Multiple sequence alignment - TraesCS2D01G152100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G152100 chr2D 100.000 2567 0 0 1 2567 95416259 95418825 0.000000e+00 4741.0
1 TraesCS2D01G152100 chr2D 96.512 86 2 1 2385 2470 615394269 615394353 9.580000e-30 141.0
2 TraesCS2D01G152100 chr2A 88.603 1281 72 33 379 1619 93934422 93935668 0.000000e+00 1489.0
3 TraesCS2D01G152100 chr2A 95.151 598 16 7 1794 2386 93935890 93936479 0.000000e+00 931.0
4 TraesCS2D01G152100 chr2A 91.304 115 9 1 26 140 93933956 93934069 3.420000e-34 156.0
5 TraesCS2D01G152100 chr2A 94.949 99 5 0 2469 2567 93936478 93936576 3.420000e-34 156.0
6 TraesCS2D01G152100 chr2A 86.364 132 15 3 137 266 93934281 93934411 9.580000e-30 141.0
7 TraesCS2D01G152100 chr2A 89.691 97 10 0 284 380 631859105 631859201 9.640000e-25 124.0
8 TraesCS2D01G152100 chr2A 89.535 86 5 1 1714 1795 93935726 93935811 3.490000e-19 106.0
9 TraesCS2D01G152100 chr2A 94.915 59 3 0 1635 1693 755852615 755852673 2.720000e-15 93.5
10 TraesCS2D01G152100 chr2B 94.363 479 20 5 1906 2383 146913099 146913571 0.000000e+00 728.0
11 TraesCS2D01G152100 chr2B 87.352 593 45 18 627 1209 146910116 146910688 0.000000e+00 652.0
12 TraesCS2D01G152100 chr2B 87.649 251 31 0 1350 1600 146911103 146911353 2.500000e-75 292.0
13 TraesCS2D01G152100 chr2B 97.000 100 3 0 2468 2567 146913572 146913671 4.390000e-38 169.0
14 TraesCS2D01G152100 chr2B 92.208 77 5 1 400 476 146910010 146910085 9.710000e-20 108.0
15 TraesCS2D01G152100 chr2B 91.379 58 5 0 1636 1693 16202132 16202075 2.120000e-11 80.5
16 TraesCS2D01G152100 chr4A 95.455 110 5 0 501 610 381227049 381226940 2.630000e-40 176.0
17 TraesCS2D01G152100 chr4A 91.057 123 7 3 501 623 416231503 416231385 2.040000e-36 163.0
18 TraesCS2D01G152100 chr4A 96.491 57 0 1 1637 1693 628636929 628636983 2.720000e-15 93.5
19 TraesCS2D01G152100 chrUn 94.643 112 6 0 503 614 30406062 30405951 9.440000e-40 174.0
20 TraesCS2D01G152100 chr7D 93.860 114 6 1 497 609 248393399 248393512 1.220000e-38 171.0
21 TraesCS2D01G152100 chr7D 96.552 87 2 1 2385 2471 633878767 633878852 2.660000e-30 143.0
22 TraesCS2D01G152100 chr7D 91.803 61 5 0 1633 1693 620330090 620330030 4.550000e-13 86.1
23 TraesCS2D01G152100 chr3A 91.406 128 6 5 505 632 46169205 46169083 1.220000e-38 171.0
24 TraesCS2D01G152100 chr5D 93.103 116 7 1 496 610 424123541 424123656 4.390000e-38 169.0
25 TraesCS2D01G152100 chr5D 91.011 89 8 0 281 369 416422267 416422355 1.250000e-23 121.0
26 TraesCS2D01G152100 chr5A 91.736 121 8 2 501 621 77990696 77990814 1.580000e-37 167.0
27 TraesCS2D01G152100 chr5A 91.057 123 9 1 487 609 528581266 528581386 5.680000e-37 165.0
28 TraesCS2D01G152100 chr5A 94.737 57 3 0 1637 1693 300157164 300157108 3.520000e-14 89.8
29 TraesCS2D01G152100 chr5B 94.898 98 3 2 2373 2470 629934861 629934766 4.420000e-33 152.0
30 TraesCS2D01G152100 chr5B 96.591 88 2 1 2385 2472 488608115 488608201 7.400000e-31 145.0
31 TraesCS2D01G152100 chr5B 88.889 99 11 0 284 382 321130331 321130429 3.470000e-24 122.0
32 TraesCS2D01G152100 chr4B 96.629 89 1 2 2385 2473 4556758 4556844 2.060000e-31 147.0
33 TraesCS2D01G152100 chr1B 95.652 92 1 3 2385 2475 681691091 681691002 7.400000e-31 145.0
34 TraesCS2D01G152100 chr1B 89.000 100 11 0 284 383 276137657 276137558 9.640000e-25 124.0
35 TraesCS2D01G152100 chr7B 96.552 87 1 2 2384 2470 43549585 43549669 2.660000e-30 143.0
36 TraesCS2D01G152100 chr7B 91.011 89 8 0 281 369 508189382 508189470 1.250000e-23 121.0
37 TraesCS2D01G152100 chr3B 95.556 90 3 1 2384 2473 690416978 690416890 2.660000e-30 143.0
38 TraesCS2D01G152100 chr3B 94.444 90 4 1 2385 2474 488190555 488190467 1.240000e-28 137.0
39 TraesCS2D01G152100 chr3B 93.103 87 6 0 284 370 119469106 119469020 7.460000e-26 128.0
40 TraesCS2D01G152100 chr3B 88.119 101 11 1 284 383 616774395 616774495 4.490000e-23 119.0
41 TraesCS2D01G152100 chr3B 81.707 82 11 4 29 108 672532593 672532672 5.930000e-07 65.8
42 TraesCS2D01G152100 chr3D 91.000 100 9 0 284 383 126955115 126955214 4.460000e-28 135.0
43 TraesCS2D01G152100 chr3D 92.593 54 3 1 1640 1693 453147327 453147379 2.740000e-10 76.8
44 TraesCS2D01G152100 chr1A 89.109 101 9 2 284 383 520805757 520805658 9.640000e-25 124.0
45 TraesCS2D01G152100 chr6A 94.737 57 3 0 1637 1693 3111395 3111339 3.520000e-14 89.8
46 TraesCS2D01G152100 chr7A 91.228 57 5 0 1637 1693 697006672 697006728 7.620000e-11 78.7
47 TraesCS2D01G152100 chr6B 91.228 57 5 0 1637 1693 664477142 664477198 7.620000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G152100 chr2D 95416259 95418825 2566 False 4741.0 4741 100.000000 1 2567 1 chr2D.!!$F1 2566
1 TraesCS2D01G152100 chr2A 93933956 93936576 2620 False 496.5 1489 90.984333 26 2567 6 chr2A.!!$F3 2541
2 TraesCS2D01G152100 chr2B 146910010 146913671 3661 False 389.8 728 91.714400 400 2567 5 chr2B.!!$F1 2167

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
520 737 0.035056 CTGCTCCCTCCGTTCCAAAT 60.035 55.0 0.0 0.0 0.0 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2168 4271 0.317479 GGTCAGACACAACCGCTACT 59.683 55.0 2.17 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.465040 ACGCAACGTAAATAAAAACGGA 57.535 36.364 0.00 0.00 43.25 4.69
23 24 4.456914 ACGCAACGTAAATAAAAACGGAG 58.543 39.130 0.00 0.00 43.25 4.63
24 25 3.841872 CGCAACGTAAATAAAAACGGAGG 59.158 43.478 0.00 0.00 43.25 4.30
57 58 4.536489 AGTAGCTGATCCCCACTACTTTTT 59.464 41.667 0.00 0.00 41.93 1.94
61 62 6.122964 AGCTGATCCCCACTACTTTTTATTC 58.877 40.000 0.00 0.00 0.00 1.75
81 82 9.571810 TTTATTCATCTCAACATAAACACATGC 57.428 29.630 0.00 0.00 0.00 4.06
90 91 5.762825 ACATAAACACATGCCATCTCATC 57.237 39.130 0.00 0.00 0.00 2.92
95 96 4.713824 ACACATGCCATCTCATCAAAAG 57.286 40.909 0.00 0.00 0.00 2.27
105 106 2.108075 TCTCATCAAAAGCCCACCTCAA 59.892 45.455 0.00 0.00 0.00 3.02
108 109 2.151502 TCAAAAGCCCACCTCAACAA 57.848 45.000 0.00 0.00 0.00 2.83
114 115 0.819582 GCCCACCTCAACAATGATGG 59.180 55.000 0.00 0.00 36.07 3.51
129 130 9.507280 CAACAATGATGGTCATTATTAGTTGAC 57.493 33.333 21.48 0.00 44.60 3.18
141 357 8.340757 TCATTATTAGTTGACCCCCATTACTTT 58.659 33.333 0.00 0.00 0.00 2.66
154 370 6.546034 CCCCCATTACTTTTATTCGACTCAAT 59.454 38.462 0.00 0.00 0.00 2.57
163 379 5.635549 TTATTCGACTCAATATGCACACG 57.364 39.130 0.00 0.00 0.00 4.49
171 387 2.210144 AATATGCACACGCCCCACCT 62.210 55.000 0.00 0.00 37.32 4.00
189 406 1.081892 CTCATCAAAGCTCACCACGG 58.918 55.000 0.00 0.00 0.00 4.94
190 407 0.955428 TCATCAAAGCTCACCACGGC 60.955 55.000 0.00 0.00 0.00 5.68
191 408 1.073025 ATCAAAGCTCACCACGGCA 59.927 52.632 0.00 0.00 0.00 5.69
192 409 0.322816 ATCAAAGCTCACCACGGCAT 60.323 50.000 0.00 0.00 0.00 4.40
193 410 1.210931 CAAAGCTCACCACGGCATG 59.789 57.895 0.00 0.00 0.00 4.06
194 411 1.228245 AAAGCTCACCACGGCATGT 60.228 52.632 0.00 0.00 0.00 3.21
195 412 0.036164 AAAGCTCACCACGGCATGTA 59.964 50.000 0.00 0.00 0.00 2.29
196 413 0.253044 AAGCTCACCACGGCATGTAT 59.747 50.000 0.00 0.00 0.00 2.29
197 414 0.462581 AGCTCACCACGGCATGTATG 60.463 55.000 0.00 0.00 0.00 2.39
200 417 0.610687 TCACCACGGCATGTATGTGA 59.389 50.000 13.41 8.12 38.49 3.58
248 465 7.812191 GCAACTTATGTTCAATACAATCCAACA 59.188 33.333 0.00 0.00 40.89 3.33
296 513 5.997384 AATATGTATTACTCCCTCCGTCC 57.003 43.478 0.00 0.00 0.00 4.79
297 514 2.077687 TGTATTACTCCCTCCGTCCC 57.922 55.000 0.00 0.00 0.00 4.46
298 515 1.288633 TGTATTACTCCCTCCGTCCCA 59.711 52.381 0.00 0.00 0.00 4.37
299 516 1.962100 GTATTACTCCCTCCGTCCCAG 59.038 57.143 0.00 0.00 0.00 4.45
300 517 0.635009 ATTACTCCCTCCGTCCCAGA 59.365 55.000 0.00 0.00 0.00 3.86
301 518 0.410663 TTACTCCCTCCGTCCCAGAA 59.589 55.000 0.00 0.00 0.00 3.02
302 519 0.635009 TACTCCCTCCGTCCCAGAAT 59.365 55.000 0.00 0.00 0.00 2.40
303 520 0.635009 ACTCCCTCCGTCCCAGAATA 59.365 55.000 0.00 0.00 0.00 1.75
304 521 1.007963 ACTCCCTCCGTCCCAGAATAA 59.992 52.381 0.00 0.00 0.00 1.40
305 522 1.689273 CTCCCTCCGTCCCAGAATAAG 59.311 57.143 0.00 0.00 0.00 1.73
306 523 1.007963 TCCCTCCGTCCCAGAATAAGT 59.992 52.381 0.00 0.00 0.00 2.24
307 524 1.139058 CCCTCCGTCCCAGAATAAGTG 59.861 57.143 0.00 0.00 0.00 3.16
308 525 1.831736 CCTCCGTCCCAGAATAAGTGT 59.168 52.381 0.00 0.00 0.00 3.55
309 526 2.159085 CCTCCGTCCCAGAATAAGTGTC 60.159 54.545 0.00 0.00 0.00 3.67
310 527 2.761208 CTCCGTCCCAGAATAAGTGTCT 59.239 50.000 0.00 0.00 0.00 3.41
311 528 2.758979 TCCGTCCCAGAATAAGTGTCTC 59.241 50.000 0.00 0.00 0.00 3.36
312 529 2.496070 CCGTCCCAGAATAAGTGTCTCA 59.504 50.000 0.00 0.00 0.00 3.27
313 530 3.056107 CCGTCCCAGAATAAGTGTCTCAA 60.056 47.826 0.00 0.00 0.00 3.02
314 531 3.927142 CGTCCCAGAATAAGTGTCTCAAC 59.073 47.826 0.00 0.00 0.00 3.18
315 532 4.322049 CGTCCCAGAATAAGTGTCTCAACT 60.322 45.833 0.00 0.00 0.00 3.16
316 533 5.552178 GTCCCAGAATAAGTGTCTCAACTT 58.448 41.667 0.00 0.00 42.89 2.66
317 534 5.998363 GTCCCAGAATAAGTGTCTCAACTTT 59.002 40.000 0.00 0.00 40.77 2.66
318 535 5.997746 TCCCAGAATAAGTGTCTCAACTTTG 59.002 40.000 0.00 0.00 40.77 2.77
319 536 5.765182 CCCAGAATAAGTGTCTCAACTTTGT 59.235 40.000 0.00 0.00 40.77 2.83
320 537 6.934645 CCCAGAATAAGTGTCTCAACTTTGTA 59.065 38.462 0.00 0.00 40.77 2.41
321 538 7.095187 CCCAGAATAAGTGTCTCAACTTTGTAC 60.095 40.741 0.00 0.00 40.77 2.90
322 539 7.657761 CCAGAATAAGTGTCTCAACTTTGTACT 59.342 37.037 0.00 0.00 40.77 2.73
323 540 9.692749 CAGAATAAGTGTCTCAACTTTGTACTA 57.307 33.333 0.00 0.00 40.77 1.82
329 546 9.880157 AAGTGTCTCAACTTTGTACTAAAGTTA 57.120 29.630 23.56 13.47 45.57 2.24
330 547 9.530633 AGTGTCTCAACTTTGTACTAAAGTTAG 57.469 33.333 23.56 20.62 45.57 2.34
331 548 9.310716 GTGTCTCAACTTTGTACTAAAGTTAGT 57.689 33.333 23.56 8.67 45.57 2.24
357 574 8.374327 ACAAAGTTGTACTAACCATAAGACAC 57.626 34.615 0.00 0.00 40.16 3.67
358 575 8.208903 ACAAAGTTGTACTAACCATAAGACACT 58.791 33.333 0.00 0.00 40.16 3.55
359 576 9.052759 CAAAGTTGTACTAACCATAAGACACTT 57.947 33.333 0.00 0.00 0.00 3.16
361 578 9.702494 AAGTTGTACTAACCATAAGACACTTAC 57.298 33.333 0.00 0.00 0.00 2.34
362 579 9.086758 AGTTGTACTAACCATAAGACACTTACT 57.913 33.333 0.00 0.00 0.00 2.24
363 580 9.702494 GTTGTACTAACCATAAGACACTTACTT 57.298 33.333 0.00 0.00 0.00 2.24
365 582 9.701098 TGTACTAACCATAAGACACTTACTTTG 57.299 33.333 0.00 0.00 0.00 2.77
366 583 9.148104 GTACTAACCATAAGACACTTACTTTGG 57.852 37.037 0.00 0.00 34.73 3.28
367 584 7.166167 ACTAACCATAAGACACTTACTTTGGG 58.834 38.462 11.66 0.00 33.86 4.12
368 585 5.836024 ACCATAAGACACTTACTTTGGGA 57.164 39.130 11.66 0.00 33.86 4.37
369 586 5.557866 ACCATAAGACACTTACTTTGGGAC 58.442 41.667 11.66 0.00 33.86 4.46
370 587 5.072600 ACCATAAGACACTTACTTTGGGACA 59.927 40.000 11.66 0.00 33.86 4.02
391 608 7.932491 GGGACAAAGGGAATATTAGTTCTAGTC 59.068 40.741 0.00 0.00 0.00 2.59
504 721 9.287373 AGTATGGTCTAGTCTAGTTATTACTGC 57.713 37.037 6.77 0.00 35.78 4.40
505 722 9.287373 GTATGGTCTAGTCTAGTTATTACTGCT 57.713 37.037 6.77 0.00 35.78 4.24
506 723 7.804843 TGGTCTAGTCTAGTTATTACTGCTC 57.195 40.000 6.77 0.00 35.78 4.26
509 726 6.999871 GTCTAGTCTAGTTATTACTGCTCCCT 59.000 42.308 6.77 0.00 35.78 4.20
510 727 7.173735 GTCTAGTCTAGTTATTACTGCTCCCTC 59.826 44.444 6.77 0.00 35.78 4.30
511 728 5.141910 AGTCTAGTTATTACTGCTCCCTCC 58.858 45.833 0.00 0.00 35.78 4.30
512 729 4.023021 GTCTAGTTATTACTGCTCCCTCCG 60.023 50.000 0.00 0.00 35.78 4.63
513 730 2.748388 AGTTATTACTGCTCCCTCCGT 58.252 47.619 0.00 0.00 31.99 4.69
514 731 3.105283 AGTTATTACTGCTCCCTCCGTT 58.895 45.455 0.00 0.00 31.99 4.44
515 732 3.132467 AGTTATTACTGCTCCCTCCGTTC 59.868 47.826 0.00 0.00 31.99 3.95
516 733 0.831307 ATTACTGCTCCCTCCGTTCC 59.169 55.000 0.00 0.00 0.00 3.62
518 735 0.543410 TACTGCTCCCTCCGTTCCAA 60.543 55.000 0.00 0.00 0.00 3.53
520 737 0.035056 CTGCTCCCTCCGTTCCAAAT 60.035 55.000 0.00 0.00 0.00 2.32
522 739 1.631388 TGCTCCCTCCGTTCCAAATTA 59.369 47.619 0.00 0.00 0.00 1.40
523 740 2.241176 TGCTCCCTCCGTTCCAAATTAT 59.759 45.455 0.00 0.00 0.00 1.28
526 743 3.537580 TCCCTCCGTTCCAAATTATTCG 58.462 45.455 0.00 0.00 0.00 3.34
528 745 3.311596 CCCTCCGTTCCAAATTATTCGTC 59.688 47.826 0.00 0.00 0.00 4.20
529 746 3.000925 CCTCCGTTCCAAATTATTCGTCG 59.999 47.826 0.00 0.00 0.00 5.12
530 747 2.349275 TCCGTTCCAAATTATTCGTCGC 59.651 45.455 0.00 0.00 0.00 5.19
531 748 2.094575 CCGTTCCAAATTATTCGTCGCA 59.905 45.455 0.00 0.00 0.00 5.10
532 749 3.342269 CGTTCCAAATTATTCGTCGCAG 58.658 45.455 0.00 0.00 0.00 5.18
533 750 3.061563 CGTTCCAAATTATTCGTCGCAGA 59.938 43.478 0.00 0.00 0.00 4.26
534 751 4.434989 CGTTCCAAATTATTCGTCGCAGAA 60.435 41.667 0.00 0.00 39.69 3.02
539 756 5.448496 CCAAATTATTCGTCGCAGAAATGGA 60.448 40.000 2.73 0.00 39.69 3.41
550 767 6.216569 GTCGCAGAAATGGATGTATCTAGAA 58.783 40.000 0.00 0.00 39.69 2.10
551 768 6.144724 GTCGCAGAAATGGATGTATCTAGAAC 59.855 42.308 0.00 0.00 39.69 3.01
554 771 7.867909 CGCAGAAATGGATGTATCTAGAACTAA 59.132 37.037 0.00 0.00 0.00 2.24
555 772 9.547753 GCAGAAATGGATGTATCTAGAACTAAA 57.452 33.333 0.00 0.00 0.00 1.85
590 817 9.147732 AGATACATCCATATCTGTGACAAGTAA 57.852 33.333 0.00 0.00 39.87 2.24
593 820 8.668510 ACATCCATATCTGTGACAAGTAATTC 57.331 34.615 0.00 0.00 0.00 2.17
594 821 7.439356 ACATCCATATCTGTGACAAGTAATTCG 59.561 37.037 0.00 0.00 0.00 3.34
595 822 7.107639 TCCATATCTGTGACAAGTAATTCGA 57.892 36.000 0.00 0.00 0.00 3.71
604 831 4.240096 GACAAGTAATTCGAAACGGAGGA 58.760 43.478 0.00 0.00 0.00 3.71
655 885 2.739292 GCCACTTTTCGTTTTTCTCCC 58.261 47.619 0.00 0.00 0.00 4.30
656 886 2.100087 GCCACTTTTCGTTTTTCTCCCA 59.900 45.455 0.00 0.00 0.00 4.37
657 887 3.702330 CCACTTTTCGTTTTTCTCCCAC 58.298 45.455 0.00 0.00 0.00 4.61
658 888 3.359654 CACTTTTCGTTTTTCTCCCACG 58.640 45.455 0.00 0.00 35.18 4.94
660 890 0.664224 TTTCGTTTTTCTCCCACGCC 59.336 50.000 0.00 0.00 33.85 5.68
662 892 0.179040 TCGTTTTTCTCCCACGCCTT 60.179 50.000 0.00 0.00 33.85 4.35
663 893 0.040425 CGTTTTTCTCCCACGCCTTG 60.040 55.000 0.00 0.00 0.00 3.61
678 908 1.135721 GCCTTGATGCTTCCATGGAAC 59.864 52.381 23.63 19.02 32.40 3.62
679 909 1.402968 CCTTGATGCTTCCATGGAACG 59.597 52.381 23.63 18.85 32.40 3.95
684 914 1.377202 GCTTCCATGGAACGCAGGA 60.377 57.895 29.01 10.81 32.56 3.86
705 935 7.067981 GCAGGACATTCTTCTAATCCAATTCTT 59.932 37.037 0.00 0.00 31.41 2.52
714 944 5.556915 TCTAATCCAATTCTTGTCGGTTGT 58.443 37.500 0.00 0.00 0.00 3.32
743 973 1.552578 GCCGGTCCAACCCTTAAATT 58.447 50.000 1.90 0.00 33.75 1.82
750 980 4.077108 GTCCAACCCTTAAATTCCGTTCT 58.923 43.478 0.00 0.00 0.00 3.01
778 1008 7.835634 TTACGCTTTCAAAAAGGAAAAACAT 57.164 28.000 1.96 0.00 36.42 2.71
779 1009 8.928270 TTACGCTTTCAAAAAGGAAAAACATA 57.072 26.923 1.96 0.00 36.42 2.29
780 1010 7.229228 ACGCTTTCAAAAAGGAAAAACATAC 57.771 32.000 1.96 0.00 36.42 2.39
816 1046 7.859377 TCGTAGTATATTGCAAGCAGTACTTAC 59.141 37.037 16.08 9.66 36.04 2.34
817 1047 7.861372 CGTAGTATATTGCAAGCAGTACTTACT 59.139 37.037 16.08 14.38 36.04 2.24
818 1048 9.530633 GTAGTATATTGCAAGCAGTACTTACTT 57.469 33.333 16.08 0.00 36.04 2.24
926 1165 3.357079 CAACAGCCACCGCACCTC 61.357 66.667 0.00 0.00 37.52 3.85
946 1185 3.680490 TCCACAGTTCACACTTGACAAA 58.320 40.909 0.00 0.00 0.00 2.83
957 1196 3.812053 ACACTTGACAAATCTGCTCTGTC 59.188 43.478 0.00 0.00 39.93 3.51
958 1197 3.062763 ACTTGACAAATCTGCTCTGTCG 58.937 45.455 0.00 0.00 41.94 4.35
959 1198 3.243873 ACTTGACAAATCTGCTCTGTCGA 60.244 43.478 0.00 0.00 41.94 4.20
960 1199 2.951726 TGACAAATCTGCTCTGTCGAG 58.048 47.619 0.00 0.00 41.94 4.04
961 1200 2.297315 TGACAAATCTGCTCTGTCGAGT 59.703 45.455 0.00 0.00 41.94 4.18
962 1201 2.665537 GACAAATCTGCTCTGTCGAGTG 59.334 50.000 0.00 0.00 39.53 3.51
963 1202 2.297315 ACAAATCTGCTCTGTCGAGTGA 59.703 45.455 0.00 0.00 39.53 3.41
964 1203 2.922387 CAAATCTGCTCTGTCGAGTGAG 59.078 50.000 9.51 9.51 39.53 3.51
965 1204 1.832883 ATCTGCTCTGTCGAGTGAGT 58.167 50.000 13.85 0.00 39.53 3.41
966 1205 0.877743 TCTGCTCTGTCGAGTGAGTG 59.122 55.000 13.85 8.85 39.53 3.51
967 1206 0.877743 CTGCTCTGTCGAGTGAGTGA 59.122 55.000 13.85 3.59 39.53 3.41
976 1215 0.524392 CGAGTGAGTGACTGATCGGC 60.524 60.000 0.00 0.00 33.83 5.54
993 1232 1.336887 CGGCATACGGTAGCTGCTAAT 60.337 52.381 11.57 2.90 39.42 1.73
1074 1322 3.653009 GTGCTGCTTGTCTGCGCA 61.653 61.111 10.98 10.98 45.68 6.09
1217 1535 4.625028 ACGTACACCCTCTGTTTCTAAAC 58.375 43.478 0.00 0.00 39.33 2.01
1243 1757 9.566624 CGTAAGATGTTTTTGCAGTTTTATTTG 57.433 29.630 0.00 0.00 43.02 2.32
1248 1762 7.078011 TGTTTTTGCAGTTTTATTTGAACCC 57.922 32.000 0.00 0.00 0.00 4.11
1253 1767 5.136828 TGCAGTTTTATTTGAACCCAGAGA 58.863 37.500 0.00 0.00 0.00 3.10
1254 1768 5.774690 TGCAGTTTTATTTGAACCCAGAGAT 59.225 36.000 0.00 0.00 0.00 2.75
1279 1798 4.607293 ACGTGCATACATACATGGATCT 57.393 40.909 0.00 0.00 0.00 2.75
1281 1800 5.470368 ACGTGCATACATACATGGATCTAC 58.530 41.667 0.00 0.00 0.00 2.59
1300 1823 5.809464 TCTACGTATGCTGCATGAAAATTG 58.191 37.500 24.59 8.95 0.00 2.32
1330 1872 1.942677 CATGCGGATTTGGGTACGTA 58.057 50.000 0.00 0.00 0.00 3.57
1347 1889 2.095768 ACGTATGCATGCAGTGTTCAAC 60.096 45.455 26.69 12.93 0.00 3.18
1359 1901 1.031235 TGTTCAACTACGACCCGACA 58.969 50.000 0.00 0.00 0.00 4.35
1600 2142 2.409870 CCAAGTTCTCGGCCCATGC 61.410 63.158 0.00 0.00 0.00 4.06
1619 2161 7.356540 CCCATGCGTTGATTATTATCGTAAAA 58.643 34.615 0.00 0.00 33.23 1.52
1638 2197 9.840427 TCGTAAAATAAAGGTGTACTGTACTAC 57.160 33.333 17.98 13.59 0.00 2.73
1642 2201 7.415592 AATAAAGGTGTACTGTACTACTCCC 57.584 40.000 17.98 10.14 32.71 4.30
1643 2202 4.671596 AAGGTGTACTGTACTACTCCCT 57.328 45.455 17.98 11.87 32.71 4.20
1644 2203 4.233632 AGGTGTACTGTACTACTCCCTC 57.766 50.000 17.98 3.63 32.71 4.30
1645 2204 3.053768 AGGTGTACTGTACTACTCCCTCC 60.054 52.174 17.98 8.11 32.71 4.30
1646 2205 2.941720 GTGTACTGTACTACTCCCTCCG 59.058 54.545 17.98 0.00 0.00 4.63
1647 2206 1.946081 GTACTGTACTACTCCCTCCGC 59.054 57.143 10.64 0.00 0.00 5.54
1648 2207 0.624785 ACTGTACTACTCCCTCCGCT 59.375 55.000 0.00 0.00 0.00 5.52
1649 2208 1.310904 CTGTACTACTCCCTCCGCTC 58.689 60.000 0.00 0.00 0.00 5.03
1650 2209 0.106819 TGTACTACTCCCTCCGCTCC 60.107 60.000 0.00 0.00 0.00 4.70
1651 2210 0.183252 GTACTACTCCCTCCGCTCCT 59.817 60.000 0.00 0.00 0.00 3.69
1652 2211 1.419387 GTACTACTCCCTCCGCTCCTA 59.581 57.143 0.00 0.00 0.00 2.94
1653 2212 0.924823 ACTACTCCCTCCGCTCCTAA 59.075 55.000 0.00 0.00 0.00 2.69
1654 2213 1.287146 ACTACTCCCTCCGCTCCTAAA 59.713 52.381 0.00 0.00 0.00 1.85
1655 2214 2.091222 ACTACTCCCTCCGCTCCTAAAT 60.091 50.000 0.00 0.00 0.00 1.40
1656 2215 2.769602 ACTCCCTCCGCTCCTAAATA 57.230 50.000 0.00 0.00 0.00 1.40
1657 2216 3.261818 ACTCCCTCCGCTCCTAAATAT 57.738 47.619 0.00 0.00 0.00 1.28
1658 2217 4.399483 ACTCCCTCCGCTCCTAAATATA 57.601 45.455 0.00 0.00 0.00 0.86
1659 2218 4.748701 ACTCCCTCCGCTCCTAAATATAA 58.251 43.478 0.00 0.00 0.00 0.98
1660 2219 4.773149 ACTCCCTCCGCTCCTAAATATAAG 59.227 45.833 0.00 0.00 0.00 1.73
1661 2220 4.748701 TCCCTCCGCTCCTAAATATAAGT 58.251 43.478 0.00 0.00 0.00 2.24
1662 2221 4.771054 TCCCTCCGCTCCTAAATATAAGTC 59.229 45.833 0.00 0.00 0.00 3.01
1663 2222 4.773149 CCCTCCGCTCCTAAATATAAGTCT 59.227 45.833 0.00 0.00 0.00 3.24
1664 2223 5.246429 CCCTCCGCTCCTAAATATAAGTCTT 59.754 44.000 0.00 0.00 0.00 3.01
1665 2224 6.239629 CCCTCCGCTCCTAAATATAAGTCTTT 60.240 42.308 0.00 0.00 0.00 2.52
1666 2225 7.217906 CCTCCGCTCCTAAATATAAGTCTTTT 58.782 38.462 0.00 0.00 0.00 2.27
1667 2226 7.715686 CCTCCGCTCCTAAATATAAGTCTTTTT 59.284 37.037 0.00 0.00 0.00 1.94
1668 2227 9.760077 CTCCGCTCCTAAATATAAGTCTTTTTA 57.240 33.333 0.00 0.00 0.00 1.52
1669 2228 9.760077 TCCGCTCCTAAATATAAGTCTTTTTAG 57.240 33.333 7.75 7.75 33.47 1.85
1670 2229 9.760077 CCGCTCCTAAATATAAGTCTTTTTAGA 57.240 33.333 13.43 3.76 34.90 2.10
1685 2244 9.136323 AGTCTTTTTAGATGTTTCAAATGGACT 57.864 29.630 0.00 0.00 0.00 3.85
1696 2255 7.592938 TGTTTCAAATGGACTACAACATCATC 58.407 34.615 0.00 0.00 0.00 2.92
1704 2263 1.935873 CTACAACATCATCCGTGCCTG 59.064 52.381 0.00 0.00 0.00 4.85
1706 2265 0.729116 CAACATCATCCGTGCCTGTC 59.271 55.000 0.00 0.00 0.00 3.51
1717 2276 1.858458 CGTGCCTGTCGTGTTATATGG 59.142 52.381 0.00 0.00 0.00 2.74
1720 2279 1.867233 GCCTGTCGTGTTATATGGCAG 59.133 52.381 0.00 0.00 45.59 4.85
1795 2360 6.898041 GCATGTGCCGATTATACTTTTGATA 58.102 36.000 0.00 0.00 34.31 2.15
1840 3881 0.597568 CAAAGTTGGCCAATGCTCGA 59.402 50.000 23.66 0.00 37.74 4.04
1842 3883 1.549203 AAGTTGGCCAATGCTCGAAT 58.451 45.000 23.66 0.00 37.74 3.34
1843 3884 2.418368 AGTTGGCCAATGCTCGAATA 57.582 45.000 23.66 0.00 37.74 1.75
1844 3885 2.936202 AGTTGGCCAATGCTCGAATAT 58.064 42.857 23.66 0.00 37.74 1.28
1845 3886 4.085357 AGTTGGCCAATGCTCGAATATA 57.915 40.909 23.66 0.00 37.74 0.86
1846 3887 4.067896 AGTTGGCCAATGCTCGAATATAG 58.932 43.478 23.66 0.00 37.74 1.31
1879 3976 6.810911 ACATCACTCGCAGTTATAAGATTCT 58.189 36.000 0.00 0.00 0.00 2.40
1917 4014 0.454600 GAGCACGTCTTCCGATACCA 59.545 55.000 0.00 0.00 40.70 3.25
1927 4024 6.157211 CGTCTTCCGATACCATAAGCTTTAT 58.843 40.000 3.20 0.00 39.56 1.40
1928 4025 7.040201 ACGTCTTCCGATACCATAAGCTTTATA 60.040 37.037 3.20 0.00 40.70 0.98
1971 4068 6.931840 AGTTTGTAGTTCCAGATTCAGAAGAC 59.068 38.462 0.00 0.00 0.00 3.01
2002 4099 0.320771 AACAGCTTAGACAGGCACGG 60.321 55.000 0.00 0.00 0.00 4.94
2117 4220 0.317854 TCATGTCATCGACGATCGCC 60.318 55.000 16.60 2.22 40.21 5.54
2168 4271 0.676782 TCTCGATGACGGACAGCTCA 60.677 55.000 0.00 0.00 40.21 4.26
2186 4289 1.000607 TCAGTAGCGGTTGTGTCTGAC 60.001 52.381 0.00 0.00 0.00 3.51
2261 4364 2.030562 CGGTTCACGGTTCCAGCT 59.969 61.111 0.00 0.00 39.42 4.24
2354 4457 8.530311 TGTATCACAAAGGAATTGCACATTAAT 58.470 29.630 0.00 0.00 43.13 1.40
2358 4461 8.584157 TCACAAAGGAATTGCACATTAATAACT 58.416 29.630 0.00 0.00 43.13 2.24
2359 4462 9.206870 CACAAAGGAATTGCACATTAATAACTT 57.793 29.630 0.00 0.00 43.13 2.66
2383 4486 6.917217 TTAACCAATTTTTGCAGAAACAGG 57.083 33.333 16.29 16.29 0.00 4.00
2384 4487 4.486125 ACCAATTTTTGCAGAAACAGGT 57.514 36.364 17.28 17.28 0.00 4.00
2385 4488 5.606348 ACCAATTTTTGCAGAAACAGGTA 57.394 34.783 20.00 0.00 31.25 3.08
2386 4489 5.356426 ACCAATTTTTGCAGAAACAGGTAC 58.644 37.500 20.00 0.00 31.25 3.34
2387 4490 5.128663 ACCAATTTTTGCAGAAACAGGTACT 59.871 36.000 20.00 3.31 43.88 2.73
2388 4491 5.691754 CCAATTTTTGCAGAAACAGGTACTC 59.308 40.000 4.29 0.00 34.60 2.59
2389 4492 4.911514 TTTTTGCAGAAACAGGTACTCC 57.088 40.909 0.00 0.00 34.60 3.85
2390 4493 2.561478 TTGCAGAAACAGGTACTCCC 57.439 50.000 0.00 0.00 34.60 4.30
2392 4495 1.623811 TGCAGAAACAGGTACTCCCTC 59.376 52.381 0.00 0.00 43.86 4.30
2393 4496 1.066071 GCAGAAACAGGTACTCCCTCC 60.066 57.143 0.00 0.00 43.86 4.30
2394 4497 1.204941 CAGAAACAGGTACTCCCTCCG 59.795 57.143 0.00 0.00 43.86 4.63
2395 4498 1.203149 AGAAACAGGTACTCCCTCCGT 60.203 52.381 0.00 0.00 43.86 4.69
2396 4499 1.622312 GAAACAGGTACTCCCTCCGTT 59.378 52.381 0.00 0.00 43.86 4.44
2397 4500 1.264295 AACAGGTACTCCCTCCGTTC 58.736 55.000 0.00 0.00 43.86 3.95
2398 4501 0.614134 ACAGGTACTCCCTCCGTTCC 60.614 60.000 0.00 0.00 43.86 3.62
2399 4502 0.613853 CAGGTACTCCCTCCGTTCCA 60.614 60.000 0.00 0.00 43.86 3.53
2400 4503 0.338814 AGGTACTCCCTCCGTTCCAT 59.661 55.000 0.00 0.00 40.71 3.41
2401 4504 1.572415 AGGTACTCCCTCCGTTCCATA 59.428 52.381 0.00 0.00 40.71 2.74
2402 4505 2.023695 AGGTACTCCCTCCGTTCCATAA 60.024 50.000 0.00 0.00 40.71 1.90
2403 4506 2.767960 GGTACTCCCTCCGTTCCATAAA 59.232 50.000 0.00 0.00 0.00 1.40
2404 4507 3.390311 GGTACTCCCTCCGTTCCATAAAT 59.610 47.826 0.00 0.00 0.00 1.40
2405 4508 4.590222 GGTACTCCCTCCGTTCCATAAATA 59.410 45.833 0.00 0.00 0.00 1.40
2406 4509 5.247792 GGTACTCCCTCCGTTCCATAAATAT 59.752 44.000 0.00 0.00 0.00 1.28
2407 4510 6.438425 GGTACTCCCTCCGTTCCATAAATATA 59.562 42.308 0.00 0.00 0.00 0.86
2408 4511 7.038799 GGTACTCCCTCCGTTCCATAAATATAA 60.039 40.741 0.00 0.00 0.00 0.98
2409 4512 7.005709 ACTCCCTCCGTTCCATAAATATAAG 57.994 40.000 0.00 0.00 0.00 1.73
2410 4513 6.557633 ACTCCCTCCGTTCCATAAATATAAGT 59.442 38.462 0.00 0.00 0.00 2.24
2411 4514 7.001099 TCCCTCCGTTCCATAAATATAAGTC 57.999 40.000 0.00 0.00 0.00 3.01
2412 4515 5.867716 CCCTCCGTTCCATAAATATAAGTCG 59.132 44.000 0.00 0.00 0.00 4.18
2413 4516 6.453092 CCTCCGTTCCATAAATATAAGTCGT 58.547 40.000 0.00 0.00 0.00 4.34
2414 4517 6.927381 CCTCCGTTCCATAAATATAAGTCGTT 59.073 38.462 0.00 0.00 0.00 3.85
2415 4518 7.095774 CCTCCGTTCCATAAATATAAGTCGTTG 60.096 40.741 0.00 0.00 0.00 4.10
2416 4519 6.702723 TCCGTTCCATAAATATAAGTCGTTGG 59.297 38.462 0.00 0.00 0.00 3.77
2417 4520 6.073440 CCGTTCCATAAATATAAGTCGTTGGG 60.073 42.308 0.00 0.00 0.00 4.12
2418 4521 6.073440 CGTTCCATAAATATAAGTCGTTGGGG 60.073 42.308 0.00 0.00 0.00 4.96
2419 4522 5.871834 TCCATAAATATAAGTCGTTGGGGG 58.128 41.667 0.00 0.00 0.00 5.40
2420 4523 5.607592 TCCATAAATATAAGTCGTTGGGGGA 59.392 40.000 0.00 0.00 0.00 4.81
2421 4524 5.938125 CCATAAATATAAGTCGTTGGGGGAG 59.062 44.000 0.00 0.00 0.00 4.30
2422 4525 6.465321 CCATAAATATAAGTCGTTGGGGGAGT 60.465 42.308 0.00 0.00 0.00 3.85
2423 4526 4.417426 AATATAAGTCGTTGGGGGAGTG 57.583 45.455 0.00 0.00 0.00 3.51
2424 4527 1.652947 ATAAGTCGTTGGGGGAGTGT 58.347 50.000 0.00 0.00 0.00 3.55
2425 4528 2.307496 TAAGTCGTTGGGGGAGTGTA 57.693 50.000 0.00 0.00 0.00 2.90
2426 4529 1.426751 AAGTCGTTGGGGGAGTGTAA 58.573 50.000 0.00 0.00 0.00 2.41
2427 4530 1.426751 AGTCGTTGGGGGAGTGTAAA 58.573 50.000 0.00 0.00 0.00 2.01
2428 4531 1.071228 AGTCGTTGGGGGAGTGTAAAC 59.929 52.381 0.00 0.00 0.00 2.01
2429 4532 1.071228 GTCGTTGGGGGAGTGTAAACT 59.929 52.381 0.00 0.00 0.00 2.66
2430 4533 1.071071 TCGTTGGGGGAGTGTAAACTG 59.929 52.381 0.00 0.00 0.00 3.16
2431 4534 1.071071 CGTTGGGGGAGTGTAAACTGA 59.929 52.381 0.00 0.00 0.00 3.41
2432 4535 2.485835 CGTTGGGGGAGTGTAAACTGAA 60.486 50.000 0.00 0.00 0.00 3.02
2433 4536 2.882761 GTTGGGGGAGTGTAAACTGAAC 59.117 50.000 0.00 0.00 0.00 3.18
2434 4537 2.414612 TGGGGGAGTGTAAACTGAACT 58.585 47.619 0.00 0.00 0.00 3.01
2435 4538 2.370849 TGGGGGAGTGTAAACTGAACTC 59.629 50.000 0.00 0.00 39.70 3.01
2439 4542 3.055209 GAGTGTAAACTGAACTCCCCC 57.945 52.381 0.00 0.00 35.36 5.40
2440 4543 2.370849 GAGTGTAAACTGAACTCCCCCA 59.629 50.000 0.00 0.00 35.36 4.96
2441 4544 2.372172 AGTGTAAACTGAACTCCCCCAG 59.628 50.000 0.00 0.00 36.53 4.45
2442 4545 1.073284 TGTAAACTGAACTCCCCCAGC 59.927 52.381 0.00 0.00 33.90 4.85
2443 4546 0.323629 TAAACTGAACTCCCCCAGCG 59.676 55.000 0.00 0.00 33.90 5.18
2444 4547 1.415672 AAACTGAACTCCCCCAGCGA 61.416 55.000 0.00 0.00 33.90 4.93
2445 4548 2.113243 AACTGAACTCCCCCAGCGAC 62.113 60.000 0.00 0.00 33.90 5.19
2446 4549 2.203788 TGAACTCCCCCAGCGACT 60.204 61.111 0.00 0.00 0.00 4.18
2447 4550 1.831652 CTGAACTCCCCCAGCGACTT 61.832 60.000 0.00 0.00 0.00 3.01
2448 4551 0.543410 TGAACTCCCCCAGCGACTTA 60.543 55.000 0.00 0.00 0.00 2.24
2449 4552 0.831307 GAACTCCCCCAGCGACTTAT 59.169 55.000 0.00 0.00 0.00 1.73
2450 4553 2.037144 GAACTCCCCCAGCGACTTATA 58.963 52.381 0.00 0.00 0.00 0.98
2451 4554 2.400467 ACTCCCCCAGCGACTTATAT 57.600 50.000 0.00 0.00 0.00 0.86
2452 4555 2.690840 ACTCCCCCAGCGACTTATATT 58.309 47.619 0.00 0.00 0.00 1.28
2453 4556 3.046374 ACTCCCCCAGCGACTTATATTT 58.954 45.455 0.00 0.00 0.00 1.40
2454 4557 3.071167 ACTCCCCCAGCGACTTATATTTC 59.929 47.826 0.00 0.00 0.00 2.17
2455 4558 2.036733 TCCCCCAGCGACTTATATTTCG 59.963 50.000 0.00 0.25 38.31 3.46
2456 4559 2.413837 CCCCAGCGACTTATATTTCGG 58.586 52.381 5.84 0.00 35.73 4.30
2457 4560 2.036733 CCCCAGCGACTTATATTTCGGA 59.963 50.000 5.84 0.00 35.73 4.55
2458 4561 3.493699 CCCCAGCGACTTATATTTCGGAA 60.494 47.826 5.84 0.00 35.73 4.30
2459 4562 3.493503 CCCAGCGACTTATATTTCGGAAC 59.506 47.826 5.84 0.00 35.73 3.62
2460 4563 4.116961 CCAGCGACTTATATTTCGGAACA 58.883 43.478 5.84 0.00 35.73 3.18
2461 4564 4.209288 CCAGCGACTTATATTTCGGAACAG 59.791 45.833 5.84 0.00 35.73 3.16
2462 4565 5.041287 CAGCGACTTATATTTCGGAACAGA 58.959 41.667 5.84 0.00 35.73 3.41
2463 4566 5.174035 CAGCGACTTATATTTCGGAACAGAG 59.826 44.000 5.84 0.00 35.73 3.35
2464 4567 4.444720 GCGACTTATATTTCGGAACAGAGG 59.555 45.833 5.84 0.00 35.73 3.69
2465 4568 5.589192 CGACTTATATTTCGGAACAGAGGT 58.411 41.667 0.00 0.00 0.00 3.85
2466 4569 6.732154 CGACTTATATTTCGGAACAGAGGTA 58.268 40.000 0.00 0.00 0.00 3.08
2477 4580 6.127101 TCGGAACAGAGGTAATAGATCAGAA 58.873 40.000 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.389307 CCTCCGTTTTTATTTACGTTGCGTA 60.389 40.000 0.00 0.00 41.54 4.42
1 2 4.456914 CTCCGTTTTTATTTACGTTGCGT 58.543 39.130 0.00 0.00 44.35 5.24
2 3 3.841872 CCTCCGTTTTTATTTACGTTGCG 59.158 43.478 0.00 0.00 36.09 4.85
3 4 4.083377 TCCCTCCGTTTTTATTTACGTTGC 60.083 41.667 0.00 0.00 36.09 4.17
4 5 5.179929 ACTCCCTCCGTTTTTATTTACGTTG 59.820 40.000 0.00 0.00 36.09 4.10
5 6 5.308014 ACTCCCTCCGTTTTTATTTACGTT 58.692 37.500 0.00 0.00 36.09 3.99
6 7 4.898320 ACTCCCTCCGTTTTTATTTACGT 58.102 39.130 0.00 0.00 36.09 3.57
7 8 5.291858 GGTACTCCCTCCGTTTTTATTTACG 59.708 44.000 0.00 0.00 37.50 3.18
8 9 6.409704 AGGTACTCCCTCCGTTTTTATTTAC 58.590 40.000 0.00 0.00 40.71 2.01
9 10 6.625532 AGGTACTCCCTCCGTTTTTATTTA 57.374 37.500 0.00 0.00 40.71 1.40
10 11 5.509832 AGGTACTCCCTCCGTTTTTATTT 57.490 39.130 0.00 0.00 40.71 1.40
11 12 6.214208 ACTTAGGTACTCCCTCCGTTTTTATT 59.786 38.462 0.00 0.00 44.81 1.40
12 13 5.723405 ACTTAGGTACTCCCTCCGTTTTTAT 59.277 40.000 0.00 0.00 44.81 1.40
13 14 5.086621 ACTTAGGTACTCCCTCCGTTTTTA 58.913 41.667 0.00 0.00 44.81 1.52
14 15 3.906218 ACTTAGGTACTCCCTCCGTTTTT 59.094 43.478 0.00 0.00 44.81 1.94
15 16 3.514539 ACTTAGGTACTCCCTCCGTTTT 58.485 45.455 0.00 0.00 44.81 2.43
16 17 3.181393 ACTTAGGTACTCCCTCCGTTT 57.819 47.619 0.00 0.00 44.81 3.60
17 18 2.915657 ACTTAGGTACTCCCTCCGTT 57.084 50.000 0.00 0.00 44.81 4.44
18 19 2.422661 GCTACTTAGGTACTCCCTCCGT 60.423 54.545 0.00 0.00 44.81 4.69
19 20 2.158638 AGCTACTTAGGTACTCCCTCCG 60.159 54.545 0.00 0.00 44.81 4.63
20 21 3.117587 TCAGCTACTTAGGTACTCCCTCC 60.118 52.174 0.00 0.00 44.81 4.30
21 22 4.167652 TCAGCTACTTAGGTACTCCCTC 57.832 50.000 0.00 0.00 44.81 4.30
23 24 3.827876 GGATCAGCTACTTAGGTACTCCC 59.172 52.174 0.00 0.00 41.75 4.30
24 25 3.827876 GGGATCAGCTACTTAGGTACTCC 59.172 52.174 0.00 6.83 41.75 3.85
57 58 7.338957 TGGCATGTGTTTATGTTGAGATGAATA 59.661 33.333 0.00 0.00 0.00 1.75
61 62 5.313520 TGGCATGTGTTTATGTTGAGATG 57.686 39.130 0.00 0.00 0.00 2.90
72 73 5.471556 TTTTGATGAGATGGCATGTGTTT 57.528 34.783 3.81 0.00 0.00 2.83
81 82 1.753073 GGTGGGCTTTTGATGAGATGG 59.247 52.381 0.00 0.00 0.00 3.51
90 91 2.364970 TCATTGTTGAGGTGGGCTTTTG 59.635 45.455 0.00 0.00 0.00 2.44
95 96 0.819582 CCATCATTGTTGAGGTGGGC 59.180 55.000 0.00 0.00 34.73 5.36
114 115 7.287810 AGTAATGGGGGTCAACTAATAATGAC 58.712 38.462 0.00 0.00 44.07 3.06
129 130 5.433526 TGAGTCGAATAAAAGTAATGGGGG 58.566 41.667 0.00 0.00 0.00 5.40
141 357 4.026062 GCGTGTGCATATTGAGTCGAATAA 60.026 41.667 0.00 0.00 42.15 1.40
154 370 3.323758 GAGGTGGGGCGTGTGCATA 62.324 63.158 0.00 0.00 45.35 3.14
163 379 1.000396 AGCTTTGATGAGGTGGGGC 60.000 57.895 0.00 0.00 0.00 5.80
171 387 0.955428 GCCGTGGTGAGCTTTGATGA 60.955 55.000 0.00 0.00 0.00 2.92
272 489 6.610425 GGGACGGAGGGAGTAATACATATTAT 59.390 42.308 0.00 0.00 31.50 1.28
274 491 4.776308 GGGACGGAGGGAGTAATACATATT 59.224 45.833 0.00 0.00 0.00 1.28
275 492 4.202749 TGGGACGGAGGGAGTAATACATAT 60.203 45.833 0.00 0.00 0.00 1.78
276 493 3.140707 TGGGACGGAGGGAGTAATACATA 59.859 47.826 0.00 0.00 0.00 2.29
277 494 2.090943 TGGGACGGAGGGAGTAATACAT 60.091 50.000 0.00 0.00 0.00 2.29
278 495 1.288633 TGGGACGGAGGGAGTAATACA 59.711 52.381 0.00 0.00 0.00 2.29
279 496 1.962100 CTGGGACGGAGGGAGTAATAC 59.038 57.143 0.00 0.00 36.31 1.89
280 497 1.854939 TCTGGGACGGAGGGAGTAATA 59.145 52.381 0.00 0.00 39.80 0.98
281 498 0.635009 TCTGGGACGGAGGGAGTAAT 59.365 55.000 0.00 0.00 39.80 1.89
282 499 2.089911 TCTGGGACGGAGGGAGTAA 58.910 57.895 0.00 0.00 39.80 2.24
283 500 3.845559 TCTGGGACGGAGGGAGTA 58.154 61.111 0.00 0.00 39.80 2.59
290 507 2.758979 GAGACACTTATTCTGGGACGGA 59.241 50.000 0.00 0.00 45.11 4.69
291 508 2.496070 TGAGACACTTATTCTGGGACGG 59.504 50.000 0.00 0.00 0.00 4.79
292 509 3.868757 TGAGACACTTATTCTGGGACG 57.131 47.619 0.00 0.00 0.00 4.79
293 510 5.153950 AGTTGAGACACTTATTCTGGGAC 57.846 43.478 0.00 0.00 0.00 4.46
294 511 5.825593 AAGTTGAGACACTTATTCTGGGA 57.174 39.130 0.00 0.00 35.10 4.37
295 512 5.765182 ACAAAGTTGAGACACTTATTCTGGG 59.235 40.000 0.00 0.00 35.87 4.45
296 513 6.867662 ACAAAGTTGAGACACTTATTCTGG 57.132 37.500 0.00 0.00 35.87 3.86
297 514 8.594881 AGTACAAAGTTGAGACACTTATTCTG 57.405 34.615 0.00 0.00 35.87 3.02
302 519 9.880157 AACTTTAGTACAAAGTTGAGACACTTA 57.120 29.630 23.48 0.00 45.58 2.24
303 520 8.788325 AACTTTAGTACAAAGTTGAGACACTT 57.212 30.769 23.48 7.33 45.58 3.16
304 521 9.530633 CTAACTTTAGTACAAAGTTGAGACACT 57.469 33.333 27.85 13.98 46.41 3.55
305 522 9.310716 ACTAACTTTAGTACAAAGTTGAGACAC 57.689 33.333 27.85 0.00 46.41 3.67
331 548 9.480053 GTGTCTTATGGTTAGTACAACTTTGTA 57.520 33.333 0.00 0.00 42.35 2.41
332 549 8.208903 AGTGTCTTATGGTTAGTACAACTTTGT 58.791 33.333 0.00 0.00 44.86 2.83
333 550 8.603242 AGTGTCTTATGGTTAGTACAACTTTG 57.397 34.615 0.00 0.00 0.00 2.77
335 552 9.702494 GTAAGTGTCTTATGGTTAGTACAACTT 57.298 33.333 0.00 0.00 0.00 2.66
336 553 9.086758 AGTAAGTGTCTTATGGTTAGTACAACT 57.913 33.333 0.00 0.00 0.00 3.16
337 554 9.702494 AAGTAAGTGTCTTATGGTTAGTACAAC 57.298 33.333 0.00 0.00 0.00 3.32
339 556 9.701098 CAAAGTAAGTGTCTTATGGTTAGTACA 57.299 33.333 0.00 0.00 0.00 2.90
340 557 9.148104 CCAAAGTAAGTGTCTTATGGTTAGTAC 57.852 37.037 0.00 0.00 0.00 2.73
341 558 8.316214 CCCAAAGTAAGTGTCTTATGGTTAGTA 58.684 37.037 6.79 0.00 0.00 1.82
342 559 7.016858 TCCCAAAGTAAGTGTCTTATGGTTAGT 59.983 37.037 6.79 0.00 0.00 2.24
343 560 7.333672 GTCCCAAAGTAAGTGTCTTATGGTTAG 59.666 40.741 6.79 0.00 0.00 2.34
344 561 7.163441 GTCCCAAAGTAAGTGTCTTATGGTTA 58.837 38.462 6.79 0.00 0.00 2.85
345 562 6.002082 GTCCCAAAGTAAGTGTCTTATGGTT 58.998 40.000 6.79 0.00 0.00 3.67
346 563 5.072600 TGTCCCAAAGTAAGTGTCTTATGGT 59.927 40.000 6.79 0.00 0.00 3.55
347 564 5.556915 TGTCCCAAAGTAAGTGTCTTATGG 58.443 41.667 0.00 0.00 0.00 2.74
348 565 7.308589 CCTTTGTCCCAAAGTAAGTGTCTTATG 60.309 40.741 13.84 0.00 0.00 1.90
349 566 6.715264 CCTTTGTCCCAAAGTAAGTGTCTTAT 59.285 38.462 13.84 0.00 0.00 1.73
350 567 6.059484 CCTTTGTCCCAAAGTAAGTGTCTTA 58.941 40.000 13.84 0.00 0.00 2.10
351 568 4.887655 CCTTTGTCCCAAAGTAAGTGTCTT 59.112 41.667 13.84 0.00 0.00 3.01
352 569 4.461198 CCTTTGTCCCAAAGTAAGTGTCT 58.539 43.478 13.84 0.00 0.00 3.41
353 570 3.568430 CCCTTTGTCCCAAAGTAAGTGTC 59.432 47.826 13.84 0.00 0.00 3.67
354 571 3.203487 TCCCTTTGTCCCAAAGTAAGTGT 59.797 43.478 13.84 0.00 0.00 3.55
355 572 3.827722 TCCCTTTGTCCCAAAGTAAGTG 58.172 45.455 13.84 1.04 0.00 3.16
356 573 4.529716 TTCCCTTTGTCCCAAAGTAAGT 57.470 40.909 13.84 0.00 0.00 2.24
357 574 7.718334 AATATTCCCTTTGTCCCAAAGTAAG 57.282 36.000 13.84 4.77 0.00 2.34
358 575 8.395605 ACTAATATTCCCTTTGTCCCAAAGTAA 58.604 33.333 13.84 9.10 0.00 2.24
359 576 7.935405 ACTAATATTCCCTTTGTCCCAAAGTA 58.065 34.615 13.84 2.75 0.00 2.24
360 577 6.800890 ACTAATATTCCCTTTGTCCCAAAGT 58.199 36.000 13.84 0.86 0.00 2.66
361 578 7.615757 AGAACTAATATTCCCTTTGTCCCAAAG 59.384 37.037 9.25 9.25 0.00 2.77
362 579 7.475299 AGAACTAATATTCCCTTTGTCCCAAA 58.525 34.615 0.00 0.00 0.00 3.28
363 580 7.039722 AGAACTAATATTCCCTTTGTCCCAA 57.960 36.000 0.00 0.00 0.00 4.12
364 581 6.652205 AGAACTAATATTCCCTTTGTCCCA 57.348 37.500 0.00 0.00 0.00 4.37
365 582 7.803131 ACTAGAACTAATATTCCCTTTGTCCC 58.197 38.462 0.00 0.00 0.00 4.46
366 583 8.483758 TGACTAGAACTAATATTCCCTTTGTCC 58.516 37.037 0.00 0.00 0.00 4.02
367 584 9.886132 TTGACTAGAACTAATATTCCCTTTGTC 57.114 33.333 0.00 0.00 0.00 3.18
411 628 8.790718 AGATTTGATGGTATGAAGTATGAATGC 58.209 33.333 0.00 0.00 0.00 3.56
420 637 7.381766 TGTTGTGAGATTTGATGGTATGAAG 57.618 36.000 0.00 0.00 0.00 3.02
504 721 3.560068 CGAATAATTTGGAACGGAGGGAG 59.440 47.826 0.00 0.00 0.00 4.30
505 722 3.054948 ACGAATAATTTGGAACGGAGGGA 60.055 43.478 0.00 0.00 0.00 4.20
506 723 3.275999 ACGAATAATTTGGAACGGAGGG 58.724 45.455 0.00 0.00 0.00 4.30
509 726 2.349275 GCGACGAATAATTTGGAACGGA 59.651 45.455 0.00 0.00 0.00 4.69
510 727 2.094575 TGCGACGAATAATTTGGAACGG 59.905 45.455 0.00 0.00 0.00 4.44
511 728 3.061563 TCTGCGACGAATAATTTGGAACG 59.938 43.478 0.00 0.00 0.00 3.95
512 729 4.593597 TCTGCGACGAATAATTTGGAAC 57.406 40.909 0.00 0.00 0.00 3.62
513 730 5.614923 TTTCTGCGACGAATAATTTGGAA 57.385 34.783 0.00 0.00 0.00 3.53
514 731 5.448496 CCATTTCTGCGACGAATAATTTGGA 60.448 40.000 0.00 0.00 0.00 3.53
515 732 4.734854 CCATTTCTGCGACGAATAATTTGG 59.265 41.667 0.00 0.00 0.00 3.28
516 733 5.568482 TCCATTTCTGCGACGAATAATTTG 58.432 37.500 0.00 0.00 0.00 2.32
518 735 5.296780 ACATCCATTTCTGCGACGAATAATT 59.703 36.000 0.00 0.00 0.00 1.40
520 737 4.188462 ACATCCATTTCTGCGACGAATAA 58.812 39.130 0.00 0.00 0.00 1.40
522 739 2.632377 ACATCCATTTCTGCGACGAAT 58.368 42.857 0.00 0.00 0.00 3.34
523 740 2.093306 ACATCCATTTCTGCGACGAA 57.907 45.000 0.00 0.00 0.00 3.85
526 743 5.773575 TCTAGATACATCCATTTCTGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
528 745 6.219473 AGTTCTAGATACATCCATTTCTGCG 58.781 40.000 0.00 0.00 0.00 5.18
529 746 9.547753 TTTAGTTCTAGATACATCCATTTCTGC 57.452 33.333 0.00 0.00 0.00 4.26
560 777 9.539194 TTGTCACAGATATGGATGTATCTAGAT 57.461 33.333 10.73 10.73 38.93 1.98
562 779 8.801299 ACTTGTCACAGATATGGATGTATCTAG 58.199 37.037 0.00 0.00 38.93 2.43
576 803 5.120208 CCGTTTCGAATTACTTGTCACAGAT 59.880 40.000 0.00 0.00 0.00 2.90
578 805 4.446385 TCCGTTTCGAATTACTTGTCACAG 59.554 41.667 0.00 0.00 0.00 3.66
580 807 4.143179 CCTCCGTTTCGAATTACTTGTCAC 60.143 45.833 0.00 0.00 0.00 3.67
581 808 3.991773 CCTCCGTTTCGAATTACTTGTCA 59.008 43.478 0.00 0.00 0.00 3.58
590 817 3.947910 TGTACTTCCTCCGTTTCGAAT 57.052 42.857 0.00 0.00 0.00 3.34
593 820 6.069684 AGTATATGTACTTCCTCCGTTTCG 57.930 41.667 0.00 0.00 37.94 3.46
655 885 0.099968 CATGGAAGCATCAAGGCGTG 59.900 55.000 0.00 0.00 39.27 5.34
656 886 1.033746 CCATGGAAGCATCAAGGCGT 61.034 55.000 5.56 0.00 39.27 5.68
657 887 0.749091 TCCATGGAAGCATCAAGGCG 60.749 55.000 13.46 0.00 39.27 5.52
658 888 1.135721 GTTCCATGGAAGCATCAAGGC 59.864 52.381 27.73 8.73 34.49 4.35
660 890 1.202222 GCGTTCCATGGAAGCATCAAG 60.202 52.381 27.73 8.86 34.49 3.02
662 892 0.322366 TGCGTTCCATGGAAGCATCA 60.322 50.000 31.09 22.07 35.25 3.07
663 893 0.379669 CTGCGTTCCATGGAAGCATC 59.620 55.000 32.97 21.02 37.50 3.91
678 908 3.797039 TGGATTAGAAGAATGTCCTGCG 58.203 45.455 0.00 0.00 0.00 5.18
679 909 6.545298 AGAATTGGATTAGAAGAATGTCCTGC 59.455 38.462 0.00 0.00 0.00 4.85
705 935 2.659244 GCCGACGAACAACCGACA 60.659 61.111 0.00 0.00 0.00 4.35
743 973 4.241590 TGAAAGCGTAAAGTAGAACGGA 57.758 40.909 0.00 0.00 39.46 4.69
750 980 8.862074 GTTTTTCCTTTTTGAAAGCGTAAAGTA 58.138 29.630 0.00 0.00 35.77 2.24
778 1008 6.183360 GCAATATACTACGACTCCGCATAGTA 60.183 42.308 0.00 0.00 39.95 1.82
779 1009 5.391736 GCAATATACTACGACTCCGCATAGT 60.392 44.000 0.00 0.00 39.95 2.12
780 1010 5.029014 GCAATATACTACGACTCCGCATAG 58.971 45.833 0.00 0.00 39.95 2.23
816 1046 5.154222 GCGGAAAGGAGTGTTGAAATTAAG 58.846 41.667 0.00 0.00 0.00 1.85
817 1047 4.580995 TGCGGAAAGGAGTGTTGAAATTAA 59.419 37.500 0.00 0.00 0.00 1.40
818 1048 4.023536 GTGCGGAAAGGAGTGTTGAAATTA 60.024 41.667 0.00 0.00 0.00 1.40
819 1049 2.955660 TGCGGAAAGGAGTGTTGAAATT 59.044 40.909 0.00 0.00 0.00 1.82
836 1066 3.357079 GTGAGGCCAAGTGTGCGG 61.357 66.667 5.01 0.00 0.00 5.69
926 1165 4.336433 AGATTTGTCAAGTGTGAACTGTGG 59.664 41.667 0.00 0.00 34.87 4.17
957 1196 0.524392 GCCGATCAGTCACTCACTCG 60.524 60.000 0.00 0.00 30.26 4.18
958 1197 0.528017 TGCCGATCAGTCACTCACTC 59.472 55.000 0.00 0.00 30.26 3.51
959 1198 1.189752 ATGCCGATCAGTCACTCACT 58.810 50.000 0.00 0.00 34.67 3.41
960 1199 2.464865 GTATGCCGATCAGTCACTCAC 58.535 52.381 0.00 0.00 0.00 3.51
961 1200 1.065551 CGTATGCCGATCAGTCACTCA 59.934 52.381 0.00 0.00 39.56 3.41
962 1201 1.600663 CCGTATGCCGATCAGTCACTC 60.601 57.143 0.00 0.00 39.56 3.51
963 1202 0.385751 CCGTATGCCGATCAGTCACT 59.614 55.000 0.00 0.00 39.56 3.41
964 1203 0.102481 ACCGTATGCCGATCAGTCAC 59.898 55.000 0.00 0.00 39.56 3.67
965 1204 1.607148 CTACCGTATGCCGATCAGTCA 59.393 52.381 0.00 0.00 39.56 3.41
966 1205 1.666311 GCTACCGTATGCCGATCAGTC 60.666 57.143 0.00 0.00 39.56 3.51
967 1206 0.314302 GCTACCGTATGCCGATCAGT 59.686 55.000 0.00 0.00 39.56 3.41
1065 1313 0.745486 CATGGAGGAATGCGCAGACA 60.745 55.000 18.32 8.53 0.00 3.41
1074 1322 2.696125 ACCCCCGCATGGAGGAAT 60.696 61.111 0.00 0.00 37.49 3.01
1217 1535 9.566624 CAAATAAAACTGCAAAAACATCTTACG 57.433 29.630 0.00 0.00 0.00 3.18
1248 1762 3.436700 TGTATGCACGTACCATCTCTG 57.563 47.619 4.36 0.00 0.00 3.35
1253 1767 4.039852 TCCATGTATGTATGCACGTACCAT 59.960 41.667 0.00 6.20 43.68 3.55
1254 1768 3.385111 TCCATGTATGTATGCACGTACCA 59.615 43.478 0.00 0.00 43.68 3.25
1279 1798 4.397730 ACCAATTTTCATGCAGCATACGTA 59.602 37.500 7.82 0.00 0.00 3.57
1281 1800 3.548668 CACCAATTTTCATGCAGCATACG 59.451 43.478 7.82 0.00 0.00 3.06
1300 1823 1.386525 ATCCGCATGCATCAACCACC 61.387 55.000 19.57 0.00 0.00 4.61
1330 1872 2.160219 CGTAGTTGAACACTGCATGCAT 59.840 45.455 22.97 5.92 37.98 3.96
1347 1889 4.111016 TGCGCTGTCGGGTCGTAG 62.111 66.667 9.73 0.00 35.95 3.51
1429 1971 3.384532 GTCGGCCCCGGACTTGTA 61.385 66.667 0.73 0.00 40.25 2.41
1619 2161 6.739664 AGGGAGTAGTACAGTACACCTTTAT 58.260 40.000 13.37 0.00 34.87 1.40
1636 2195 2.769602 ATTTAGGAGCGGAGGGAGTA 57.230 50.000 0.00 0.00 0.00 2.59
1637 2196 2.769602 TATTTAGGAGCGGAGGGAGT 57.230 50.000 0.00 0.00 0.00 3.85
1638 2197 4.773149 ACTTATATTTAGGAGCGGAGGGAG 59.227 45.833 0.00 0.00 0.00 4.30
1640 2199 4.773149 AGACTTATATTTAGGAGCGGAGGG 59.227 45.833 0.00 0.00 0.00 4.30
1642 2201 8.664211 AAAAAGACTTATATTTAGGAGCGGAG 57.336 34.615 0.00 0.00 0.00 4.63
1643 2202 9.760077 CTAAAAAGACTTATATTTAGGAGCGGA 57.240 33.333 8.91 0.00 33.69 5.54
1644 2203 9.760077 TCTAAAAAGACTTATATTTAGGAGCGG 57.240 33.333 13.94 0.00 36.48 5.52
1658 2217 9.750125 GTCCATTTGAAACATCTAAAAAGACTT 57.250 29.630 0.00 0.00 0.00 3.01
1659 2218 9.136323 AGTCCATTTGAAACATCTAAAAAGACT 57.864 29.630 0.00 0.00 31.00 3.24
1664 2223 9.959749 GTTGTAGTCCATTTGAAACATCTAAAA 57.040 29.630 0.00 0.00 0.00 1.52
1665 2224 9.126151 TGTTGTAGTCCATTTGAAACATCTAAA 57.874 29.630 0.00 0.00 0.00 1.85
1666 2225 8.684386 TGTTGTAGTCCATTTGAAACATCTAA 57.316 30.769 0.00 0.00 0.00 2.10
1667 2226 8.862325 ATGTTGTAGTCCATTTGAAACATCTA 57.138 30.769 0.00 0.00 32.81 1.98
1668 2227 7.448161 TGATGTTGTAGTCCATTTGAAACATCT 59.552 33.333 20.14 0.00 46.34 2.90
1669 2228 7.592938 TGATGTTGTAGTCCATTTGAAACATC 58.407 34.615 15.27 15.27 46.37 3.06
1670 2229 7.523293 TGATGTTGTAGTCCATTTGAAACAT 57.477 32.000 0.00 0.00 38.95 2.71
1671 2230 6.951062 TGATGTTGTAGTCCATTTGAAACA 57.049 33.333 0.00 0.00 0.00 2.83
1672 2231 7.029563 GGATGATGTTGTAGTCCATTTGAAAC 58.970 38.462 0.00 0.00 0.00 2.78
1673 2232 6.128035 CGGATGATGTTGTAGTCCATTTGAAA 60.128 38.462 0.00 0.00 0.00 2.69
1674 2233 5.353956 CGGATGATGTTGTAGTCCATTTGAA 59.646 40.000 0.00 0.00 0.00 2.69
1675 2234 4.875536 CGGATGATGTTGTAGTCCATTTGA 59.124 41.667 0.00 0.00 0.00 2.69
1676 2235 4.635765 ACGGATGATGTTGTAGTCCATTTG 59.364 41.667 0.00 0.00 0.00 2.32
1677 2236 4.635765 CACGGATGATGTTGTAGTCCATTT 59.364 41.667 0.00 0.00 0.00 2.32
1678 2237 4.191544 CACGGATGATGTTGTAGTCCATT 58.808 43.478 0.00 0.00 0.00 3.16
1679 2238 3.797039 CACGGATGATGTTGTAGTCCAT 58.203 45.455 0.00 0.00 0.00 3.41
1680 2239 2.676750 GCACGGATGATGTTGTAGTCCA 60.677 50.000 0.00 0.00 0.00 4.02
1681 2240 1.933853 GCACGGATGATGTTGTAGTCC 59.066 52.381 0.00 0.00 0.00 3.85
1682 2241 1.933853 GGCACGGATGATGTTGTAGTC 59.066 52.381 0.00 0.00 0.00 2.59
1685 2244 1.277842 ACAGGCACGGATGATGTTGTA 59.722 47.619 0.00 0.00 0.00 2.41
1688 2247 0.740868 CGACAGGCACGGATGATGTT 60.741 55.000 0.00 0.00 30.02 2.71
1696 2255 1.858458 CATATAACACGACAGGCACGG 59.142 52.381 0.00 0.00 34.93 4.94
1704 2263 6.872020 ACATATAACCTGCCATATAACACGAC 59.128 38.462 0.00 0.00 0.00 4.34
1706 2265 6.649141 ACACATATAACCTGCCATATAACACG 59.351 38.462 0.00 0.00 0.00 4.49
1717 2276 9.236691 CAAAATCATTACACACATATAACCTGC 57.763 33.333 0.00 0.00 0.00 4.85
1786 2351 6.968904 GCATTGACGATTCATGTATCAAAAGT 59.031 34.615 12.20 2.42 33.29 2.66
1787 2352 6.968335 TGCATTGACGATTCATGTATCAAAAG 59.032 34.615 12.20 2.90 33.29 2.27
1795 2360 3.943381 ACATCTGCATTGACGATTCATGT 59.057 39.130 3.97 0.00 0.00 3.21
1840 3881 7.551262 TGCGAGTGATGTTGGTTTTACTATATT 59.449 33.333 0.00 0.00 0.00 1.28
1842 3883 6.399743 TGCGAGTGATGTTGGTTTTACTATA 58.600 36.000 0.00 0.00 0.00 1.31
1843 3884 5.242434 TGCGAGTGATGTTGGTTTTACTAT 58.758 37.500 0.00 0.00 0.00 2.12
1844 3885 4.633175 TGCGAGTGATGTTGGTTTTACTA 58.367 39.130 0.00 0.00 0.00 1.82
1845 3886 3.472652 TGCGAGTGATGTTGGTTTTACT 58.527 40.909 0.00 0.00 0.00 2.24
1846 3887 3.250040 ACTGCGAGTGATGTTGGTTTTAC 59.750 43.478 0.00 0.00 0.00 2.01
1879 3976 4.394610 TGCTCTTGCGCTTTTGTGATATTA 59.605 37.500 9.73 0.00 43.34 0.98
1927 4024 8.991243 ACAAACTTATATGCTTTGTACTCGTA 57.009 30.769 12.97 0.00 36.56 3.43
1928 4025 7.900782 ACAAACTTATATGCTTTGTACTCGT 57.099 32.000 12.97 0.00 36.56 4.18
1971 4068 5.164954 GTCTAAGCTGTTACTTCTGTCTGG 58.835 45.833 0.00 0.00 0.00 3.86
2117 4220 3.672295 GAGAGAAGGCCAGCCCACG 62.672 68.421 5.01 0.00 36.58 4.94
2168 4271 0.317479 GGTCAGACACAACCGCTACT 59.683 55.000 2.17 0.00 0.00 2.57
2174 4277 0.468226 TCTGTGGGTCAGACACAACC 59.532 55.000 7.20 0.00 46.98 3.77
2331 4434 9.369904 GTTATTAATGTGCAATTCCTTTGTGAT 57.630 29.630 0.00 0.00 37.65 3.06
2332 4435 8.584157 AGTTATTAATGTGCAATTCCTTTGTGA 58.416 29.630 0.00 0.00 37.65 3.58
2358 4461 7.391833 ACCTGTTTCTGCAAAAATTGGTTAAAA 59.608 29.630 6.57 0.00 0.00 1.52
2359 4462 6.881602 ACCTGTTTCTGCAAAAATTGGTTAAA 59.118 30.769 6.57 0.00 0.00 1.52
2383 4486 4.684484 ATTTATGGAACGGAGGGAGTAC 57.316 45.455 0.00 0.00 0.00 2.73
2384 4487 7.731688 ACTTATATTTATGGAACGGAGGGAGTA 59.268 37.037 0.00 0.00 0.00 2.59
2385 4488 6.557633 ACTTATATTTATGGAACGGAGGGAGT 59.442 38.462 0.00 0.00 0.00 3.85
2386 4489 7.005709 ACTTATATTTATGGAACGGAGGGAG 57.994 40.000 0.00 0.00 0.00 4.30
2387 4490 6.294899 CGACTTATATTTATGGAACGGAGGGA 60.295 42.308 0.00 0.00 0.00 4.20
2388 4491 5.867716 CGACTTATATTTATGGAACGGAGGG 59.132 44.000 0.00 0.00 0.00 4.30
2389 4492 6.453092 ACGACTTATATTTATGGAACGGAGG 58.547 40.000 0.00 0.00 0.00 4.30
2390 4493 7.095774 CCAACGACTTATATTTATGGAACGGAG 60.096 40.741 0.00 0.00 0.00 4.63
2391 4494 6.702723 CCAACGACTTATATTTATGGAACGGA 59.297 38.462 0.00 0.00 0.00 4.69
2392 4495 6.073440 CCCAACGACTTATATTTATGGAACGG 60.073 42.308 0.00 0.00 0.00 4.44
2393 4496 6.073440 CCCCAACGACTTATATTTATGGAACG 60.073 42.308 0.00 0.00 0.00 3.95
2394 4497 6.206048 CCCCCAACGACTTATATTTATGGAAC 59.794 42.308 0.00 0.00 0.00 3.62
2395 4498 6.101442 TCCCCCAACGACTTATATTTATGGAA 59.899 38.462 0.00 0.00 0.00 3.53
2396 4499 5.607592 TCCCCCAACGACTTATATTTATGGA 59.392 40.000 0.00 0.00 0.00 3.41
2397 4500 5.871834 TCCCCCAACGACTTATATTTATGG 58.128 41.667 0.00 0.00 0.00 2.74
2398 4501 6.426937 CACTCCCCCAACGACTTATATTTATG 59.573 42.308 0.00 0.00 0.00 1.90
2399 4502 6.100714 ACACTCCCCCAACGACTTATATTTAT 59.899 38.462 0.00 0.00 0.00 1.40
2400 4503 5.426185 ACACTCCCCCAACGACTTATATTTA 59.574 40.000 0.00 0.00 0.00 1.40
2401 4504 4.226620 ACACTCCCCCAACGACTTATATTT 59.773 41.667 0.00 0.00 0.00 1.40
2402 4505 3.778629 ACACTCCCCCAACGACTTATATT 59.221 43.478 0.00 0.00 0.00 1.28
2403 4506 3.381335 ACACTCCCCCAACGACTTATAT 58.619 45.455 0.00 0.00 0.00 0.86
2404 4507 2.823959 ACACTCCCCCAACGACTTATA 58.176 47.619 0.00 0.00 0.00 0.98
2405 4508 1.652947 ACACTCCCCCAACGACTTAT 58.347 50.000 0.00 0.00 0.00 1.73
2406 4509 2.307496 TACACTCCCCCAACGACTTA 57.693 50.000 0.00 0.00 0.00 2.24
2407 4510 1.426751 TTACACTCCCCCAACGACTT 58.573 50.000 0.00 0.00 0.00 3.01
2408 4511 1.071228 GTTTACACTCCCCCAACGACT 59.929 52.381 0.00 0.00 0.00 4.18
2409 4512 1.071228 AGTTTACACTCCCCCAACGAC 59.929 52.381 0.00 0.00 0.00 4.34
2410 4513 1.071071 CAGTTTACACTCCCCCAACGA 59.929 52.381 0.00 0.00 0.00 3.85
2411 4514 1.071071 TCAGTTTACACTCCCCCAACG 59.929 52.381 0.00 0.00 0.00 4.10
2412 4515 2.882761 GTTCAGTTTACACTCCCCCAAC 59.117 50.000 0.00 0.00 0.00 3.77
2413 4516 2.781174 AGTTCAGTTTACACTCCCCCAA 59.219 45.455 0.00 0.00 0.00 4.12
2414 4517 2.370849 GAGTTCAGTTTACACTCCCCCA 59.629 50.000 0.00 0.00 32.26 4.96
2415 4518 3.055209 GAGTTCAGTTTACACTCCCCC 57.945 52.381 0.00 0.00 32.26 5.40
2419 4522 2.370849 TGGGGGAGTTCAGTTTACACTC 59.629 50.000 0.00 0.00 36.91 3.51
2420 4523 2.372172 CTGGGGGAGTTCAGTTTACACT 59.628 50.000 0.00 0.00 0.00 3.55
2421 4524 2.779506 CTGGGGGAGTTCAGTTTACAC 58.220 52.381 0.00 0.00 0.00 2.90
2422 4525 1.073284 GCTGGGGGAGTTCAGTTTACA 59.927 52.381 0.00 0.00 33.81 2.41
2423 4526 1.822506 GCTGGGGGAGTTCAGTTTAC 58.177 55.000 0.00 0.00 33.81 2.01
2424 4527 0.323629 CGCTGGGGGAGTTCAGTTTA 59.676 55.000 0.00 0.00 33.81 2.01
2425 4528 1.073199 CGCTGGGGGAGTTCAGTTT 59.927 57.895 0.00 0.00 33.81 2.66
2426 4529 1.841556 TCGCTGGGGGAGTTCAGTT 60.842 57.895 0.00 0.00 33.81 3.16
2427 4530 2.203788 TCGCTGGGGGAGTTCAGT 60.204 61.111 0.00 0.00 33.81 3.41
2428 4531 1.831652 AAGTCGCTGGGGGAGTTCAG 61.832 60.000 0.00 0.00 33.86 3.02
2429 4532 0.543410 TAAGTCGCTGGGGGAGTTCA 60.543 55.000 7.72 0.00 38.67 3.18
2430 4533 0.831307 ATAAGTCGCTGGGGGAGTTC 59.169 55.000 7.72 0.00 38.67 3.01
2431 4534 2.170012 TATAAGTCGCTGGGGGAGTT 57.830 50.000 9.08 9.08 40.39 3.01
2432 4535 2.400467 ATATAAGTCGCTGGGGGAGT 57.600 50.000 0.00 0.00 0.00 3.85
2433 4536 3.665190 GAAATATAAGTCGCTGGGGGAG 58.335 50.000 0.00 0.00 0.00 4.30
2434 4537 2.036733 CGAAATATAAGTCGCTGGGGGA 59.963 50.000 0.00 0.00 0.00 4.81
2435 4538 2.413837 CGAAATATAAGTCGCTGGGGG 58.586 52.381 0.00 0.00 0.00 5.40
2436 4539 2.036733 TCCGAAATATAAGTCGCTGGGG 59.963 50.000 3.51 0.00 35.93 4.96
2437 4540 3.380479 TCCGAAATATAAGTCGCTGGG 57.620 47.619 3.51 0.00 35.93 4.45
2438 4541 4.116961 TGTTCCGAAATATAAGTCGCTGG 58.883 43.478 3.51 0.00 35.93 4.85
2439 4542 5.041287 TCTGTTCCGAAATATAAGTCGCTG 58.959 41.667 3.51 0.00 35.93 5.18
2440 4543 5.258456 TCTGTTCCGAAATATAAGTCGCT 57.742 39.130 3.51 0.00 35.93 4.93
2441 4544 4.444720 CCTCTGTTCCGAAATATAAGTCGC 59.555 45.833 3.51 0.00 35.93 5.19
2442 4545 5.589192 ACCTCTGTTCCGAAATATAAGTCG 58.411 41.667 2.29 2.29 37.01 4.18
2448 4551 9.090103 TGATCTATTACCTCTGTTCCGAAATAT 57.910 33.333 0.00 0.00 0.00 1.28
2449 4552 8.473358 TGATCTATTACCTCTGTTCCGAAATA 57.527 34.615 0.00 0.00 0.00 1.40
2450 4553 7.287927 TCTGATCTATTACCTCTGTTCCGAAAT 59.712 37.037 0.00 0.00 0.00 2.17
2451 4554 6.605995 TCTGATCTATTACCTCTGTTCCGAAA 59.394 38.462 0.00 0.00 0.00 3.46
2452 4555 6.127101 TCTGATCTATTACCTCTGTTCCGAA 58.873 40.000 0.00 0.00 0.00 4.30
2453 4556 5.691896 TCTGATCTATTACCTCTGTTCCGA 58.308 41.667 0.00 0.00 0.00 4.55
2454 4557 6.392625 TTCTGATCTATTACCTCTGTTCCG 57.607 41.667 0.00 0.00 0.00 4.30
2455 4558 6.551601 TCCTTCTGATCTATTACCTCTGTTCC 59.448 42.308 0.00 0.00 0.00 3.62
2456 4559 7.589958 TCCTTCTGATCTATTACCTCTGTTC 57.410 40.000 0.00 0.00 0.00 3.18
2457 4560 7.472663 GCATCCTTCTGATCTATTACCTCTGTT 60.473 40.741 0.00 0.00 0.00 3.16
2458 4561 6.014669 GCATCCTTCTGATCTATTACCTCTGT 60.015 42.308 0.00 0.00 0.00 3.41
2459 4562 6.014755 TGCATCCTTCTGATCTATTACCTCTG 60.015 42.308 0.00 0.00 0.00 3.35
2460 4563 6.080682 TGCATCCTTCTGATCTATTACCTCT 58.919 40.000 0.00 0.00 0.00 3.69
2461 4564 6.352016 TGCATCCTTCTGATCTATTACCTC 57.648 41.667 0.00 0.00 0.00 3.85
2462 4565 6.753913 TTGCATCCTTCTGATCTATTACCT 57.246 37.500 0.00 0.00 0.00 3.08
2463 4566 7.574592 GCATTTGCATCCTTCTGATCTATTACC 60.575 40.741 0.00 0.00 41.59 2.85
2464 4567 7.303998 GCATTTGCATCCTTCTGATCTATTAC 58.696 38.462 0.00 0.00 41.59 1.89
2465 4568 7.444629 GCATTTGCATCCTTCTGATCTATTA 57.555 36.000 0.00 0.00 41.59 0.98
2466 4569 6.328641 GCATTTGCATCCTTCTGATCTATT 57.671 37.500 0.00 0.00 41.59 1.73
2492 4595 1.910671 GGGTGGACTGGTATGGTGTTA 59.089 52.381 0.00 0.00 0.00 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.