Multiple sequence alignment - TraesCS2D01G152000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G152000 chr2D 100.000 4011 0 0 1 4011 95412602 95416612 0.000000e+00 7408.0
1 TraesCS2D01G152000 chr2D 85.316 395 23 10 996 1356 185006496 185006103 3.780000e-100 375.0
2 TraesCS2D01G152000 chr2A 89.525 3456 213 59 1 3355 93929238 93932645 0.000000e+00 4239.0
3 TraesCS2D01G152000 chr2A 89.354 263 19 6 3433 3687 606519062 606519323 5.000000e-84 322.0
4 TraesCS2D01G152000 chr2A 89.394 264 17 8 3433 3687 699241115 699240854 5.000000e-84 322.0
5 TraesCS2D01G152000 chr2A 91.304 115 9 1 3683 3797 93933956 93934069 5.370000e-34 156.0
6 TraesCS2D01G152000 chr2A 86.364 132 15 3 3794 3923 93934281 93934411 1.500000e-29 141.0
7 TraesCS2D01G152000 chr2A 91.549 71 2 2 3347 3413 93933884 93933954 1.190000e-15 95.3
8 TraesCS2D01G152000 chr2B 88.915 3464 234 79 1 3355 146903550 146906972 0.000000e+00 4132.0
9 TraesCS2D01G152000 chr2B 91.579 95 7 1 3343 3436 146907879 146907973 3.250000e-26 130.0
10 TraesCS2D01G152000 chr2B 96.970 66 2 0 3938 4003 600792525 600792590 1.180000e-20 111.0
11 TraesCS2D01G152000 chr2B 90.196 51 4 1 2226 2275 146905994 146906044 9.300000e-07 65.8
12 TraesCS2D01G152000 chr4B 89.354 263 19 6 3434 3688 22857357 22857618 5.000000e-84 322.0
13 TraesCS2D01G152000 chr7A 88.931 262 19 6 3434 3687 515222311 515222570 8.370000e-82 315.0
14 TraesCS2D01G152000 chr7A 87.273 275 23 9 3423 3687 232743793 232744065 1.810000e-78 303.0
15 TraesCS2D01G152000 chr5A 88.636 264 21 8 3432 3687 512225985 512225723 3.010000e-81 313.0
16 TraesCS2D01G152000 chr6A 88.593 263 19 8 3434 3687 36403866 36403606 3.890000e-80 309.0
17 TraesCS2D01G152000 chr1A 88.550 262 21 6 3434 3687 451735974 451735714 3.890000e-80 309.0
18 TraesCS2D01G152000 chr1A 95.385 65 1 2 3941 4004 520805757 520805694 7.090000e-18 102.0
19 TraesCS2D01G152000 chr5D 88.258 264 22 6 3433 3688 279292870 279293132 1.400000e-79 307.0
20 TraesCS2D01G152000 chr5D 94.030 67 4 0 3938 4004 416422267 416422333 7.090000e-18 102.0
21 TraesCS2D01G152000 chr7B 95.522 67 3 0 3938 4004 508189382 508189448 1.520000e-19 108.0
22 TraesCS2D01G152000 chr6D 96.923 65 1 1 3941 4004 59626115 59626179 1.520000e-19 108.0
23 TraesCS2D01G152000 chr3B 96.875 64 2 0 3941 4004 298711728 298711791 1.520000e-19 108.0
24 TraesCS2D01G152000 chr3B 96.875 64 2 0 3941 4004 616774395 616774458 1.520000e-19 108.0
25 TraesCS2D01G152000 chr3B 92.958 71 5 0 3941 4011 119469106 119469036 1.970000e-18 104.0
26 TraesCS2D01G152000 chr3B 81.707 82 11 4 3686 3765 672532593 672532672 9.300000e-07 65.8
27 TraesCS2D01G152000 chr3D 95.312 64 3 0 3941 4004 126955115 126955178 7.090000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G152000 chr2D 95412602 95416612 4010 False 7408.000 7408 100.0000 1 4011 1 chr2D.!!$F1 4010
1 TraesCS2D01G152000 chr2A 93929238 93934411 5173 False 1157.825 4239 89.6855 1 3923 4 chr2A.!!$F2 3922
2 TraesCS2D01G152000 chr2B 146903550 146907973 4423 False 1442.600 4132 90.2300 1 3436 3 chr2B.!!$F2 3435

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
128 129 0.039618 CCCCTGTTACCACTGGCATT 59.960 55.000 0.00 0.0 40.05 3.56 F
1188 1216 0.105039 CGTCTGCCCAGGTAAGATCC 59.895 60.000 0.00 0.0 0.00 3.36 F
1356 1401 0.251634 CCAAGACTGAAGCTCCCCTC 59.748 60.000 0.00 0.0 0.00 4.30 F
1400 1446 0.319383 CTTGAGCTCACTCTGTGCGT 60.319 55.000 18.03 0.0 43.85 5.24 F
2607 2691 1.074167 AGGAGGCTATGGGGGTGAG 60.074 63.158 0.00 0.0 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1392 1438 0.035317 AGGAAGATTGCACGCACAGA 59.965 50.0 0.00 0.00 0.00 3.41 R
2012 2061 0.774276 TGACCTTGCACCACCCAATA 59.226 50.0 0.00 0.00 0.00 1.90 R
2740 2826 0.814010 ACACGGACTTGAGTTGTGGC 60.814 55.0 16.58 0.00 38.32 5.01 R
2741 2827 1.217882 GACACGGACTTGAGTTGTGG 58.782 55.0 16.58 4.90 38.32 4.17 R
3838 5461 0.610687 TCACATACATGCCGTGGTGA 59.389 50.0 9.19 6.17 39.49 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 5.178797 GCTTTCTCAAACCTAGCACTGATA 58.821 41.667 0.00 0.00 0.00 2.15
56 57 6.139048 TCAGAACAATCGTCGATAATGGTA 57.861 37.500 8.43 0.00 0.00 3.25
99 100 2.615465 CCTGACCTCCCATTGCCCA 61.615 63.158 0.00 0.00 0.00 5.36
117 118 1.697432 CCACTGAACACTCCCCTGTTA 59.303 52.381 0.00 0.00 34.40 2.41
128 129 0.039618 CCCCTGTTACCACTGGCATT 59.960 55.000 0.00 0.00 40.05 3.56
129 130 1.463674 CCCTGTTACCACTGGCATTC 58.536 55.000 0.00 0.00 40.05 2.67
143 144 0.741221 GCATTCCACAGTCCTCGTCC 60.741 60.000 0.00 0.00 0.00 4.79
152 153 1.064803 CAGTCCTCGTCCTCTTCATCG 59.935 57.143 0.00 0.00 0.00 3.84
167 168 4.931601 TCTTCATCGTCAAAGATGGACAAG 59.068 41.667 7.06 4.47 45.88 3.16
197 198 2.606725 CAGCGAGTCATCTTCCATGAAC 59.393 50.000 0.00 0.00 0.00 3.18
233 234 1.750399 CTCCGCCCATGGAACCTTG 60.750 63.158 15.22 0.00 37.64 3.61
363 366 6.035327 ACAAAATTACTATCGACGCAACCTAC 59.965 38.462 0.00 0.00 0.00 3.18
365 368 2.846039 ACTATCGACGCAACCTACAG 57.154 50.000 0.00 0.00 0.00 2.74
378 381 5.985530 CGCAACCTACAGATCAATCATAAGA 59.014 40.000 0.00 0.00 0.00 2.10
388 391 9.722184 ACAGATCAATCATAAGATCCATAAGTG 57.278 33.333 0.00 0.00 41.16 3.16
390 393 9.941325 AGATCAATCATAAGATCCATAAGTGAC 57.059 33.333 0.00 0.00 41.16 3.67
403 406 0.877071 AAGTGACGGAATGCAGCAAG 59.123 50.000 0.00 0.00 0.00 4.01
414 417 2.908817 GCAGCAAGCAAGCACAAAT 58.091 47.368 3.19 0.00 44.79 2.32
433 436 7.520686 CACAAATTTCACCAAAATTGCTATCC 58.479 34.615 0.00 0.00 44.88 2.59
493 496 3.159472 ACACTGGTAACCTCATACGACA 58.841 45.455 0.00 0.00 0.00 4.35
507 511 5.672051 TCATACGACAACAAAAGTTTAGCG 58.328 37.500 0.00 0.00 0.00 4.26
539 543 3.722123 CTTCAAACTGTGCGTATTCGAC 58.278 45.455 0.00 0.00 39.71 4.20
610 617 1.079750 GAGGAGACGCACCTTGGAC 60.080 63.158 0.00 0.00 37.93 4.02
613 620 2.915659 AGACGCACCTTGGACCGA 60.916 61.111 9.67 0.00 0.00 4.69
692 699 1.071642 TGGAAATCGAACCCGTGCA 59.928 52.632 0.00 0.00 37.05 4.57
819 826 3.075641 GTCGTCCCACCCCTCCTC 61.076 72.222 0.00 0.00 0.00 3.71
1045 1058 3.815962 CCGTGATATCCGAAAGAGAGAGA 59.184 47.826 13.18 0.00 0.00 3.10
1128 1142 3.839432 CCTTCGTCTCGCCCCCTC 61.839 72.222 0.00 0.00 0.00 4.30
1188 1216 0.105039 CGTCTGCCCAGGTAAGATCC 59.895 60.000 0.00 0.00 0.00 3.36
1194 1222 1.977202 GCCCAGGTAAGATCCCCTCTT 60.977 57.143 0.00 0.00 46.16 2.85
1233 1278 4.840288 CACCGTCGCGCCGATGTA 62.840 66.667 12.69 0.00 40.74 2.29
1239 1284 1.226859 TCGCGCCGATGTAAGGAAG 60.227 57.895 0.00 0.00 0.00 3.46
1241 1286 0.804544 CGCGCCGATGTAAGGAAGAA 60.805 55.000 0.00 0.00 0.00 2.52
1303 1348 2.664851 CTGCGTTGGTTCGGCTCA 60.665 61.111 0.00 0.00 0.00 4.26
1356 1401 0.251634 CCAAGACTGAAGCTCCCCTC 59.748 60.000 0.00 0.00 0.00 4.30
1362 1407 0.322008 CTGAAGCTCCCCTCAACCAC 60.322 60.000 0.00 0.00 0.00 4.16
1365 1410 0.768221 AAGCTCCCCTCAACCACAGA 60.768 55.000 0.00 0.00 0.00 3.41
1373 1418 2.279851 CAACCACAGACCGCGTGA 60.280 61.111 4.92 0.00 36.43 4.35
1391 1437 3.123621 CGTGAATACAACCTTGAGCTCAC 59.876 47.826 18.03 0.89 33.87 3.51
1392 1438 4.319177 GTGAATACAACCTTGAGCTCACT 58.681 43.478 18.03 0.00 34.12 3.41
1400 1446 0.319383 CTTGAGCTCACTCTGTGCGT 60.319 55.000 18.03 0.00 43.85 5.24
1403 1449 2.662857 GCTCACTCTGTGCGTGCA 60.663 61.111 0.00 0.00 32.98 4.57
1555 1601 1.920835 GGAAGGGCTGGACAGGAGT 60.921 63.158 1.01 0.00 0.00 3.85
1766 1812 5.587043 AGGTTTGTTCGTGTTGTGAAATCTA 59.413 36.000 0.00 0.00 0.00 1.98
1767 1813 6.262273 AGGTTTGTTCGTGTTGTGAAATCTAT 59.738 34.615 0.00 0.00 0.00 1.98
1768 1814 6.577427 GGTTTGTTCGTGTTGTGAAATCTATC 59.423 38.462 0.00 0.00 0.00 2.08
1769 1815 7.352739 GTTTGTTCGTGTTGTGAAATCTATCT 58.647 34.615 0.00 0.00 0.00 1.98
1815 1861 8.137437 GTGATTCAGGTTGAAAAGAATTCTTGA 58.863 33.333 21.15 9.52 40.12 3.02
1818 1864 8.746052 TTCAGGTTGAAAAGAATTCTTGAGTA 57.254 30.769 21.15 6.10 36.12 2.59
1823 1869 8.286097 GGTTGAAAAGAATTCTTGAGTAGTGAG 58.714 37.037 21.15 0.00 36.12 3.51
1839 1885 7.281100 TGAGTAGTGAGTACATGATCTGTAGTG 59.719 40.741 13.87 1.09 42.79 2.74
1912 1961 3.854666 TGTTTGTTGGGTTTGTCATGTG 58.145 40.909 0.00 0.00 0.00 3.21
1928 1977 4.022935 GTCATGTGCAGAAGTTTGATGGAA 60.023 41.667 0.00 0.00 0.00 3.53
2012 2061 3.988976 TCAGCTGCTAAAGGACTTGAT 57.011 42.857 9.47 0.00 0.00 2.57
2208 2276 4.982241 TGCTCCTAATTCTTCCTATGGG 57.018 45.455 0.00 0.00 0.00 4.00
2214 2282 6.900194 TCCTAATTCTTCCTATGGGTTCAAG 58.100 40.000 0.00 0.00 0.00 3.02
2245 2314 7.984391 TGATATTTAGGTTATGTGTGCTTGTG 58.016 34.615 0.00 0.00 0.00 3.33
2278 2347 3.797451 TGCTTTTGTGCATTTGAGTCA 57.203 38.095 0.00 0.00 38.12 3.41
2554 2638 8.557029 CAGGTTATCCGAAATTCTTAATGGTAC 58.443 37.037 0.00 0.00 39.05 3.34
2607 2691 1.074167 AGGAGGCTATGGGGGTGAG 60.074 63.158 0.00 0.00 0.00 3.51
2658 2742 2.679837 AGTTGCTGAGCATTACCATTCG 59.320 45.455 8.44 0.00 38.76 3.34
2669 2753 2.684001 TACCATTCGCTCCGTGATTT 57.316 45.000 0.00 0.00 0.00 2.17
2716 2802 4.591321 AAAGATTTCTGACATAGGGCCA 57.409 40.909 6.18 0.00 0.00 5.36
2717 2803 4.803329 AAGATTTCTGACATAGGGCCAT 57.197 40.909 6.18 0.00 0.00 4.40
2720 2806 2.057137 TTCTGACATAGGGCCATTGC 57.943 50.000 6.18 0.04 0.00 3.56
2733 2819 1.816074 CCATTGCATTTGCTTTGCCT 58.184 45.000 3.94 0.00 42.66 4.75
2735 2821 2.614481 CCATTGCATTTGCTTTGCCTCT 60.614 45.455 3.94 0.00 42.66 3.69
2740 2826 2.224784 GCATTTGCTTTGCCTCTTTTGG 59.775 45.455 0.00 0.00 38.21 3.28
2741 2827 5.442010 GCATTTGCTTTGCCTCTTTTGGC 62.442 47.826 0.00 0.00 44.72 4.52
2751 2837 2.031120 CCTCTTTTGGCCACAACTCAA 58.969 47.619 3.88 0.00 36.06 3.02
2756 2843 0.817634 TTGGCCACAACTCAAGTCCG 60.818 55.000 3.88 0.00 0.00 4.79
2760 2847 1.217882 CCACAACTCAAGTCCGTGTC 58.782 55.000 10.18 0.00 32.59 3.67
2762 2849 1.593006 CACAACTCAAGTCCGTGTCAC 59.407 52.381 0.00 0.00 30.96 3.67
2768 2855 3.503363 ACTCAAGTCCGTGTCACGTATAA 59.497 43.478 23.01 4.00 40.58 0.98
2769 2856 4.087510 TCAAGTCCGTGTCACGTATAAG 57.912 45.455 23.01 8.29 40.58 1.73
2779 2866 4.157289 GTGTCACGTATAAGGTCAAGGAGA 59.843 45.833 0.00 0.00 0.00 3.71
2782 2869 4.341235 TCACGTATAAGGTCAAGGAGATGG 59.659 45.833 0.00 0.00 0.00 3.51
2784 2871 4.585162 ACGTATAAGGTCAAGGAGATGGAG 59.415 45.833 0.00 0.00 0.00 3.86
2788 2875 3.121929 AGGTCAAGGAGATGGAGCTTA 57.878 47.619 0.00 0.00 36.05 3.09
2843 2930 8.156822 AGAGAAGAAAATAATTGAGAGACCCT 57.843 34.615 0.00 0.00 0.00 4.34
2846 2933 4.878397 AGAAAATAATTGAGAGACCCTGCG 59.122 41.667 0.00 0.00 0.00 5.18
2847 2934 4.487714 AAATAATTGAGAGACCCTGCGA 57.512 40.909 0.00 0.00 0.00 5.10
2850 2937 6.365970 AATAATTGAGAGACCCTGCGATAT 57.634 37.500 0.00 0.00 0.00 1.63
2852 2939 4.792521 ATTGAGAGACCCTGCGATATAC 57.207 45.455 0.00 0.00 0.00 1.47
2856 2943 3.417101 AGAGACCCTGCGATATACTCTG 58.583 50.000 0.00 0.00 33.04 3.35
2860 2947 3.296854 ACCCTGCGATATACTCTGTTGA 58.703 45.455 0.00 0.00 0.00 3.18
2863 2950 5.163301 ACCCTGCGATATACTCTGTTGAAAT 60.163 40.000 0.00 0.00 0.00 2.17
2882 2986 7.167924 TGAAATTCAATGGCTTACTGCATTA 57.832 32.000 0.00 0.00 45.15 1.90
2884 2988 4.981806 TTCAATGGCTTACTGCATTACC 57.018 40.909 0.00 0.00 45.15 2.85
2890 2994 3.761752 TGGCTTACTGCATTACCTTTTCC 59.238 43.478 0.00 0.00 45.15 3.13
2891 2995 4.017126 GGCTTACTGCATTACCTTTTCCT 58.983 43.478 0.00 0.00 45.15 3.36
2894 2998 5.673818 GCTTACTGCATTACCTTTTCCTTCG 60.674 44.000 0.00 0.00 42.31 3.79
2953 3057 5.301555 GTGGAAGAACAGCTAAGAGAACTT 58.698 41.667 0.00 0.00 39.81 2.66
2989 3093 1.881973 TCAGAATGCCAAGACAAGCAC 59.118 47.619 0.00 0.00 42.84 4.40
3001 3105 5.245531 CAAGACAAGCACCTTACCAATCTA 58.754 41.667 0.00 0.00 0.00 1.98
3002 3106 5.499004 AGACAAGCACCTTACCAATCTAA 57.501 39.130 0.00 0.00 0.00 2.10
3098 3203 4.941873 TGACTGTTGCTCGTTAGATCTCTA 59.058 41.667 0.00 0.00 0.00 2.43
3099 3204 5.590663 TGACTGTTGCTCGTTAGATCTCTAT 59.409 40.000 0.00 0.00 0.00 1.98
3100 3205 6.766467 TGACTGTTGCTCGTTAGATCTCTATA 59.234 38.462 0.00 0.00 0.00 1.31
3109 3214 8.557864 GCTCGTTAGATCTCTATAAAGTGTGTA 58.442 37.037 0.00 0.00 0.00 2.90
3125 3243 1.885887 GTGTAATTGGCTGTTGCTCCA 59.114 47.619 0.00 0.00 39.59 3.86
3138 3256 6.051717 GCTGTTGCTCCATTAGATCTCTTTA 58.948 40.000 0.00 0.00 36.03 1.85
3140 3258 7.254727 GCTGTTGCTCCATTAGATCTCTTTAAG 60.255 40.741 0.00 0.00 36.03 1.85
3141 3259 7.624549 TGTTGCTCCATTAGATCTCTTTAAGT 58.375 34.615 0.00 0.00 0.00 2.24
3142 3260 7.550551 TGTTGCTCCATTAGATCTCTTTAAGTG 59.449 37.037 0.00 0.00 0.00 3.16
3144 3262 6.384015 TGCTCCATTAGATCTCTTTAAGTGGA 59.616 38.462 0.00 2.37 0.00 4.02
3168 3305 2.877168 GGATGAGATTCAGGCACATCAC 59.123 50.000 0.00 0.00 39.00 3.06
3203 3340 6.691754 TTTATGTGTGTGTGATTGACTGTT 57.308 33.333 0.00 0.00 0.00 3.16
3204 3341 7.793927 TTTATGTGTGTGTGATTGACTGTTA 57.206 32.000 0.00 0.00 0.00 2.41
3205 3342 5.929697 ATGTGTGTGTGATTGACTGTTAG 57.070 39.130 0.00 0.00 0.00 2.34
3214 3351 4.559251 GTGATTGACTGTTAGTACTCAGCG 59.441 45.833 10.67 0.00 35.37 5.18
3263 3400 2.733671 CGACACCTGCGTGCAGATG 61.734 63.158 22.79 18.78 46.30 2.90
3267 3404 2.435410 CCTGCGTGCAGATGCTCA 60.435 61.111 22.79 1.26 46.30 4.26
3276 3413 4.201695 GCGTGCAGATGCTCAATATATCTG 60.202 45.833 6.35 7.73 46.57 2.90
3287 3424 5.049818 GCTCAATATATCTGTGAAGTGGCAC 60.050 44.000 10.29 10.29 39.22 5.01
3291 3428 6.932356 ATATATCTGTGAAGTGGCACTTTG 57.068 37.500 31.60 21.09 38.80 2.77
3298 3435 3.030291 TGAAGTGGCACTTTGTTTCCAT 58.970 40.909 31.60 8.40 38.80 3.41
3302 3439 1.962807 TGGCACTTTGTTTCCATGGAG 59.037 47.619 15.53 4.62 0.00 3.86
3311 3449 8.902806 CACTTTGTTTCCATGGAGCTTATATAA 58.097 33.333 15.53 0.38 0.00 0.98
3314 3452 8.995027 TTGTTTCCATGGAGCTTATATAATGT 57.005 30.769 15.53 0.00 0.00 2.71
3327 3465 8.803235 AGCTTATATAATGTTCTCGTGACCATA 58.197 33.333 0.00 0.00 0.00 2.74
3429 4837 4.855937 CAGTAGCTGCATGTGATCTATACG 59.144 45.833 4.12 0.00 0.00 3.06
3430 4838 3.309961 AGCTGCATGTGATCTATACGG 57.690 47.619 1.02 0.00 0.00 4.02
3450 4858 3.854666 GGAGTACTCCCTCCGTTTTTAC 58.145 50.000 28.87 1.06 43.94 2.01
3451 4859 3.513119 GGAGTACTCCCTCCGTTTTTACT 59.487 47.826 28.87 0.00 43.94 2.24
3452 4860 4.020751 GGAGTACTCCCTCCGTTTTTACTT 60.021 45.833 28.87 0.00 43.94 2.24
3453 4861 5.185828 GGAGTACTCCCTCCGTTTTTACTTA 59.814 44.000 28.87 0.00 43.94 2.24
3454 4862 6.278172 AGTACTCCCTCCGTTTTTACTTAG 57.722 41.667 0.00 0.00 0.00 2.18
3455 4863 5.777223 AGTACTCCCTCCGTTTTTACTTAGT 59.223 40.000 0.00 0.00 0.00 2.24
3456 4864 5.144692 ACTCCCTCCGTTTTTACTTAGTC 57.855 43.478 0.00 0.00 0.00 2.59
3457 4865 4.020751 ACTCCCTCCGTTTTTACTTAGTCC 60.021 45.833 0.00 0.00 0.00 3.85
3458 4866 3.056607 TCCCTCCGTTTTTACTTAGTCCG 60.057 47.826 0.00 0.00 0.00 4.79
3459 4867 2.669924 CCTCCGTTTTTACTTAGTCCGC 59.330 50.000 0.00 0.00 0.00 5.54
3460 4868 2.327568 TCCGTTTTTACTTAGTCCGCG 58.672 47.619 0.00 0.00 0.00 6.46
3461 4869 2.061028 CCGTTTTTACTTAGTCCGCGT 58.939 47.619 4.92 0.00 0.00 6.01
3462 4870 3.057876 TCCGTTTTTACTTAGTCCGCGTA 60.058 43.478 4.92 0.00 0.00 4.42
3463 4871 3.859386 CCGTTTTTACTTAGTCCGCGTAT 59.141 43.478 4.92 0.00 0.00 3.06
3464 4872 4.327087 CCGTTTTTACTTAGTCCGCGTATT 59.673 41.667 4.92 0.00 0.00 1.89
3465 4873 5.514914 CCGTTTTTACTTAGTCCGCGTATTA 59.485 40.000 4.92 0.00 0.00 0.98
3466 4874 6.291269 CCGTTTTTACTTAGTCCGCGTATTAG 60.291 42.308 4.92 0.00 0.00 1.73
3467 4875 6.406018 GTTTTTACTTAGTCCGCGTATTAGC 58.594 40.000 4.92 0.00 0.00 3.09
3468 4876 5.505173 TTTACTTAGTCCGCGTATTAGCT 57.495 39.130 4.92 0.00 34.40 3.32
3469 4877 5.505173 TTACTTAGTCCGCGTATTAGCTT 57.495 39.130 4.92 0.00 34.40 3.74
3470 4878 4.382345 ACTTAGTCCGCGTATTAGCTTT 57.618 40.909 4.92 0.00 34.40 3.51
3471 4879 4.110482 ACTTAGTCCGCGTATTAGCTTTG 58.890 43.478 4.92 0.00 34.40 2.77
3472 4880 1.935933 AGTCCGCGTATTAGCTTTGG 58.064 50.000 4.92 0.00 34.40 3.28
3473 4881 1.206371 AGTCCGCGTATTAGCTTTGGT 59.794 47.619 4.92 0.00 34.40 3.67
3474 4882 1.591619 GTCCGCGTATTAGCTTTGGTC 59.408 52.381 4.92 0.00 34.40 4.02
3475 4883 1.205179 TCCGCGTATTAGCTTTGGTCA 59.795 47.619 4.92 0.00 34.40 4.02
3476 4884 2.004017 CCGCGTATTAGCTTTGGTCAA 58.996 47.619 4.92 0.00 34.40 3.18
3477 4885 2.417239 CCGCGTATTAGCTTTGGTCAAA 59.583 45.455 4.92 0.00 34.40 2.69
3500 4908 8.770438 AAAGTCAAGCTTTGTAAATTTTGACA 57.230 26.923 22.19 4.38 45.00 3.58
3501 4909 8.770438 AAGTCAAGCTTTGTAAATTTTGACAA 57.230 26.923 22.19 9.43 40.17 3.18
3502 4910 8.770438 AGTCAAGCTTTGTAAATTTTGACAAA 57.230 26.923 22.19 15.19 41.90 2.83
3581 4989 8.797350 ATGAATGTTCTTTCACATCATGTAGA 57.203 30.769 0.00 0.00 38.37 2.59
3582 4990 8.797350 TGAATGTTCTTTCACATCATGTAGAT 57.203 30.769 0.00 0.00 36.30 1.98
3583 4991 9.234827 TGAATGTTCTTTCACATCATGTAGATT 57.765 29.630 0.00 0.00 36.30 2.40
3585 4993 9.850628 AATGTTCTTTCACATCATGTAGATTTG 57.149 29.630 0.00 0.00 36.30 2.32
3586 4994 7.307694 TGTTCTTTCACATCATGTAGATTTGC 58.692 34.615 0.00 0.00 34.99 3.68
3587 4995 7.175467 TGTTCTTTCACATCATGTAGATTTGCT 59.825 33.333 0.00 0.00 34.99 3.91
3588 4996 8.668353 GTTCTTTCACATCATGTAGATTTGCTA 58.332 33.333 0.00 0.00 34.99 3.49
3589 4997 8.969260 TCTTTCACATCATGTAGATTTGCTAT 57.031 30.769 0.00 0.00 34.99 2.97
3590 4998 8.833493 TCTTTCACATCATGTAGATTTGCTATG 58.167 33.333 0.00 0.00 34.99 2.23
3591 4999 8.510243 TTTCACATCATGTAGATTTGCTATGT 57.490 30.769 0.00 0.00 34.99 2.29
3592 5000 8.510243 TTCACATCATGTAGATTTGCTATGTT 57.490 30.769 0.00 0.00 34.99 2.71
3593 5001 9.612066 TTCACATCATGTAGATTTGCTATGTTA 57.388 29.630 0.00 0.00 34.99 2.41
3594 5002 9.612066 TCACATCATGTAGATTTGCTATGTTAA 57.388 29.630 0.00 0.00 34.99 2.01
3640 5048 9.974980 ATAAATTTGGTCAAACTTTACGATGTT 57.025 25.926 0.00 0.00 32.51 2.71
3641 5049 8.710835 AAATTTGGTCAAACTTTACGATGTTT 57.289 26.923 0.00 0.00 36.91 2.83
3649 5057 7.363589 CAAACTTTACGATGTTTGTTCAGTC 57.636 36.000 9.56 0.00 44.44 3.51
3650 5058 6.671614 AACTTTACGATGTTTGTTCAGTCA 57.328 33.333 0.00 0.00 0.00 3.41
3651 5059 6.671614 ACTTTACGATGTTTGTTCAGTCAA 57.328 33.333 0.00 0.00 0.00 3.18
3652 5060 6.483687 ACTTTACGATGTTTGTTCAGTCAAC 58.516 36.000 0.00 0.00 35.28 3.18
3653 5061 3.963383 ACGATGTTTGTTCAGTCAACC 57.037 42.857 0.00 0.00 33.51 3.77
3654 5062 3.541632 ACGATGTTTGTTCAGTCAACCT 58.458 40.909 0.00 0.00 33.51 3.50
3655 5063 4.699637 ACGATGTTTGTTCAGTCAACCTA 58.300 39.130 0.00 0.00 33.51 3.08
3656 5064 5.120399 ACGATGTTTGTTCAGTCAACCTAA 58.880 37.500 0.00 0.00 33.51 2.69
3657 5065 5.763204 ACGATGTTTGTTCAGTCAACCTAAT 59.237 36.000 0.00 0.00 33.51 1.73
3658 5066 6.932400 ACGATGTTTGTTCAGTCAACCTAATA 59.068 34.615 0.00 0.00 33.51 0.98
3659 5067 7.095355 ACGATGTTTGTTCAGTCAACCTAATAC 60.095 37.037 0.00 0.00 33.51 1.89
3660 5068 6.533819 TGTTTGTTCAGTCAACCTAATACG 57.466 37.500 0.00 0.00 33.51 3.06
3661 5069 5.049954 TGTTTGTTCAGTCAACCTAATACGC 60.050 40.000 0.00 0.00 33.51 4.42
3662 5070 4.260139 TGTTCAGTCAACCTAATACGCA 57.740 40.909 0.00 0.00 33.51 5.24
3663 5071 4.633175 TGTTCAGTCAACCTAATACGCAA 58.367 39.130 0.00 0.00 33.51 4.85
3664 5072 4.449743 TGTTCAGTCAACCTAATACGCAAC 59.550 41.667 0.00 0.00 33.51 4.17
3665 5073 3.247442 TCAGTCAACCTAATACGCAACG 58.753 45.455 0.00 0.00 0.00 4.10
3666 5074 2.991190 CAGTCAACCTAATACGCAACGT 59.009 45.455 0.00 0.00 44.35 3.99
3667 5075 4.082841 TCAGTCAACCTAATACGCAACGTA 60.083 41.667 1.95 1.95 46.28 3.57
3668 5076 4.622313 CAGTCAACCTAATACGCAACGTAA 59.378 41.667 3.74 0.00 45.39 3.18
3669 5077 5.118971 CAGTCAACCTAATACGCAACGTAAA 59.881 40.000 3.74 0.00 45.39 2.01
3670 5078 5.870978 AGTCAACCTAATACGCAACGTAAAT 59.129 36.000 3.74 0.00 45.39 1.40
3671 5079 7.009448 CAGTCAACCTAATACGCAACGTAAATA 59.991 37.037 3.74 0.83 45.39 1.40
3672 5080 7.545265 AGTCAACCTAATACGCAACGTAAATAA 59.455 33.333 3.74 0.00 45.39 1.40
3673 5081 8.167985 GTCAACCTAATACGCAACGTAAATAAA 58.832 33.333 3.74 0.00 45.39 1.40
3674 5082 8.715998 TCAACCTAATACGCAACGTAAATAAAA 58.284 29.630 3.74 0.00 45.39 1.52
3675 5083 9.327529 CAACCTAATACGCAACGTAAATAAAAA 57.672 29.630 3.74 0.00 45.39 1.94
3676 5084 8.879260 ACCTAATACGCAACGTAAATAAAAAC 57.121 30.769 3.74 0.00 45.39 2.43
3677 5085 7.687757 ACCTAATACGCAACGTAAATAAAAACG 59.312 33.333 3.74 0.00 45.39 3.60
3678 5086 6.835719 AATACGCAACGTAAATAAAAACGG 57.164 33.333 3.74 0.00 45.39 4.44
3679 5087 4.465040 ACGCAACGTAAATAAAAACGGA 57.535 36.364 0.00 0.00 43.25 4.69
3680 5088 4.456914 ACGCAACGTAAATAAAAACGGAG 58.543 39.130 0.00 0.00 43.25 4.63
3681 5089 3.841872 CGCAACGTAAATAAAAACGGAGG 59.158 43.478 0.00 0.00 43.25 4.30
3714 5122 4.536489 AGTAGCTGATCCCCACTACTTTTT 59.464 41.667 0.00 0.00 41.93 1.94
3718 5126 6.122964 AGCTGATCCCCACTACTTTTTATTC 58.877 40.000 0.00 0.00 0.00 1.75
3738 5146 9.571810 TTTATTCATCTCAACATAAACACATGC 57.428 29.630 0.00 0.00 0.00 4.06
3747 5155 5.762825 ACATAAACACATGCCATCTCATC 57.237 39.130 0.00 0.00 0.00 2.92
3752 5160 4.713824 ACACATGCCATCTCATCAAAAG 57.286 40.909 0.00 0.00 0.00 2.27
3762 5170 2.108075 TCTCATCAAAAGCCCACCTCAA 59.892 45.455 0.00 0.00 0.00 3.02
3765 5173 2.151502 TCAAAAGCCCACCTCAACAA 57.848 45.000 0.00 0.00 0.00 2.83
3771 5179 0.819582 GCCCACCTCAACAATGATGG 59.180 55.000 0.00 0.00 36.07 3.51
3786 5194 9.507280 CAACAATGATGGTCATTATTAGTTGAC 57.493 33.333 21.48 0.00 44.60 3.18
3798 5421 8.340757 TCATTATTAGTTGACCCCCATTACTTT 58.659 33.333 0.00 0.00 0.00 2.66
3811 5434 6.546034 CCCCCATTACTTTTATTCGACTCAAT 59.454 38.462 0.00 0.00 0.00 2.57
3820 5443 5.635549 TTATTCGACTCAATATGCACACG 57.364 39.130 0.00 0.00 0.00 4.49
3828 5451 2.210144 AATATGCACACGCCCCACCT 62.210 55.000 0.00 0.00 37.32 4.00
3836 5459 1.002134 ACGCCCCACCTCATCAAAG 60.002 57.895 0.00 0.00 0.00 2.77
3837 5460 2.409870 CGCCCCACCTCATCAAAGC 61.410 63.158 0.00 0.00 0.00 3.51
3838 5461 1.000396 GCCCCACCTCATCAAAGCT 60.000 57.895 0.00 0.00 0.00 3.74
3839 5462 1.034292 GCCCCACCTCATCAAAGCTC 61.034 60.000 0.00 0.00 0.00 4.09
3840 5463 0.329261 CCCCACCTCATCAAAGCTCA 59.671 55.000 0.00 0.00 0.00 4.26
3841 5464 1.457346 CCCACCTCATCAAAGCTCAC 58.543 55.000 0.00 0.00 0.00 3.51
3843 5466 1.271543 CCACCTCATCAAAGCTCACCA 60.272 52.381 0.00 0.00 0.00 4.17
3844 5467 1.808945 CACCTCATCAAAGCTCACCAC 59.191 52.381 0.00 0.00 0.00 4.16
3845 5468 1.081892 CCTCATCAAAGCTCACCACG 58.918 55.000 0.00 0.00 0.00 4.94
3849 5472 0.322816 ATCAAAGCTCACCACGGCAT 60.323 50.000 0.00 0.00 0.00 4.40
3856 5479 1.009078 CTCACCACGGCATGTATGTG 58.991 55.000 0.00 0.84 35.12 3.21
3857 5480 0.610687 TCACCACGGCATGTATGTGA 59.389 50.000 13.41 8.12 38.49 3.58
3905 5529 7.812191 GCAACTTATGTTCAATACAATCCAACA 59.188 33.333 0.00 0.00 40.89 3.33
3953 5577 5.997384 AATATGTATTACTCCCTCCGTCC 57.003 43.478 0.00 0.00 0.00 4.79
3954 5578 2.077687 TGTATTACTCCCTCCGTCCC 57.922 55.000 0.00 0.00 0.00 4.46
3955 5579 1.288633 TGTATTACTCCCTCCGTCCCA 59.711 52.381 0.00 0.00 0.00 4.37
3956 5580 1.962100 GTATTACTCCCTCCGTCCCAG 59.038 57.143 0.00 0.00 0.00 4.45
3957 5581 0.635009 ATTACTCCCTCCGTCCCAGA 59.365 55.000 0.00 0.00 0.00 3.86
3958 5582 0.410663 TTACTCCCTCCGTCCCAGAA 59.589 55.000 0.00 0.00 0.00 3.02
3959 5583 0.635009 TACTCCCTCCGTCCCAGAAT 59.365 55.000 0.00 0.00 0.00 2.40
3960 5584 0.635009 ACTCCCTCCGTCCCAGAATA 59.365 55.000 0.00 0.00 0.00 1.75
3961 5585 1.007963 ACTCCCTCCGTCCCAGAATAA 59.992 52.381 0.00 0.00 0.00 1.40
3962 5586 1.689273 CTCCCTCCGTCCCAGAATAAG 59.311 57.143 0.00 0.00 0.00 1.73
3963 5587 1.007963 TCCCTCCGTCCCAGAATAAGT 59.992 52.381 0.00 0.00 0.00 2.24
3964 5588 1.139058 CCCTCCGTCCCAGAATAAGTG 59.861 57.143 0.00 0.00 0.00 3.16
3965 5589 1.831736 CCTCCGTCCCAGAATAAGTGT 59.168 52.381 0.00 0.00 0.00 3.55
3966 5590 2.159085 CCTCCGTCCCAGAATAAGTGTC 60.159 54.545 0.00 0.00 0.00 3.67
3967 5591 2.761208 CTCCGTCCCAGAATAAGTGTCT 59.239 50.000 0.00 0.00 0.00 3.41
3968 5592 2.758979 TCCGTCCCAGAATAAGTGTCTC 59.241 50.000 0.00 0.00 0.00 3.36
3969 5593 2.496070 CCGTCCCAGAATAAGTGTCTCA 59.504 50.000 0.00 0.00 0.00 3.27
3970 5594 3.056107 CCGTCCCAGAATAAGTGTCTCAA 60.056 47.826 0.00 0.00 0.00 3.02
3971 5595 3.927142 CGTCCCAGAATAAGTGTCTCAAC 59.073 47.826 0.00 0.00 0.00 3.18
3972 5596 4.322049 CGTCCCAGAATAAGTGTCTCAACT 60.322 45.833 0.00 0.00 0.00 3.16
3973 5597 5.552178 GTCCCAGAATAAGTGTCTCAACTT 58.448 41.667 0.00 0.00 42.89 2.66
3974 5598 5.998363 GTCCCAGAATAAGTGTCTCAACTTT 59.002 40.000 0.00 0.00 40.77 2.66
3975 5599 5.997746 TCCCAGAATAAGTGTCTCAACTTTG 59.002 40.000 0.00 0.00 40.77 2.77
3976 5600 5.765182 CCCAGAATAAGTGTCTCAACTTTGT 59.235 40.000 0.00 0.00 40.77 2.83
3977 5601 6.934645 CCCAGAATAAGTGTCTCAACTTTGTA 59.065 38.462 0.00 0.00 40.77 2.41
3978 5602 7.095187 CCCAGAATAAGTGTCTCAACTTTGTAC 60.095 40.741 0.00 0.00 40.77 2.90
3979 5603 7.657761 CCAGAATAAGTGTCTCAACTTTGTACT 59.342 37.037 0.00 0.00 40.77 2.73
3980 5604 9.692749 CAGAATAAGTGTCTCAACTTTGTACTA 57.307 33.333 0.00 0.00 40.77 1.82
3986 5610 9.880157 AAGTGTCTCAACTTTGTACTAAAGTTA 57.120 29.630 23.56 13.47 45.57 2.24
3987 5611 9.530633 AGTGTCTCAACTTTGTACTAAAGTTAG 57.469 33.333 23.56 20.62 45.57 2.34
3988 5612 9.310716 GTGTCTCAACTTTGTACTAAAGTTAGT 57.689 33.333 23.56 8.67 45.57 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 5.601662 ACCATTATCGACGATTGTTCTGAT 58.398 37.500 16.73 0.00 0.00 2.90
56 57 2.582636 ACTGCAGGGGAATGGTCTAAAT 59.417 45.455 19.93 0.00 0.00 1.40
99 100 1.697982 GGTAACAGGGGAGTGTTCAGT 59.302 52.381 0.00 0.00 41.06 3.41
128 129 0.112606 AAGAGGACGAGGACTGTGGA 59.887 55.000 0.00 0.00 0.00 4.02
129 130 0.528470 GAAGAGGACGAGGACTGTGG 59.472 60.000 0.00 0.00 0.00 4.17
143 144 4.498241 TGTCCATCTTTGACGATGAAGAG 58.502 43.478 2.57 0.00 42.63 2.85
152 153 2.351157 GCACAGCTTGTCCATCTTTGAC 60.351 50.000 0.00 0.00 0.00 3.18
197 198 0.886563 AGGACTCGTACCTGAAACCG 59.113 55.000 0.00 0.00 36.30 4.44
233 234 2.095461 GAGATTTCCCAACTTGAGGGC 58.905 52.381 0.00 0.00 46.36 5.19
363 366 9.939802 TCACTTATGGATCTTATGATTGATCTG 57.060 33.333 0.00 0.00 39.09 2.90
365 368 8.867935 CGTCACTTATGGATCTTATGATTGATC 58.132 37.037 0.00 0.00 38.56 2.92
378 381 3.470709 CTGCATTCCGTCACTTATGGAT 58.529 45.455 0.00 0.00 43.08 3.41
387 390 3.266964 GCTTGCTGCATTCCGTCA 58.733 55.556 1.84 0.00 42.31 4.35
403 406 4.612932 TTTTGGTGAAATTTGTGCTTGC 57.387 36.364 0.00 0.00 0.00 4.01
414 417 6.041409 TGACTTGGATAGCAATTTTGGTGAAA 59.959 34.615 5.31 0.00 39.55 2.69
493 496 2.861462 TGCTGCGCTAAACTTTTGTT 57.139 40.000 9.73 0.00 45.94 2.83
522 526 1.459592 GCAGTCGAATACGCACAGTTT 59.540 47.619 0.00 0.00 39.58 2.66
523 527 1.068474 GCAGTCGAATACGCACAGTT 58.932 50.000 0.00 0.00 39.58 3.16
557 561 2.433318 GACCGCGCTGAGCTTCTT 60.433 61.111 5.61 0.00 45.59 2.52
610 617 4.797471 TCAAGCTCATCAATTTTGTTCGG 58.203 39.130 0.00 0.00 0.00 4.30
613 620 5.543714 TGCATCAAGCTCATCAATTTTGTT 58.456 33.333 0.00 0.00 45.94 2.83
814 821 2.612251 GAGGAGGAGGGGGAGGAG 59.388 72.222 0.00 0.00 0.00 3.69
819 826 3.039526 AGGAGGAGGAGGAGGGGG 61.040 72.222 0.00 0.00 0.00 5.40
923 930 1.004745 TCCCTCCACCAAGAAGCAATC 59.995 52.381 0.00 0.00 0.00 2.67
993 1001 0.738975 TCACTAGCCTCATTCGTCCG 59.261 55.000 0.00 0.00 0.00 4.79
1070 1083 2.898705 GACTCGGGTCTTCTCTACGTA 58.101 52.381 8.58 0.00 39.24 3.57
1173 1190 0.694444 GAGGGGATCTTACCTGGGCA 60.694 60.000 8.54 0.00 37.18 5.36
1188 1216 2.615391 GGGGAAGAGGAGATAAGAGGG 58.385 57.143 0.00 0.00 0.00 4.30
1226 1271 4.188247 TCAGTGTTCTTCCTTACATCGG 57.812 45.455 0.00 0.00 0.00 4.18
1230 1275 5.422331 CCCTCTATCAGTGTTCTTCCTTACA 59.578 44.000 0.00 0.00 0.00 2.41
1233 1278 3.198853 GCCCTCTATCAGTGTTCTTCCTT 59.801 47.826 0.00 0.00 0.00 3.36
1239 1284 1.112113 TCCGCCCTCTATCAGTGTTC 58.888 55.000 0.00 0.00 0.00 3.18
1241 1286 1.689273 GATTCCGCCCTCTATCAGTGT 59.311 52.381 0.00 0.00 0.00 3.55
1303 1348 1.915769 AAGAAGCTGCTCTCCCGGT 60.916 57.895 1.00 0.00 0.00 5.28
1356 1401 1.227999 ATTCACGCGGTCTGTGGTTG 61.228 55.000 12.47 0.00 37.91 3.77
1362 1407 0.719465 GGTTGTATTCACGCGGTCTG 59.281 55.000 12.47 0.00 0.00 3.51
1365 1410 1.153353 CAAGGTTGTATTCACGCGGT 58.847 50.000 12.47 0.00 0.00 5.68
1373 1418 4.040952 ACAGAGTGAGCTCAAGGTTGTATT 59.959 41.667 20.19 0.00 44.00 1.89
1391 1437 0.445436 GGAAGATTGCACGCACAGAG 59.555 55.000 0.00 0.00 0.00 3.35
1392 1438 0.035317 AGGAAGATTGCACGCACAGA 59.965 50.000 0.00 0.00 0.00 3.41
1400 1446 1.078214 CCCTGCGAGGAAGATTGCA 60.078 57.895 4.00 0.00 37.67 4.08
1403 1449 2.592308 GCCCCTGCGAGGAAGATT 59.408 61.111 4.00 0.00 37.67 2.40
1555 1601 2.661537 CACTGCGACGACTTGCCA 60.662 61.111 0.00 0.00 0.00 4.92
1639 1685 3.934391 CTTCCCGACGCTGGTGTCC 62.934 68.421 8.43 0.00 35.40 4.02
1766 1812 3.690475 TCAGATTGCACACACTGAGAT 57.310 42.857 7.06 0.00 35.01 2.75
1767 1813 3.690475 ATCAGATTGCACACACTGAGA 57.310 42.857 13.75 0.00 41.55 3.27
1768 1814 4.329256 CACTATCAGATTGCACACACTGAG 59.671 45.833 13.75 6.79 41.55 3.35
1769 1815 4.021192 TCACTATCAGATTGCACACACTGA 60.021 41.667 11.69 11.69 42.26 3.41
1815 1861 7.066404 CACACTACAGATCATGTACTCACTACT 59.934 40.741 0.00 0.00 43.66 2.57
1818 1864 5.393569 GCACACTACAGATCATGTACTCACT 60.394 44.000 0.00 0.00 43.66 3.41
1823 1869 4.327357 GTGTGCACACTACAGATCATGTAC 59.673 45.833 36.77 9.72 41.17 2.90
1825 1871 3.329386 GTGTGCACACTACAGATCATGT 58.671 45.455 36.77 0.00 43.25 3.21
1868 1917 6.183361 ACAGCTCCATATTCAGAACCATACAT 60.183 38.462 0.00 0.00 0.00 2.29
1912 1961 3.648339 TGCTTTCCATCAAACTTCTGC 57.352 42.857 0.00 0.00 0.00 4.26
1928 1977 2.158608 AGTTCCACCAAGTAGCTTGCTT 60.159 45.455 0.00 0.00 39.85 3.91
2012 2061 0.774276 TGACCTTGCACCACCCAATA 59.226 50.000 0.00 0.00 0.00 1.90
2039 2088 3.632145 CACCTCAAGCTTGTTAAACAGGT 59.368 43.478 25.19 23.92 30.69 4.00
2208 2276 6.759497 ACCTAAATATCAGTTGCCTTGAAC 57.241 37.500 0.00 0.00 0.00 3.18
2214 2282 7.417612 CACACATAACCTAAATATCAGTTGCC 58.582 38.462 0.00 0.00 0.00 4.52
2236 2304 5.404096 CATGAAATAAGCATCACAAGCACA 58.596 37.500 0.00 0.00 0.00 4.57
2237 2305 4.266976 GCATGAAATAAGCATCACAAGCAC 59.733 41.667 0.00 0.00 0.00 4.40
2245 2314 5.349270 TGCACAAAAGCATGAAATAAGCATC 59.651 36.000 0.00 0.00 40.11 3.91
2275 2344 4.080863 ACCCACTATGAGGAACTGAATGAC 60.081 45.833 0.00 0.00 41.55 3.06
2278 2347 4.104086 TCACCCACTATGAGGAACTGAAT 58.896 43.478 0.00 0.00 41.55 2.57
2348 2418 2.417933 GTGCATCACCATCACTGAGTTC 59.582 50.000 0.00 0.00 0.00 3.01
2554 2638 6.563381 GCTTTCTGAAACAGCAAATTCACATG 60.563 38.462 8.76 0.00 32.46 3.21
2607 2691 5.710984 TGGAACTCAACTCTTTCGTATCTC 58.289 41.667 0.00 0.00 0.00 2.75
2658 2742 1.737838 TCCATGTCAAATCACGGAGC 58.262 50.000 0.00 0.00 0.00 4.70
2669 2753 7.227873 TGTTGAATAAGTTACCTTCCATGTCA 58.772 34.615 0.00 0.00 31.89 3.58
2689 2773 6.071952 GCCCTATGTCAGAAATCTTTTGTTGA 60.072 38.462 0.00 0.00 0.00 3.18
2691 2775 5.185828 GGCCCTATGTCAGAAATCTTTTGTT 59.814 40.000 0.00 0.00 0.00 2.83
2698 2784 3.005155 GCAATGGCCCTATGTCAGAAATC 59.995 47.826 0.00 0.00 0.00 2.17
2700 2786 2.291475 TGCAATGGCCCTATGTCAGAAA 60.291 45.455 0.00 0.00 40.13 2.52
2716 2802 3.412237 AAGAGGCAAAGCAAATGCAAT 57.588 38.095 8.28 0.00 45.60 3.56
2717 2803 2.914695 AAGAGGCAAAGCAAATGCAA 57.085 40.000 8.28 0.00 45.60 4.08
2733 2819 2.687935 GACTTGAGTTGTGGCCAAAAGA 59.312 45.455 9.19 0.00 30.94 2.52
2735 2821 1.754226 GGACTTGAGTTGTGGCCAAAA 59.246 47.619 7.24 5.20 30.94 2.44
2740 2826 0.814010 ACACGGACTTGAGTTGTGGC 60.814 55.000 16.58 0.00 38.32 5.01
2741 2827 1.217882 GACACGGACTTGAGTTGTGG 58.782 55.000 16.58 4.90 38.32 4.17
2743 2829 1.801395 CGTGACACGGACTTGAGTTGT 60.801 52.381 20.26 0.00 38.08 3.32
2756 2843 4.157289 TCTCCTTGACCTTATACGTGACAC 59.843 45.833 0.00 0.00 0.00 3.67
2760 2847 4.341235 TCCATCTCCTTGACCTTATACGTG 59.659 45.833 0.00 0.00 0.00 4.49
2762 2849 4.559704 GCTCCATCTCCTTGACCTTATACG 60.560 50.000 0.00 0.00 0.00 3.06
2768 2855 1.963985 AAGCTCCATCTCCTTGACCT 58.036 50.000 0.00 0.00 0.00 3.85
2769 2856 3.914426 TTAAGCTCCATCTCCTTGACC 57.086 47.619 0.00 0.00 0.00 4.02
2788 2875 9.890629 TTCTAGACATGTATATTGCTTCACTTT 57.109 29.630 0.00 0.00 0.00 2.66
2819 2906 7.201688 GCAGGGTCTCTCAATTATTTTCTTCTC 60.202 40.741 0.00 0.00 0.00 2.87
2820 2907 6.601217 GCAGGGTCTCTCAATTATTTTCTTCT 59.399 38.462 0.00 0.00 0.00 2.85
2825 2912 4.843728 TCGCAGGGTCTCTCAATTATTTT 58.156 39.130 0.00 0.00 0.00 1.82
2828 2915 6.665680 AGTATATCGCAGGGTCTCTCAATTAT 59.334 38.462 0.00 0.00 0.00 1.28
2829 2916 6.010850 AGTATATCGCAGGGTCTCTCAATTA 58.989 40.000 0.00 0.00 0.00 1.40
2837 2924 3.231207 ACAGAGTATATCGCAGGGTCT 57.769 47.619 0.00 0.00 0.00 3.85
2838 2925 3.318275 TCAACAGAGTATATCGCAGGGTC 59.682 47.826 0.00 0.00 0.00 4.46
2843 2930 7.841915 TTGAATTTCAACAGAGTATATCGCA 57.158 32.000 7.74 0.00 30.26 5.10
2846 2933 8.844244 AGCCATTGAATTTCAACAGAGTATATC 58.156 33.333 13.80 0.00 39.45 1.63
2847 2934 8.757982 AGCCATTGAATTTCAACAGAGTATAT 57.242 30.769 13.80 0.00 39.45 0.86
2850 2937 6.899393 AAGCCATTGAATTTCAACAGAGTA 57.101 33.333 13.80 0.00 39.45 2.59
2852 2939 6.805271 CAGTAAGCCATTGAATTTCAACAGAG 59.195 38.462 13.80 4.93 39.45 3.35
2856 2943 5.229423 TGCAGTAAGCCATTGAATTTCAAC 58.771 37.500 13.80 2.45 44.83 3.18
2860 2947 6.155049 AGGTAATGCAGTAAGCCATTGAATTT 59.845 34.615 0.00 0.00 44.83 1.82
2863 2950 4.599041 AGGTAATGCAGTAAGCCATTGAA 58.401 39.130 0.00 0.00 44.83 2.69
2890 2994 2.878406 ACCATCAACAACCTTCACGAAG 59.122 45.455 0.00 0.00 38.14 3.79
2891 2995 2.925724 ACCATCAACAACCTTCACGAA 58.074 42.857 0.00 0.00 0.00 3.85
2894 2998 3.643159 GGAACCATCAACAACCTTCAC 57.357 47.619 0.00 0.00 0.00 3.18
2953 3057 4.538746 TTCTGAAATGCAATTCATGGCA 57.461 36.364 17.24 0.00 45.23 4.92
2989 3093 5.661759 ACTCTACCAGGTTAGATTGGTAAGG 59.338 44.000 0.00 3.84 46.30 2.69
3001 3105 1.885163 CGCGGGAACTCTACCAGGTT 61.885 60.000 0.00 0.00 0.00 3.50
3002 3106 2.348888 CGCGGGAACTCTACCAGGT 61.349 63.158 0.00 0.00 0.00 4.00
3098 3203 5.243730 AGCAACAGCCAATTACACACTTTAT 59.756 36.000 0.00 0.00 0.00 1.40
3099 3204 4.582656 AGCAACAGCCAATTACACACTTTA 59.417 37.500 0.00 0.00 0.00 1.85
3100 3205 3.384467 AGCAACAGCCAATTACACACTTT 59.616 39.130 0.00 0.00 0.00 2.66
3109 3214 3.700538 TCTAATGGAGCAACAGCCAATT 58.299 40.909 0.00 0.00 37.78 2.32
3114 3219 4.070630 AGAGATCTAATGGAGCAACAGC 57.929 45.455 0.00 0.00 31.91 4.40
3125 3243 7.979786 TCCAGTCCACTTAAAGAGATCTAAT 57.020 36.000 0.00 0.00 0.00 1.73
3138 3256 3.199508 CCTGAATCTCATCCAGTCCACTT 59.800 47.826 0.00 0.00 0.00 3.16
3140 3258 2.744494 GCCTGAATCTCATCCAGTCCAC 60.744 54.545 0.00 0.00 0.00 4.02
3141 3259 1.487976 GCCTGAATCTCATCCAGTCCA 59.512 52.381 0.00 0.00 0.00 4.02
3142 3260 1.487976 TGCCTGAATCTCATCCAGTCC 59.512 52.381 0.00 0.00 0.00 3.85
3144 3262 1.911357 TGTGCCTGAATCTCATCCAGT 59.089 47.619 0.00 0.00 0.00 4.00
3168 3305 5.243730 ACACACACATAAATGGGGAAAGAAG 59.756 40.000 0.00 0.00 34.87 2.85
3263 3400 5.049818 GTGCCACTTCACAGATATATTGAGC 60.050 44.000 0.00 0.00 36.97 4.26
3267 3404 6.886459 ACAAAGTGCCACTTCACAGATATATT 59.114 34.615 11.11 0.00 37.47 1.28
3276 3413 2.165437 TGGAAACAAAGTGCCACTTCAC 59.835 45.455 11.11 1.37 37.47 3.18
3291 3428 9.289782 AGAACATTATATAAGCTCCATGGAAAC 57.710 33.333 17.00 11.10 0.00 2.78
3298 3435 7.145985 GTCACGAGAACATTATATAAGCTCCA 58.854 38.462 1.02 0.00 0.00 3.86
3314 3452 6.239036 CCAGATTCAGTATATGGTCACGAGAA 60.239 42.308 0.00 0.00 40.16 2.87
3327 3465 2.698855 AAGCACGCCAGATTCAGTAT 57.301 45.000 0.00 0.00 0.00 2.12
3430 4838 4.797800 AGTAAAAACGGAGGGAGTACTC 57.202 45.455 14.87 14.87 36.76 2.59
3436 4844 3.056607 CGGACTAAGTAAAAACGGAGGGA 60.057 47.826 0.00 0.00 0.00 4.20
3437 4845 3.256558 CGGACTAAGTAAAAACGGAGGG 58.743 50.000 0.00 0.00 0.00 4.30
3438 4846 2.669924 GCGGACTAAGTAAAAACGGAGG 59.330 50.000 0.00 0.00 0.00 4.30
3439 4847 2.343544 CGCGGACTAAGTAAAAACGGAG 59.656 50.000 0.00 0.00 0.00 4.63
3440 4848 2.288152 ACGCGGACTAAGTAAAAACGGA 60.288 45.455 12.47 0.00 0.00 4.69
3441 4849 2.061028 ACGCGGACTAAGTAAAAACGG 58.939 47.619 12.47 0.00 0.00 4.44
3442 4850 5.440260 AATACGCGGACTAAGTAAAAACG 57.560 39.130 12.47 0.00 0.00 3.60
3443 4851 6.254373 AGCTAATACGCGGACTAAGTAAAAAC 59.746 38.462 12.47 0.00 34.40 2.43
3444 4852 6.332630 AGCTAATACGCGGACTAAGTAAAAA 58.667 36.000 12.47 0.00 34.40 1.94
3445 4853 5.894807 AGCTAATACGCGGACTAAGTAAAA 58.105 37.500 12.47 0.00 34.40 1.52
3446 4854 5.505173 AGCTAATACGCGGACTAAGTAAA 57.495 39.130 12.47 0.00 34.40 2.01
3447 4855 5.505173 AAGCTAATACGCGGACTAAGTAA 57.495 39.130 12.47 0.00 34.40 2.24
3448 4856 5.276270 CAAAGCTAATACGCGGACTAAGTA 58.724 41.667 12.47 0.00 34.40 2.24
3449 4857 4.110482 CAAAGCTAATACGCGGACTAAGT 58.890 43.478 12.47 0.00 34.40 2.24
3450 4858 3.489785 CCAAAGCTAATACGCGGACTAAG 59.510 47.826 12.47 0.87 34.40 2.18
3451 4859 3.119029 ACCAAAGCTAATACGCGGACTAA 60.119 43.478 12.47 0.00 34.40 2.24
3452 4860 2.428171 ACCAAAGCTAATACGCGGACTA 59.572 45.455 12.47 0.00 34.40 2.59
3453 4861 1.206371 ACCAAAGCTAATACGCGGACT 59.794 47.619 12.47 0.00 34.40 3.85
3454 4862 1.591619 GACCAAAGCTAATACGCGGAC 59.408 52.381 12.47 0.00 34.40 4.79
3455 4863 1.205179 TGACCAAAGCTAATACGCGGA 59.795 47.619 12.47 0.00 34.40 5.54
3456 4864 1.647346 TGACCAAAGCTAATACGCGG 58.353 50.000 12.47 0.00 34.40 6.46
3457 4865 3.670203 CTTTGACCAAAGCTAATACGCG 58.330 45.455 3.53 3.53 40.94 6.01
3476 4884 8.770438 TTGTCAAAATTTACAAAGCTTGACTT 57.230 26.923 20.78 0.00 40.48 3.01
3477 4885 8.770438 TTTGTCAAAATTTACAAAGCTTGACT 57.230 26.923 20.78 0.00 39.88 3.41
3555 4963 9.234827 TCTACATGATGTGAAAGAACATTCATT 57.765 29.630 8.61 0.00 40.87 2.57
3556 4964 8.797350 TCTACATGATGTGAAAGAACATTCAT 57.203 30.769 8.61 0.00 40.87 2.57
3557 4965 8.797350 ATCTACATGATGTGAAAGAACATTCA 57.203 30.769 8.61 0.00 40.87 2.57
3559 4967 9.850628 CAAATCTACATGATGTGAAAGAACATT 57.149 29.630 8.61 0.00 41.79 2.71
3560 4968 7.972277 GCAAATCTACATGATGTGAAAGAACAT 59.028 33.333 8.61 0.00 41.79 2.71
3561 4969 7.175467 AGCAAATCTACATGATGTGAAAGAACA 59.825 33.333 8.61 0.00 41.79 3.18
3562 4970 7.533426 AGCAAATCTACATGATGTGAAAGAAC 58.467 34.615 8.61 0.00 41.79 3.01
3563 4971 7.692460 AGCAAATCTACATGATGTGAAAGAA 57.308 32.000 8.61 0.00 41.79 2.52
3564 4972 8.833493 CATAGCAAATCTACATGATGTGAAAGA 58.167 33.333 8.61 3.57 41.79 2.52
3565 4973 8.618677 ACATAGCAAATCTACATGATGTGAAAG 58.381 33.333 8.61 0.00 41.79 2.62
3566 4974 8.510243 ACATAGCAAATCTACATGATGTGAAA 57.490 30.769 8.61 0.00 41.79 2.69
3567 4975 8.510243 AACATAGCAAATCTACATGATGTGAA 57.490 30.769 8.61 0.00 41.79 3.18
3568 4976 9.612066 TTAACATAGCAAATCTACATGATGTGA 57.388 29.630 8.61 4.35 41.79 3.58
3614 5022 9.974980 AACATCGTAAAGTTTGACCAAATTTAT 57.025 25.926 0.00 0.00 31.37 1.40
3615 5023 9.804758 AAACATCGTAAAGTTTGACCAAATTTA 57.195 25.926 0.00 5.40 36.65 1.40
3616 5024 8.710835 AAACATCGTAAAGTTTGACCAAATTT 57.289 26.923 0.00 0.00 36.65 1.82
3626 5034 7.079182 TGACTGAACAAACATCGTAAAGTTT 57.921 32.000 0.00 0.00 38.40 2.66
3627 5035 6.671614 TGACTGAACAAACATCGTAAAGTT 57.328 33.333 0.00 0.00 0.00 2.66
3628 5036 6.457799 GGTTGACTGAACAAACATCGTAAAGT 60.458 38.462 0.00 0.00 37.41 2.66
3629 5037 5.907391 GGTTGACTGAACAAACATCGTAAAG 59.093 40.000 0.00 0.00 37.41 1.85
3630 5038 5.587043 AGGTTGACTGAACAAACATCGTAAA 59.413 36.000 0.00 0.00 39.60 2.01
3631 5039 5.120399 AGGTTGACTGAACAAACATCGTAA 58.880 37.500 0.00 0.00 39.60 3.18
3632 5040 4.699637 AGGTTGACTGAACAAACATCGTA 58.300 39.130 0.00 0.00 39.60 3.43
3633 5041 3.541632 AGGTTGACTGAACAAACATCGT 58.458 40.909 0.00 0.00 39.60 3.73
3634 5042 5.666969 TTAGGTTGACTGAACAAACATCG 57.333 39.130 0.00 0.00 39.60 3.84
3635 5043 7.234384 CGTATTAGGTTGACTGAACAAACATC 58.766 38.462 0.00 0.00 39.60 3.06
3636 5044 6.348213 GCGTATTAGGTTGACTGAACAAACAT 60.348 38.462 0.00 0.00 39.60 2.71
3637 5045 5.049954 GCGTATTAGGTTGACTGAACAAACA 60.050 40.000 0.00 0.00 39.60 2.83
3638 5046 5.049954 TGCGTATTAGGTTGACTGAACAAAC 60.050 40.000 0.00 0.00 37.69 2.93
3639 5047 5.057819 TGCGTATTAGGTTGACTGAACAAA 58.942 37.500 0.00 0.00 36.12 2.83
3640 5048 4.633175 TGCGTATTAGGTTGACTGAACAA 58.367 39.130 0.00 0.00 36.12 2.83
3641 5049 4.260139 TGCGTATTAGGTTGACTGAACA 57.740 40.909 0.00 0.00 36.12 3.18
3642 5050 4.433805 CGTTGCGTATTAGGTTGACTGAAC 60.434 45.833 0.00 0.00 0.00 3.18
3643 5051 3.676172 CGTTGCGTATTAGGTTGACTGAA 59.324 43.478 0.00 0.00 0.00 3.02
3644 5052 3.247442 CGTTGCGTATTAGGTTGACTGA 58.753 45.455 0.00 0.00 0.00 3.41
3645 5053 2.991190 ACGTTGCGTATTAGGTTGACTG 59.009 45.455 0.00 0.00 38.73 3.51
3646 5054 3.308438 ACGTTGCGTATTAGGTTGACT 57.692 42.857 0.00 0.00 38.73 3.41
3647 5055 5.514059 TTTACGTTGCGTATTAGGTTGAC 57.486 39.130 0.00 0.00 41.97 3.18
3648 5056 7.824704 TTATTTACGTTGCGTATTAGGTTGA 57.175 32.000 0.00 0.00 41.97 3.18
3649 5057 8.877753 TTTTATTTACGTTGCGTATTAGGTTG 57.122 30.769 0.00 0.00 41.97 3.77
3650 5058 9.328721 GTTTTTATTTACGTTGCGTATTAGGTT 57.671 29.630 0.00 0.00 41.97 3.50
3651 5059 7.687757 CGTTTTTATTTACGTTGCGTATTAGGT 59.312 33.333 0.00 0.00 41.97 3.08
3652 5060 7.162385 CCGTTTTTATTTACGTTGCGTATTAGG 59.838 37.037 0.00 0.00 41.97 2.69
3653 5061 7.897291 TCCGTTTTTATTTACGTTGCGTATTAG 59.103 33.333 0.00 0.00 41.97 1.73
3654 5062 7.733608 TCCGTTTTTATTTACGTTGCGTATTA 58.266 30.769 0.00 0.00 41.97 0.98
3655 5063 6.597614 TCCGTTTTTATTTACGTTGCGTATT 58.402 32.000 0.00 0.00 41.97 1.89
3656 5064 6.163159 TCCGTTTTTATTTACGTTGCGTAT 57.837 33.333 0.00 0.00 41.97 3.06
3657 5065 5.389307 CCTCCGTTTTTATTTACGTTGCGTA 60.389 40.000 0.00 0.00 41.54 4.42
3658 5066 4.456914 CTCCGTTTTTATTTACGTTGCGT 58.543 39.130 0.00 0.00 44.35 5.24
3659 5067 3.841872 CCTCCGTTTTTATTTACGTTGCG 59.158 43.478 0.00 0.00 36.09 4.85
3660 5068 4.083377 TCCCTCCGTTTTTATTTACGTTGC 60.083 41.667 0.00 0.00 36.09 4.17
3661 5069 5.179929 ACTCCCTCCGTTTTTATTTACGTTG 59.820 40.000 0.00 0.00 36.09 4.10
3662 5070 5.308014 ACTCCCTCCGTTTTTATTTACGTT 58.692 37.500 0.00 0.00 36.09 3.99
3663 5071 4.898320 ACTCCCTCCGTTTTTATTTACGT 58.102 39.130 0.00 0.00 36.09 3.57
3664 5072 5.291858 GGTACTCCCTCCGTTTTTATTTACG 59.708 44.000 0.00 0.00 37.50 3.18
3665 5073 6.409704 AGGTACTCCCTCCGTTTTTATTTAC 58.590 40.000 0.00 0.00 40.71 2.01
3666 5074 6.625532 AGGTACTCCCTCCGTTTTTATTTA 57.374 37.500 0.00 0.00 40.71 1.40
3667 5075 5.509832 AGGTACTCCCTCCGTTTTTATTT 57.490 39.130 0.00 0.00 40.71 1.40
3668 5076 6.214208 ACTTAGGTACTCCCTCCGTTTTTATT 59.786 38.462 0.00 0.00 44.81 1.40
3669 5077 5.723405 ACTTAGGTACTCCCTCCGTTTTTAT 59.277 40.000 0.00 0.00 44.81 1.40
3670 5078 5.086621 ACTTAGGTACTCCCTCCGTTTTTA 58.913 41.667 0.00 0.00 44.81 1.52
3671 5079 3.906218 ACTTAGGTACTCCCTCCGTTTTT 59.094 43.478 0.00 0.00 44.81 1.94
3672 5080 3.514539 ACTTAGGTACTCCCTCCGTTTT 58.485 45.455 0.00 0.00 44.81 2.43
3673 5081 3.181393 ACTTAGGTACTCCCTCCGTTT 57.819 47.619 0.00 0.00 44.81 3.60
3674 5082 2.915657 ACTTAGGTACTCCCTCCGTT 57.084 50.000 0.00 0.00 44.81 4.44
3675 5083 2.422661 GCTACTTAGGTACTCCCTCCGT 60.423 54.545 0.00 0.00 44.81 4.69
3676 5084 2.158638 AGCTACTTAGGTACTCCCTCCG 60.159 54.545 0.00 0.00 44.81 4.63
3677 5085 3.117587 TCAGCTACTTAGGTACTCCCTCC 60.118 52.174 0.00 0.00 44.81 4.30
3678 5086 4.167652 TCAGCTACTTAGGTACTCCCTC 57.832 50.000 0.00 0.00 44.81 4.30
3680 5088 3.827876 GGATCAGCTACTTAGGTACTCCC 59.172 52.174 0.00 0.00 41.75 4.30
3681 5089 3.827876 GGGATCAGCTACTTAGGTACTCC 59.172 52.174 0.00 6.83 41.75 3.85
3714 5122 7.338957 TGGCATGTGTTTATGTTGAGATGAATA 59.661 33.333 0.00 0.00 0.00 1.75
3718 5126 5.313520 TGGCATGTGTTTATGTTGAGATG 57.686 39.130 0.00 0.00 0.00 2.90
3729 5137 5.471556 TTTTGATGAGATGGCATGTGTTT 57.528 34.783 3.81 0.00 0.00 2.83
3738 5146 1.753073 GGTGGGCTTTTGATGAGATGG 59.247 52.381 0.00 0.00 0.00 3.51
3747 5155 2.364970 TCATTGTTGAGGTGGGCTTTTG 59.635 45.455 0.00 0.00 0.00 2.44
3752 5160 0.819582 CCATCATTGTTGAGGTGGGC 59.180 55.000 0.00 0.00 34.73 5.36
3771 5179 7.287810 AGTAATGGGGGTCAACTAATAATGAC 58.712 38.462 0.00 0.00 44.07 3.06
3786 5194 5.433526 TGAGTCGAATAAAAGTAATGGGGG 58.566 41.667 0.00 0.00 0.00 5.40
3798 5421 4.026062 GCGTGTGCATATTGAGTCGAATAA 60.026 41.667 0.00 0.00 42.15 1.40
3811 5434 3.323758 GAGGTGGGGCGTGTGCATA 62.324 63.158 0.00 0.00 45.35 3.14
3820 5443 1.000396 AGCTTTGATGAGGTGGGGC 60.000 57.895 0.00 0.00 0.00 5.80
3828 5451 0.955428 GCCGTGGTGAGCTTTGATGA 60.955 55.000 0.00 0.00 0.00 2.92
3836 5459 0.744414 ACATACATGCCGTGGTGAGC 60.744 55.000 0.00 0.00 0.00 4.26
3837 5460 1.009078 CACATACATGCCGTGGTGAG 58.991 55.000 0.00 0.00 36.74 3.51
3838 5461 0.610687 TCACATACATGCCGTGGTGA 59.389 50.000 9.19 6.17 39.49 4.02
3839 5462 1.447945 TTCACATACATGCCGTGGTG 58.552 50.000 9.19 4.20 36.25 4.17
3840 5463 2.192664 TTTCACATACATGCCGTGGT 57.807 45.000 9.19 0.00 0.00 4.16
3841 5464 3.057596 ACTTTTTCACATACATGCCGTGG 60.058 43.478 9.19 0.00 0.00 4.94
3843 5466 4.846779 AACTTTTTCACATACATGCCGT 57.153 36.364 0.00 0.00 0.00 5.68
3844 5467 6.199908 TGAAAAACTTTTTCACATACATGCCG 59.800 34.615 20.92 0.00 33.90 5.69
3845 5468 7.475771 TGAAAAACTTTTTCACATACATGCC 57.524 32.000 20.92 0.00 33.90 4.40
3927 5551 9.364653 GGACGGAGGGAGTAATACATATTATAT 57.635 37.037 0.00 0.00 31.50 0.86
3928 5552 7.781693 GGGACGGAGGGAGTAATACATATTATA 59.218 40.741 0.00 0.00 31.50 0.98
3929 5553 6.610425 GGGACGGAGGGAGTAATACATATTAT 59.390 42.308 0.00 0.00 31.50 1.28
3930 5554 5.954150 GGGACGGAGGGAGTAATACATATTA 59.046 44.000 0.00 0.00 0.00 0.98
3931 5555 4.776308 GGGACGGAGGGAGTAATACATATT 59.224 45.833 0.00 0.00 0.00 1.28
3932 5556 4.202749 TGGGACGGAGGGAGTAATACATAT 60.203 45.833 0.00 0.00 0.00 1.78
3933 5557 3.140707 TGGGACGGAGGGAGTAATACATA 59.859 47.826 0.00 0.00 0.00 2.29
3934 5558 2.090943 TGGGACGGAGGGAGTAATACAT 60.091 50.000 0.00 0.00 0.00 2.29
3935 5559 1.288633 TGGGACGGAGGGAGTAATACA 59.711 52.381 0.00 0.00 0.00 2.29
3936 5560 1.962100 CTGGGACGGAGGGAGTAATAC 59.038 57.143 0.00 0.00 36.31 1.89
3937 5561 1.854939 TCTGGGACGGAGGGAGTAATA 59.145 52.381 0.00 0.00 39.80 0.98
3938 5562 0.635009 TCTGGGACGGAGGGAGTAAT 59.365 55.000 0.00 0.00 39.80 1.89
3939 5563 2.089911 TCTGGGACGGAGGGAGTAA 58.910 57.895 0.00 0.00 39.80 2.24
3940 5564 3.845559 TCTGGGACGGAGGGAGTA 58.154 61.111 0.00 0.00 39.80 2.59
3947 5571 2.758979 GAGACACTTATTCTGGGACGGA 59.241 50.000 0.00 0.00 45.11 4.69
3948 5572 2.496070 TGAGACACTTATTCTGGGACGG 59.504 50.000 0.00 0.00 0.00 4.79
3949 5573 3.868757 TGAGACACTTATTCTGGGACG 57.131 47.619 0.00 0.00 0.00 4.79
3950 5574 5.153950 AGTTGAGACACTTATTCTGGGAC 57.846 43.478 0.00 0.00 0.00 4.46
3951 5575 5.825593 AAGTTGAGACACTTATTCTGGGA 57.174 39.130 0.00 0.00 35.10 4.37
3952 5576 5.765182 ACAAAGTTGAGACACTTATTCTGGG 59.235 40.000 0.00 0.00 35.87 4.45
3953 5577 6.867662 ACAAAGTTGAGACACTTATTCTGG 57.132 37.500 0.00 0.00 35.87 3.86
3954 5578 8.594881 AGTACAAAGTTGAGACACTTATTCTG 57.405 34.615 0.00 0.00 35.87 3.02
3959 5583 9.880157 AACTTTAGTACAAAGTTGAGACACTTA 57.120 29.630 23.48 0.00 45.58 2.24
3960 5584 8.788325 AACTTTAGTACAAAGTTGAGACACTT 57.212 30.769 23.48 7.33 45.58 3.16
3961 5585 9.530633 CTAACTTTAGTACAAAGTTGAGACACT 57.469 33.333 27.85 13.98 46.41 3.55
3962 5586 9.310716 ACTAACTTTAGTACAAAGTTGAGACAC 57.689 33.333 27.85 0.00 46.41 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.