AutoCloner

Multiple sequence alignment - TraesCS2D01G151500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G151500	chr2D	100.000	3590	0	0	1	3590	94867486	94871075	0.000000e+00	6630.0
1	TraesCS2D01G151500	chr2D	82.297	627	71	27	2997	3590	647119920	647119301	1.150000e-139	507.0
2	TraesCS2D01G151500	chr2D	95.349	43	2	0	2909	2951	369702827	369702785	6.430000e-08	69.4
3	TraesCS2D01G151500	chr2B	96.630	2018	61	4	784	2796	146715998	146718013	0.000000e+00	3343.0
4	TraesCS2D01G151500	chr2B	91.882	813	49	8	2795	3590	146718118	146718930	0.000000e+00	1120.0
5	TraesCS2D01G151500	chr2B	89.286	812	39	19	1	785	146715154	146715944	0.000000e+00	974.0
6	TraesCS2D01G151500	chr1B	90.406	2043	127	28	622	2601	671258422	671260458	0.000000e+00	2623.0
7	TraesCS2D01G151500	chr1B	89.643	2018	122	48	905	2883	678469833	678471802	0.000000e+00	2488.0
8	TraesCS2D01G151500	chr1B	91.667	156	8	5	2677	2829	671260454	671260607	1.010000e-50	211.0
9	TraesCS2D01G151500	chr1B	79.235	183	15	9	622	795	678469521	678469689	4.900000e-19	106.0
10	TraesCS2D01G151500	chr1B	100.000	29	0	0	2883	2911	678471838	678471866	2.000000e-03	54.7
11	TraesCS2D01G151500	chr1D	92.038	1884	81	29	966	2822	427704769	427706610	0.000000e+00	2584.0
12	TraesCS2D01G151500	chr1D	90.471	1973	102	33	966	2883	487224156	487222215	0.000000e+00	2523.0
13	TraesCS2D01G151500	chr1D	91.512	1720	114	18	905	2601	482993618	482991908	0.000000e+00	2338.0
14	TraesCS2D01G151500	chr1D	82.310	277	22	14	614	870	482994757	482994488	7.810000e-52	215.0
15	TraesCS2D01G151500	chr1D	89.032	155	14	3	2677	2830	482991912	482991760	4.730000e-44	189.0
16	TraesCS2D01G151500	chr1D	93.902	82	5	0	994	1075	482994452	482994371	1.350000e-24	124.0
17	TraesCS2D01G151500	chr1D	85.484	124	6	3	679	794	487224604	487224485	6.300000e-23	119.0
18	TraesCS2D01G151500	chr1A	92.779	1731	84	19	966	2663	584809175	584807453	0.000000e+00	2466.0
19	TraesCS2D01G151500	chr1A	91.092	1740	110	17	907	2601	579171864	579173603	0.000000e+00	2313.0
20	TraesCS2D01G151500	chr1A	79.567	323	26	12	614	903	584809630	584809315	1.020000e-45	195.0
21	TraesCS2D01G151500	chr1A	89.189	148	13	3	2677	2823	579173599	579173744	7.920000e-42	182.0
22	TraesCS2D01G151500	chr1A	79.783	277	30	13	614	878	579171527	579171789	1.020000e-40	178.0
23	TraesCS2D01G151500	chr3B	88.906	649	59	8	2954	3590	640081631	640082278	0.000000e+00	787.0
24	TraesCS2D01G151500	chr3B	84.103	195	29	2	3398	3590	24528251	24528445	1.700000e-43	187.0
25	TraesCS2D01G151500	chr7D	78.410	931	186	14	1097	2021	478080283	478081204	3.090000e-165	592.0
26	TraesCS2D01G151500	chr3D	80.938	682	85	31	2947	3590	477637080	477637754	6.920000e-137	497.0
27	TraesCS2D01G151500	chr3A	87.559	426	41	10	2985	3399	63554067	63553643	1.940000e-132	483.0
28	TraesCS2D01G151500	chr3A	85.084	476	50	15	2947	3403	24763232	24762759	1.950000e-127	466.0
29	TraesCS2D01G151500	chr3A	85.024	414	53	9	2997	3403	245609851	245609440	2.580000e-111	412.0
30	TraesCS2D01G151500	chr7A	87.324	426	42	9	2985	3399	466504072	466503648	9.020000e-131	477.0
31	TraesCS2D01G151500	chr7A	85.301	415	50	11	2997	3403	115529963	115530374	5.540000e-113	418.0
32	TraesCS2D01G151500	chr4D	84.696	477	48	20	2947	3403	201909122	201908651	1.520000e-123	453.0
33	TraesCS2D01G151500	chr6D	81.117	376	24	20	614	949	56206381	56206749	1.280000e-64	257.0
34	TraesCS2D01G151500	chr6D	85.981	107	6	6	614	711	56194948	56195054	4.900000e-19	106.0
35	TraesCS2D01G151500	chr2A	75.391	256	52	11	2322	2572	72812843	72812594	2.930000e-21	113.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G151500	chr2D	94867486	94871075	3589	False	6630.000000	6630	100.000000	1	3590	1	chr2D.!!$F1	3589
1	TraesCS2D01G151500	chr2D	647119301	647119920	619	True	507.000000	507	82.297000	2997	3590	1	chr2D.!!$R2	593
2	TraesCS2D01G151500	chr2B	146715154	146718930	3776	False	1812.333333	3343	92.599333	1	3590	3	chr2B.!!$F1	3589
3	TraesCS2D01G151500	chr1B	671258422	671260607	2185	False	1417.000000	2623	91.036500	622	2829	2	chr1B.!!$F1	2207
4	TraesCS2D01G151500	chr1B	678469521	678471866	2345	False	882.900000	2488	89.626000	622	2911	3	chr1B.!!$F2	2289
5	TraesCS2D01G151500	chr1D	427704769	427706610	1841	False	2584.000000	2584	92.038000	966	2822	1	chr1D.!!$F1	1856
6	TraesCS2D01G151500	chr1D	487222215	487224604	2389	True	1321.000000	2523	87.977500	679	2883	2	chr1D.!!$R2	2204
7	TraesCS2D01G151500	chr1D	482991760	482994757	2997	True	716.500000	2338	89.189000	614	2830	4	chr1D.!!$R1	2216
8	TraesCS2D01G151500	chr1A	584807453	584809630	2177	True	1330.500000	2466	86.173000	614	2663	2	chr1A.!!$R1	2049
9	TraesCS2D01G151500	chr1A	579171527	579173744	2217	False	891.000000	2313	86.688000	614	2823	3	chr1A.!!$F1	2209
10	TraesCS2D01G151500	chr3B	640081631	640082278	647	False	787.000000	787	88.906000	2954	3590	1	chr3B.!!$F2	636
11	TraesCS2D01G151500	chr7D	478080283	478081204	921	False	592.000000	592	78.410000	1097	2021	1	chr7D.!!$F1	924
12	TraesCS2D01G151500	chr3D	477637080	477637754	674	False	497.000000	497	80.938000	2947	3590	1	chr3D.!!$F1	643

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Hairpin	End Stability	Orientation
461	463	0.108281	GGAGGAAGTACCGGCTGAAC	60.108	60.0	44.74	3.18	F
1067	2219	0.107993	TGCATCCTCTCGGCTCAAAG	60.108	55.0	0.00	2.77	F
1182	2349	0.980231	CCTACTCTGCCCTCCTGCTT	60.980	60.0	0.00	3.91	F

Position	MSA Position	Penalty	Sequence	TM	GC	Hairpin	End Stability	Orientation
1886	3059	1.177401	CAAAGCCTGGAAAGTAGCCC	58.823	55.0	0.00	5.19	R
2559	3735	0.470080	CAGCGGGAAGAGGAGGGATA	60.470	60.0	0.00	2.59	R
2875	4200	0.872451	TTGCGTGTCCGTGTAGTGTG	60.872	55.0	36.15	3.82	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
69	70	7.487822	TTTGGGCATCAAATGGTAAAATAGA	57.512	32.000	1.07	0.00	40.14	1.98
94	95	1.288439	CTCCTCGATCGGCTCATGG	59.712	63.158	16.41	8.31	0.00	3.66
155	156	3.572682	AGATGGGGACGGAAAAAGTTTTC	59.427	43.478	0.32	7.81	44.38	2.29
223	225	2.418083	GCTTTTCTGGGGATGCCCG	61.418	63.158	18.66	12.53	46.66	6.13
235	237	2.575532	GGATGCCCGATCAAAAGATCA	58.424	47.619	6.32	0.00	31.91	2.92
246	248	5.613358	ATCAAAAGATCAAAGTCGTGGAC	57.387	39.130	0.00	0.00	0.00	4.02
254	256	2.036733	TCAAAGTCGTGGACCTCGAAAT	59.963	45.455	19.49	9.31	39.01	2.17
336	338	3.245052	CCAAACCCTTCAAGGATGAGTCT	60.245	47.826	4.43	0.00	37.67	3.24
337	339	3.710209	AACCCTTCAAGGATGAGTCTG	57.290	47.619	4.43	0.00	37.67	3.51
367	369	7.121611	GGACTTTTAAAGGATTTATCGGTTGGA	59.878	37.037	9.64	0.00	40.76	3.53
386	388	2.171448	GGAGCCAGAGATCTTTGCCTAA	59.829	50.000	7.74	0.00	0.00	2.69
414	416	4.267452	GCTAGCGAAAGAAGTTGAGATGAG	59.733	45.833	0.00	0.00	0.00	2.90
444	446	1.354101	ACCGTGGGATTGTACAAGGA	58.646	50.000	14.65	0.00	38.31	3.36
446	448	1.406887	CCGTGGGATTGTACAAGGAGG	60.407	57.143	14.65	7.53	38.31	4.30
452	454	4.224370	TGGGATTGTACAAGGAGGAAGTAC	59.776	45.833	14.65	0.00	38.79	2.73
453	455	4.383880	GGGATTGTACAAGGAGGAAGTACC	60.384	50.000	14.65	0.68	37.82	3.34
456	458	1.134877	GTACAAGGAGGAAGTACCGGC	60.135	57.143	0.00	0.00	44.74	6.13
461	463	0.108281	GGAGGAAGTACCGGCTGAAC	60.108	60.000	0.00	0.00	44.74	3.18
478	480	1.830587	AACCTCAGCTCGGTGCATCA	61.831	55.000	5.03	0.00	45.94	3.07
480	482	1.364626	CCTCAGCTCGGTGCATCAAC	61.365	60.000	0.00	0.00	45.94	3.18
499	512	7.409343	GCATCAACGTAAGAAAACATAGCAAAC	60.409	37.037	0.00	0.00	43.62	2.93
500	513	7.017498	TCAACGTAAGAAAACATAGCAAACA	57.983	32.000	0.00	0.00	43.62	2.83
501	514	7.644490	TCAACGTAAGAAAACATAGCAAACAT	58.356	30.769	0.00	0.00	43.62	2.71
505	518	9.308318	ACGTAAGAAAACATAGCAAACATTTTT	57.692	25.926	0.00	0.00	43.62	1.94
550	564	6.422701	GGGCATGATCATGAACAAATGTTATG	59.577	38.462	34.65	9.12	41.20	1.90
619	639	7.899178	AAAAAGATAAAATTACAAAGGGGCG	57.101	32.000	0.00	0.00	0.00	6.13
620	640	6.599356	AAAGATAAAATTACAAAGGGGCGT	57.401	33.333	0.00	0.00	0.00	5.68
634	654	1.508088	GGCGTCATCTTTTGCAGGG	59.492	57.895	0.00	0.00	0.00	4.45
655	675	2.289506	GGCTCTACCAAACGAGGAAACT	60.290	50.000	0.00	0.00	41.18	2.66
763	1574	6.080009	GGGGTGAAGTGGATTAGTATAGGTA	58.920	44.000	0.00	0.00	0.00	3.08
766	1577	7.153315	GGTGAAGTGGATTAGTATAGGTAAGC	58.847	42.308	0.00	0.00	0.00	3.09
874	1852	6.073657	CCTTTTTCGTGTACGGAACTTATTGA	60.074	38.462	4.44	0.00	36.44	2.57
949	2058	4.891992	ACAGTTGCCGCCTTCTATATAT	57.108	40.909	0.00	0.00	0.00	0.86
964	2077	9.008965	CCTTCTATATATATAGCACGCATCTCT	57.991	37.037	20.69	0.00	36.47	3.10
1067	2219	0.107993	TGCATCCTCTCGGCTCAAAG	60.108	55.000	0.00	0.00	0.00	2.77
1071	2223	1.004560	CCTCTCGGCTCAAAGCACA	60.005	57.895	0.86	0.00	44.75	4.57
1182	2349	0.980231	CCTACTCTGCCCTCCTGCTT	60.980	60.000	0.00	0.00	0.00	3.91
1375	2548	1.073199	GTCCACCTCCACAACCAGG	59.927	63.158	0.00	0.00	35.69	4.45
1424	2597	4.124351	GGCGATCCACGTCGACCA	62.124	66.667	10.58	0.00	43.76	4.02
1902	3075	2.990479	CGGGCTACTTTCCAGGCT	59.010	61.111	0.00	0.00	38.56	4.58
2230	3403	2.279717	GCAGCATCTCGCCATCGA	60.280	61.111	0.00	0.00	44.04	3.59
2436	3609	1.359459	GGACGAATGAGTTGGACGGC	61.359	60.000	0.00	0.00	0.00	5.68
2550	3726	5.008118	GGATCCCGATGATTTCTTCAAGAAC	59.992	44.000	0.00	0.00	38.03	3.01
2559	3735	3.735237	TTCTTCAAGAACGAGCAGAGT	57.265	42.857	0.00	0.00	0.00	3.24
2830	4152	7.201857	GGAATGATATTGTCCCTTTCTCCAAAG	60.202	40.741	0.00	0.00	39.11	2.77
2870	4195	2.305635	TGTGATAGGTGTGTCCTTGCAT	59.694	45.455	0.00	0.00	45.67	3.96
2875	4200	1.956477	AGGTGTGTCCTTGCATGAAAC	59.044	47.619	0.00	0.72	45.67	2.78
2939	4300	2.863809	ACACCAGGACTTGACAAATCC	58.136	47.619	7.62	7.62	0.00	3.01
2977	4341	0.529378	GTACGAGTTGACCCCGACAT	59.471	55.000	0.00	0.00	0.00	3.06
3013	4378	6.183810	TGATTCTACTCGAGTACCCATAGA	57.816	41.667	21.25	14.61	0.00	1.98
3031	4396	9.482175	ACCCATAGAGATAGTAAATATGACTCC	57.518	37.037	0.00	0.00	0.00	3.85
3122	4487	4.166187	GAAGCATTTCACTTCCCTCAAC	57.834	45.455	0.00	0.00	38.05	3.18
3135	4500	3.427573	TCCCTCAACATAGAGTTCGTGA	58.572	45.455	0.00	0.00	38.74	4.35
3176	4541	6.712095	GGCACATATCATCTTTCACCAGATTA	59.288	38.462	0.00	0.00	30.50	1.75
3265	4640	5.767665	ACAAATGTCATGTACCAAAGTGCTA	59.232	36.000	0.00	0.00	0.00	3.49
3441	4840	1.967779	GGCTTCAAACCTTTGCCCTTA	59.032	47.619	0.00	0.00	38.05	2.69
3459	4858	4.065789	CCTTAAGGTCCTTTGTGTCTCAC	58.934	47.826	13.83	0.00	34.56	3.51
3517	4916	9.751542	GATCTGGATTGATATAATACCTTACGG	57.248	37.037	0.00	0.00	0.00	4.02
3576	4979	3.226777	CTCCGACTAGAGGTGAATCCAT	58.773	50.000	0.00	0.00	39.02	3.41

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
10	11	3.764466	CGCTTGACCCGCTCTCCT	61.764	66.667	0.00	0.00	0.00	3.69
69	70	1.739338	GCCGATCGAGGAGGTGATGT	61.739	60.000	18.66	0.00	0.00	3.06
107	108	9.653516	TCTAGATCTAGAAACTCTTTGATGGAT	57.346	33.333	26.79	0.00	39.08	3.41
108	109	9.130661	CTCTAGATCTAGAAACTCTTTGATGGA	57.869	37.037	28.13	5.66	41.22	3.41
109	110	9.130661	TCTCTAGATCTAGAAACTCTTTGATGG	57.869	37.037	28.13	14.63	41.22	3.51
112	113	9.130661	CCATCTCTAGATCTAGAAACTCTTTGA	57.869	37.037	28.13	20.25	41.22	2.69
113	114	8.359642	CCCATCTCTAGATCTAGAAACTCTTTG	58.640	40.741	28.13	16.42	41.22	2.77
114	115	7.508977	CCCCATCTCTAGATCTAGAAACTCTTT	59.491	40.741	28.13	2.51	41.22	2.52
115	116	7.010160	CCCCATCTCTAGATCTAGAAACTCTT	58.990	42.308	28.13	10.58	41.22	2.85
116	117	6.334237	TCCCCATCTCTAGATCTAGAAACTCT	59.666	42.308	28.13	11.90	41.22	3.24
117	118	6.433093	GTCCCCATCTCTAGATCTAGAAACTC	59.567	46.154	28.13	12.67	41.22	3.01
118	119	6.311735	GTCCCCATCTCTAGATCTAGAAACT	58.688	44.000	28.13	15.46	41.22	2.66
119	120	5.182380	CGTCCCCATCTCTAGATCTAGAAAC	59.818	48.000	28.13	17.06	41.22	2.78
120	121	5.317808	CGTCCCCATCTCTAGATCTAGAAA	58.682	45.833	28.13	19.32	41.22	2.52
121	122	4.263550	CCGTCCCCATCTCTAGATCTAGAA	60.264	50.000	28.13	20.18	41.22	2.10
122	123	3.264706	CCGTCCCCATCTCTAGATCTAGA	59.735	52.174	27.00	27.00	39.67	2.43
123	124	3.264706	TCCGTCCCCATCTCTAGATCTAG	59.735	52.174	21.81	21.81	31.21	2.43
124	125	3.257578	TCCGTCCCCATCTCTAGATCTA	58.742	50.000	1.69	1.69	31.21	1.98
125	126	2.066592	TCCGTCCCCATCTCTAGATCT	58.933	52.381	0.00	0.00	31.21	2.75
126	127	2.588464	TCCGTCCCCATCTCTAGATC	57.412	55.000	0.00	0.00	31.21	2.75
127	128	3.330126	TTTCCGTCCCCATCTCTAGAT	57.670	47.619	0.00	0.00	34.56	1.98
128	129	2.840640	TTTCCGTCCCCATCTCTAGA	57.159	50.000	0.00	0.00	0.00	2.43
129	130	3.197983	ACTTTTTCCGTCCCCATCTCTAG	59.802	47.826	0.00	0.00	0.00	2.43
130	131	3.178865	ACTTTTTCCGTCCCCATCTCTA	58.821	45.455	0.00	0.00	0.00	2.43
131	132	1.985895	ACTTTTTCCGTCCCCATCTCT	59.014	47.619	0.00	0.00	0.00	3.10
132	133	2.491675	ACTTTTTCCGTCCCCATCTC	57.508	50.000	0.00	0.00	0.00	2.75
155	156	2.812011	CCTCAACTTAAAACTCGGTGGG	59.188	50.000	0.00	0.00	0.00	4.61
159	160	4.091509	CGATGACCTCAACTTAAAACTCGG	59.908	45.833	0.00	0.00	0.00	4.63
161	162	5.927115	ACTCGATGACCTCAACTTAAAACTC	59.073	40.000	0.00	0.00	0.00	3.01
223	225	5.390991	GGTCCACGACTTTGATCTTTTGATC	60.391	44.000	0.00	0.00	42.52	2.92
235	237	2.685100	GATTTCGAGGTCCACGACTTT	58.315	47.619	11.20	0.00	39.46	2.66
246	248	4.106197	CCTAGACTTTCACGATTTCGAGG	58.894	47.826	7.01	0.00	43.02	4.63
254	256	2.244695	TGCCTTCCTAGACTTTCACGA	58.755	47.619	0.00	0.00	0.00	4.35
301	303	1.471287	GGGTTTGGAATTCTACACGGC	59.529	52.381	5.23	0.00	0.00	5.68
336	338	7.284489	CCGATAAATCCTTTAAAAGTCCATCCA	59.716	37.037	0.00	0.00	0.00	3.41
337	339	7.284716	ACCGATAAATCCTTTAAAAGTCCATCC	59.715	37.037	0.00	0.00	0.00	3.51
386	388	4.072131	TCAACTTCTTTCGCTAGCCATTT	58.928	39.130	9.66	0.00	0.00	2.32
414	416	0.685458	TCCCACGGTAGGAGCTAACC	60.685	60.000	0.00	0.00	0.00	2.85
444	446	0.544595	AGGTTCAGCCGGTACTTCCT	60.545	55.000	1.90	3.45	43.70	3.36
446	448	0.606604	TGAGGTTCAGCCGGTACTTC	59.393	55.000	1.90	3.47	43.70	3.01
456	458	1.739562	GCACCGAGCTGAGGTTCAG	60.740	63.158	7.69	1.75	46.90	3.02
461	463	1.078918	TTGATGCACCGAGCTGAGG	60.079	57.895	0.00	0.00	45.94	3.86
478	480	8.865590	AAATGTTTGCTATGTTTTCTTACGTT	57.134	26.923	0.00	0.00	0.00	3.99
512	525	8.415553	TCATGATCATGCCCATAAAGTTTTAAG	58.584	33.333	27.68	1.17	38.65	1.85
525	539	4.395959	ACATTTGTTCATGATCATGCCC	57.604	40.909	27.68	20.18	38.65	5.36
526	540	6.422701	CCATAACATTTGTTCATGATCATGCC	59.577	38.462	27.68	20.49	39.31	4.40
528	542	6.926826	CCCCATAACATTTGTTCATGATCATG	59.073	38.462	26.79	26.79	39.31	3.07
550	564	0.955905	TCAAACTTTACAAGCGCCCC	59.044	50.000	2.29	0.00	0.00	5.80
619	639	0.813821	GAGCCCCTGCAAAAGATGAC	59.186	55.000	0.00	0.00	41.13	3.06
620	640	0.700564	AGAGCCCCTGCAAAAGATGA	59.299	50.000	0.00	0.00	41.13	2.92
634	654	2.074576	GTTTCCTCGTTTGGTAGAGCC	58.925	52.381	0.00	0.00	33.39	4.70
655	675	3.839979	AACAGGCTGGGCTGTTTTA	57.160	47.368	28.53	0.00	40.43	1.52
874	1852	5.197451	TGAAGAAATGGTTACACAACTGGT	58.803	37.500	0.00	0.00	34.88	4.00
949	2058	1.197949	GAGCGAGAGATGCGTGCTATA	59.802	52.381	0.00	0.00	35.73	1.31
964	2077	0.740868	GCAACTATGGCTGTGAGCGA	60.741	55.000	0.00	0.00	43.62	4.93
1067	2219	1.271379	TGGAAGCTAAAGAGGGTGTGC	60.271	52.381	0.00	0.00	0.00	4.57
1071	2223	1.003696	GCACTGGAAGCTAAAGAGGGT	59.996	52.381	0.00	0.00	37.60	4.34
1593	2766	2.974489	GACGTTGTCGGCGGAGAGA	61.974	63.158	7.21	0.00	41.85	3.10
1886	3059	1.177401	CAAAGCCTGGAAAGTAGCCC	58.823	55.000	0.00	0.00	0.00	5.19
1902	3075	1.439644	GCACCGGCCAAGAAACAAA	59.560	52.632	0.00	0.00	0.00	2.83
1980	3153	1.685224	CCAGCTAACCTCCTGGCAA	59.315	57.895	0.00	0.00	41.86	4.52
2436	3609	2.544480	TCTCATAGCTCGTCACGTTG	57.456	50.000	0.00	0.00	0.00	4.10
2550	3726	1.243902	GAGGAGGGATACTCTGCTCG	58.756	60.000	4.58	0.00	45.83	5.03
2559	3735	0.470080	CAGCGGGAAGAGGAGGGATA	60.470	60.000	0.00	0.00	0.00	2.59
2823	4145	1.303643	GCCCAGTCACCCTTTGGAG	60.304	63.158	0.00	0.00	33.76	3.86
2830	4152	2.266055	CGAAGAGCCCAGTCACCC	59.734	66.667	0.00	0.00	0.00	4.61
2831	4153	2.435059	GCGAAGAGCCCAGTCACC	60.435	66.667	0.00	0.00	40.81	4.02
2870	4195	2.542597	GTGTCCGTGTAGTGTGTTTCA	58.457	47.619	0.00	0.00	0.00	2.69
2875	4200	0.872451	TTGCGTGTCCGTGTAGTGTG	60.872	55.000	0.00	0.00	36.15	3.82
2925	4286	1.087501	GAGGCGGATTTGTCAAGTCC	58.912	55.000	15.45	15.45	0.00	3.85
2977	4341	6.265422	TCGAGTAGAATCAAGGATGCTTATCA	59.735	38.462	0.00	0.00	29.55	2.15
3031	4396	7.426456	GCGATGATGTAATTGTTGTCTTAACTG	59.574	37.037	0.00	0.00	0.00	3.16
3036	4401	4.391830	ACGCGATGATGTAATTGTTGTCTT	59.608	37.500	15.93	0.00	0.00	3.01
3119	4484	6.201615	ACATATGCATCACGAACTCTATGTTG	59.798	38.462	0.19	0.00	39.30	3.33
3122	4487	5.347093	GGACATATGCATCACGAACTCTATG	59.653	44.000	0.19	0.00	0.00	2.23
3135	4500	2.026641	GTGCCTTGTGGACATATGCAT	58.973	47.619	3.79	3.79	34.57	3.96
3176	4541	7.125356	GTCTATATATGGATTTCTACGGGGGTT	59.875	40.741	1.74	0.00	0.00	4.11
3441	4840	2.771943	TCTGTGAGACACAAAGGACCTT	59.228	45.455	0.00	0.00	44.08	3.50
3459	4858	5.303165	TGGCTCTTATGTATCAGCAATCTG	58.697	41.667	0.00	0.00	41.67	2.90

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.