Multiple sequence alignment - TraesCS2D01G151600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G151600 chr2D 100.000 3460 0 0 1 3460 95176683 95173224 0.000000e+00 6390
1 TraesCS2D01G151600 chr2D 87.831 1134 120 11 1243 2361 95215843 95214713 0.000000e+00 1314
2 TraesCS2D01G151600 chr2D 89.087 1008 81 12 876 1855 95278997 95277991 0.000000e+00 1225
3 TraesCS2D01G151600 chr2D 89.847 847 78 5 25 867 601985402 601984560 0.000000e+00 1081
4 TraesCS2D01G151600 chr2D 83.355 787 109 12 2020 2801 95277993 95277224 0.000000e+00 708
5 TraesCS2D01G151600 chr2D 95.131 267 10 1 2921 3187 94559694 94559431 5.340000e-113 418
6 TraesCS2D01G151600 chr2D 82.105 475 60 15 2336 2802 95203924 95203467 1.950000e-102 383
7 TraesCS2D01G151600 chr2B 85.337 1630 183 30 1195 2801 146781025 146779429 0.000000e+00 1635
8 TraesCS2D01G151600 chr2B 91.386 267 11 3 2921 3187 146663526 146663272 4.250000e-94 355
9 TraesCS2D01G151600 chr5D 90.566 848 74 4 25 868 499443365 499444210 0.000000e+00 1118
10 TraesCS2D01G151600 chr5D 84.695 771 110 8 99 866 433203186 433202421 0.000000e+00 763
11 TraesCS2D01G151600 chr1A 85.214 771 106 7 99 867 585907677 585908441 0.000000e+00 785
12 TraesCS2D01G151600 chr7A 84.324 791 114 9 79 864 203868978 203869763 0.000000e+00 765
13 TraesCS2D01G151600 chr7A 83.228 793 124 7 79 866 725703123 725702335 0.000000e+00 719
14 TraesCS2D01G151600 chr6D 84.025 795 112 9 79 870 322358960 322359742 0.000000e+00 750
15 TraesCS2D01G151600 chrUn 85.349 703 90 11 130 826 41591237 41590542 0.000000e+00 715
16 TraesCS2D01G151600 chr7D 83.505 776 116 10 99 868 125417963 125418732 0.000000e+00 713
17 TraesCS2D01G151600 chr2A 92.903 310 12 6 2921 3223 92490944 92490638 3.170000e-120 442
18 TraesCS2D01G151600 chr2A 88.776 294 14 7 3185 3460 92490599 92490307 3.310000e-90 342
19 TraesCS2D01G151600 chr6A 73.059 438 98 16 1244 1668 579005434 579005864 1.670000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G151600 chr2D 95173224 95176683 3459 True 6390.0 6390 100.0000 1 3460 1 chr2D.!!$R2 3459
1 TraesCS2D01G151600 chr2D 95214713 95215843 1130 True 1314.0 1314 87.8310 1243 2361 1 chr2D.!!$R4 1118
2 TraesCS2D01G151600 chr2D 601984560 601985402 842 True 1081.0 1081 89.8470 25 867 1 chr2D.!!$R5 842
3 TraesCS2D01G151600 chr2D 95277224 95278997 1773 True 966.5 1225 86.2210 876 2801 2 chr2D.!!$R6 1925
4 TraesCS2D01G151600 chr2B 146779429 146781025 1596 True 1635.0 1635 85.3370 1195 2801 1 chr2B.!!$R2 1606
5 TraesCS2D01G151600 chr5D 499443365 499444210 845 False 1118.0 1118 90.5660 25 868 1 chr5D.!!$F1 843
6 TraesCS2D01G151600 chr5D 433202421 433203186 765 True 763.0 763 84.6950 99 866 1 chr5D.!!$R1 767
7 TraesCS2D01G151600 chr1A 585907677 585908441 764 False 785.0 785 85.2140 99 867 1 chr1A.!!$F1 768
8 TraesCS2D01G151600 chr7A 203868978 203869763 785 False 765.0 765 84.3240 79 864 1 chr7A.!!$F1 785
9 TraesCS2D01G151600 chr7A 725702335 725703123 788 True 719.0 719 83.2280 79 866 1 chr7A.!!$R1 787
10 TraesCS2D01G151600 chr6D 322358960 322359742 782 False 750.0 750 84.0250 79 870 1 chr6D.!!$F1 791
11 TraesCS2D01G151600 chrUn 41590542 41591237 695 True 715.0 715 85.3490 130 826 1 chrUn.!!$R1 696
12 TraesCS2D01G151600 chr7D 125417963 125418732 769 False 713.0 713 83.5050 99 868 1 chr7D.!!$F1 769
13 TraesCS2D01G151600 chr2A 92490307 92490944 637 True 392.0 442 90.8395 2921 3460 2 chr2A.!!$R1 539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
774 792 0.104671 GGTGTTGGCTGTGTGCATTT 59.895 50.0 0.0 0.0 45.15 2.32 F
1789 1844 0.032815 AAACGGGGGAAACATTTGCG 59.967 50.0 0.0 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2173 2229 0.037605 CCCGTTTTGAGCGACTACCT 60.038 55.0 0.00 0.0 0.00 3.08 R
2912 2973 0.033920 TGCATCGGCGATAGAGCATT 59.966 50.0 23.97 0.0 45.35 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.203195 TGCAGCGCAAGGACTTGT 60.203 55.556 11.47 0.00 42.31 3.16
18 19 1.823470 TGCAGCGCAAGGACTTGTT 60.823 52.632 11.47 0.00 42.31 2.83
19 20 1.081840 GCAGCGCAAGGACTTGTTC 60.082 57.895 11.47 5.92 42.31 3.18
20 21 1.576421 CAGCGCAAGGACTTGTTCC 59.424 57.895 11.47 3.10 46.33 3.62
124 129 1.392710 CGGATCTTGGTCGGCCTAGT 61.393 60.000 17.08 4.95 38.50 2.57
216 221 4.890499 TCTTAGGGGAGTTCATCTCTCT 57.110 45.455 0.00 0.00 42.91 3.10
285 290 2.605366 GCTTGACGCAGAGGAATAGTTC 59.395 50.000 0.00 0.00 38.92 3.01
315 320 0.812811 CATCGCATGTAGCTGCTGGT 60.813 55.000 13.43 0.00 42.61 4.00
450 456 4.260743 CGATGGTTATACGTCGTCACCTTA 60.261 45.833 17.59 4.23 43.06 2.69
457 463 3.928727 ACGTCGTCACCTTATTGAAGA 57.071 42.857 0.00 0.00 34.25 2.87
473 479 4.406648 TGAAGACATTGCTCGGATATGT 57.593 40.909 0.00 0.00 35.33 2.29
508 514 5.843019 TTCAGGGTGAAAACCTAGATTCT 57.157 39.130 0.00 0.00 36.32 2.40
532 538 0.616395 TTGACTGGCTGGATCCGGTA 60.616 55.000 21.88 10.53 45.35 4.02
617 623 6.100134 TCCATATGGTGTCTTGAGATGATTGA 59.900 38.462 21.28 0.00 36.34 2.57
653 659 3.326836 TCATGTAGTTTGCCGATCACA 57.673 42.857 0.00 0.00 0.00 3.58
774 792 0.104671 GGTGTTGGCTGTGTGCATTT 59.895 50.000 0.00 0.00 45.15 2.32
793 811 3.569194 TTTAATTATGCAGAGGCCGGA 57.431 42.857 5.05 0.00 40.13 5.14
795 813 2.664402 AATTATGCAGAGGCCGGATT 57.336 45.000 5.05 0.00 40.13 3.01
802 820 0.962356 CAGAGGCCGGATTTGTGCTT 60.962 55.000 5.05 0.00 0.00 3.91
808 826 3.146066 GGCCGGATTTGTGCTTATCATA 58.854 45.455 5.05 0.00 0.00 2.15
893 911 2.480416 CCCTTCGATCGAGAGGAACAAG 60.480 54.545 31.04 19.48 0.00 3.16
906 924 3.545703 AGGAACAAGTCACACTTCTTGG 58.454 45.455 9.21 0.00 43.40 3.61
908 926 1.680338 ACAAGTCACACTTCTTGGGC 58.320 50.000 9.21 0.00 43.40 5.36
929 947 7.534852 TGGGCAATCATTTCCCTATAAATAGT 58.465 34.615 6.66 0.00 40.69 2.12
930 948 8.010105 TGGGCAATCATTTCCCTATAAATAGTT 58.990 33.333 6.66 0.00 40.69 2.24
937 955 8.271458 TCATTTCCCTATAAATAGTTCTGCACA 58.729 33.333 0.00 0.00 0.00 4.57
949 967 1.893808 CTGCACAAGGGCGACAAGT 60.894 57.895 0.00 0.00 36.28 3.16
978 997 4.635765 TGCTACATCAGAATTAGGCAACAC 59.364 41.667 0.00 0.00 41.41 3.32
982 1001 4.460382 ACATCAGAATTAGGCAACACAAGG 59.540 41.667 0.00 0.00 41.41 3.61
1009 1032 6.936222 ATTCGATCGTAGCTATGAACATTC 57.064 37.500 19.27 11.22 0.00 2.67
1078 1101 2.301346 ACAACTCAAGGCTTCAGGTTG 58.699 47.619 23.12 23.12 39.58 3.77
1079 1102 2.301346 CAACTCAAGGCTTCAGGTTGT 58.699 47.619 19.52 4.00 32.27 3.32
1086 1116 5.734720 TCAAGGCTTCAGGTTGTTATCTAG 58.265 41.667 0.00 0.00 0.00 2.43
1091 1121 5.525378 GGCTTCAGGTTGTTATCTAGACATG 59.475 44.000 0.00 0.00 0.00 3.21
1099 1129 7.819900 AGGTTGTTATCTAGACATGAAGAACAC 59.180 37.037 0.00 1.89 0.00 3.32
1115 1145 8.827177 TGAAGAACACGTACTTCTTTCATATT 57.173 30.769 21.17 3.30 41.79 1.28
1116 1146 8.708742 TGAAGAACACGTACTTCTTTCATATTG 58.291 33.333 21.17 0.00 41.79 1.90
1185 1218 4.202245 ACTCTCCGTTGCAGCTATAAAA 57.798 40.909 0.00 0.00 0.00 1.52
1188 1221 5.294552 ACTCTCCGTTGCAGCTATAAAATTC 59.705 40.000 0.00 0.00 0.00 2.17
1193 1226 4.260375 CGTTGCAGCTATAAAATTCGCTCT 60.260 41.667 0.00 0.00 0.00 4.09
1206 1239 3.808466 TTCGCTCTGAGTAGATTGCAT 57.192 42.857 6.53 0.00 31.21 3.96
1211 1244 4.805719 CGCTCTGAGTAGATTGCATTGTAA 59.194 41.667 6.53 0.00 31.21 2.41
1278 1311 0.520847 GCTTTGCTTGAGACTGAGGC 59.479 55.000 0.00 0.00 0.00 4.70
1297 1330 2.035442 GGTGCTTGAGAAGGCCGTC 61.035 63.158 11.15 11.15 0.00 4.79
1298 1331 2.048222 TGCTTGAGAAGGCCGTCG 60.048 61.111 13.29 0.00 0.00 5.12
1357 1393 2.224744 TGCTGTTGATTTAGGGTGCTCA 60.225 45.455 0.00 0.00 0.00 4.26
1381 1417 3.797039 TGGTCAGAACACACTCTTCTTG 58.203 45.455 0.00 0.00 0.00 3.02
1469 1505 5.568392 AGCTCCAGTTCTTTCTCAATGATT 58.432 37.500 0.00 0.00 0.00 2.57
1490 1526 7.004086 TGATTTACCAGGAAATGACTTCAACT 58.996 34.615 0.00 0.00 35.55 3.16
1530 1566 4.561606 CGAACGGTTCAAAGAGTCGATAAT 59.438 41.667 19.91 0.00 0.00 1.28
1534 1570 4.146616 CGGTTCAAAGAGTCGATAATAGCG 59.853 45.833 0.00 0.00 0.00 4.26
1567 1615 6.561519 ACACTGCTACCACCTTTCTATATT 57.438 37.500 0.00 0.00 0.00 1.28
1587 1635 3.166434 TGGGTTACCAGGCACCTG 58.834 61.111 9.87 9.87 43.37 4.00
1633 1681 3.706594 AGAGTTGTCACCTCTTTCACTCA 59.293 43.478 0.00 0.00 35.80 3.41
1638 1686 6.014242 AGTTGTCACCTCTTTCACTCATCATA 60.014 38.462 0.00 0.00 0.00 2.15
1639 1687 5.724328 TGTCACCTCTTTCACTCATCATAC 58.276 41.667 0.00 0.00 0.00 2.39
1756 1804 2.771943 CCAGGTACCTGCTGGATTAGAA 59.228 50.000 32.98 0.00 42.35 2.10
1764 1819 2.368221 CTGCTGGATTAGAAGGAGGGAG 59.632 54.545 0.00 0.00 0.00 4.30
1768 1823 4.810345 CTGGATTAGAAGGAGGGAGTACT 58.190 47.826 0.00 0.00 0.00 2.73
1775 1830 3.768215 AGAAGGAGGGAGTACTTAAACGG 59.232 47.826 0.00 0.00 0.00 4.44
1787 1842 4.594123 ACTTAAACGGGGGAAACATTTG 57.406 40.909 0.00 0.00 0.00 2.32
1789 1844 0.032815 AAACGGGGGAAACATTTGCG 59.967 50.000 0.00 0.00 0.00 4.85
1793 1848 0.676736 GGGGGAAACATTTGCGTTGA 59.323 50.000 0.00 0.00 0.00 3.18
1845 1900 6.518493 ACTGTACCGACTACAATTTCAGAAA 58.482 36.000 0.00 0.00 34.80 2.52
1873 1928 0.598065 ATTGTTCCTCAAGTTGCGGC 59.402 50.000 7.03 0.00 39.55 6.53
1875 1930 1.282875 GTTCCTCAAGTTGCGGCAC 59.717 57.895 0.05 2.85 0.00 5.01
1903 1958 2.599875 TGCTTGGCGGGCAAATGA 60.600 55.556 18.03 2.24 36.71 2.57
1923 1978 3.007506 TGATGCTAACGTTTCTTGGGAGA 59.992 43.478 5.91 0.00 0.00 3.71
1954 2009 7.151976 TGAGGACATATACAACAACGGATATG 58.848 38.462 2.29 2.29 37.97 1.78
1963 2018 5.492895 ACAACAACGGATATGTGAACCATA 58.507 37.500 0.00 0.00 40.27 2.74
1965 2020 5.353394 ACAACGGATATGTGAACCATACT 57.647 39.130 0.00 0.00 38.83 2.12
1980 2035 1.670811 CATACTTGGGGCTTACTTGCG 59.329 52.381 0.00 0.00 0.00 4.85
1982 2037 1.971167 CTTGGGGCTTACTTGCGCA 60.971 57.895 5.66 5.66 45.91 6.09
2001 2056 2.935201 GCAATCTCTGCGATCTCTTGTT 59.065 45.455 0.00 0.00 42.37 2.83
2002 2057 4.115516 GCAATCTCTGCGATCTCTTGTTA 58.884 43.478 0.00 0.00 42.37 2.41
2038 2093 6.578163 AGCCTTAACTTAATTTACCGCAAA 57.422 33.333 6.09 0.00 0.00 3.68
2042 2097 9.524106 GCCTTAACTTAATTTACCGCAAATATT 57.476 29.630 0.00 0.00 35.74 1.28
2055 2111 7.164230 ACCGCAAATATTGGACTGAATTTTA 57.836 32.000 0.00 0.00 0.00 1.52
2056 2112 7.607250 ACCGCAAATATTGGACTGAATTTTAA 58.393 30.769 0.00 0.00 0.00 1.52
2057 2113 8.091449 ACCGCAAATATTGGACTGAATTTTAAA 58.909 29.630 0.00 0.00 0.00 1.52
2109 2165 2.290260 TGTATCAAACAGGGTCTGCTGG 60.290 50.000 0.00 0.00 34.37 4.85
2135 2191 2.480802 GGAAAAGCTCGACTCCTTCAAC 59.519 50.000 0.00 0.00 0.00 3.18
2138 2194 1.343069 AGCTCGACTCCTTCAACCTT 58.657 50.000 0.00 0.00 0.00 3.50
2148 2204 3.681593 TCCTTCAACCTTCCCATTTACG 58.318 45.455 0.00 0.00 0.00 3.18
2157 2213 2.631428 CCATTTACGCGCCATCGG 59.369 61.111 5.73 0.00 35.95 4.18
2168 2224 1.934589 CGCCATCGGTCAATGAAGTA 58.065 50.000 0.00 0.00 0.00 2.24
2173 2229 4.513442 CCATCGGTCAATGAAGTAAAGGA 58.487 43.478 0.00 0.00 0.00 3.36
2174 2230 4.572389 CCATCGGTCAATGAAGTAAAGGAG 59.428 45.833 0.00 0.00 0.00 3.69
2183 2239 3.428532 TGAAGTAAAGGAGGTAGTCGCT 58.571 45.455 0.00 0.00 0.00 4.93
2191 2247 1.347320 GAGGTAGTCGCTCAAAACGG 58.653 55.000 0.00 0.00 0.00 4.44
2201 2257 2.190161 GCTCAAAACGGGTTGTTCAAC 58.810 47.619 7.09 7.09 40.84 3.18
2202 2258 2.416162 GCTCAAAACGGGTTGTTCAACA 60.416 45.455 15.89 0.00 40.84 3.33
2204 2260 4.035278 TCAAAACGGGTTGTTCAACATC 57.965 40.909 15.89 7.74 40.84 3.06
2222 2278 5.217978 ACATCAGCCACATCAAATTGTTT 57.782 34.783 0.00 0.00 0.00 2.83
2249 2305 3.074094 CCAACTGGGATCCTCATGATGAT 59.926 47.826 12.58 12.69 40.01 2.45
2253 2309 4.041815 ACTGGGATCCTCATGATGATTCAG 59.958 45.833 25.43 25.43 34.73 3.02
2260 2316 3.498121 CCTCATGATGATTCAGAAGGGGG 60.498 52.174 0.00 0.00 35.39 5.40
2264 2320 2.507058 TGATGATTCAGAAGGGGGTGAG 59.493 50.000 0.00 0.00 0.00 3.51
2266 2322 1.290134 GATTCAGAAGGGGGTGAGGT 58.710 55.000 0.00 0.00 0.00 3.85
2270 2326 1.132657 TCAGAAGGGGGTGAGGTACAA 60.133 52.381 0.00 0.00 0.00 2.41
2275 2331 4.227527 AGAAGGGGGTGAGGTACAAAATAG 59.772 45.833 0.00 0.00 0.00 1.73
2277 2333 2.285977 GGGGTGAGGTACAAAATAGCG 58.714 52.381 0.00 0.00 0.00 4.26
2278 2334 2.093341 GGGGTGAGGTACAAAATAGCGA 60.093 50.000 0.00 0.00 0.00 4.93
2279 2335 3.602483 GGGTGAGGTACAAAATAGCGAA 58.398 45.455 0.00 0.00 0.00 4.70
2287 2343 1.732259 ACAAAATAGCGAACAGAGCGG 59.268 47.619 0.00 0.00 40.04 5.52
2321 2377 1.600916 GAGCTTGAGGGCGGTGTTT 60.601 57.895 0.00 0.00 37.29 2.83
2338 2394 2.312390 GTTTGGACCCCTACTTGCAAA 58.688 47.619 0.00 0.00 31.44 3.68
2339 2395 2.696187 GTTTGGACCCCTACTTGCAAAA 59.304 45.455 0.00 0.00 35.20 2.44
2345 2401 4.202315 GGACCCCTACTTGCAAAACATTTT 60.202 41.667 0.00 0.00 0.00 1.82
2363 2419 4.320608 TTTTGGTGAATCCTTGCTGAAC 57.679 40.909 0.00 0.00 37.07 3.18
2364 2420 2.655090 TGGTGAATCCTTGCTGAACA 57.345 45.000 0.00 0.00 37.07 3.18
2365 2421 2.507484 TGGTGAATCCTTGCTGAACAG 58.493 47.619 0.00 0.00 37.07 3.16
2367 2423 2.508526 GTGAATCCTTGCTGAACAGGT 58.491 47.619 3.99 0.00 0.00 4.00
2385 2441 6.403866 ACAGGTTATTCAAGAAATGTGCAA 57.596 33.333 0.00 0.00 0.00 4.08
2420 2479 3.719939 CCTTGAGAGGGGAGAAGGA 57.280 57.895 0.00 0.00 39.55 3.36
2426 2485 3.442076 TGAGAGGGGAGAAGGAAAGTAC 58.558 50.000 0.00 0.00 0.00 2.73
2447 2506 0.247460 TTCTCATCTGCGTGTCCCTG 59.753 55.000 0.00 0.00 0.00 4.45
2460 2519 4.378459 GCGTGTCCCTGAAAAGAACATAAG 60.378 45.833 0.00 0.00 0.00 1.73
2462 2521 5.468746 CGTGTCCCTGAAAAGAACATAAGAA 59.531 40.000 0.00 0.00 0.00 2.52
2490 2549 2.254471 ATGCATGCATGATCTCGCC 58.746 52.632 31.74 10.88 35.03 5.54
2491 2550 1.574702 ATGCATGCATGATCTCGCCG 61.575 55.000 31.74 0.20 35.03 6.46
2500 2559 1.021968 TGATCTCGCCGAATCGAAGA 58.978 50.000 3.36 4.53 45.75 2.87
2507 2566 0.514691 GCCGAATCGAAGATCATGCC 59.485 55.000 3.36 0.00 45.12 4.40
2542 2601 6.043822 TGCACCTATGGGTATATTACACACAT 59.956 38.462 0.00 0.00 46.26 3.21
2544 2603 8.265055 GCACCTATGGGTATATTACACACATAT 58.735 37.037 0.00 0.00 46.26 1.78
2578 2637 7.421530 TCTGTTCTTTTGTATACACTTCTGC 57.578 36.000 4.68 0.00 0.00 4.26
2579 2638 6.989759 TCTGTTCTTTTGTATACACTTCTGCA 59.010 34.615 4.68 1.14 0.00 4.41
2580 2639 7.171508 TCTGTTCTTTTGTATACACTTCTGCAG 59.828 37.037 7.63 7.63 0.00 4.41
2664 2723 1.803334 TGCGCCGTTGTCTTCTTTAT 58.197 45.000 4.18 0.00 0.00 1.40
2665 2724 1.730064 TGCGCCGTTGTCTTCTTTATC 59.270 47.619 4.18 0.00 0.00 1.75
2666 2725 2.000447 GCGCCGTTGTCTTCTTTATCT 59.000 47.619 0.00 0.00 0.00 1.98
2667 2726 2.222819 GCGCCGTTGTCTTCTTTATCTG 60.223 50.000 0.00 0.00 0.00 2.90
2668 2727 2.993899 CGCCGTTGTCTTCTTTATCTGT 59.006 45.455 0.00 0.00 0.00 3.41
2703 2762 7.594758 GTGCATGATTTGTGTTGTTGTACTTAT 59.405 33.333 0.00 0.00 0.00 1.73
2704 2763 8.787852 TGCATGATTTGTGTTGTTGTACTTATA 58.212 29.630 0.00 0.00 0.00 0.98
2705 2764 9.787532 GCATGATTTGTGTTGTTGTACTTATAT 57.212 29.630 0.00 0.00 0.00 0.86
2752 2811 9.414295 CATTTTGTCATAGACATGTCATTTGTT 57.586 29.630 27.02 8.37 42.40 2.83
2754 2813 9.462174 TTTTGTCATAGACATGTCATTTGTTTC 57.538 29.630 27.02 14.54 42.40 2.78
2812 2873 3.142393 AGGCACTTGTCAGCTCGT 58.858 55.556 0.00 0.00 27.25 4.18
2813 2874 2.351777 AGGCACTTGTCAGCTCGTA 58.648 52.632 0.00 0.00 27.25 3.43
2814 2875 0.038159 AGGCACTTGTCAGCTCGTAC 60.038 55.000 0.00 0.00 27.25 3.67
2815 2876 0.038159 GGCACTTGTCAGCTCGTACT 60.038 55.000 0.00 0.00 0.00 2.73
2816 2877 1.605712 GGCACTTGTCAGCTCGTACTT 60.606 52.381 0.00 0.00 0.00 2.24
2817 2878 2.135933 GCACTTGTCAGCTCGTACTTT 58.864 47.619 0.00 0.00 0.00 2.66
2818 2879 3.314553 GCACTTGTCAGCTCGTACTTTA 58.685 45.455 0.00 0.00 0.00 1.85
2819 2880 3.739300 GCACTTGTCAGCTCGTACTTTAA 59.261 43.478 0.00 0.00 0.00 1.52
2820 2881 4.389077 GCACTTGTCAGCTCGTACTTTAAT 59.611 41.667 0.00 0.00 0.00 1.40
2821 2882 5.107065 GCACTTGTCAGCTCGTACTTTAATT 60.107 40.000 0.00 0.00 0.00 1.40
2822 2883 6.090358 GCACTTGTCAGCTCGTACTTTAATTA 59.910 38.462 0.00 0.00 0.00 1.40
2823 2884 7.359765 GCACTTGTCAGCTCGTACTTTAATTAA 60.360 37.037 0.00 0.00 0.00 1.40
2824 2885 8.162880 CACTTGTCAGCTCGTACTTTAATTAAG 58.837 37.037 0.00 0.00 39.87 1.85
2825 2886 8.086522 ACTTGTCAGCTCGTACTTTAATTAAGA 58.913 33.333 0.00 0.00 37.30 2.10
2826 2887 8.462143 TTGTCAGCTCGTACTTTAATTAAGAG 57.538 34.615 0.00 3.01 37.30 2.85
2827 2888 7.823665 TGTCAGCTCGTACTTTAATTAAGAGA 58.176 34.615 13.00 3.93 37.30 3.10
2828 2889 7.968956 TGTCAGCTCGTACTTTAATTAAGAGAG 59.031 37.037 13.00 11.60 37.30 3.20
2829 2890 7.432838 GTCAGCTCGTACTTTAATTAAGAGAGG 59.567 40.741 13.00 6.21 37.30 3.69
2830 2891 6.199342 CAGCTCGTACTTTAATTAAGAGAGGC 59.801 42.308 13.00 7.27 37.30 4.70
2831 2892 5.462729 GCTCGTACTTTAATTAAGAGAGGCC 59.537 44.000 13.00 0.00 37.30 5.19
2832 2893 5.910614 TCGTACTTTAATTAAGAGAGGCCC 58.089 41.667 0.00 0.00 37.30 5.80
2833 2894 5.659971 TCGTACTTTAATTAAGAGAGGCCCT 59.340 40.000 0.00 0.00 37.30 5.19
2834 2895 6.835488 TCGTACTTTAATTAAGAGAGGCCCTA 59.165 38.462 0.00 0.00 37.30 3.53
2835 2896 7.014038 TCGTACTTTAATTAAGAGAGGCCCTAG 59.986 40.741 0.00 1.33 37.30 3.02
2836 2897 7.014038 CGTACTTTAATTAAGAGAGGCCCTAGA 59.986 40.741 0.00 0.00 37.30 2.43
2837 2898 7.750947 ACTTTAATTAAGAGAGGCCCTAGAA 57.249 36.000 0.00 0.00 37.30 2.10
2838 2899 8.159229 ACTTTAATTAAGAGAGGCCCTAGAAA 57.841 34.615 0.00 0.00 37.30 2.52
2839 2900 8.612145 ACTTTAATTAAGAGAGGCCCTAGAAAA 58.388 33.333 0.00 0.00 37.30 2.29
2840 2901 9.634021 CTTTAATTAAGAGAGGCCCTAGAAAAT 57.366 33.333 0.00 0.00 35.80 1.82
2841 2902 9.990868 TTTAATTAAGAGAGGCCCTAGAAAATT 57.009 29.630 0.00 2.50 0.00 1.82
2842 2903 9.628500 TTAATTAAGAGAGGCCCTAGAAAATTC 57.372 33.333 0.00 0.00 0.00 2.17
2843 2904 3.828875 AGAGAGGCCCTAGAAAATTCG 57.171 47.619 0.00 0.00 0.00 3.34
2844 2905 3.375699 AGAGAGGCCCTAGAAAATTCGA 58.624 45.455 0.00 0.00 0.00 3.71
2845 2906 3.970640 AGAGAGGCCCTAGAAAATTCGAT 59.029 43.478 0.00 0.00 0.00 3.59
2846 2907 4.410555 AGAGAGGCCCTAGAAAATTCGATT 59.589 41.667 0.00 0.00 0.00 3.34
2847 2908 5.104318 AGAGAGGCCCTAGAAAATTCGATTT 60.104 40.000 0.00 0.00 0.00 2.17
2848 2909 4.884164 AGAGGCCCTAGAAAATTCGATTTG 59.116 41.667 0.00 0.00 31.77 2.32
2849 2910 4.600062 AGGCCCTAGAAAATTCGATTTGT 58.400 39.130 0.00 0.00 31.77 2.83
2850 2911 4.640647 AGGCCCTAGAAAATTCGATTTGTC 59.359 41.667 0.00 2.57 31.77 3.18
2851 2912 4.202020 GGCCCTAGAAAATTCGATTTGTCC 60.202 45.833 6.61 0.00 31.77 4.02
2852 2913 4.202020 GCCCTAGAAAATTCGATTTGTCCC 60.202 45.833 6.61 0.00 31.77 4.46
2853 2914 5.193679 CCCTAGAAAATTCGATTTGTCCCT 58.806 41.667 6.61 0.00 31.77 4.20
2854 2915 5.297029 CCCTAGAAAATTCGATTTGTCCCTC 59.703 44.000 6.61 0.00 31.77 4.30
2855 2916 4.946784 AGAAAATTCGATTTGTCCCTCG 57.053 40.909 6.61 0.00 36.25 4.63
2856 2917 3.127030 AGAAAATTCGATTTGTCCCTCGC 59.873 43.478 6.61 0.00 34.94 5.03
2857 2918 2.107950 AATTCGATTTGTCCCTCGCA 57.892 45.000 0.00 0.00 34.94 5.10
2858 2919 2.107950 ATTCGATTTGTCCCTCGCAA 57.892 45.000 0.00 0.00 34.94 4.85
2859 2920 1.885560 TTCGATTTGTCCCTCGCAAA 58.114 45.000 0.00 0.00 39.69 3.68
2860 2921 2.107950 TCGATTTGTCCCTCGCAAAT 57.892 45.000 3.33 3.33 45.73 2.32
2861 2922 1.737236 TCGATTTGTCCCTCGCAAATG 59.263 47.619 7.83 2.39 43.87 2.32
2862 2923 1.202177 CGATTTGTCCCTCGCAAATGG 60.202 52.381 7.83 3.76 43.87 3.16
2863 2924 2.091541 GATTTGTCCCTCGCAAATGGA 58.908 47.619 7.83 0.00 43.87 3.41
2864 2925 2.214376 TTTGTCCCTCGCAAATGGAT 57.786 45.000 0.00 0.00 31.74 3.41
2865 2926 3.358111 TTTGTCCCTCGCAAATGGATA 57.642 42.857 0.00 0.00 31.74 2.59
2866 2927 2.620251 TGTCCCTCGCAAATGGATAG 57.380 50.000 0.00 0.00 0.00 2.08
2867 2928 1.837439 TGTCCCTCGCAAATGGATAGT 59.163 47.619 0.00 0.00 0.00 2.12
2868 2929 2.238646 TGTCCCTCGCAAATGGATAGTT 59.761 45.455 0.00 0.00 0.00 2.24
2869 2930 2.614057 GTCCCTCGCAAATGGATAGTTG 59.386 50.000 0.00 0.00 35.12 3.16
2877 2938 4.278678 CAAATGGATAGTTGCCGTCTTC 57.721 45.455 0.00 0.00 0.00 2.87
2878 2939 3.914426 AATGGATAGTTGCCGTCTTCT 57.086 42.857 0.00 0.00 0.00 2.85
2879 2940 3.914426 ATGGATAGTTGCCGTCTTCTT 57.086 42.857 0.00 0.00 0.00 2.52
2880 2941 3.247006 TGGATAGTTGCCGTCTTCTTC 57.753 47.619 0.00 0.00 0.00 2.87
2881 2942 2.194271 GGATAGTTGCCGTCTTCTTCG 58.806 52.381 0.00 0.00 0.00 3.79
2882 2943 2.159282 GGATAGTTGCCGTCTTCTTCGA 60.159 50.000 0.00 0.00 0.00 3.71
2883 2944 3.491104 GGATAGTTGCCGTCTTCTTCGAT 60.491 47.826 0.00 0.00 0.00 3.59
2884 2945 1.997669 AGTTGCCGTCTTCTTCGATC 58.002 50.000 0.00 0.00 0.00 3.69
2885 2946 1.000145 GTTGCCGTCTTCTTCGATCC 59.000 55.000 0.00 0.00 0.00 3.36
2886 2947 0.606096 TTGCCGTCTTCTTCGATCCA 59.394 50.000 0.00 0.00 0.00 3.41
2887 2948 0.173481 TGCCGTCTTCTTCGATCCAG 59.827 55.000 0.00 0.00 0.00 3.86
2888 2949 0.173708 GCCGTCTTCTTCGATCCAGT 59.826 55.000 0.00 0.00 0.00 4.00
2889 2950 1.799548 GCCGTCTTCTTCGATCCAGTC 60.800 57.143 0.00 0.00 0.00 3.51
2897 2958 2.885113 CGATCCAGTCGCTGTCCA 59.115 61.111 6.19 0.00 44.33 4.02
2898 2959 1.215382 CGATCCAGTCGCTGTCCAA 59.785 57.895 6.19 0.00 44.33 3.53
2899 2960 0.179100 CGATCCAGTCGCTGTCCAAT 60.179 55.000 6.19 0.00 44.33 3.16
2900 2961 1.576356 GATCCAGTCGCTGTCCAATC 58.424 55.000 6.19 1.66 0.00 2.67
2901 2962 0.179000 ATCCAGTCGCTGTCCAATCC 59.821 55.000 6.19 0.00 0.00 3.01
2902 2963 0.904865 TCCAGTCGCTGTCCAATCCT 60.905 55.000 6.19 0.00 0.00 3.24
2903 2964 0.036010 CCAGTCGCTGTCCAATCCTT 60.036 55.000 6.19 0.00 0.00 3.36
2904 2965 1.363744 CAGTCGCTGTCCAATCCTTC 58.636 55.000 0.00 0.00 0.00 3.46
2905 2966 0.250513 AGTCGCTGTCCAATCCTTCC 59.749 55.000 0.00 0.00 0.00 3.46
2906 2967 1.084370 GTCGCTGTCCAATCCTTCCG 61.084 60.000 0.00 0.00 0.00 4.30
2907 2968 1.218047 CGCTGTCCAATCCTTCCGA 59.782 57.895 0.00 0.00 0.00 4.55
2908 2969 0.807667 CGCTGTCCAATCCTTCCGAG 60.808 60.000 0.00 0.00 0.00 4.63
2909 2970 0.462759 GCTGTCCAATCCTTCCGAGG 60.463 60.000 0.00 0.00 45.02 4.63
2910 2971 0.179000 CTGTCCAATCCTTCCGAGGG 59.821 60.000 0.00 0.00 43.72 4.30
2911 2972 1.271840 TGTCCAATCCTTCCGAGGGG 61.272 60.000 0.00 0.00 43.72 4.79
2912 2973 0.981277 GTCCAATCCTTCCGAGGGGA 60.981 60.000 0.00 0.00 43.72 4.81
2931 2992 0.033920 AATGCTCTATCGCCGATGCA 59.966 50.000 10.41 11.41 37.32 3.96
2971 3032 2.103263 GGATGGGTAGGTAGCAGTTGAG 59.897 54.545 0.00 0.00 0.00 3.02
3022 3083 4.381411 GCTGACAACTCCTTGTTTCTAGT 58.619 43.478 0.00 0.00 40.93 2.57
3030 3091 3.476552 TCCTTGTTTCTAGTGGCACTTG 58.523 45.455 27.24 23.68 0.00 3.16
3031 3092 3.135712 TCCTTGTTTCTAGTGGCACTTGA 59.864 43.478 27.24 25.69 0.00 3.02
3032 3093 3.251004 CCTTGTTTCTAGTGGCACTTGAC 59.749 47.826 27.29 19.05 30.12 3.18
3033 3094 3.838244 TGTTTCTAGTGGCACTTGACT 57.162 42.857 27.29 6.43 30.12 3.41
3034 3095 3.466836 TGTTTCTAGTGGCACTTGACTG 58.533 45.455 27.29 12.88 30.12 3.51
3068 3136 2.225394 ACTCTCCTTCCAGGACTAGCAA 60.225 50.000 0.00 0.00 40.06 3.91
3069 3137 3.037549 CTCTCCTTCCAGGACTAGCAAT 58.962 50.000 0.00 0.00 40.06 3.56
3076 3144 1.474677 CCAGGACTAGCAATGAGGCTG 60.475 57.143 0.00 0.00 45.44 4.85
3082 3150 2.169352 ACTAGCAATGAGGCTGTGTAGG 59.831 50.000 0.00 0.00 45.44 3.18
3083 3151 0.254178 AGCAATGAGGCTGTGTAGGG 59.746 55.000 0.00 0.00 43.89 3.53
3084 3152 0.253044 GCAATGAGGCTGTGTAGGGA 59.747 55.000 0.00 0.00 0.00 4.20
3189 3257 4.500117 CGACGTCCGTAAAATGCTTATGTA 59.500 41.667 10.58 0.00 0.00 2.29
3202 3270 7.645058 AATGCTTATGTATTATATGGCCACC 57.355 36.000 8.16 0.00 0.00 4.61
3212 3357 5.606348 TTATATGGCCACCCAATGTTTTC 57.394 39.130 8.16 0.00 46.14 2.29
3228 3373 5.682943 TGTTTTCGGAGTTGATTACCAAG 57.317 39.130 0.00 0.00 35.03 3.61
3277 3422 8.372459 TGTATCCAGTTAACTGTATTCTGTTGT 58.628 33.333 29.05 3.79 42.27 3.32
3278 3423 9.865321 GTATCCAGTTAACTGTATTCTGTTGTA 57.135 33.333 29.05 3.81 42.27 2.41
3285 3430 9.431887 GTTAACTGTATTCTGTTGTATCTTCCA 57.568 33.333 0.00 0.00 37.09 3.53
3319 3464 5.641209 AGATGCCGACTTCATTATATGCTTC 59.359 40.000 0.00 0.00 0.00 3.86
3364 3513 2.288763 CGGCATGGTTATAAAATGGGGC 60.289 50.000 10.07 0.00 0.00 5.80
3370 3519 5.987019 TGGTTATAAAATGGGGCTCTAGT 57.013 39.130 0.00 0.00 0.00 2.57
3377 3526 4.870021 AAATGGGGCTCTAGTTCTGATT 57.130 40.909 0.00 0.00 0.00 2.57
3382 3531 1.141858 GGCTCTAGTTCTGATTGGGGG 59.858 57.143 0.00 0.00 0.00 5.40
3383 3532 2.119495 GCTCTAGTTCTGATTGGGGGA 58.881 52.381 0.00 0.00 0.00 4.81
3385 3534 3.647636 CTCTAGTTCTGATTGGGGGAGA 58.352 50.000 0.00 0.00 0.00 3.71
3386 3535 3.640967 CTCTAGTTCTGATTGGGGGAGAG 59.359 52.174 0.00 0.00 0.00 3.20
3444 3606 7.630242 AAATTGATCGACATTATTGACCACT 57.370 32.000 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.785041 GAACAAGTCCTTGCGCTGCA 61.785 55.000 9.73 0.00 44.03 4.41
1 2 1.081840 GAACAAGTCCTTGCGCTGC 60.082 57.895 9.73 0.00 44.03 5.25
2 3 1.576421 GGAACAAGTCCTTGCGCTG 59.424 57.895 9.73 0.76 43.98 5.18
3 4 4.065110 GGAACAAGTCCTTGCGCT 57.935 55.556 9.73 0.00 43.98 5.92
11 12 1.796796 GCATCCGCTGGAACAAGTC 59.203 57.895 1.44 0.00 38.70 3.01
12 13 2.034879 CGCATCCGCTGGAACAAGT 61.035 57.895 1.44 0.00 38.70 3.16
13 14 2.787249 CGCATCCGCTGGAACAAG 59.213 61.111 1.44 0.00 38.70 3.16
74 79 3.834799 GTCTGAGGTACCGCCCGG 61.835 72.222 13.56 4.96 38.26 5.73
77 82 3.450115 AGCGTCTGAGGTACCGCC 61.450 66.667 13.56 6.79 46.85 6.13
93 98 2.549563 CCAAGATCCGGATCACCATCAG 60.550 54.545 38.83 21.72 40.22 2.90
128 133 1.460504 CATCACAATCTGCAGCCACT 58.539 50.000 9.47 0.00 0.00 4.00
199 204 5.574740 CGGATATAGAGAGATGAACTCCCCT 60.575 48.000 0.00 0.00 45.96 4.79
201 206 5.502079 TCGGATATAGAGAGATGAACTCCC 58.498 45.833 0.00 0.00 45.96 4.30
216 221 4.142752 CGGCGAAGTCAACTATCGGATATA 60.143 45.833 0.00 0.00 37.08 0.86
315 320 2.369203 TCACCACCACTTTTCCACGATA 59.631 45.455 0.00 0.00 0.00 2.92
394 400 1.661463 TCAGATCTGGGCTTTCACCT 58.339 50.000 22.42 0.00 0.00 4.00
444 450 4.201851 CCGAGCAATGTCTTCAATAAGGTG 60.202 45.833 0.00 0.00 33.22 4.00
450 456 5.371526 ACATATCCGAGCAATGTCTTCAAT 58.628 37.500 0.00 0.00 0.00 2.57
457 463 2.102420 TCCGAACATATCCGAGCAATGT 59.898 45.455 0.00 0.00 35.40 2.71
473 479 3.325425 TCACCCTGAAATAACAGTCCGAA 59.675 43.478 0.00 0.00 36.30 4.30
557 563 5.744666 TTAACAGCAACACCTTCAGTAAC 57.255 39.130 0.00 0.00 0.00 2.50
753 771 1.457823 ATGCACACAGCCAACACCAG 61.458 55.000 0.00 0.00 44.83 4.00
774 792 3.788227 ATCCGGCCTCTGCATAATTAA 57.212 42.857 0.00 0.00 40.13 1.40
870 888 1.392710 TTCCTCTCGATCGAAGGGCC 61.393 60.000 29.56 0.00 0.00 5.80
871 889 0.249114 GTTCCTCTCGATCGAAGGGC 60.249 60.000 29.56 22.82 0.00 5.19
872 890 1.103803 TGTTCCTCTCGATCGAAGGG 58.896 55.000 29.56 26.34 0.00 3.95
873 891 2.164624 ACTTGTTCCTCTCGATCGAAGG 59.835 50.000 26.93 26.93 0.00 3.46
874 892 3.119814 TGACTTGTTCCTCTCGATCGAAG 60.120 47.826 19.92 17.44 0.00 3.79
893 911 2.229792 TGATTGCCCAAGAAGTGTGAC 58.770 47.619 0.00 0.00 0.00 3.67
906 924 9.301897 AGAACTATTTATAGGGAAATGATTGCC 57.698 33.333 0.00 0.00 46.76 4.52
929 947 1.153066 TTGTCGCCCTTGTGCAGAA 60.153 52.632 0.00 0.00 0.00 3.02
930 948 1.597854 CTTGTCGCCCTTGTGCAGA 60.598 57.895 0.00 0.00 0.00 4.26
937 955 0.320771 CAGTAGCACTTGTCGCCCTT 60.321 55.000 0.00 0.00 0.00 3.95
949 967 5.740224 GCCTAATTCTGATGTAGCAGTAGCA 60.740 44.000 0.00 0.00 45.49 3.49
978 997 4.491234 AGCTACGATCGAATAGACCTTG 57.509 45.455 24.34 0.00 0.00 3.61
982 1001 6.600350 TGTTCATAGCTACGATCGAATAGAC 58.400 40.000 24.34 9.97 0.00 2.59
1078 1101 8.182881 AGTACGTGTTCTTCATGTCTAGATAAC 58.817 37.037 0.00 0.00 44.13 1.89
1079 1102 8.277490 AGTACGTGTTCTTCATGTCTAGATAA 57.723 34.615 0.00 0.00 44.13 1.75
1086 1116 6.200286 TGAAAGAAGTACGTGTTCTTCATGTC 59.800 38.462 21.35 16.77 42.25 3.06
1091 1121 8.709646 ACAATATGAAAGAAGTACGTGTTCTTC 58.290 33.333 21.35 18.89 42.25 2.87
1185 1218 3.808466 TGCAATCTACTCAGAGCGAAT 57.192 42.857 0.00 0.00 33.22 3.34
1188 1221 3.193263 ACAATGCAATCTACTCAGAGCG 58.807 45.455 0.00 0.00 33.22 5.03
1278 1311 3.121030 CGGCCTTCTCAAGCACCG 61.121 66.667 0.00 0.00 39.31 4.94
1297 1330 1.134580 AGATCCATGCACACTTCTCCG 60.135 52.381 0.00 0.00 0.00 4.63
1298 1331 2.559440 GAGATCCATGCACACTTCTCC 58.441 52.381 0.00 0.00 0.00 3.71
1357 1393 3.900601 AGAAGAGTGTGTTCTGACCAGAT 59.099 43.478 0.01 0.00 37.29 2.90
1381 1417 3.077359 CACTTTGATCACCTTGGAGACC 58.923 50.000 0.00 0.00 0.00 3.85
1441 1477 2.037772 GAGAAAGAACTGGAGCTCCACA 59.962 50.000 32.00 12.30 42.01 4.17
1469 1505 7.458397 ACATAGTTGAAGTCATTTCCTGGTAA 58.542 34.615 0.00 0.00 34.77 2.85
1490 1526 3.829948 GTTCGAGTGAACGGAAGACATA 58.170 45.455 0.00 0.00 44.55 2.29
1530 1566 3.670625 AGCAGTGTATTTTGTTCCGCTA 58.329 40.909 0.00 0.00 0.00 4.26
1534 1570 4.082949 GGTGGTAGCAGTGTATTTTGTTCC 60.083 45.833 0.00 0.00 0.00 3.62
1583 1631 2.027100 GGAAAAGCCTAGTGTAGCAGGT 60.027 50.000 0.00 0.00 34.18 4.00
1587 1635 2.738964 CGAGGGAAAAGCCTAGTGTAGC 60.739 54.545 0.00 0.00 36.66 3.58
1653 1701 1.553248 CCAATTGTGGTACCCGAGAGA 59.447 52.381 10.07 0.00 40.42 3.10
1741 1789 2.122768 CCTCCTTCTAATCCAGCAGGT 58.877 52.381 0.00 0.00 38.69 4.00
1756 1804 2.464782 CCCGTTTAAGTACTCCCTCCT 58.535 52.381 0.00 0.00 0.00 3.69
1758 1806 1.483827 CCCCCGTTTAAGTACTCCCTC 59.516 57.143 0.00 0.00 0.00 4.30
1761 1816 3.244526 TGTTTCCCCCGTTTAAGTACTCC 60.245 47.826 0.00 0.00 0.00 3.85
1764 1819 5.463286 CAAATGTTTCCCCCGTTTAAGTAC 58.537 41.667 0.00 0.00 0.00 2.73
1768 1823 2.288273 CGCAAATGTTTCCCCCGTTTAA 60.288 45.455 0.00 0.00 0.00 1.52
1775 1830 2.741759 ATCAACGCAAATGTTTCCCC 57.258 45.000 0.00 0.00 0.00 4.81
1789 1844 2.860735 CTGCTGGCGTAGTCTTATCAAC 59.139 50.000 0.00 0.00 0.00 3.18
1793 1848 1.137086 CACCTGCTGGCGTAGTCTTAT 59.863 52.381 9.95 0.00 36.63 1.73
1822 1877 6.866770 TCTTTCTGAAATTGTAGTCGGTACAG 59.133 38.462 2.88 0.00 42.75 2.74
1845 1900 6.294176 GCAACTTGAGGAACAATAACATGTCT 60.294 38.462 0.00 0.00 37.88 3.41
1903 1958 3.695830 TCTCCCAAGAAACGTTAGCAT 57.304 42.857 0.00 0.00 0.00 3.79
1914 1969 6.581388 ATGTCCTCATATTTTCTCCCAAGA 57.419 37.500 0.00 0.00 31.89 3.02
1923 1978 8.836413 CCGTTGTTGTATATGTCCTCATATTTT 58.164 33.333 6.13 0.00 42.51 1.82
1954 2009 2.215942 AAGCCCCAAGTATGGTTCAC 57.784 50.000 0.00 0.00 46.01 3.18
1963 2018 1.971695 GCGCAAGTAAGCCCCAAGT 60.972 57.895 0.30 0.00 41.68 3.16
1965 2020 1.529478 TTGCGCAAGTAAGCCCCAA 60.529 52.632 21.02 0.00 36.89 4.12
1980 2035 6.726248 CTTTAACAAGAGATCGCAGAGATTGC 60.726 42.308 0.00 0.00 39.83 3.56
1982 2037 6.634805 TCTTTAACAAGAGATCGCAGAGATT 58.365 36.000 0.00 0.00 34.94 2.40
1991 2046 5.847670 ACGCACTTCTTTAACAAGAGATC 57.152 39.130 1.15 0.00 40.28 2.75
2001 2056 5.544650 AGTTAAGGCTTACGCACTTCTTTA 58.455 37.500 6.43 0.00 38.10 1.85
2002 2057 4.386711 AGTTAAGGCTTACGCACTTCTTT 58.613 39.130 6.43 0.00 38.10 2.52
2057 2113 9.965824 CAAATGGTTTACAGTCTTACATTCTTT 57.034 29.630 0.00 0.00 0.00 2.52
2092 2148 0.397941 CTCCAGCAGACCCTGTTTGA 59.602 55.000 0.00 0.00 33.43 2.69
2094 2150 1.072965 CTTCTCCAGCAGACCCTGTTT 59.927 52.381 0.00 0.00 33.43 2.83
2109 2165 2.232696 AGGAGTCGAGCTTTTCCTTCTC 59.767 50.000 0.00 0.00 36.69 2.87
2135 2191 1.101049 ATGGCGCGTAAATGGGAAGG 61.101 55.000 8.43 0.00 0.00 3.46
2138 2194 1.885388 CGATGGCGCGTAAATGGGA 60.885 57.895 8.43 0.00 0.00 4.37
2148 2204 1.353103 CTTCATTGACCGATGGCGC 59.647 57.895 0.00 0.00 35.83 6.53
2157 2213 5.805994 CGACTACCTCCTTTACTTCATTGAC 59.194 44.000 0.00 0.00 0.00 3.18
2168 2224 3.400255 GTTTTGAGCGACTACCTCCTTT 58.600 45.455 0.00 0.00 0.00 3.11
2173 2229 0.037605 CCCGTTTTGAGCGACTACCT 60.038 55.000 0.00 0.00 0.00 3.08
2174 2230 0.320160 ACCCGTTTTGAGCGACTACC 60.320 55.000 0.00 0.00 0.00 3.18
2183 2239 3.444034 TGATGTTGAACAACCCGTTTTGA 59.556 39.130 0.62 0.00 40.46 2.69
2191 2247 1.680735 TGTGGCTGATGTTGAACAACC 59.319 47.619 0.62 2.69 40.46 3.77
2201 2257 5.231702 TCAAACAATTTGATGTGGCTGATG 58.768 37.500 2.79 0.00 44.21 3.07
2202 2258 5.471556 TCAAACAATTTGATGTGGCTGAT 57.528 34.783 2.79 0.00 44.21 2.90
2249 2305 1.132657 TGTACCTCACCCCCTTCTGAA 60.133 52.381 0.00 0.00 0.00 3.02
2253 2309 2.963599 TTTTGTACCTCACCCCCTTC 57.036 50.000 0.00 0.00 0.00 3.46
2260 2316 4.927425 TCTGTTCGCTATTTTGTACCTCAC 59.073 41.667 0.00 0.00 0.00 3.51
2264 2320 3.241995 CGCTCTGTTCGCTATTTTGTACC 60.242 47.826 0.00 0.00 0.00 3.34
2266 2322 2.927477 CCGCTCTGTTCGCTATTTTGTA 59.073 45.455 0.00 0.00 0.00 2.41
2270 2326 0.535335 TCCCGCTCTGTTCGCTATTT 59.465 50.000 0.00 0.00 0.00 1.40
2275 2331 0.651031 GTTAATCCCGCTCTGTTCGC 59.349 55.000 0.00 0.00 0.00 4.70
2277 2333 2.540101 CGATGTTAATCCCGCTCTGTTC 59.460 50.000 0.00 0.00 0.00 3.18
2278 2334 2.550978 CGATGTTAATCCCGCTCTGTT 58.449 47.619 0.00 0.00 0.00 3.16
2279 2335 1.806623 GCGATGTTAATCCCGCTCTGT 60.807 52.381 0.00 0.00 43.75 3.41
2300 2356 1.192146 ACACCGCCCTCAAGCTCTTA 61.192 55.000 0.00 0.00 0.00 2.10
2321 2377 1.215673 TGTTTTGCAAGTAGGGGTCCA 59.784 47.619 0.00 0.00 0.00 4.02
2338 2394 4.344679 TCAGCAAGGATTCACCAAAATGTT 59.655 37.500 0.00 0.00 42.04 2.71
2339 2395 3.896888 TCAGCAAGGATTCACCAAAATGT 59.103 39.130 0.00 0.00 42.04 2.71
2345 2401 2.507484 CTGTTCAGCAAGGATTCACCA 58.493 47.619 0.00 0.00 42.04 4.17
2363 2419 6.925165 AGTTTGCACATTTCTTGAATAACCTG 59.075 34.615 0.00 0.00 0.00 4.00
2364 2420 7.054491 AGTTTGCACATTTCTTGAATAACCT 57.946 32.000 0.00 0.00 0.00 3.50
2365 2421 8.863049 CATAGTTTGCACATTTCTTGAATAACC 58.137 33.333 0.00 0.00 0.00 2.85
2385 2441 2.622942 CAAGGTGTTGTGTGGCATAGTT 59.377 45.455 0.00 0.00 0.00 2.24
2392 2448 1.597742 CCTCTCAAGGTGTTGTGTGG 58.402 55.000 0.00 0.00 37.94 4.17
2396 2452 1.059913 CTCCCCTCTCAAGGTGTTGT 58.940 55.000 0.00 0.00 41.59 3.32
2397 2453 1.352083 TCTCCCCTCTCAAGGTGTTG 58.648 55.000 0.00 0.00 41.59 3.33
2399 2455 1.650528 CTTCTCCCCTCTCAAGGTGT 58.349 55.000 0.00 0.00 41.59 4.16
2426 2485 0.460987 GGGACACGCAGATGAGAAGG 60.461 60.000 0.00 0.00 0.00 3.46
2490 2549 2.160822 AGGGCATGATCTTCGATTCG 57.839 50.000 0.00 0.00 0.00 3.34
2491 2550 3.549625 GCAAAGGGCATGATCTTCGATTC 60.550 47.826 0.00 0.00 43.97 2.52
2557 2616 7.190920 ACTGCAGAAGTGTATACAAAAGAAC 57.809 36.000 23.35 0.00 37.88 3.01
2563 2622 7.744087 ATTGAAACTGCAGAAGTGTATACAA 57.256 32.000 23.35 12.37 39.81 2.41
2564 2623 8.840833 TTATTGAAACTGCAGAAGTGTATACA 57.159 30.769 23.35 0.08 39.81 2.29
2623 2682 7.749539 GCATGGTATTTGCGTTTTTATTAGT 57.250 32.000 0.00 0.00 0.00 2.24
2635 2694 1.138671 AACGGCGCATGGTATTTGC 59.861 52.632 10.83 0.00 36.74 3.68
2648 2707 5.358298 AAACAGATAAAGAAGACAACGGC 57.642 39.130 0.00 0.00 0.00 5.68
2664 2723 7.542824 CACAAATCATGCACATCATTAAACAGA 59.457 33.333 0.00 0.00 31.79 3.41
2665 2724 7.329962 ACACAAATCATGCACATCATTAAACAG 59.670 33.333 0.00 0.00 31.79 3.16
2666 2725 7.153315 ACACAAATCATGCACATCATTAAACA 58.847 30.769 0.00 0.00 31.79 2.83
2667 2726 7.585286 ACACAAATCATGCACATCATTAAAC 57.415 32.000 0.00 0.00 31.79 2.01
2668 2727 7.656542 ACAACACAAATCATGCACATCATTAAA 59.343 29.630 0.00 0.00 31.79 1.52
2679 2738 9.787532 ATATAAGTACAACAACACAAATCATGC 57.212 29.630 0.00 0.00 0.00 4.06
2727 2786 9.985730 AAACAAATGACATGTCTATGACAAAAT 57.014 25.926 25.55 5.62 45.96 1.82
2730 2789 8.075574 GTGAAACAAATGACATGTCTATGACAA 58.924 33.333 25.55 4.83 40.92 3.18
2781 2842 6.072112 ACAAGTGCCTTTTATGTAACAGTG 57.928 37.500 0.00 0.00 0.00 3.66
2783 2844 6.312399 TGACAAGTGCCTTTTATGTAACAG 57.688 37.500 0.00 0.00 0.00 3.16
2801 2862 8.301720 TCTCTTAATTAAAGTACGAGCTGACAA 58.698 33.333 0.00 0.00 36.51 3.18
2802 2863 7.823665 TCTCTTAATTAAAGTACGAGCTGACA 58.176 34.615 0.00 0.00 36.51 3.58
2803 2864 7.432838 CCTCTCTTAATTAAAGTACGAGCTGAC 59.567 40.741 0.00 0.00 36.51 3.51
2804 2865 7.481642 CCTCTCTTAATTAAAGTACGAGCTGA 58.518 38.462 0.00 0.00 36.51 4.26
2805 2866 6.199342 GCCTCTCTTAATTAAAGTACGAGCTG 59.801 42.308 0.00 0.00 36.51 4.24
2806 2867 6.274579 GCCTCTCTTAATTAAAGTACGAGCT 58.725 40.000 0.00 0.00 36.51 4.09
2807 2868 5.462729 GGCCTCTCTTAATTAAAGTACGAGC 59.537 44.000 0.00 0.00 36.51 5.03
2808 2869 5.984323 GGGCCTCTCTTAATTAAAGTACGAG 59.016 44.000 0.84 2.70 36.51 4.18
2809 2870 5.659971 AGGGCCTCTCTTAATTAAAGTACGA 59.340 40.000 0.00 0.00 36.51 3.43
2810 2871 5.915175 AGGGCCTCTCTTAATTAAAGTACG 58.085 41.667 0.00 0.00 36.51 3.67
2811 2872 8.247666 TCTAGGGCCTCTCTTAATTAAAGTAC 57.752 38.462 10.74 0.00 36.51 2.73
2812 2873 8.849543 TTCTAGGGCCTCTCTTAATTAAAGTA 57.150 34.615 10.74 0.00 36.51 2.24
2813 2874 7.750947 TTCTAGGGCCTCTCTTAATTAAAGT 57.249 36.000 10.74 0.00 36.51 2.66
2814 2875 9.634021 ATTTTCTAGGGCCTCTCTTAATTAAAG 57.366 33.333 10.74 0.00 36.45 1.85
2815 2876 9.990868 AATTTTCTAGGGCCTCTCTTAATTAAA 57.009 29.630 10.74 0.00 0.00 1.52
2816 2877 9.628500 GAATTTTCTAGGGCCTCTCTTAATTAA 57.372 33.333 10.74 0.00 0.00 1.40
2817 2878 7.931948 CGAATTTTCTAGGGCCTCTCTTAATTA 59.068 37.037 10.74 0.00 0.00 1.40
2818 2879 6.768381 CGAATTTTCTAGGGCCTCTCTTAATT 59.232 38.462 10.74 11.02 0.00 1.40
2819 2880 6.099845 TCGAATTTTCTAGGGCCTCTCTTAAT 59.900 38.462 10.74 1.97 0.00 1.40
2820 2881 5.424252 TCGAATTTTCTAGGGCCTCTCTTAA 59.576 40.000 10.74 0.00 0.00 1.85
2821 2882 4.960469 TCGAATTTTCTAGGGCCTCTCTTA 59.040 41.667 10.74 0.00 0.00 2.10
2822 2883 3.775316 TCGAATTTTCTAGGGCCTCTCTT 59.225 43.478 10.74 0.00 0.00 2.85
2823 2884 3.375699 TCGAATTTTCTAGGGCCTCTCT 58.624 45.455 10.74 0.00 0.00 3.10
2824 2885 3.821421 TCGAATTTTCTAGGGCCTCTC 57.179 47.619 10.74 0.00 0.00 3.20
2825 2886 4.779993 AATCGAATTTTCTAGGGCCTCT 57.220 40.909 10.74 0.00 0.00 3.69
2826 2887 4.640647 ACAAATCGAATTTTCTAGGGCCTC 59.359 41.667 10.74 0.00 0.00 4.70
2827 2888 4.600062 ACAAATCGAATTTTCTAGGGCCT 58.400 39.130 12.58 12.58 0.00 5.19
2828 2889 4.202020 GGACAAATCGAATTTTCTAGGGCC 60.202 45.833 0.00 0.00 0.00 5.80
2829 2890 4.202020 GGGACAAATCGAATTTTCTAGGGC 60.202 45.833 0.00 0.00 0.00 5.19
2830 2891 5.193679 AGGGACAAATCGAATTTTCTAGGG 58.806 41.667 0.00 0.00 0.00 3.53
2831 2892 5.006746 CGAGGGACAAATCGAATTTTCTAGG 59.993 44.000 0.00 0.00 41.40 3.02
2832 2893 5.502544 GCGAGGGACAAATCGAATTTTCTAG 60.503 44.000 0.00 0.00 41.40 2.43
2833 2894 4.331717 GCGAGGGACAAATCGAATTTTCTA 59.668 41.667 0.00 0.00 41.40 2.10
2834 2895 3.127030 GCGAGGGACAAATCGAATTTTCT 59.873 43.478 0.00 0.00 41.40 2.52
2835 2896 3.119990 TGCGAGGGACAAATCGAATTTTC 60.120 43.478 0.00 0.00 41.40 2.29
2836 2897 2.817258 TGCGAGGGACAAATCGAATTTT 59.183 40.909 0.00 0.00 41.40 1.82
2837 2898 2.432444 TGCGAGGGACAAATCGAATTT 58.568 42.857 0.00 0.00 41.40 1.82
2838 2899 2.107950 TGCGAGGGACAAATCGAATT 57.892 45.000 0.00 0.00 41.40 2.17
2839 2900 2.107950 TTGCGAGGGACAAATCGAAT 57.892 45.000 0.00 0.00 41.40 3.34
2840 2901 1.885560 TTTGCGAGGGACAAATCGAA 58.114 45.000 0.00 0.00 41.40 3.71
2841 2902 1.737236 CATTTGCGAGGGACAAATCGA 59.263 47.619 0.00 0.00 43.94 3.59
2842 2903 1.202177 CCATTTGCGAGGGACAAATCG 60.202 52.381 0.00 0.00 43.94 3.34
2843 2904 2.091541 TCCATTTGCGAGGGACAAATC 58.908 47.619 0.00 0.00 43.94 2.17
2844 2905 2.214376 TCCATTTGCGAGGGACAAAT 57.786 45.000 0.00 0.00 46.05 2.32
2845 2906 2.214376 ATCCATTTGCGAGGGACAAA 57.786 45.000 0.00 0.00 40.98 2.83
2846 2907 2.238646 ACTATCCATTTGCGAGGGACAA 59.761 45.455 0.00 0.00 32.60 3.18
2847 2908 1.837439 ACTATCCATTTGCGAGGGACA 59.163 47.619 0.00 0.00 32.60 4.02
2848 2909 2.614057 CAACTATCCATTTGCGAGGGAC 59.386 50.000 0.00 0.00 32.60 4.46
2849 2910 2.917933 CAACTATCCATTTGCGAGGGA 58.082 47.619 0.00 0.00 34.70 4.20
2850 2911 1.334869 GCAACTATCCATTTGCGAGGG 59.665 52.381 0.00 0.00 38.86 4.30
2851 2912 2.763249 GCAACTATCCATTTGCGAGG 57.237 50.000 0.00 0.00 38.86 4.63
2855 2916 2.017049 AGACGGCAACTATCCATTTGC 58.983 47.619 0.00 0.00 46.14 3.68
2856 2917 3.941483 AGAAGACGGCAACTATCCATTTG 59.059 43.478 0.00 0.00 0.00 2.32
2857 2918 4.222124 AGAAGACGGCAACTATCCATTT 57.778 40.909 0.00 0.00 0.00 2.32
2858 2919 3.914426 AGAAGACGGCAACTATCCATT 57.086 42.857 0.00 0.00 0.00 3.16
2859 2920 3.738281 CGAAGAAGACGGCAACTATCCAT 60.738 47.826 0.00 0.00 0.00 3.41
2860 2921 2.416836 CGAAGAAGACGGCAACTATCCA 60.417 50.000 0.00 0.00 0.00 3.41
2861 2922 2.159282 TCGAAGAAGACGGCAACTATCC 60.159 50.000 0.00 0.00 0.00 2.59
2862 2923 3.146618 TCGAAGAAGACGGCAACTATC 57.853 47.619 0.00 0.00 0.00 2.08
2863 2924 3.491104 GGATCGAAGAAGACGGCAACTAT 60.491 47.826 0.00 0.00 43.58 2.12
2864 2925 2.159282 GGATCGAAGAAGACGGCAACTA 60.159 50.000 0.00 0.00 43.58 2.24
2865 2926 1.404315 GGATCGAAGAAGACGGCAACT 60.404 52.381 0.00 0.00 43.58 3.16
2866 2927 1.000145 GGATCGAAGAAGACGGCAAC 59.000 55.000 0.00 0.00 43.58 4.17
2867 2928 0.606096 TGGATCGAAGAAGACGGCAA 59.394 50.000 0.00 0.00 43.58 4.52
2868 2929 0.173481 CTGGATCGAAGAAGACGGCA 59.827 55.000 0.00 0.00 43.58 5.69
2869 2930 0.173708 ACTGGATCGAAGAAGACGGC 59.826 55.000 0.00 0.00 43.58 5.68
2870 2931 2.196295 GACTGGATCGAAGAAGACGG 57.804 55.000 0.00 0.00 43.58 4.79
2881 2942 1.576356 GATTGGACAGCGACTGGATC 58.424 55.000 10.80 0.00 35.51 3.36
2882 2943 0.179000 GGATTGGACAGCGACTGGAT 59.821 55.000 10.80 1.25 35.51 3.41
2883 2944 0.904865 AGGATTGGACAGCGACTGGA 60.905 55.000 10.80 0.00 35.51 3.86
2884 2945 0.036010 AAGGATTGGACAGCGACTGG 60.036 55.000 10.80 0.00 35.51 4.00
2885 2946 1.363744 GAAGGATTGGACAGCGACTG 58.636 55.000 5.47 5.47 37.52 3.51
2886 2947 0.250513 GGAAGGATTGGACAGCGACT 59.749 55.000 0.00 0.00 0.00 4.18
2887 2948 1.084370 CGGAAGGATTGGACAGCGAC 61.084 60.000 0.00 0.00 0.00 5.19
2888 2949 1.218047 CGGAAGGATTGGACAGCGA 59.782 57.895 0.00 0.00 0.00 4.93
2889 2950 0.807667 CTCGGAAGGATTGGACAGCG 60.808 60.000 0.00 0.00 0.00 5.18
2890 2951 0.462759 CCTCGGAAGGATTGGACAGC 60.463 60.000 0.00 0.00 46.67 4.40
2891 2952 0.179000 CCCTCGGAAGGATTGGACAG 59.821 60.000 0.00 0.00 46.67 3.51
2892 2953 1.271840 CCCCTCGGAAGGATTGGACA 61.272 60.000 0.00 0.00 46.67 4.02
2893 2954 0.981277 TCCCCTCGGAAGGATTGGAC 60.981 60.000 0.00 0.00 46.67 4.02
2894 2955 0.252974 TTCCCCTCGGAAGGATTGGA 60.253 55.000 0.00 0.00 46.67 3.53
2895 2956 2.307153 TTCCCCTCGGAAGGATTGG 58.693 57.895 0.00 0.00 46.67 3.16
2896 2957 4.404959 AGCATTCCCCTCGGAAGGATTG 62.405 54.545 7.68 11.50 45.85 2.67
2897 2958 2.257498 AGCATTCCCCTCGGAAGGATT 61.257 52.381 7.68 0.00 45.85 3.01
2901 2962 5.469667 CGATAGAGCATTCCCCTCGGAAG 62.470 56.522 0.00 0.00 46.26 3.46
2902 2963 3.660942 CGATAGAGCATTCCCCTCGGAA 61.661 54.545 0.00 0.00 46.87 4.30
2903 2964 1.633774 GATAGAGCATTCCCCTCGGA 58.366 55.000 0.00 0.00 35.88 4.55
2904 2965 0.244994 CGATAGAGCATTCCCCTCGG 59.755 60.000 0.00 0.00 39.76 4.63
2905 2966 0.389166 GCGATAGAGCATTCCCCTCG 60.389 60.000 0.00 0.00 37.05 4.63
2906 2967 0.036858 GGCGATAGAGCATTCCCCTC 60.037 60.000 0.00 0.00 39.27 4.30
2907 2968 1.821061 CGGCGATAGAGCATTCCCCT 61.821 60.000 0.00 0.00 39.27 4.79
2908 2969 1.374758 CGGCGATAGAGCATTCCCC 60.375 63.158 0.00 0.00 39.27 4.81
2909 2970 0.247736 ATCGGCGATAGAGCATTCCC 59.752 55.000 22.68 0.00 39.27 3.97
2910 2971 1.354040 CATCGGCGATAGAGCATTCC 58.646 55.000 23.53 0.00 39.27 3.01
2911 2972 0.718343 GCATCGGCGATAGAGCATTC 59.282 55.000 23.53 1.00 39.27 2.67
2912 2973 0.033920 TGCATCGGCGATAGAGCATT 59.966 50.000 23.97 0.00 45.35 3.56
2913 2974 0.248565 ATGCATCGGCGATAGAGCAT 59.751 50.000 29.34 29.34 45.35 3.79
2914 2975 0.887933 TATGCATCGGCGATAGAGCA 59.112 50.000 27.94 27.94 45.35 4.26
2915 2976 1.996292 TTATGCATCGGCGATAGAGC 58.004 50.000 23.53 21.44 45.35 4.09
2931 2992 2.168936 TCCAACAAGGCGTACCGATTAT 59.831 45.455 0.00 0.00 42.76 1.28
2971 3032 2.253603 CTGCGAAAATTACCAGCAAGC 58.746 47.619 0.00 0.00 37.38 4.01
3022 3083 1.096967 CACACTGCAGTCAAGTGCCA 61.097 55.000 18.64 0.00 43.28 4.92
3030 3091 3.826221 TGTTGCCACACTGCAGTC 58.174 55.556 18.64 6.33 43.21 3.51
3068 3136 2.023888 ACTACTCCCTACACAGCCTCAT 60.024 50.000 0.00 0.00 0.00 2.90
3069 3137 1.358103 ACTACTCCCTACACAGCCTCA 59.642 52.381 0.00 0.00 0.00 3.86
3076 3144 6.104665 GTGGACAAAATACTACTCCCTACAC 58.895 44.000 0.00 0.00 0.00 2.90
3189 3257 5.221422 CGAAAACATTGGGTGGCCATATAAT 60.221 40.000 9.72 7.12 0.00 1.28
3202 3270 5.048364 TGGTAATCAACTCCGAAAACATTGG 60.048 40.000 0.00 0.00 0.00 3.16
3212 3357 1.393539 CGCACTTGGTAATCAACTCCG 59.606 52.381 0.00 0.00 0.00 4.63
3277 3422 5.008613 GGCATCTAATTTTGCGTGGAAGATA 59.991 40.000 0.00 0.00 39.78 1.98
3278 3423 4.202050 GGCATCTAATTTTGCGTGGAAGAT 60.202 41.667 0.00 0.00 39.78 2.40
3285 3430 2.356135 AGTCGGCATCTAATTTTGCGT 58.644 42.857 0.00 0.00 39.78 5.24
3319 3464 3.372206 GCTACATAGCCAACAGTGAAGTG 59.628 47.826 0.00 0.00 43.39 3.16
3364 3513 3.640967 CTCTCCCCCAATCAGAACTAGAG 59.359 52.174 0.00 0.00 0.00 2.43
3370 3519 0.549902 TGCCTCTCCCCCAATCAGAA 60.550 55.000 0.00 0.00 0.00 3.02
3377 3526 0.178873 AGTTAACTGCCTCTCCCCCA 60.179 55.000 7.48 0.00 0.00 4.96
3382 3531 9.478768 GGTCTAATTTATAGTTAACTGCCTCTC 57.521 37.037 18.56 0.00 0.00 3.20
3383 3532 8.989131 TGGTCTAATTTATAGTTAACTGCCTCT 58.011 33.333 18.56 1.34 0.00 3.69
3385 3534 8.769359 ACTGGTCTAATTTATAGTTAACTGCCT 58.231 33.333 18.56 5.50 0.00 4.75
3386 3535 8.959705 ACTGGTCTAATTTATAGTTAACTGCC 57.040 34.615 18.56 5.40 0.00 4.85
3418 3580 8.612619 AGTGGTCAATAATGTCGATCAATTTAC 58.387 33.333 0.00 0.00 0.00 2.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.