 59.692 40.000 0.00 0.00 0.00 2.15
213 214 6.727394 AGTTATCCACAAGGGTAGCAATTAA 58.273 36.000 0.00 0.00 34.39 1.40
214 215 6.828785 AGTTATCCACAAGGGTAGCAATTAAG 59.171 38.462 0.00 0.00 34.39 1.85
215 216 4.919774 TCCACAAGGGTAGCAATTAAGA 57.080 40.909 0.00 0.00 38.11 2.10
216 217 4.843728 TCCACAAGGGTAGCAATTAAGAG 58.156 43.478 0.00 0.00 38.11 2.85
217 218 3.378427 CCACAAGGGTAGCAATTAAGAGC 59.622 47.826 0.00 0.00 0.00 4.09
221 222 4.778213 AGGGTAGCAATTAAGAGCATGA 57.222 40.909 0.00 0.00 0.00 3.07
223 224 5.699143 AGGGTAGCAATTAAGAGCATGATT 58.301 37.500 0.00 0.00 0.00 2.57
224 225 6.131961 AGGGTAGCAATTAAGAGCATGATTT 58.868 36.000 0.00 0.00 0.00 2.17
226 227 7.946776 AGGGTAGCAATTAAGAGCATGATTTAT 59.053 33.333 0.00 0.00 0.00 1.40
228 229 7.959651 GGTAGCAATTAAGAGCATGATTTATCG 59.040 37.037 0.00 0.00 0.00 2.92
229 230 6.376978 AGCAATTAAGAGCATGATTTATCGC 58.623 36.000 0.00 0.00 0.00 4.58
230 231 6.206243 AGCAATTAAGAGCATGATTTATCGCT 59.794 34.615 0.00 0.00 37.44 4.93
231 232 6.860023 GCAATTAAGAGCATGATTTATCGCTT 59.140 34.615 0.00 0.00 34.12 4.68
232 233 8.017373 GCAATTAAGAGCATGATTTATCGCTTA 58.983 33.333 0.00 0.00 34.12 3.09
235 236 6.400579 AAGAGCATGATTTATCGCTTATCG 57.599 37.500 0.00 0.00 34.12 2.92
236 237 5.473931 AGAGCATGATTTATCGCTTATCGT 58.526 37.500 0.00 0.00 39.67 3.73
237 238 5.574830 AGAGCATGATTTATCGCTTATCGTC 59.425 40.000 0.00 0.00 39.67 4.20
240 241 5.718824 GCATGATTTATCGCTTATCGTCGTC 60.719 44.000 0.00 0.00 39.67 4.20
241 242 5.104562 TGATTTATCGCTTATCGTCGTCT 57.895 39.130 0.00 0.00 39.67 4.18
242 243 4.909880 TGATTTATCGCTTATCGTCGTCTG 59.090 41.667 0.00 0.00 39.67 3.51
243 244 2.963498 TATCGCTTATCGTCGTCTGG 57.037 50.000 0.00 0.00 39.67 3.86
245 246 1.944676 CGCTTATCGTCGTCTGGCC 60.945 63.158 0.00 0.00 0.00 5.36
246 247 1.944676 GCTTATCGTCGTCTGGCCG 60.945 63.158 0.00 0.00 0.00 6.13
248 249 0.311165 CTTATCGTCGTCTGGCCGAT 59.689 55.000 0.00 0.00 43.19 4.18
249 250 1.534163 CTTATCGTCGTCTGGCCGATA 59.466 52.381 0.00 0.00 41.22 2.92
250 251 1.596603 TATCGTCGTCTGGCCGATAA 58.403 50.000 0.00 0.00 39.74 1.75
251 252 0.311165 ATCGTCGTCTGGCCGATAAG 59.689 55.000 0.00 0.00 39.36 1.73
253 254 0.311165 CGTCGTCTGGCCGATAAGAT 59.689 55.000 0.00 0.00 39.34 2.40
254 255 1.534163 CGTCGTCTGGCCGATAAGATA 59.466 52.381 0.00 0.00 39.34 1.98
255 256 2.031420 CGTCGTCTGGCCGATAAGATAA 60.031 50.000 0.00 0.00 39.34 1.75
257 258 4.557205 GTCGTCTGGCCGATAAGATAAAT 58.443 43.478 0.00 0.00 39.34 1.40
260 261 4.152402 CGTCTGGCCGATAAGATAAATTGG 59.848 45.833 0.00 0.00 0.00 3.16
263 264 3.471495 GCCGATAAGATAAATTGGCCG 57.529 47.619 0.00 0.00 44.94 6.13
265 266 3.689649 GCCGATAAGATAAATTGGCCGAT 59.310 43.478 0.00 0.00 44.94 4.18
266 267 4.873827 GCCGATAAGATAAATTGGCCGATA 59.126 41.667 5.71 0.00 44.94 2.92
267 268 5.353123 GCCGATAAGATAAATTGGCCGATAA 59.647 40.000 5.71 0.00 44.94 1.75
268 269 6.128117 GCCGATAAGATAAATTGGCCGATAAA 60.128 38.462 5.71 0.00 44.94 1.40
269 270 7.415206 GCCGATAAGATAAATTGGCCGATAAAT 60.415 37.037 5.71 2.62 44.94 1.40
270 271 8.122952 CCGATAAGATAAATTGGCCGATAAATC 58.877 37.037 5.71 12.00 0.00 2.17
271 272 8.664798 CGATAAGATAAATTGGCCGATAAATCA 58.335 33.333 21.44 8.94 0.00 2.57
273 274 6.259550 AGATAAATTGGCCGATAAATCAGC 57.740 37.500 21.44 5.29 0.00 4.26
279 280 1.512926 GCCGATAAATCAGCCGATGT 58.487 50.000 0.00 0.00 30.13 3.06
280 281 1.195448 GCCGATAAATCAGCCGATGTG 59.805 52.381 0.00 0.00 30.13 3.21
281 282 1.800586 CCGATAAATCAGCCGATGTGG 59.199 52.381 0.00 0.00 42.50 4.17
301 302 2.998668 CGATAAATCGGCCGATATGC 57.001 50.000 39.08 25.69 45.93 3.14
311 312 1.732259 GGCCGATATGCCGATAAACTG 59.268 52.381 0.00 0.00 42.54 3.16
322 323 4.813296 CCGATAAACTGGCTGATTTACC 57.187 45.455 0.00 0.00 0.00 2.85
323 324 3.564225 CCGATAAACTGGCTGATTTACCC 59.436 47.826 0.00 0.00 0.00 3.69
324 325 3.564225 CGATAAACTGGCTGATTTACCCC 59.436 47.826 0.00 0.00 0.00 4.95
325 326 4.686122 CGATAAACTGGCTGATTTACCCCT 60.686 45.833 0.00 0.00 0.00 4.79
326 327 3.542969 AAACTGGCTGATTTACCCCTT 57.457 42.857 0.00 0.00 0.00 3.95
327 328 4.668138 AAACTGGCTGATTTACCCCTTA 57.332 40.909 0.00 0.00 0.00 2.69
328 329 4.881157 AACTGGCTGATTTACCCCTTAT 57.119 40.909 0.00 0.00 0.00 1.73
329 330 4.439253 ACTGGCTGATTTACCCCTTATC 57.561 45.455 0.00 0.00 0.00 1.75
331 332 4.416848 ACTGGCTGATTTACCCCTTATCAT 59.583 41.667 0.00 0.00 0.00 2.45
333 334 4.082125 GGCTGATTTACCCCTTATCATGG 58.918 47.826 0.00 0.00 0.00 3.66
335 336 4.082125 CTGATTTACCCCTTATCATGGGC 58.918 47.826 0.00 0.00 46.43 5.36
336 337 3.181423 TGATTTACCCCTTATCATGGGCC 60.181 47.826 0.00 0.00 46.43 5.80
338 339 0.104882 TACCCCTTATCATGGGCCGA 60.105 55.000 0.00 0.00 46.43 5.54
339 340 1.073199 CCCCTTATCATGGGCCGAC 59.927 63.158 0.00 0.00 43.26 4.79
340 341 1.073199 CCCTTATCATGGGCCGACC 59.927 63.158 0.00 0.00 37.99 4.79
341 342 1.301716 CCTTATCATGGGCCGACCG 60.302 63.158 0.00 0.00 44.64 4.79
343 344 0.321671 CTTATCATGGGCCGACCGAT 59.678 55.000 0.00 1.35 44.64 4.18
344 345 1.548719 CTTATCATGGGCCGACCGATA 59.451 52.381 0.00 0.27 44.64 2.92
345 346 1.634960 TATCATGGGCCGACCGATAA 58.365 50.000 0.00 0.00 44.64 1.75
346 347 0.321671 ATCATGGGCCGACCGATAAG 59.678 55.000 0.00 0.00 44.64 1.73
349 350 0.106149 ATGGGCCGACCGATAAGTTC 59.894 55.000 0.00 0.00 44.64 3.01
350 351 1.259142 TGGGCCGACCGATAAGTTCA 61.259 55.000 0.00 0.00 44.64 3.18
351 352 0.808847 GGGCCGACCGATAAGTTCAC 60.809 60.000 0.00 0.00 36.48 3.18
352 353 1.143969 GGCCGACCGATAAGTTCACG 61.144 60.000 0.00 0.00 0.00 4.35
353 354 0.179156 GCCGACCGATAAGTTCACGA 60.179 55.000 0.00 0.00 0.00 4.35
354 355 1.535437 GCCGACCGATAAGTTCACGAT 60.535 52.381 0.00 0.00 0.00 3.73
355 356 2.287188 GCCGACCGATAAGTTCACGATA 60.287 50.000 0.00 0.00 0.00 2.92
356 357 3.793129 GCCGACCGATAAGTTCACGATAA 60.793 47.826 0.00 0.00 0.00 1.75
357 358 3.973135 CCGACCGATAAGTTCACGATAAG 59.027 47.826 0.00 0.00 0.00 1.73
358 359 4.497006 CCGACCGATAAGTTCACGATAAGT 60.497 45.833 0.00 0.00 0.00 2.24
389 542 8.962679 TCCTCAACATTGGTTAATAATACAACC 58.037 33.333 0.00 0.00 43.78 3.77
399 552 8.628882 GGTTAATAATACAACCAACAATCAGC 57.371 34.615 0.00 0.00 43.13 4.26
406 559 7.807977 ATACAACCAACAATCAGCTATAAGG 57.192 36.000 0.00 0.00 0.00 2.69
407 560 5.815581 ACAACCAACAATCAGCTATAAGGA 58.184 37.500 0.00 0.00 0.00 3.36
408 561 5.882557 ACAACCAACAATCAGCTATAAGGAG 59.117 40.000 0.00 0.00 0.00 3.69
411 564 5.882557 ACCAACAATCAGCTATAAGGAGTTG 59.117 40.000 0.00 0.00 35.03 3.16
413 566 4.455606 ACAATCAGCTATAAGGAGTTGCC 58.544 43.478 0.00 0.00 0.00 4.52
414 567 4.080356 ACAATCAGCTATAAGGAGTTGCCA 60.080 41.667 0.00 0.00 40.02 4.92
415 568 4.989875 ATCAGCTATAAGGAGTTGCCAT 57.010 40.909 0.00 0.00 40.02 4.40
416 569 4.077300 TCAGCTATAAGGAGTTGCCATG 57.923 45.455 0.00 0.00 40.02 3.66
417 570 3.455910 TCAGCTATAAGGAGTTGCCATGT 59.544 43.478 0.00 0.00 40.02 3.21
419 572 3.455910 AGCTATAAGGAGTTGCCATGTCA 59.544 43.478 0.00 0.00 40.02 3.58
420 573 4.103785 AGCTATAAGGAGTTGCCATGTCAT 59.896 41.667 0.00 0.00 40.02 3.06
424 577 3.834489 AGGAGTTGCCATGTCATCTAG 57.166 47.619 0.00 0.00 40.02 2.43
425 578 3.378512 AGGAGTTGCCATGTCATCTAGA 58.621 45.455 0.00 0.00 40.02 2.43
426 579 3.387374 AGGAGTTGCCATGTCATCTAGAG 59.613 47.826 0.00 0.00 40.02 2.43
427 580 3.133721 GGAGTTGCCATGTCATCTAGAGT 59.866 47.826 0.00 0.00 36.34 3.24
428 581 4.383552 GGAGTTGCCATGTCATCTAGAGTT 60.384 45.833 0.00 0.00 36.34 3.01
429 582 5.163405 GGAGTTGCCATGTCATCTAGAGTTA 60.163 44.000 0.00 0.00 36.34 2.24
430 583 6.299805 AGTTGCCATGTCATCTAGAGTTAA 57.700 37.500 0.00 0.00 0.00 2.01
432 585 5.023533 TGCCATGTCATCTAGAGTTAACC 57.976 43.478 0.88 0.00 0.00 2.85
434 587 5.897250 TGCCATGTCATCTAGAGTTAACCTA 59.103 40.000 0.88 3.11 0.00 3.08
435 588 6.382859 TGCCATGTCATCTAGAGTTAACCTAA 59.617 38.462 0.88 0.00 0.00 2.69
439 592 9.632807 CATGTCATCTAGAGTTAACCTAATAGC 57.367 37.037 0.88 0.00 0.00 2.97
440 593 8.179509 TGTCATCTAGAGTTAACCTAATAGCC 57.820 38.462 0.88 0.00 0.00 3.93
442 595 6.433404 TCATCTAGAGTTAACCTAATAGCCGG 59.567 42.308 0.00 0.00 0.00 6.13
443 596 3.747854 AGAGTTAACCTAATAGCCGGC 57.252 47.619 21.89 21.89 0.00 6.13
444 597 3.036091 AGAGTTAACCTAATAGCCGGCA 58.964 45.455 31.54 15.56 0.00 5.69
445 598 3.646637 AGAGTTAACCTAATAGCCGGCAT 59.353 43.478 31.54 17.29 0.00 4.40
446 599 3.740115 AGTTAACCTAATAGCCGGCATG 58.260 45.455 31.54 12.93 0.00 4.06
448 601 4.345837 AGTTAACCTAATAGCCGGCATGTA 59.654 41.667 31.54 13.42 0.00 2.29
450 603 6.211986 AGTTAACCTAATAGCCGGCATGTATA 59.788 38.462 31.54 12.55 0.00 1.47
451 604 5.492855 AACCTAATAGCCGGCATGTATAA 57.507 39.130 31.54 5.91 0.00 0.98
452 605 5.693769 ACCTAATAGCCGGCATGTATAAT 57.306 39.130 31.54 7.63 0.00 1.28
453 606 6.801718 ACCTAATAGCCGGCATGTATAATA 57.198 37.500 31.54 10.00 0.00 0.98
454 607 6.817184 ACCTAATAGCCGGCATGTATAATAG 58.183 40.000 31.54 17.10 0.00 1.73
455 608 6.383147 ACCTAATAGCCGGCATGTATAATAGT 59.617 38.462 31.54 11.27 0.00 2.12
456 609 7.562454 ACCTAATAGCCGGCATGTATAATAGTA 59.438 37.037 31.54 11.85 0.00 1.82
461 614 7.996098 AGCCGGCATGTATAATAGTAAATTT 57.004 32.000 31.54 0.00 0.00 1.82
463 616 9.509956 AGCCGGCATGTATAATAGTAAATTTAA 57.490 29.630 31.54 0.00 0.00 1.52
490 643 9.305925 ACGTGTACTACTTTATTAATAGTTGGC 57.694 33.333 0.00 0.00 31.65 4.52
491 644 8.758715 CGTGTACTACTTTATTAATAGTTGGCC 58.241 37.037 0.00 0.00 31.65 5.36
492 645 9.049523 GTGTACTACTTTATTAATAGTTGGCCC 57.950 37.037 0.00 0.00 31.65 5.80
493 646 8.770322 TGTACTACTTTATTAATAGTTGGCCCA 58.230 33.333 0.00 0.00 31.65 5.36
494 647 9.049523 GTACTACTTTATTAATAGTTGGCCCAC 57.950 37.037 0.00 0.00 31.65 4.61
495 648 7.058525 ACTACTTTATTAATAGTTGGCCCACC 58.941 38.462 2.72 0.00 0.00 4.61
496 649 6.087276 ACTTTATTAATAGTTGGCCCACCT 57.913 37.500 2.72 0.00 36.63 4.00
497 650 6.499436 ACTTTATTAATAGTTGGCCCACCTT 58.501 36.000 2.72 0.60 36.63 3.50
498 651 7.645002 ACTTTATTAATAGTTGGCCCACCTTA 58.355 34.615 2.72 0.00 36.63 2.69
499 652 7.558807 ACTTTATTAATAGTTGGCCCACCTTAC 59.441 37.037 2.72 0.00 36.63 2.34
500 653 4.931027 TTAATAGTTGGCCCACCTTACA 57.069 40.909 2.72 0.00 36.63 2.41
501 654 3.818295 AATAGTTGGCCCACCTTACAA 57.182 42.857 2.72 0.00 36.63 2.41
502 655 2.572209 TAGTTGGCCCACCTTACAAC 57.428 50.000 2.72 0.00 42.51 3.32
503 656 0.178973 AGTTGGCCCACCTTACAACC 60.179 55.000 2.72 0.00 43.02 3.77
504 657 0.178973 GTTGGCCCACCTTACAACCT 60.179 55.000 0.00 0.00 37.75 3.50
505 658 0.111639 TTGGCCCACCTTACAACCTC 59.888 55.000 0.00 0.00 36.63 3.85
506 659 1.376812 GGCCCACCTTACAACCTCG 60.377 63.158 0.00 0.00 0.00 4.63
507 660 2.038837 GCCCACCTTACAACCTCGC 61.039 63.158 0.00 0.00 0.00 5.03
508 661 1.373435 CCCACCTTACAACCTCGCA 59.627 57.895 0.00 0.00 0.00 5.10
509 662 0.250553 CCCACCTTACAACCTCGCAA 60.251 55.000 0.00 0.00 0.00 4.85
510 663 1.600023 CCACCTTACAACCTCGCAAA 58.400 50.000 0.00 0.00 0.00 3.68
511 664 1.535462 CCACCTTACAACCTCGCAAAG 59.465 52.381 0.00 0.00 0.00 2.77
512 665 2.489971 CACCTTACAACCTCGCAAAGA 58.510 47.619 0.00 0.00 0.00 2.52
513 666 2.480419 CACCTTACAACCTCGCAAAGAG 59.520 50.000 0.00 0.00 46.44 2.85
514 667 2.104281 ACCTTACAACCTCGCAAAGAGT 59.896 45.455 0.00 0.00 45.44 3.24
515 668 2.737252 CCTTACAACCTCGCAAAGAGTC 59.263 50.000 0.00 0.00 45.44 3.36
516 669 3.555168 CCTTACAACCTCGCAAAGAGTCT 60.555 47.826 0.00 0.00 45.44 3.24
517 670 2.622064 ACAACCTCGCAAAGAGTCTT 57.378 45.000 0.00 0.00 45.44 3.01
518 671 2.213499 ACAACCTCGCAAAGAGTCTTG 58.787 47.619 6.06 2.23 45.44 3.02
519 672 1.532868 CAACCTCGCAAAGAGTCTTGG 59.467 52.381 6.06 4.21 45.44 3.61
520 673 0.035458 ACCTCGCAAAGAGTCTTGGG 59.965 55.000 6.06 9.18 45.44 4.12
521 674 1.301677 CCTCGCAAAGAGTCTTGGGC 61.302 60.000 16.14 16.14 45.44 5.36
522 675 1.301677 CTCGCAAAGAGTCTTGGGCC 61.302 60.000 18.84 0.00 41.99 5.80
523 676 1.302832 CGCAAAGAGTCTTGGGCCT 60.303 57.895 18.84 0.00 33.21 5.19
524 677 0.890996 CGCAAAGAGTCTTGGGCCTT 60.891 55.000 18.84 0.00 33.21 4.35
525 678 0.600057 GCAAAGAGTCTTGGGCCTTG 59.400 55.000 15.51 6.99 0.00 3.61
526 679 1.986882 CAAAGAGTCTTGGGCCTTGT 58.013 50.000 6.06 0.00 0.00 3.16
527 680 1.610522 CAAAGAGTCTTGGGCCTTGTG 59.389 52.381 6.06 0.00 0.00 3.33
528 681 0.846693 AAGAGTCTTGGGCCTTGTGT 59.153 50.000 4.10 0.00 0.00 3.72
529 682 0.846693 AGAGTCTTGGGCCTTGTGTT 59.153 50.000 4.53 0.00 0.00 3.32
530 683 0.954452 GAGTCTTGGGCCTTGTGTTG 59.046 55.000 4.53 0.00 0.00 3.33
531 684 1.109323 AGTCTTGGGCCTTGTGTTGC 61.109 55.000 4.53 0.00 0.00 4.17
532 685 1.076412 TCTTGGGCCTTGTGTTGCA 60.076 52.632 4.53 0.00 0.00 4.08
533 686 1.108727 TCTTGGGCCTTGTGTTGCAG 61.109 55.000 4.53 0.00 0.00 4.41
534 687 2.704342 CTTGGGCCTTGTGTTGCAGC 62.704 60.000 4.53 0.00 0.00 5.25
535 688 2.914097 GGGCCTTGTGTTGCAGCT 60.914 61.111 0.84 0.00 0.00 4.24
536 689 2.337532 GGCCTTGTGTTGCAGCTG 59.662 61.111 10.11 10.11 0.00 4.24
537 690 2.337532 GCCTTGTGTTGCAGCTGG 59.662 61.111 17.12 0.00 0.00 4.85
538 691 2.337532 CCTTGTGTTGCAGCTGGC 59.662 61.111 17.12 8.54 45.13 4.85
539 692 2.198287 CCTTGTGTTGCAGCTGGCT 61.198 57.895 17.12 0.00 45.15 4.75
540 693 0.890542 CCTTGTGTTGCAGCTGGCTA 60.891 55.000 17.12 1.92 45.15 3.93
541 694 0.239347 CTTGTGTTGCAGCTGGCTAC 59.761 55.000 17.12 14.51 46.54 3.58
542 695 0.179020 TTGTGTTGCAGCTGGCTACT 60.179 50.000 17.12 0.00 46.50 2.57
543 696 0.684535 TGTGTTGCAGCTGGCTACTA 59.315 50.000 17.12 6.12 46.50 1.82
544 697 1.338105 TGTGTTGCAGCTGGCTACTAG 60.338 52.381 17.12 0.00 46.50 2.57
545 698 0.976641 TGTTGCAGCTGGCTACTAGT 59.023 50.000 17.12 0.00 46.50 2.57
546 699 1.338105 TGTTGCAGCTGGCTACTAGTG 60.338 52.381 17.12 0.00 46.50 2.74
547 700 1.066858 GTTGCAGCTGGCTACTAGTGA 60.067 52.381 17.12 0.00 43.61 3.41
548 701 1.266178 TGCAGCTGGCTACTAGTGAA 58.734 50.000 17.12 0.00 45.15 3.18
549 702 1.205655 TGCAGCTGGCTACTAGTGAAG 59.794 52.381 17.12 0.00 45.15 3.02
550 703 1.478510 GCAGCTGGCTACTAGTGAAGA 59.521 52.381 17.12 0.00 40.25 2.87
551 704 2.093973 GCAGCTGGCTACTAGTGAAGAA 60.094 50.000 17.12 0.00 40.25 2.52
552 705 3.431486 GCAGCTGGCTACTAGTGAAGAAT 60.431 47.826 17.12 0.00 40.25 2.40
553 706 4.367450 CAGCTGGCTACTAGTGAAGAATC 58.633 47.826 5.57 0.00 0.00 2.52
554 707 3.386402 AGCTGGCTACTAGTGAAGAATCC 59.614 47.826 5.39 0.00 0.00 3.01
555 708 3.797184 GCTGGCTACTAGTGAAGAATCCG 60.797 52.174 5.39 0.00 0.00 4.18
556 709 2.100916 TGGCTACTAGTGAAGAATCCGC 59.899 50.000 5.39 0.00 0.00 5.54
557 710 2.362717 GGCTACTAGTGAAGAATCCGCT 59.637 50.000 5.39 0.00 0.00 5.52
558 711 3.181474 GGCTACTAGTGAAGAATCCGCTT 60.181 47.826 5.39 0.00 0.00 4.68
559 712 4.045783 GCTACTAGTGAAGAATCCGCTTC 58.954 47.826 5.39 0.00 43.53 3.86
560 713 4.202070 GCTACTAGTGAAGAATCCGCTTCT 60.202 45.833 5.39 0.00 46.44 2.85
561 714 4.379339 ACTAGTGAAGAATCCGCTTCTC 57.621 45.455 0.00 0.00 43.60 2.87
562 715 4.020543 ACTAGTGAAGAATCCGCTTCTCT 58.979 43.478 11.76 11.76 43.60 3.10
563 716 3.971245 AGTGAAGAATCCGCTTCTCTT 57.029 42.857 0.00 0.00 43.60 2.85
564 717 3.855858 AGTGAAGAATCCGCTTCTCTTC 58.144 45.455 0.00 4.47 43.60 2.87
565 718 3.513515 AGTGAAGAATCCGCTTCTCTTCT 59.486 43.478 11.21 0.00 43.60 2.85
566 719 3.862845 GTGAAGAATCCGCTTCTCTTCTC 59.137 47.826 11.21 5.34 43.60 2.87
567 720 3.766591 TGAAGAATCCGCTTCTCTTCTCT 59.233 43.478 11.21 0.00 43.60 3.10
568 721 4.142271 TGAAGAATCCGCTTCTCTTCTCTC 60.142 45.833 11.21 2.99 43.60 3.20
569 722 3.631250 AGAATCCGCTTCTCTTCTCTCT 58.369 45.455 0.00 0.00 40.26 3.10
570 723 3.632145 AGAATCCGCTTCTCTTCTCTCTC 59.368 47.826 0.00 0.00 40.26 3.20
571 724 2.799126 TCCGCTTCTCTTCTCTCTCT 57.201 50.000 0.00 0.00 0.00 3.10
572 725 3.080300 TCCGCTTCTCTTCTCTCTCTT 57.920 47.619 0.00 0.00 0.00 2.85
573 726 3.013921 TCCGCTTCTCTTCTCTCTCTTC 58.986 50.000 0.00 0.00 0.00 2.87
574 727 2.099098 CCGCTTCTCTTCTCTCTCTTCC 59.901 54.545 0.00 0.00 0.00 3.46
575 728 2.752354 CGCTTCTCTTCTCTCTCTTCCA 59.248 50.000 0.00 0.00 0.00 3.53
576 729 3.192422 CGCTTCTCTTCTCTCTCTTCCAA 59.808 47.826 0.00 0.00 0.00 3.53
577 730 4.494484 GCTTCTCTTCTCTCTCTTCCAAC 58.506 47.826 0.00 0.00 0.00 3.77
578 731 4.220602 GCTTCTCTTCTCTCTCTTCCAACT 59.779 45.833 0.00 0.00 0.00 3.16
579 732 5.417580 GCTTCTCTTCTCTCTCTTCCAACTA 59.582 44.000 0.00 0.00 0.00 2.24
580 733 6.071616 GCTTCTCTTCTCTCTCTTCCAACTAA 60.072 42.308 0.00 0.00 0.00 2.24
581 734 7.461182 TTCTCTTCTCTCTCTTCCAACTAAG 57.539 40.000 0.00 0.00 0.00 2.18
582 735 5.417580 TCTCTTCTCTCTCTTCCAACTAAGC 59.582 44.000 0.00 0.00 0.00 3.09
583 736 5.080337 TCTTCTCTCTCTTCCAACTAAGCA 58.920 41.667 0.00 0.00 0.00 3.91
584 737 5.540337 TCTTCTCTCTCTTCCAACTAAGCAA 59.460 40.000 0.00 0.00 0.00 3.91
585 738 5.140747 TCTCTCTCTTCCAACTAAGCAAC 57.859 43.478 0.00 0.00 0.00 4.17
586 739 3.914312 TCTCTCTTCCAACTAAGCAACG 58.086 45.455 0.00 0.00 0.00 4.10
587 740 3.572682 TCTCTCTTCCAACTAAGCAACGA 59.427 43.478 0.00 0.00 0.00 3.85
588 741 4.220821 TCTCTCTTCCAACTAAGCAACGAT 59.779 41.667 0.00 0.00 0.00 3.73
589 742 5.417894 TCTCTCTTCCAACTAAGCAACGATA 59.582 40.000 0.00 0.00 0.00 2.92
590 743 6.096987 TCTCTCTTCCAACTAAGCAACGATAT 59.903 38.462 0.00 0.00 0.00 1.63
591 744 7.284716 TCTCTCTTCCAACTAAGCAACGATATA 59.715 37.037 0.00 0.00 0.00 0.86
592 745 7.778083 TCTCTTCCAACTAAGCAACGATATAA 58.222 34.615 0.00 0.00 0.00 0.98
593 746 8.421784 TCTCTTCCAACTAAGCAACGATATAAT 58.578 33.333 0.00 0.00 0.00 1.28
594 747 9.692749 CTCTTCCAACTAAGCAACGATATAATA 57.307 33.333 0.00 0.00 0.00 0.98
620 773 9.813826 ATTTTAATCCTTATAGCCTGCTTATGT 57.186 29.630 0.00 0.00 0.00 2.29
621 774 8.848474 TTTAATCCTTATAGCCTGCTTATGTC 57.152 34.615 0.00 0.00 0.00 3.06
622 775 6.439636 AATCCTTATAGCCTGCTTATGTCA 57.560 37.500 0.00 0.00 0.00 3.58
623 776 6.633325 ATCCTTATAGCCTGCTTATGTCAT 57.367 37.500 0.00 0.00 0.00 3.06
624 777 6.042638 TCCTTATAGCCTGCTTATGTCATC 57.957 41.667 0.00 0.00 0.00 2.92
625 778 5.782331 TCCTTATAGCCTGCTTATGTCATCT 59.218 40.000 0.00 0.00 0.00 2.90
626 779 6.270927 TCCTTATAGCCTGCTTATGTCATCTT 59.729 38.462 0.00 0.00 0.00 2.40
627 780 7.454694 TCCTTATAGCCTGCTTATGTCATCTTA 59.545 37.037 0.00 0.00 0.00 2.10
628 781 8.263640 CCTTATAGCCTGCTTATGTCATCTTAT 58.736 37.037 0.00 0.00 0.00 1.73
629 782 9.664332 CTTATAGCCTGCTTATGTCATCTTATT 57.336 33.333 0.00 0.00 0.00 1.40
630 783 7.918536 ATAGCCTGCTTATGTCATCTTATTG 57.081 36.000 0.00 0.00 0.00 1.90
631 784 5.688807 AGCCTGCTTATGTCATCTTATTGT 58.311 37.500 0.00 0.00 0.00 2.71
632 785 6.830912 AGCCTGCTTATGTCATCTTATTGTA 58.169 36.000 0.00 0.00 0.00 2.41
633 786 6.708054 AGCCTGCTTATGTCATCTTATTGTAC 59.292 38.462 0.00 0.00 0.00 2.90
634 787 6.708054 GCCTGCTTATGTCATCTTATTGTACT 59.292 38.462 0.00 0.00 0.00 2.73
635 788 7.227512 GCCTGCTTATGTCATCTTATTGTACTT 59.772 37.037 0.00 0.00 0.00 2.24
636 789 8.554528 CCTGCTTATGTCATCTTATTGTACTTG 58.445 37.037 0.00 0.00 0.00 3.16
637 790 7.919690 TGCTTATGTCATCTTATTGTACTTGC 58.080 34.615 0.00 0.00 0.00 4.01
638 791 7.770433 TGCTTATGTCATCTTATTGTACTTGCT 59.230 33.333 0.00 0.00 0.00 3.91
639 792 8.279103 GCTTATGTCATCTTATTGTACTTGCTC 58.721 37.037 0.00 0.00 0.00 4.26
640 793 9.539825 CTTATGTCATCTTATTGTACTTGCTCT 57.460 33.333 0.00 0.00 0.00 4.09
643 796 8.703604 TGTCATCTTATTGTACTTGCTCTAAC 57.296 34.615 0.00 0.00 0.00 2.34
644 797 8.311109 TGTCATCTTATTGTACTTGCTCTAACA 58.689 33.333 0.00 0.00 0.00 2.41
645 798 9.151471 GTCATCTTATTGTACTTGCTCTAACAA 57.849 33.333 0.00 0.00 36.37 2.83
659 812 4.813697 GCTCTAACAAGGTTGGAGATCATC 59.186 45.833 21.71 4.58 0.00 2.92
674 827 5.222007 GGAGATCATCCCACCAGATAACATT 60.222 44.000 0.00 0.00 43.01 2.71
677 830 7.628234 AGATCATCCCACCAGATAACATTATC 58.372 38.462 3.80 3.80 39.81 1.75
724 1344 0.037877 AGCAAGTTCATGAGCAGCCT 59.962 50.000 18.57 6.69 0.00 4.58
725 1345 1.280133 AGCAAGTTCATGAGCAGCCTA 59.720 47.619 18.57 0.00 0.00 3.93
726 1346 2.092538 AGCAAGTTCATGAGCAGCCTAT 60.093 45.455 18.57 3.42 0.00 2.57
883 1505 9.347934 CATGTTCTACGTATGGAATATCTCTTC 57.652 37.037 0.00 0.00 26.72 2.87
975 1598 1.482593 CATCTCCCCCTACACTCACAC 59.517 57.143 0.00 0.00 0.00 3.82
981 1604 0.038526 CCCTACACTCACACGTCCAC 60.039 60.000 0.00 0.00 0.00 4.02
986 1609 2.134287 ACTCACACGTCCACCAGCT 61.134 57.895 0.00 0.00 0.00 4.24
987 1610 0.826256 ACTCACACGTCCACCAGCTA 60.826 55.000 0.00 0.00 0.00 3.32
1002 1630 3.580458 ACCAGCTATAACTAGGAGCCATG 59.420 47.826 0.00 0.00 36.87 3.66
1003 1631 3.055530 CCAGCTATAACTAGGAGCCATGG 60.056 52.174 7.63 7.63 36.87 3.66
1004 1632 2.569404 AGCTATAACTAGGAGCCATGGC 59.431 50.000 30.12 30.12 36.87 4.40
1046 1674 1.070275 CATGCGCCATGCTCCTAGA 59.930 57.895 4.18 0.00 46.63 2.43
1485 2210 2.284258 ACGCTCCTCTTCCTGCCT 60.284 61.111 0.00 0.00 0.00 4.75
1557 2282 3.723235 CTCCGCCGAGGACATGGTG 62.723 68.421 0.00 0.00 45.98 4.17
1985 2751 2.064762 GGCAATGCACATACGCAAAAA 58.935 42.857 7.79 0.00 46.87 1.94
2004 2770 7.407337 GCAAAAACTACTACTATTTGATCCCG 58.593 38.462 0.00 0.00 33.86 5.14
2010 2785 7.844009 ACTACTACTATTTGATCCCGTTTTCA 58.156 34.615 0.00 0.00 0.00 2.69
2024 2799 5.360144 TCCCGTTTTCAATTGGTTGTAAAGA 59.640 36.000 5.42 0.00 35.95 2.52
2025 2800 6.043411 CCCGTTTTCAATTGGTTGTAAAGAA 58.957 36.000 5.42 0.00 35.95 2.52
2035 2863 4.787551 TGGTTGTAAAGAACATCTGTGGT 58.212 39.130 0.00 0.00 38.10 4.16
2050 2878 2.088423 TGTGGTGTTTTCTTTGCTCGT 58.912 42.857 0.00 0.00 0.00 4.18
2077 2905 3.665745 TTTTTGAAGGGAAGATGCTGC 57.334 42.857 0.00 0.00 0.00 5.25
2235 3070 5.599656 AGATGTTTCACATATCCAATTGGGG 59.400 40.000 24.29 13.51 39.27 4.96
2291 3129 6.870971 TGCTCCAAACTTACGTTTCTTAAT 57.129 33.333 0.00 0.00 41.23 1.40
2297 3135 9.729281 TCCAAACTTACGTTTCTTAATAGGAAT 57.271 29.630 0.00 0.00 41.23 3.01
2318 3156 8.645110 AGGAATGCCAAGAAATTTCTATATTGG 58.355 33.333 23.74 23.74 36.28 3.16
2319 3157 7.874528 GGAATGCCAAGAAATTTCTATATTGGG 59.125 37.037 26.80 19.05 36.28 4.12
2320 3158 6.160576 TGCCAAGAAATTTCTATATTGGGC 57.839 37.500 26.80 24.81 36.28 5.36
2321 3159 5.070313 TGCCAAGAAATTTCTATATTGGGCC 59.930 40.000 26.80 16.96 36.28 5.80
2322 3160 5.305386 GCCAAGAAATTTCTATATTGGGCCT 59.695 40.000 26.80 7.17 36.28 5.19
2323 3161 6.183361 GCCAAGAAATTTCTATATTGGGCCTT 60.183 38.462 26.80 6.74 36.28 4.35
2324 3162 7.635750 GCCAAGAAATTTCTATATTGGGCCTTT 60.636 37.037 26.80 6.58 36.28 3.11
2325 3163 8.267183 CCAAGAAATTTCTATATTGGGCCTTTT 58.733 33.333 20.76 0.00 36.28 2.27
2326 3164 9.101655 CAAGAAATTTCTATATTGGGCCTTTTG 57.898 33.333 20.76 6.73 36.28 2.44
2327 3165 7.275183 AGAAATTTCTATATTGGGCCTTTTGC 58.725 34.615 19.17 0.00 35.34 3.68
2328 3166 6.558488 AATTTCTATATTGGGCCTTTTGCA 57.442 33.333 4.53 0.00 43.89 4.08
2329 3167 5.337578 TTTCTATATTGGGCCTTTTGCAC 57.662 39.130 4.53 0.00 46.61 4.57
2334 3172 3.910490 GGGCCTTTTGCACGCACA 61.910 61.111 0.84 0.00 43.89 4.57
2335 3173 2.355009 GGCCTTTTGCACGCACAG 60.355 61.111 0.00 0.00 43.89 3.66
2336 3174 2.412937 GCCTTTTGCACGCACAGT 59.587 55.556 0.00 0.00 40.77 3.55
2344 3182 4.063529 CACGCACAGTGGTGGATT 57.936 55.556 1.84 0.00 46.77 3.01
2345 3183 1.575922 CACGCACAGTGGTGGATTG 59.424 57.895 1.84 0.00 46.77 2.67
2346 3184 1.148273 ACGCACAGTGGTGGATTGT 59.852 52.632 1.84 0.00 45.38 2.71
2347 3185 0.394938 ACGCACAGTGGTGGATTGTA 59.605 50.000 1.84 0.00 45.38 2.41
2348 3186 1.003118 ACGCACAGTGGTGGATTGTAT 59.997 47.619 1.84 0.00 45.38 2.29
2349 3187 1.398041 CGCACAGTGGTGGATTGTATG 59.602 52.381 1.84 0.00 45.38 2.39
2415 3257 3.008594 TGCCAAAAGAGACCTTCGGATTA 59.991 43.478 0.00 0.00 30.42 1.75
2420 3262 1.136500 AGAGACCTTCGGATTAACGCC 59.864 52.381 0.00 0.00 0.00 5.68
2421 3263 1.136500 GAGACCTTCGGATTAACGCCT 59.864 52.381 0.00 0.00 0.00 5.52
2422 3264 1.134788 AGACCTTCGGATTAACGCCTG 60.135 52.381 0.00 0.00 0.00 4.85
2423 3265 0.743345 ACCTTCGGATTAACGCCTGC 60.743 55.000 0.00 0.00 0.00 4.85
2424 3266 1.636340 CTTCGGATTAACGCCTGCG 59.364 57.895 10.40 10.40 46.03 5.18
2439 3281 3.017323 GCGTGCGCAGATGCTATT 58.983 55.556 12.22 0.00 41.49 1.73
2440 3282 1.353103 GCGTGCGCAGATGCTATTT 59.647 52.632 12.22 0.00 41.49 1.40
2441 3283 0.655626 GCGTGCGCAGATGCTATTTC 60.656 55.000 12.22 0.00 41.49 2.17
2442 3284 0.652071 CGTGCGCAGATGCTATTTCA 59.348 50.000 12.22 0.00 39.32 2.69
2443 3285 1.593070 CGTGCGCAGATGCTATTTCAC 60.593 52.381 12.22 0.00 39.32 3.18
2444 3286 1.398041 GTGCGCAGATGCTATTTCACA 59.602 47.619 12.22 0.00 39.32 3.58
2445 3287 1.398041 TGCGCAGATGCTATTTCACAC 59.602 47.619 5.66 0.00 39.32 3.82
2446 3288 1.667724 GCGCAGATGCTATTTCACACT 59.332 47.619 0.30 0.00 39.32 3.55
2447 3289 2.286067 GCGCAGATGCTATTTCACACTC 60.286 50.000 0.30 0.00 39.32 3.51
2448 3290 2.034254 CGCAGATGCTATTTCACACTCG 60.034 50.000 2.95 0.00 39.32 4.18
2449 3291 2.286067 GCAGATGCTATTTCACACTCGC 60.286 50.000 0.00 0.00 38.21 5.03
2450 3292 2.034254 CAGATGCTATTTCACACTCGCG 60.034 50.000 0.00 0.00 0.00 5.87
2451 3293 2.159240 AGATGCTATTTCACACTCGCGA 60.159 45.455 9.26 9.26 0.00 5.87
2452 3294 1.629013 TGCTATTTCACACTCGCGAG 58.371 50.000 33.45 33.45 0.00 5.03
2453 3295 0.299003 GCTATTTCACACTCGCGAGC 59.701 55.000 34.83 14.83 0.00 5.03
2454 3296 0.567968 CTATTTCACACTCGCGAGCG 59.432 55.000 34.83 28.32 41.35 5.03
2473 3315 1.670791 GTCAAAACGACCTGGGTTCA 58.329 50.000 0.00 0.00 38.85 3.18
2474 3316 2.018515 GTCAAAACGACCTGGGTTCAA 58.981 47.619 0.00 0.00 38.85 2.69
2488 3330 0.169009 GTTCAATGAAGCTCGGCCAC 59.831 55.000 2.24 0.00 0.00 5.01
2508 3350 4.794439 GACGCCGCATTTTGGGCC 62.794 66.667 0.00 0.00 46.73 5.80
2591 3433 9.784531 TCTGTTTCTATTTCTTTTCTGTCTGAT 57.215 29.630 0.00 0.00 0.00 2.90
2759 3602 7.969536 TTTTGTTCACTTTTCCAAACATTGA 57.030 28.000 0.00 0.00 32.16 2.57
2763 3606 7.326454 TGTTCACTTTTCCAAACATTGATCAA 58.674 30.769 11.26 11.26 0.00 2.57
2800 3643 9.658799 TTGTTCAAATTCTAAATTTGTTCACCA 57.341 25.926 19.22 10.50 39.36 4.17
2820 3665 7.661968 TCACCATTTTCAAACATTATTTCCGA 58.338 30.769 0.00 0.00 0.00 4.55
2857 3713 9.819267 AAAATTGCATGAATTGTTTGGAAAAAT 57.181 22.222 0.00 0.00 34.30 1.82
2901 3757 5.335897 GCATCTGCAATGGTTCTTAAAGTCA 60.336 40.000 9.81 0.00 41.59 3.41
2909 3765 1.813178 GTTCTTAAAGTCAGGGGCTGC 59.187 52.381 0.00 0.00 0.00 5.25
2925 3781 1.942657 GCTGCGGATCAAGCATTAGAA 59.057 47.619 14.20 0.00 44.26 2.10
2933 3789 5.699915 CGGATCAAGCATTAGAACTCATCAT 59.300 40.000 0.00 0.00 0.00 2.45
2951 3807 6.136155 TCATCATGTCTACTGGTAAGGATCA 58.864 40.000 0.00 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.590204 TCAAACATACTACCAACTAACTCATGA 58.410 33.333 0.00 0.00 0.00 3.07
109 110 5.238650 CGGTTTTAGAACTGAGTGACCAAAT 59.761 40.000 0.00 0.00 43.47 2.32
213 214 5.473931 ACGATAAGCGATAAATCATGCTCT 58.526 37.500 0.00 0.00 44.57 4.09
214 215 5.497754 CGACGATAAGCGATAAATCATGCTC 60.498 44.000 0.00 0.00 44.57 4.26
215 216 4.324669 CGACGATAAGCGATAAATCATGCT 59.675 41.667 0.00 0.00 44.57 3.79
216 217 4.090066 ACGACGATAAGCGATAAATCATGC 59.910 41.667 0.00 0.00 44.57 4.06
217 218 5.569441 AGACGACGATAAGCGATAAATCATG 59.431 40.000 0.00 0.00 44.57 3.07
221 222 4.227538 CCAGACGACGATAAGCGATAAAT 58.772 43.478 0.00 0.00 44.57 1.40
223 224 2.603892 GCCAGACGACGATAAGCGATAA 60.604 50.000 0.00 0.00 44.57 1.75
224 225 1.069432 GCCAGACGACGATAAGCGATA 60.069 52.381 0.00 0.00 44.57 2.92
226 227 1.063649 GCCAGACGACGATAAGCGA 59.936 57.895 0.00 0.00 44.57 4.93
228 229 1.944676 CGGCCAGACGACGATAAGC 60.945 63.158 2.24 0.00 35.47 3.09
229 230 0.311165 ATCGGCCAGACGACGATAAG 59.689 55.000 2.24 0.00 46.64 1.73
230 231 1.596603 TATCGGCCAGACGACGATAA 58.403 50.000 2.24 0.00 46.64 1.75
231 232 1.534163 CTTATCGGCCAGACGACGATA 59.466 52.381 2.24 3.64 46.64 2.92
232 233 0.311165 CTTATCGGCCAGACGACGAT 59.689 55.000 2.24 5.71 46.64 3.73
233 234 0.745486 TCTTATCGGCCAGACGACGA 60.745 55.000 2.24 0.00 46.64 4.20
234 235 0.311165 ATCTTATCGGCCAGACGACG 59.689 55.000 2.24 0.00 46.64 5.12
235 236 3.637998 TTATCTTATCGGCCAGACGAC 57.362 47.619 2.24 0.00 46.64 4.34
237 238 4.152402 CCAATTTATCTTATCGGCCAGACG 59.848 45.833 2.24 0.00 0.00 4.18
240 241 4.425577 GCCAATTTATCTTATCGGCCAG 57.574 45.455 2.24 0.00 31.76 4.85
243 244 3.071479 TCGGCCAATTTATCTTATCGGC 58.929 45.455 2.24 0.00 37.33 5.54
245 246 8.664798 TGATTTATCGGCCAATTTATCTTATCG 58.335 33.333 2.24 0.00 0.00 2.92
246 247 9.994432 CTGATTTATCGGCCAATTTATCTTATC 57.006 33.333 2.24 0.00 0.00 1.75
261 262 1.800586 CCACATCGGCTGATTTATCGG 59.199 52.381 4.93 0.00 36.26 4.18
282 283 1.593006 GGCATATCGGCCGATTTATCG 59.407 52.381 42.74 26.30 45.40 2.92
301 302 3.564225 GGGTAAATCAGCCAGTTTATCGG 59.436 47.826 0.00 0.00 44.80 4.18
311 312 4.082125 CCATGATAAGGGGTAAATCAGCC 58.918 47.826 0.00 0.00 44.70 4.85
313 314 4.082125 GCCCATGATAAGGGGTAAATCAG 58.918 47.826 0.62 0.00 46.86 2.90
314 315 3.181423 GGCCCATGATAAGGGGTAAATCA 60.181 47.826 0.62 0.00 46.86 2.57
315 316 3.431415 GGCCCATGATAAGGGGTAAATC 58.569 50.000 0.62 0.00 46.86 2.17
319 320 0.104882 TCGGCCCATGATAAGGGGTA 60.105 55.000 0.62 0.00 46.86 3.69
321 322 1.073199 GTCGGCCCATGATAAGGGG 59.927 63.158 0.00 0.00 46.86 4.79
323 324 1.301716 CGGTCGGCCCATGATAAGG 60.302 63.158 0.00 0.00 0.00 2.69
324 325 0.321671 ATCGGTCGGCCCATGATAAG 59.678 55.000 0.00 0.00 0.00 1.73
325 326 1.634960 TATCGGTCGGCCCATGATAA 58.365 50.000 0.00 0.00 0.00 1.75
326 327 1.548719 CTTATCGGTCGGCCCATGATA 59.451 52.381 0.00 0.00 0.00 2.15
327 328 0.321671 CTTATCGGTCGGCCCATGAT 59.678 55.000 0.00 0.00 0.00 2.45
328 329 1.046472 ACTTATCGGTCGGCCCATGA 61.046 55.000 0.00 0.00 0.00 3.07
329 330 0.179056 AACTTATCGGTCGGCCCATG 60.179 55.000 0.00 0.00 0.00 3.66
331 332 1.259142 TGAACTTATCGGTCGGCCCA 61.259 55.000 0.00 0.00 0.00 5.36
333 334 1.143969 CGTGAACTTATCGGTCGGCC 61.144 60.000 0.00 0.00 0.00 6.13
335 336 2.486951 ATCGTGAACTTATCGGTCGG 57.513 50.000 0.00 0.00 0.00 4.79
336 337 4.436847 CACTTATCGTGAACTTATCGGTCG 59.563 45.833 0.00 0.00 46.81 4.79
349 350 7.095481 CCAATGTTGAGGATATCACTTATCGTG 60.095 40.741 4.83 0.00 45.18 4.35
350 351 6.931281 CCAATGTTGAGGATATCACTTATCGT 59.069 38.462 4.83 0.00 37.77 3.73
351 352 6.931281 ACCAATGTTGAGGATATCACTTATCG 59.069 38.462 4.83 0.00 37.77 2.92
352 353 8.682936 AACCAATGTTGAGGATATCACTTATC 57.317 34.615 4.83 0.00 37.77 1.75
363 364 8.962679 GGTTGTATTATTAACCAATGTTGAGGA 58.037 33.333 0.00 0.00 44.48 3.71
381 534 8.052748 TCCTTATAGCTGATTGTTGGTTGTATT 58.947 33.333 0.00 0.00 0.00 1.89
382 535 7.573710 TCCTTATAGCTGATTGTTGGTTGTAT 58.426 34.615 0.00 0.00 0.00 2.29
383 536 6.953101 TCCTTATAGCTGATTGTTGGTTGTA 58.047 36.000 0.00 0.00 0.00 2.41
384 537 5.815581 TCCTTATAGCTGATTGTTGGTTGT 58.184 37.500 0.00 0.00 0.00 3.32
385 538 5.882557 ACTCCTTATAGCTGATTGTTGGTTG 59.117 40.000 0.00 0.00 0.00 3.77
386 539 6.067217 ACTCCTTATAGCTGATTGTTGGTT 57.933 37.500 0.00 0.00 0.00 3.67
387 540 5.700402 ACTCCTTATAGCTGATTGTTGGT 57.300 39.130 0.00 0.00 0.00 3.67
388 541 5.220931 GCAACTCCTTATAGCTGATTGTTGG 60.221 44.000 0.00 0.00 34.63 3.77
389 542 5.220931 GGCAACTCCTTATAGCTGATTGTTG 60.221 44.000 0.00 4.15 36.39 3.33
390 543 4.884164 GGCAACTCCTTATAGCTGATTGTT 59.116 41.667 0.00 0.00 0.00 2.83
391 544 4.080356 TGGCAACTCCTTATAGCTGATTGT 60.080 41.667 0.00 0.00 35.26 2.71
392 545 4.454678 TGGCAACTCCTTATAGCTGATTG 58.545 43.478 0.00 0.00 35.26 2.67
393 546 4.778213 TGGCAACTCCTTATAGCTGATT 57.222 40.909 0.00 0.00 35.26 2.57
394 547 4.103785 ACATGGCAACTCCTTATAGCTGAT 59.896 41.667 0.00 0.00 35.26 2.90
395 548 3.455910 ACATGGCAACTCCTTATAGCTGA 59.544 43.478 0.00 0.00 35.26 4.26
396 549 3.812053 GACATGGCAACTCCTTATAGCTG 59.188 47.826 0.00 0.00 35.26 4.24
397 550 3.455910 TGACATGGCAACTCCTTATAGCT 59.544 43.478 0.00 0.00 35.26 3.32
398 551 3.808728 TGACATGGCAACTCCTTATAGC 58.191 45.455 0.00 0.00 35.26 2.97
399 552 5.862845 AGATGACATGGCAACTCCTTATAG 58.137 41.667 4.70 0.00 35.26 1.31
401 554 4.785346 AGATGACATGGCAACTCCTTAT 57.215 40.909 4.70 0.00 35.26 1.73
402 555 4.962362 TCTAGATGACATGGCAACTCCTTA 59.038 41.667 15.57 0.00 35.26 2.69
403 556 3.776969 TCTAGATGACATGGCAACTCCTT 59.223 43.478 15.57 0.00 35.26 3.36
404 557 3.378512 TCTAGATGACATGGCAACTCCT 58.621 45.455 15.57 7.88 35.26 3.69
406 559 4.399004 ACTCTAGATGACATGGCAACTC 57.601 45.455 15.57 4.06 37.61 3.01
407 560 4.833478 AACTCTAGATGACATGGCAACT 57.167 40.909 16.39 16.39 37.61 3.16
408 561 5.294552 GGTTAACTCTAGATGACATGGCAAC 59.705 44.000 4.70 1.74 0.00 4.17
411 564 5.283457 AGGTTAACTCTAGATGACATGGC 57.717 43.478 5.42 0.00 0.00 4.40
413 566 9.632807 GCTATTAGGTTAACTCTAGATGACATG 57.367 37.037 5.42 0.00 0.00 3.21
414 567 8.808092 GGCTATTAGGTTAACTCTAGATGACAT 58.192 37.037 5.42 0.00 0.00 3.06
415 568 7.040617 CGGCTATTAGGTTAACTCTAGATGACA 60.041 40.741 5.42 0.00 0.00 3.58
416 569 7.306953 CGGCTATTAGGTTAACTCTAGATGAC 58.693 42.308 5.42 1.82 0.00 3.06
417 570 6.433404 CCGGCTATTAGGTTAACTCTAGATGA 59.567 42.308 5.42 0.00 0.00 2.92
419 572 5.185442 GCCGGCTATTAGGTTAACTCTAGAT 59.815 44.000 22.15 5.31 0.00 1.98
420 573 4.522022 GCCGGCTATTAGGTTAACTCTAGA 59.478 45.833 22.15 0.00 0.00 2.43
424 577 3.464111 TGCCGGCTATTAGGTTAACTC 57.536 47.619 29.70 0.00 0.00 3.01
425 578 3.135895 ACATGCCGGCTATTAGGTTAACT 59.864 43.478 29.70 0.00 0.00 2.24
426 579 3.473625 ACATGCCGGCTATTAGGTTAAC 58.526 45.455 29.70 0.00 0.00 2.01
427 580 3.849563 ACATGCCGGCTATTAGGTTAA 57.150 42.857 29.70 2.45 0.00 2.01
428 581 6.608539 TTATACATGCCGGCTATTAGGTTA 57.391 37.500 29.70 3.35 0.00 2.85
429 582 5.492855 TTATACATGCCGGCTATTAGGTT 57.507 39.130 29.70 8.34 0.00 3.50
430 583 5.693769 ATTATACATGCCGGCTATTAGGT 57.306 39.130 29.70 17.55 0.00 3.08
432 585 9.811995 TTTACTATTATACATGCCGGCTATTAG 57.188 33.333 29.70 20.34 0.00 1.73
434 587 9.681062 AATTTACTATTATACATGCCGGCTATT 57.319 29.630 29.70 13.73 0.00 1.73
435 588 9.681062 AAATTTACTATTATACATGCCGGCTAT 57.319 29.630 29.70 19.23 0.00 2.97
465 618 8.758715 GGCCAACTATTAATAAAGTAGTACACG 58.241 37.037 0.00 0.00 0.00 4.49
467 620 8.770322 TGGGCCAACTATTAATAAAGTAGTACA 58.230 33.333 2.13 0.00 0.00 2.90
468 621 9.049523 GTGGGCCAACTATTAATAAAGTAGTAC 57.950 37.037 8.40 0.00 0.00 2.73
470 623 7.058525 GGTGGGCCAACTATTAATAAAGTAGT 58.941 38.462 16.11 0.00 34.09 2.73
471 624 7.287810 AGGTGGGCCAACTATTAATAAAGTAG 58.712 38.462 25.83 0.00 37.19 2.57
472 625 7.215743 AGGTGGGCCAACTATTAATAAAGTA 57.784 36.000 25.83 0.00 37.19 2.24
473 626 6.087276 AGGTGGGCCAACTATTAATAAAGT 57.913 37.500 25.83 0.00 37.19 2.66
474 627 7.558444 TGTAAGGTGGGCCAACTATTAATAAAG 59.442 37.037 27.36 0.00 37.19 1.85
475 628 7.411808 TGTAAGGTGGGCCAACTATTAATAAA 58.588 34.615 27.36 5.11 37.19 1.40
476 629 6.971340 TGTAAGGTGGGCCAACTATTAATAA 58.029 36.000 27.36 3.64 37.19 1.40
477 630 6.578313 TGTAAGGTGGGCCAACTATTAATA 57.422 37.500 27.36 10.49 37.19 0.98
478 631 5.459982 TGTAAGGTGGGCCAACTATTAAT 57.540 39.130 27.36 11.69 37.19 1.40
479 632 4.931027 TGTAAGGTGGGCCAACTATTAA 57.069 40.909 27.36 8.37 37.19 1.40
480 633 4.568169 GGTTGTAAGGTGGGCCAACTATTA 60.568 45.833 27.36 12.19 37.80 0.98
481 634 3.427573 GTTGTAAGGTGGGCCAACTATT 58.572 45.455 27.36 13.41 35.47 1.73
482 635 2.291346 GGTTGTAAGGTGGGCCAACTAT 60.291 50.000 27.36 17.24 37.80 2.12
483 636 1.074244 GGTTGTAAGGTGGGCCAACTA 59.926 52.381 27.36 6.45 37.80 2.24
484 637 0.178973 GGTTGTAAGGTGGGCCAACT 60.179 55.000 21.01 21.01 37.80 3.16
485 638 0.178973 AGGTTGTAAGGTGGGCCAAC 60.179 55.000 15.52 15.52 37.14 3.77
486 639 0.111639 GAGGTTGTAAGGTGGGCCAA 59.888 55.000 8.40 0.00 37.19 4.52
487 640 1.765074 GAGGTTGTAAGGTGGGCCA 59.235 57.895 0.00 0.00 37.19 5.36
488 641 1.376812 CGAGGTTGTAAGGTGGGCC 60.377 63.158 0.00 0.00 0.00 5.80
489 642 2.038837 GCGAGGTTGTAAGGTGGGC 61.039 63.158 0.00 0.00 0.00 5.36
490 643 0.250553 TTGCGAGGTTGTAAGGTGGG 60.251 55.000 0.00 0.00 0.00 4.61
491 644 1.535462 CTTTGCGAGGTTGTAAGGTGG 59.465 52.381 0.00 0.00 0.00 4.61
492 645 2.480419 CTCTTTGCGAGGTTGTAAGGTG 59.520 50.000 0.00 0.00 36.06 4.00
493 646 2.104281 ACTCTTTGCGAGGTTGTAAGGT 59.896 45.455 0.00 0.00 44.33 3.50
494 647 2.737252 GACTCTTTGCGAGGTTGTAAGG 59.263 50.000 0.00 0.00 44.33 2.69
495 648 3.654414 AGACTCTTTGCGAGGTTGTAAG 58.346 45.455 0.00 0.00 44.33 2.34
496 649 3.746045 AGACTCTTTGCGAGGTTGTAA 57.254 42.857 0.00 0.00 44.33 2.41
497 650 3.390135 CAAGACTCTTTGCGAGGTTGTA 58.610 45.455 0.00 0.00 44.33 2.41
498 651 2.213499 CAAGACTCTTTGCGAGGTTGT 58.787 47.619 0.00 0.00 44.33 3.32
499 652 1.532868 CCAAGACTCTTTGCGAGGTTG 59.467 52.381 0.00 0.00 44.33 3.77
500 653 1.543429 CCCAAGACTCTTTGCGAGGTT 60.543 52.381 0.00 0.00 44.33 3.50
501 654 0.035458 CCCAAGACTCTTTGCGAGGT 59.965 55.000 0.00 0.00 44.33 3.85
502 655 1.301677 GCCCAAGACTCTTTGCGAGG 61.302 60.000 0.00 0.00 44.33 4.63
503 656 1.301677 GGCCCAAGACTCTTTGCGAG 61.302 60.000 0.00 0.00 45.56 5.03
504 657 1.302511 GGCCCAAGACTCTTTGCGA 60.303 57.895 0.00 0.00 0.00 5.10
505 658 0.890996 AAGGCCCAAGACTCTTTGCG 60.891 55.000 0.00 0.00 0.00 4.85
506 659 0.600057 CAAGGCCCAAGACTCTTTGC 59.400 55.000 0.00 2.61 0.00 3.68
507 660 1.610522 CACAAGGCCCAAGACTCTTTG 59.389 52.381 0.00 0.00 0.00 2.77
508 661 1.215423 ACACAAGGCCCAAGACTCTTT 59.785 47.619 0.00 0.00 0.00 2.52
509 662 0.846693 ACACAAGGCCCAAGACTCTT 59.153 50.000 0.00 0.00 0.00 2.85
510 663 0.846693 AACACAAGGCCCAAGACTCT 59.153 50.000 0.00 0.00 0.00 3.24
511 664 0.954452 CAACACAAGGCCCAAGACTC 59.046 55.000 0.00 0.00 0.00 3.36
512 665 1.109323 GCAACACAAGGCCCAAGACT 61.109 55.000 0.00 0.00 0.00 3.24
513 666 1.363807 GCAACACAAGGCCCAAGAC 59.636 57.895 0.00 0.00 0.00 3.01
514 667 1.076412 TGCAACACAAGGCCCAAGA 60.076 52.632 0.00 0.00 0.00 3.02
515 668 1.364901 CTGCAACACAAGGCCCAAG 59.635 57.895 0.00 0.00 0.00 3.61
516 669 2.795110 GCTGCAACACAAGGCCCAA 61.795 57.895 0.00 0.00 0.00 4.12
517 670 3.225798 GCTGCAACACAAGGCCCA 61.226 61.111 0.00 0.00 0.00 5.36
518 671 2.914097 AGCTGCAACACAAGGCCC 60.914 61.111 0.00 0.00 0.00 5.80
519 672 2.337532 CAGCTGCAACACAAGGCC 59.662 61.111 0.00 0.00 0.00 5.19
520 673 2.337532 CCAGCTGCAACACAAGGC 59.662 61.111 8.66 0.00 0.00 4.35
521 674 0.890542 TAGCCAGCTGCAACACAAGG 60.891 55.000 8.66 0.00 44.83 3.61
522 675 0.239347 GTAGCCAGCTGCAACACAAG 59.761 55.000 8.66 0.00 44.83 3.16
523 676 0.179020 AGTAGCCAGCTGCAACACAA 60.179 50.000 8.66 0.00 44.83 3.33
524 677 0.684535 TAGTAGCCAGCTGCAACACA 59.315 50.000 8.66 0.00 44.83 3.72
525 678 1.338200 ACTAGTAGCCAGCTGCAACAC 60.338 52.381 8.66 3.03 44.83 3.32
526 679 0.976641 ACTAGTAGCCAGCTGCAACA 59.023 50.000 8.66 0.00 44.83 3.33
527 680 1.066858 TCACTAGTAGCCAGCTGCAAC 60.067 52.381 8.66 5.70 44.83 4.17
528 681 1.266178 TCACTAGTAGCCAGCTGCAA 58.734 50.000 8.66 0.00 44.83 4.08
529 682 1.205655 CTTCACTAGTAGCCAGCTGCA 59.794 52.381 8.66 0.00 44.83 4.41
530 683 1.478510 TCTTCACTAGTAGCCAGCTGC 59.521 52.381 8.66 3.91 41.71 5.25
531 684 3.876274 TTCTTCACTAGTAGCCAGCTG 57.124 47.619 6.78 6.78 0.00 4.24
532 685 3.386402 GGATTCTTCACTAGTAGCCAGCT 59.614 47.826 0.00 0.00 30.72 4.24
533 686 3.723260 GGATTCTTCACTAGTAGCCAGC 58.277 50.000 0.00 0.00 30.72 4.85
534 687 3.797184 GCGGATTCTTCACTAGTAGCCAG 60.797 52.174 0.00 0.00 29.76 4.85
535 688 2.100916 GCGGATTCTTCACTAGTAGCCA 59.899 50.000 0.00 0.00 29.76 4.75
536 689 2.362717 AGCGGATTCTTCACTAGTAGCC 59.637 50.000 0.00 0.00 0.00 3.93
537 690 3.719173 AGCGGATTCTTCACTAGTAGC 57.281 47.619 0.00 0.00 0.00 3.58
538 691 5.508200 AGAAGCGGATTCTTCACTAGTAG 57.492 43.478 2.03 0.00 46.49 2.57
549 702 3.632145 AGAGAGAGAAGAGAAGCGGATTC 59.368 47.826 0.00 0.00 38.28 2.52
550 703 3.631250 AGAGAGAGAAGAGAAGCGGATT 58.369 45.455 0.00 0.00 0.00 3.01
551 704 3.297134 AGAGAGAGAAGAGAAGCGGAT 57.703 47.619 0.00 0.00 0.00 4.18
552 705 2.799126 AGAGAGAGAAGAGAAGCGGA 57.201 50.000 0.00 0.00 0.00 5.54
553 706 2.099098 GGAAGAGAGAGAAGAGAAGCGG 59.901 54.545 0.00 0.00 0.00 5.52
554 707 2.752354 TGGAAGAGAGAGAAGAGAAGCG 59.248 50.000 0.00 0.00 0.00 4.68
555 708 4.220602 AGTTGGAAGAGAGAGAAGAGAAGC 59.779 45.833 0.00 0.00 0.00 3.86
556 709 5.982890 AGTTGGAAGAGAGAGAAGAGAAG 57.017 43.478 0.00 0.00 0.00 2.85
557 710 6.071616 GCTTAGTTGGAAGAGAGAGAAGAGAA 60.072 42.308 0.00 0.00 0.00 2.87
558 711 5.417580 GCTTAGTTGGAAGAGAGAGAAGAGA 59.582 44.000 0.00 0.00 0.00 3.10
559 712 5.184864 TGCTTAGTTGGAAGAGAGAGAAGAG 59.815 44.000 0.00 0.00 0.00 2.85
560 713 5.080337 TGCTTAGTTGGAAGAGAGAGAAGA 58.920 41.667 0.00 0.00 0.00 2.87
561 714 5.398603 TGCTTAGTTGGAAGAGAGAGAAG 57.601 43.478 0.00 0.00 0.00 2.85
562 715 5.542779 GTTGCTTAGTTGGAAGAGAGAGAA 58.457 41.667 0.00 0.00 0.00 2.87
563 716 4.321304 CGTTGCTTAGTTGGAAGAGAGAGA 60.321 45.833 0.00 0.00 0.00 3.10
564 717 3.923461 CGTTGCTTAGTTGGAAGAGAGAG 59.077 47.826 0.00 0.00 0.00 3.20
565 718 3.572682 TCGTTGCTTAGTTGGAAGAGAGA 59.427 43.478 0.00 0.00 0.00 3.10
566 719 3.914312 TCGTTGCTTAGTTGGAAGAGAG 58.086 45.455 0.00 0.00 0.00 3.20
567 720 4.537135 ATCGTTGCTTAGTTGGAAGAGA 57.463 40.909 0.00 0.00 0.00 3.10
568 721 8.594881 ATTATATCGTTGCTTAGTTGGAAGAG 57.405 34.615 0.00 0.00 0.00 2.85
594 747 9.813826 ACATAAGCAGGCTATAAGGATTAAAAT 57.186 29.630 0.00 0.00 32.17 1.82
595 748 9.284968 GACATAAGCAGGCTATAAGGATTAAAA 57.715 33.333 0.00 0.00 32.17 1.52
596 749 8.436778 TGACATAAGCAGGCTATAAGGATTAAA 58.563 33.333 0.00 0.00 32.17 1.52
597 750 7.973402 TGACATAAGCAGGCTATAAGGATTAA 58.027 34.615 0.00 0.00 32.17 1.40
598 751 7.553504 TGACATAAGCAGGCTATAAGGATTA 57.446 36.000 0.00 0.00 33.48 1.75
599 752 6.439636 TGACATAAGCAGGCTATAAGGATT 57.560 37.500 0.00 0.00 0.00 3.01
600 753 6.443206 AGATGACATAAGCAGGCTATAAGGAT 59.557 38.462 0.00 0.00 0.00 3.24
601 754 5.782331 AGATGACATAAGCAGGCTATAAGGA 59.218 40.000 0.00 0.00 0.00 3.36
602 755 6.047511 AGATGACATAAGCAGGCTATAAGG 57.952 41.667 0.00 0.00 0.00 2.69
603 756 9.664332 AATAAGATGACATAAGCAGGCTATAAG 57.336 33.333 0.00 0.00 0.00 1.73
604 757 9.440773 CAATAAGATGACATAAGCAGGCTATAA 57.559 33.333 0.00 0.00 0.00 0.98
605 758 8.597167 ACAATAAGATGACATAAGCAGGCTATA 58.403 33.333 0.00 0.00 0.00 1.31
606 759 7.456725 ACAATAAGATGACATAAGCAGGCTAT 58.543 34.615 0.00 0.00 0.00 2.97
607 760 6.830912 ACAATAAGATGACATAAGCAGGCTA 58.169 36.000 0.00 0.00 0.00 3.93
608 761 5.688807 ACAATAAGATGACATAAGCAGGCT 58.311 37.500 0.00 0.00 0.00 4.58
609 762 6.708054 AGTACAATAAGATGACATAAGCAGGC 59.292 38.462 0.00 0.00 0.00 4.85
610 763 8.554528 CAAGTACAATAAGATGACATAAGCAGG 58.445 37.037 0.00 0.00 0.00 4.85
611 764 8.066595 GCAAGTACAATAAGATGACATAAGCAG 58.933 37.037 0.00 0.00 0.00 4.24
612 765 7.770433 AGCAAGTACAATAAGATGACATAAGCA 59.230 33.333 0.00 0.00 0.00 3.91
613 766 8.147642 AGCAAGTACAATAAGATGACATAAGC 57.852 34.615 0.00 0.00 0.00 3.09
614 767 9.539825 AGAGCAAGTACAATAAGATGACATAAG 57.460 33.333 0.00 0.00 0.00 1.73
617 770 9.319143 GTTAGAGCAAGTACAATAAGATGACAT 57.681 33.333 0.00 0.00 0.00 3.06
618 771 8.311109 TGTTAGAGCAAGTACAATAAGATGACA 58.689 33.333 0.00 0.00 0.00 3.58
619 772 8.703604 TGTTAGAGCAAGTACAATAAGATGAC 57.296 34.615 0.00 0.00 0.00 3.06
620 773 9.371136 CTTGTTAGAGCAAGTACAATAAGATGA 57.629 33.333 0.00 0.00 40.52 2.92
621 774 8.607459 CCTTGTTAGAGCAAGTACAATAAGATG 58.393 37.037 5.54 0.00 43.03 2.90
622 775 8.322091 ACCTTGTTAGAGCAAGTACAATAAGAT 58.678 33.333 5.54 0.00 43.03 2.40
623 776 7.676947 ACCTTGTTAGAGCAAGTACAATAAGA 58.323 34.615 5.54 0.00 43.03 2.10
624 777 7.907214 ACCTTGTTAGAGCAAGTACAATAAG 57.093 36.000 5.54 0.00 43.03 1.73
625 778 7.174253 CCAACCTTGTTAGAGCAAGTACAATAA 59.826 37.037 5.54 0.00 43.03 1.40
626 779 6.653320 CCAACCTTGTTAGAGCAAGTACAATA 59.347 38.462 5.54 0.00 43.03 1.90
627 780 5.473504 CCAACCTTGTTAGAGCAAGTACAAT 59.526 40.000 5.54 0.00 43.03 2.71
628 781 4.819630 CCAACCTTGTTAGAGCAAGTACAA 59.180 41.667 5.54 0.00 43.03 2.41
629 782 4.101898 TCCAACCTTGTTAGAGCAAGTACA 59.898 41.667 5.54 0.00 43.03 2.90
630 783 4.638304 TCCAACCTTGTTAGAGCAAGTAC 58.362 43.478 5.54 0.00 43.03 2.73
631 784 4.591498 TCTCCAACCTTGTTAGAGCAAGTA 59.409 41.667 5.54 0.00 43.03 2.24
632 785 3.391296 TCTCCAACCTTGTTAGAGCAAGT 59.609 43.478 5.54 0.00 43.03 3.16
633 786 4.008074 TCTCCAACCTTGTTAGAGCAAG 57.992 45.455 0.00 0.00 43.88 4.01
634 787 4.041567 TGATCTCCAACCTTGTTAGAGCAA 59.958 41.667 0.00 0.00 34.16 3.91
635 788 3.582647 TGATCTCCAACCTTGTTAGAGCA 59.417 43.478 0.00 0.00 34.46 4.26
636 789 4.207891 TGATCTCCAACCTTGTTAGAGC 57.792 45.455 0.00 0.00 0.00 4.09
637 790 5.363939 GGATGATCTCCAACCTTGTTAGAG 58.636 45.833 6.39 0.00 44.26 2.43
638 791 4.164221 GGGATGATCTCCAACCTTGTTAGA 59.836 45.833 11.73 0.00 46.98 2.10
639 792 4.080356 TGGGATGATCTCCAACCTTGTTAG 60.080 45.833 11.73 0.00 46.98 2.34
640 793 3.849574 TGGGATGATCTCCAACCTTGTTA 59.150 43.478 11.73 0.00 46.98 2.41
641 794 2.649312 TGGGATGATCTCCAACCTTGTT 59.351 45.455 11.73 0.00 46.98 2.83
642 795 2.025887 GTGGGATGATCTCCAACCTTGT 60.026 50.000 11.73 0.00 46.98 3.16
643 796 2.648059 GTGGGATGATCTCCAACCTTG 58.352 52.381 11.73 0.00 46.98 3.61
647 800 1.839994 TCTGGTGGGATGATCTCCAAC 59.160 52.381 10.04 10.04 46.22 3.77
648 801 2.268796 TCTGGTGGGATGATCTCCAA 57.731 50.000 11.73 0.10 46.98 3.53
649 802 2.502068 ATCTGGTGGGATGATCTCCA 57.498 50.000 11.73 6.31 46.98 3.86
652 805 5.919348 AATGTTATCTGGTGGGATGATCT 57.081 39.130 0.00 0.00 0.00 2.75
659 812 4.447724 CGAACGATAATGTTATCTGGTGGG 59.552 45.833 10.17 0.00 37.88 4.61
662 815 5.047847 CACCGAACGATAATGTTATCTGGT 58.952 41.667 10.17 9.31 37.88 4.00
883 1505 0.955919 GGTGGGAAAAGTGAGCGAGG 60.956 60.000 0.00 0.00 0.00 4.63
975 1598 3.220110 TCCTAGTTATAGCTGGTGGACG 58.780 50.000 0.00 0.00 0.00 4.79
981 1604 3.055530 CCATGGCTCCTAGTTATAGCTGG 60.056 52.174 0.00 0.00 36.48 4.85
986 1609 1.899814 CCGCCATGGCTCCTAGTTATA 59.100 52.381 33.07 0.00 39.32 0.98
987 1610 0.687354 CCGCCATGGCTCCTAGTTAT 59.313 55.000 33.07 0.00 39.32 1.89
1485 2210 4.974438 AGGTTGGAGGTCGGGCCA 62.974 66.667 4.39 0.00 40.61 5.36
1809 2568 3.691342 CTCCCCGTGTCCTGCGAA 61.691 66.667 0.00 0.00 0.00 4.70
1985 2751 7.844009 TGAAAACGGGATCAAATAGTAGTAGT 58.156 34.615 0.00 0.00 0.00 2.73
2004 2770 9.313118 AGATGTTCTTTACAACCAATTGAAAAC 57.687 29.630 7.12 0.00 40.89 2.43
2010 2785 6.323739 ACCACAGATGTTCTTTACAACCAATT 59.676 34.615 0.00 0.00 40.89 2.32
2024 2799 4.160252 AGCAAAGAAAACACCACAGATGTT 59.840 37.500 0.00 0.00 42.07 2.71
2025 2800 3.701040 AGCAAAGAAAACACCACAGATGT 59.299 39.130 0.00 0.00 0.00 3.06
2035 2863 2.163412 AGCAACACGAGCAAAGAAAACA 59.837 40.909 0.00 0.00 0.00 2.83
2142 2971 6.851222 AAGATATACTGCGACATTTTCTGG 57.149 37.500 0.00 0.00 0.00 3.86
2235 3070 1.336702 TGGATTTGAACAATGGCACGC 60.337 47.619 0.00 0.00 0.00 5.34
2297 3135 5.070313 GGCCCAATATAGAAATTTCTTGGCA 59.930 40.000 25.02 8.37 38.70 4.92
2312 3150 0.175531 GCGTGCAAAAGGCCCAATAT 59.824 50.000 0.00 0.00 43.89 1.28
2314 3152 2.343387 GCGTGCAAAAGGCCCAAT 59.657 55.556 0.00 0.00 43.89 3.16
2317 3155 3.846602 CTGTGCGTGCAAAAGGCCC 62.847 63.158 0.00 0.00 43.89 5.80
2318 3156 2.355009 CTGTGCGTGCAAAAGGCC 60.355 61.111 0.00 0.00 43.89 5.19
2319 3157 1.945662 CACTGTGCGTGCAAAAGGC 60.946 57.895 0.00 0.00 45.13 4.35
2320 3158 1.299316 CCACTGTGCGTGCAAAAGG 60.299 57.895 1.29 0.00 42.42 3.11
2321 3159 0.866906 CACCACTGTGCGTGCAAAAG 60.867 55.000 13.73 0.00 42.42 2.27
2322 3160 1.138459 CACCACTGTGCGTGCAAAA 59.862 52.632 13.73 0.00 42.42 2.44
2323 3161 2.769539 CCACCACTGTGCGTGCAAA 61.770 57.895 18.19 0.00 42.42 3.68
2324 3162 2.956799 ATCCACCACTGTGCGTGCAA 62.957 55.000 18.19 11.67 42.42 4.08
2325 3163 2.956799 AATCCACCACTGTGCGTGCA 62.957 55.000 18.19 8.92 42.42 4.57
2326 3164 2.260869 AATCCACCACTGTGCGTGC 61.261 57.895 18.19 0.00 42.42 5.34
2327 3165 1.165907 ACAATCCACCACTGTGCGTG 61.166 55.000 17.22 17.22 41.35 5.34
2328 3166 0.394938 TACAATCCACCACTGTGCGT 59.605 50.000 1.29 0.00 41.35 5.24
2329 3167 1.398041 CATACAATCCACCACTGTGCG 59.602 52.381 1.29 0.00 41.35 5.34
2330 3168 1.745087 CCATACAATCCACCACTGTGC 59.255 52.381 1.29 0.00 41.35 4.57
2331 3169 2.368439 CCCATACAATCCACCACTGTG 58.632 52.381 0.00 0.00 42.39 3.66
2332 3170 1.284785 CCCCATACAATCCACCACTGT 59.715 52.381 0.00 0.00 0.00 3.55
2333 3171 2.023788 GCCCCATACAATCCACCACTG 61.024 57.143 0.00 0.00 0.00 3.66
2334 3172 0.258774 GCCCCATACAATCCACCACT 59.741 55.000 0.00 0.00 0.00 4.00
2335 3173 0.258774 AGCCCCATACAATCCACCAC 59.741 55.000 0.00 0.00 0.00 4.16
2336 3174 0.258484 CAGCCCCATACAATCCACCA 59.742 55.000 0.00 0.00 0.00 4.17
2337 3175 0.258774 ACAGCCCCATACAATCCACC 59.741 55.000 0.00 0.00 0.00 4.61
2338 3176 1.392589 CACAGCCCCATACAATCCAC 58.607 55.000 0.00 0.00 0.00 4.02
2339 3177 0.258484 CCACAGCCCCATACAATCCA 59.742 55.000 0.00 0.00 0.00 3.41
2340 3178 1.109323 GCCACAGCCCCATACAATCC 61.109 60.000 0.00 0.00 0.00 3.01
2341 3179 2.419057 GCCACAGCCCCATACAATC 58.581 57.895 0.00 0.00 0.00 2.67
2342 3180 4.684623 GCCACAGCCCCATACAAT 57.315 55.556 0.00 0.00 0.00 2.71
2428 3270 2.286067 GCGAGTGTGAAATAGCATCTGC 60.286 50.000 0.00 0.00 42.49 4.26
2429 3271 2.034254 CGCGAGTGTGAAATAGCATCTG 60.034 50.000 0.00 0.00 0.00 2.90
2430 3272 2.159240 TCGCGAGTGTGAAATAGCATCT 60.159 45.455 3.71 0.00 0.00 2.90
2431 3273 2.193447 TCGCGAGTGTGAAATAGCATC 58.807 47.619 3.71 0.00 0.00 3.91
2432 3274 2.196749 CTCGCGAGTGTGAAATAGCAT 58.803 47.619 27.79 0.00 33.42 3.79
2433 3275 1.629013 CTCGCGAGTGTGAAATAGCA 58.371 50.000 27.79 0.00 33.42 3.49
2434 3276 0.299003 GCTCGCGAGTGTGAAATAGC 59.701 55.000 34.46 15.43 33.42 2.97
2435 3277 0.567968 CGCTCGCGAGTGTGAAATAG 59.432 55.000 35.29 10.68 42.83 1.73
2436 3278 2.648972 CGCTCGCGAGTGTGAAATA 58.351 52.632 35.29 0.00 42.83 1.40
2437 3279 3.463505 CGCTCGCGAGTGTGAAAT 58.536 55.556 35.29 0.00 42.83 2.17
2443 3285 1.154836 GTTTTGACGCTCGCGAGTG 60.155 57.895 39.80 39.80 44.11 3.51
2444 3286 2.645510 CGTTTTGACGCTCGCGAGT 61.646 57.895 34.46 19.24 42.83 4.18
2445 3287 2.092148 CGTTTTGACGCTCGCGAG 59.908 61.111 31.37 31.37 42.83 5.03
2446 3288 2.353723 TCGTTTTGACGCTCGCGA 60.354 55.556 18.98 9.26 42.83 5.87
2447 3289 2.201885 GTCGTTTTGACGCTCGCG 60.202 61.111 10.06 10.06 46.03 5.87
2465 3307 1.089920 CCGAGCTTCATTGAACCCAG 58.910 55.000 0.00 0.00 0.00 4.45
2473 3315 2.044946 GGGTGGCCGAGCTTCATT 60.045 61.111 0.00 0.00 0.00 2.57
2474 3316 4.473520 CGGGTGGCCGAGCTTCAT 62.474 66.667 0.00 0.00 34.88 2.57
2488 3330 4.474846 CCAAAATGCGGCGTCGGG 62.475 66.667 13.05 0.00 36.79 5.14
2734 3577 8.383318 TCAATGTTTGGAAAAGTGAACAAAAA 57.617 26.923 0.00 0.00 35.83 1.94
2735 3578 7.969536 TCAATGTTTGGAAAAGTGAACAAAA 57.030 28.000 0.00 0.00 35.83 2.44
2736 3579 7.821359 TGATCAATGTTTGGAAAAGTGAACAAA 59.179 29.630 0.00 0.00 35.83 2.83
2737 3580 7.326454 TGATCAATGTTTGGAAAAGTGAACAA 58.674 30.769 0.00 0.00 35.83 2.83
2738 3581 6.871844 TGATCAATGTTTGGAAAAGTGAACA 58.128 32.000 0.00 0.00 36.55 3.18
2739 3582 7.769272 TTGATCAATGTTTGGAAAAGTGAAC 57.231 32.000 3.38 0.00 0.00 3.18
2740 3583 8.961294 ATTTGATCAATGTTTGGAAAAGTGAA 57.039 26.923 9.40 0.00 0.00 3.18
2741 3584 8.961294 AATTTGATCAATGTTTGGAAAAGTGA 57.039 26.923 9.40 0.00 0.00 3.41
2792 3635 9.050601 GGAAATAATGTTTGAAAATGGTGAACA 57.949 29.630 0.00 0.00 35.04 3.18
2794 3637 8.144478 TCGGAAATAATGTTTGAAAATGGTGAA 58.856 29.630 0.00 0.00 0.00 3.18
2795 3638 7.661968 TCGGAAATAATGTTTGAAAATGGTGA 58.338 30.769 0.00 0.00 0.00 4.02
2796 3639 7.881643 TCGGAAATAATGTTTGAAAATGGTG 57.118 32.000 0.00 0.00 0.00 4.17
2846 3702 9.697250 CCGAGTTTCTTTTTAATTTTTCCAAAC 57.303 29.630 0.00 0.00 0.00 2.93
2857 3713 5.821516 TGCAGAACCGAGTTTCTTTTTAA 57.178 34.783 0.00 0.00 33.31 1.52
2859 3715 4.580580 AGATGCAGAACCGAGTTTCTTTTT 59.419 37.500 0.00 0.00 33.31 1.94
2901 3757 4.496336 GCTTGATCCGCAGCCCCT 62.496 66.667 0.00 0.00 0.00 4.79
2909 3765 5.052481 TGATGAGTTCTAATGCTTGATCCG 58.948 41.667 0.00 0.00 0.00 4.18
2925 3781 5.519808 TCCTTACCAGTAGACATGATGAGT 58.480 41.667 0.00 0.00 0.00 3.41
2933 3789 7.914427 ATTACATGATCCTTACCAGTAGACA 57.086 36.000 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.