Multiple sequence alignment - TraesCS2D01G151400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G151400 chr2D 100.000 6202 0 0 1 6202 94342980 94336779 0.000000e+00 11454.0
1 TraesCS2D01G151400 chr2D 80.696 316 55 3 5878 6192 404407324 404407634 2.230000e-59 241.0
2 TraesCS2D01G151400 chr2A 92.497 2679 131 27 266 2902 92341287 92338637 0.000000e+00 3770.0
3 TraesCS2D01G151400 chr2A 89.227 1578 110 38 3811 5360 92337661 92336116 0.000000e+00 1917.0
4 TraesCS2D01G151400 chr2A 91.494 917 59 12 2900 3805 92338608 92337700 0.000000e+00 1243.0
5 TraesCS2D01G151400 chr2A 86.385 213 26 3 5981 6192 30337171 30337381 4.840000e-56 230.0
6 TraesCS2D01G151400 chr2A 79.487 156 32 0 5800 5955 160699730 160699885 1.830000e-20 111.0
7 TraesCS2D01G151400 chr2B 92.916 2188 106 24 752 2913 146639127 146636963 0.000000e+00 3136.0
8 TraesCS2D01G151400 chr2B 89.497 2523 180 49 2900 5360 146636948 146634449 0.000000e+00 3112.0
9 TraesCS2D01G151400 chr2B 88.132 514 41 9 266 759 146639908 146639395 1.490000e-165 593.0
10 TraesCS2D01G151400 chr2B 91.943 422 21 5 4949 5361 146615262 146614845 4.170000e-161 579.0
11 TraesCS2D01G151400 chr2B 88.636 176 18 2 85 259 146640060 146639886 4.870000e-51 213.0
12 TraesCS2D01G151400 chr2B 94.488 127 7 0 4828 4954 146627939 146627813 4.900000e-46 196.0
13 TraesCS2D01G151400 chr1B 79.554 538 87 20 5679 6199 537317365 537317896 4.570000e-96 363.0
14 TraesCS2D01G151400 chr1B 95.122 41 2 0 5797 5837 686875786 686875826 1.440000e-06 65.8
15 TraesCS2D01G151400 chr6D 84.452 283 44 0 5914 6196 78250223 78250505 4.730000e-71 279.0
16 TraesCS2D01G151400 chr5D 76.923 481 96 13 5724 6193 203072924 203073400 6.170000e-65 259.0
17 TraesCS2D01G151400 chr6B 75.288 607 108 32 5612 6194 521470928 521471516 1.030000e-62 252.0
18 TraesCS2D01G151400 chr5A 76.245 522 97 12 5691 6202 653045706 653045202 1.030000e-62 252.0
19 TraesCS2D01G151400 chr4A 76.190 525 97 24 5686 6194 599829883 599830395 1.030000e-62 252.0
20 TraesCS2D01G151400 chr4A 76.000 525 98 24 5686 6194 599826347 599826859 4.800000e-61 246.0
21 TraesCS2D01G151400 chr4A 76.181 529 90 29 5686 6194 599828115 599828627 4.800000e-61 246.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G151400 chr2D 94336779 94342980 6201 True 11454.0 11454 100.000000 1 6202 1 chr2D.!!$R1 6201
1 TraesCS2D01G151400 chr2A 92336116 92341287 5171 True 2310.0 3770 91.072667 266 5360 3 chr2A.!!$R1 5094
2 TraesCS2D01G151400 chr2B 146634449 146640060 5611 True 1763.5 3136 89.795250 85 5360 4 chr2B.!!$R3 5275
3 TraesCS2D01G151400 chr1B 537317365 537317896 531 False 363.0 363 79.554000 5679 6199 1 chr1B.!!$F1 520
4 TraesCS2D01G151400 chr6B 521470928 521471516 588 False 252.0 252 75.288000 5612 6194 1 chr6B.!!$F1 582
5 TraesCS2D01G151400 chr5A 653045202 653045706 504 True 252.0 252 76.245000 5691 6202 1 chr5A.!!$R1 511
6 TraesCS2D01G151400 chr4A 599826347 599830395 4048 False 248.0 252 76.123667 5686 6194 3 chr4A.!!$F1 508

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
227 229 0.044092 TGCCCCTCCTTACAGATGGA 59.956 55.000 0.00 0.00 0.00 3.41 F
1195 1499 0.114168 AGCTCCACTCAGTGAGTCCT 59.886 55.000 23.08 13.35 41.37 3.85 F
1253 1561 0.179097 TTTTTGGCTGTTTGGACGCC 60.179 50.000 0.00 0.00 42.16 5.68 F
1261 1569 0.953471 TGTTTGGACGCCGGATCTTG 60.953 55.000 5.05 0.00 0.00 3.02 F
1276 1584 1.110442 TCTTGTGTGGCTTGGTTTGG 58.890 50.000 0.00 0.00 0.00 3.28 F
2703 3031 1.434696 GAAATCTGGCACCGGCATG 59.565 57.895 0.00 0.00 43.71 4.06 F
3459 3828 0.631753 TTCCCAACCCTGTTGAACCA 59.368 50.000 8.47 0.00 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1273 1581 0.034198 TCAACATTCGACTCGCCCAA 59.966 50.000 0.00 0.00 0.00 4.12 R
2098 2425 0.467290 GTTGCCCACTCCCTGAAACA 60.467 55.000 0.00 0.00 0.00 2.83 R
3177 3543 2.436417 TCACTTGCTGCTAATTGGACC 58.564 47.619 0.00 0.00 0.00 4.46 R
3227 3593 3.446161 ACAGATGCAATGTTCCAATGGAG 59.554 43.478 0.86 0.00 31.21 3.86 R
3237 3603 6.264292 TGTTAAACCTACAACAGATGCAATGT 59.736 34.615 2.25 2.25 31.29 2.71 R
4293 4734 0.179004 ATCGGTGGAAACCAACTGCA 60.179 50.000 4.33 0.00 39.46 4.41 R
5364 5823 0.175760 ATGTAGCGCGTCCAACATCT 59.824 50.000 8.43 0.00 0.00 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.622701 GGCAACTTCTTAGCTTATGGTG 57.377 45.455 0.00 0.00 0.00 4.17
24 25 3.181496 GGCAACTTCTTAGCTTATGGTGC 60.181 47.826 0.00 0.98 0.00 5.01
25 26 3.691609 GCAACTTCTTAGCTTATGGTGCT 59.308 43.478 0.00 0.00 43.79 4.40
26 27 4.876107 GCAACTTCTTAGCTTATGGTGCTA 59.124 41.667 0.00 0.00 41.46 3.49
27 28 5.354234 GCAACTTCTTAGCTTATGGTGCTAA 59.646 40.000 0.00 7.76 46.68 3.09
54 55 1.144969 TTTTGTTAGAGGCAGACGCG 58.855 50.000 3.53 3.53 39.92 6.01
55 56 1.289109 TTTGTTAGAGGCAGACGCGC 61.289 55.000 5.73 0.00 39.92 6.86
56 57 2.126071 GTTAGAGGCAGACGCGCA 60.126 61.111 5.73 0.00 39.92 6.09
57 58 2.126071 TTAGAGGCAGACGCGCAC 60.126 61.111 5.73 0.00 39.92 5.34
58 59 2.926420 TTAGAGGCAGACGCGCACA 61.926 57.895 5.73 0.00 39.92 4.57
59 60 3.626680 TAGAGGCAGACGCGCACAC 62.627 63.158 5.73 0.00 39.92 3.82
63 64 2.733218 GCAGACGCGCACACTGTA 60.733 61.111 20.59 0.00 34.60 2.74
64 65 2.094659 GCAGACGCGCACACTGTAT 61.095 57.895 20.59 1.17 34.60 2.29
65 66 0.800683 GCAGACGCGCACACTGTATA 60.801 55.000 20.59 0.00 34.60 1.47
66 67 1.191944 CAGACGCGCACACTGTATAG 58.808 55.000 5.73 0.00 0.00 1.31
67 68 1.092348 AGACGCGCACACTGTATAGA 58.908 50.000 5.73 0.00 0.00 1.98
68 69 1.064208 AGACGCGCACACTGTATAGAG 59.936 52.381 5.73 0.00 0.00 2.43
69 70 0.100682 ACGCGCACACTGTATAGAGG 59.899 55.000 5.73 0.00 0.00 3.69
70 71 1.209275 CGCGCACACTGTATAGAGGC 61.209 60.000 8.75 0.00 0.00 4.70
71 72 0.179111 GCGCACACTGTATAGAGGCA 60.179 55.000 0.30 0.00 0.00 4.75
72 73 1.739035 GCGCACACTGTATAGAGGCAA 60.739 52.381 0.30 0.00 0.00 4.52
73 74 1.927174 CGCACACTGTATAGAGGCAAC 59.073 52.381 1.49 0.00 0.00 4.17
74 75 2.280628 GCACACTGTATAGAGGCAACC 58.719 52.381 1.49 0.00 37.17 3.77
75 76 2.093447 GCACACTGTATAGAGGCAACCT 60.093 50.000 1.49 0.00 36.03 3.50
87 88 3.875125 GAGGCAACCTCTAAACCCTTAG 58.125 50.000 6.38 0.00 46.41 2.18
101 102 9.543231 TCTAAACCCTTAGAGACAATCTTAGAA 57.457 33.333 0.00 0.00 38.89 2.10
113 114 8.457238 AGACAATCTTAGAAGCAAGAAAAAGT 57.543 30.769 0.00 0.00 38.03 2.66
120 121 8.292448 TCTTAGAAGCAAGAAAAAGTATGCAAG 58.708 33.333 0.00 0.00 41.18 4.01
121 122 5.225642 AGAAGCAAGAAAAAGTATGCAAGC 58.774 37.500 0.00 0.00 41.18 4.01
144 145 4.201685 CGTAGGTGCTCTTATGGTTTTTCG 60.202 45.833 0.00 0.00 0.00 3.46
180 181 4.100498 TCCGTCACTCAAAGTCCTTTAACT 59.900 41.667 0.00 0.00 0.00 2.24
181 182 4.211374 CCGTCACTCAAAGTCCTTTAACTG 59.789 45.833 0.00 0.00 0.00 3.16
204 205 7.712639 ACTGTGACATATACATTTCTAAGGCAG 59.287 37.037 0.00 0.00 0.00 4.85
221 223 1.821666 GCAGTTTTGCCCCTCCTTACA 60.822 52.381 0.00 0.00 44.74 2.41
225 227 2.755103 GTTTTGCCCCTCCTTACAGATG 59.245 50.000 0.00 0.00 0.00 2.90
227 229 0.044092 TGCCCCTCCTTACAGATGGA 59.956 55.000 0.00 0.00 0.00 3.41
231 233 2.370189 CCCCTCCTTACAGATGGACATC 59.630 54.545 4.15 4.15 38.09 3.06
233 235 4.483950 CCCTCCTTACAGATGGACATCTA 58.516 47.826 13.97 0.00 45.78 1.98
234 236 4.901849 CCCTCCTTACAGATGGACATCTAA 59.098 45.833 13.97 6.03 45.78 2.10
235 237 5.221541 CCCTCCTTACAGATGGACATCTAAC 60.222 48.000 13.97 0.00 45.78 2.34
236 238 5.600484 CCTCCTTACAGATGGACATCTAACT 59.400 44.000 13.97 3.67 45.78 2.24
237 239 6.778069 CCTCCTTACAGATGGACATCTAACTA 59.222 42.308 13.97 2.83 45.78 2.24
238 240 7.287927 CCTCCTTACAGATGGACATCTAACTAA 59.712 40.741 13.97 9.29 45.78 2.24
239 241 8.603898 TCCTTACAGATGGACATCTAACTAAA 57.396 34.615 13.97 4.76 45.78 1.85
240 242 9.042450 TCCTTACAGATGGACATCTAACTAAAA 57.958 33.333 13.97 3.34 45.78 1.52
241 243 9.838339 CCTTACAGATGGACATCTAACTAAAAT 57.162 33.333 13.97 0.00 45.78 1.82
245 247 9.911788 ACAGATGGACATCTAACTAAAATCATT 57.088 29.630 13.97 0.00 45.78 2.57
260 262 9.354673 ACTAAAATCATTTGTTCTCCTTTCTCA 57.645 29.630 0.00 0.00 0.00 3.27
264 266 9.889128 AAATCATTTGTTCTCCTTTCTCAAAAA 57.111 25.926 0.00 0.00 32.99 1.94
306 308 2.368548 TGTTGGAGCAACTCTAGCAGAA 59.631 45.455 0.00 0.00 43.85 3.02
333 335 9.108284 TCGTCACATTAACAACATTCATATCAT 57.892 29.630 0.00 0.00 0.00 2.45
417 419 6.795144 AAATATTTGTTGCCTCCATGATCA 57.205 33.333 0.00 0.00 0.00 2.92
418 420 6.401047 AATATTTGTTGCCTCCATGATCAG 57.599 37.500 0.09 0.00 0.00 2.90
496 499 1.749033 CCGGGGCTATCTGAAGTCC 59.251 63.158 0.00 2.97 40.78 3.85
538 541 1.067915 CACATAACCACCAAAAGGCGG 60.068 52.381 0.00 0.00 0.00 6.13
542 545 0.540830 AACCACCAAAAGGCGGCATA 60.541 50.000 13.08 0.00 0.00 3.14
543 546 0.324275 ACCACCAAAAGGCGGCATAT 60.324 50.000 13.08 0.00 0.00 1.78
580 602 6.808008 ATATGGAGGACGCTTGATAAATTG 57.192 37.500 0.00 0.00 0.00 2.32
624 646 5.709966 AGTATCTTTTCGGCCAAAATTGTC 58.290 37.500 2.24 1.81 33.34 3.18
627 649 4.367450 TCTTTTCGGCCAAAATTGTCTTG 58.633 39.130 2.24 0.00 33.34 3.02
690 712 6.861065 CTCTCCTAGAGTCTCTTACATGTC 57.139 45.833 7.89 0.00 37.57 3.06
710 735 1.472480 CGCTTACAAATGGGACCCAAG 59.528 52.381 19.58 13.19 36.95 3.61
711 736 1.824852 GCTTACAAATGGGACCCAAGG 59.175 52.381 19.58 12.45 36.95 3.61
852 1153 5.477510 CAGCAGGGATGAGTAGATAATGAC 58.522 45.833 0.00 0.00 0.00 3.06
1195 1499 0.114168 AGCTCCACTCAGTGAGTCCT 59.886 55.000 23.08 13.35 41.37 3.85
1196 1500 0.530288 GCTCCACTCAGTGAGTCCTC 59.470 60.000 23.08 8.88 41.37 3.71
1197 1501 1.181786 CTCCACTCAGTGAGTCCTCC 58.818 60.000 23.08 0.00 41.37 4.30
1198 1502 0.780637 TCCACTCAGTGAGTCCTCCT 59.219 55.000 23.08 0.00 41.37 3.69
1207 1515 2.111972 AGTGAGTCCTCCTTCCTTACCA 59.888 50.000 0.00 0.00 0.00 3.25
1234 1542 4.945246 TCTTGCGTCTTTTCTTCAGTAGT 58.055 39.130 0.00 0.00 0.00 2.73
1253 1561 0.179097 TTTTTGGCTGTTTGGACGCC 60.179 50.000 0.00 0.00 42.16 5.68
1261 1569 0.953471 TGTTTGGACGCCGGATCTTG 60.953 55.000 5.05 0.00 0.00 3.02
1265 1573 2.100631 GGACGCCGGATCTTGTGTG 61.101 63.158 5.05 0.00 0.00 3.82
1266 1574 2.047274 ACGCCGGATCTTGTGTGG 60.047 61.111 5.05 0.00 0.00 4.17
1271 1579 1.308069 CCGGATCTTGTGTGGCTTGG 61.308 60.000 0.00 0.00 0.00 3.61
1273 1581 1.620822 GGATCTTGTGTGGCTTGGTT 58.379 50.000 0.00 0.00 0.00 3.67
1274 1582 1.963515 GGATCTTGTGTGGCTTGGTTT 59.036 47.619 0.00 0.00 0.00 3.27
1275 1583 2.288395 GGATCTTGTGTGGCTTGGTTTG 60.288 50.000 0.00 0.00 0.00 2.93
1276 1584 1.110442 TCTTGTGTGGCTTGGTTTGG 58.890 50.000 0.00 0.00 0.00 3.28
1281 1589 2.597217 TGGCTTGGTTTGGGCGAG 60.597 61.111 0.00 0.00 0.00 5.03
1295 1603 1.640428 GGCGAGTCGAATGTTGATCA 58.360 50.000 18.61 0.00 0.00 2.92
1341 1649 1.945354 GCCGATCGAGGAGGTGTGAA 61.945 60.000 18.66 0.00 0.00 3.18
1351 1659 3.490348 AGGAGGTGTGAAGTTGAATTGG 58.510 45.455 0.00 0.00 0.00 3.16
1401 1718 6.751514 TGTTGCGTAGAATTTGGTGATAAT 57.248 33.333 0.00 0.00 0.00 1.28
1403 1720 7.690228 TGTTGCGTAGAATTTGGTGATAATAC 58.310 34.615 0.00 0.00 0.00 1.89
1456 1773 8.478877 CCTAACTGAAGATGTTAGATGTAAGGT 58.521 37.037 13.25 0.00 45.65 3.50
1475 1792 2.305009 GTAGTGGTACGCAGGGATAGT 58.695 52.381 0.00 0.00 44.14 2.12
1561 1883 4.331168 GTCAATGAGAATAGCTGGTGTGAC 59.669 45.833 0.00 0.00 0.00 3.67
1579 1901 8.856103 TGGTGTGACGATCTAATTATGAGATAA 58.144 33.333 0.00 0.00 33.71 1.75
1599 1921 9.988815 GAGATAAGAGGTTTTATAGATGCAGAA 57.011 33.333 0.00 0.00 0.00 3.02
1600 1922 9.771534 AGATAAGAGGTTTTATAGATGCAGAAC 57.228 33.333 0.00 0.00 0.00 3.01
1603 1925 7.676683 AGAGGTTTTATAGATGCAGAACCTA 57.323 36.000 5.64 3.17 44.92 3.08
1733 2060 7.722363 TGTTGTTTCTTTTCTTTTAGATCCCC 58.278 34.615 0.00 0.00 0.00 4.81
1736 2063 6.266786 TGTTTCTTTTCTTTTAGATCCCCCAC 59.733 38.462 0.00 0.00 0.00 4.61
1796 2123 1.547372 ACCATTTGCTTCAGATGTGCC 59.453 47.619 0.00 0.00 0.00 5.01
1802 2129 3.632643 TGCTTCAGATGTGCCTATTCA 57.367 42.857 0.00 0.00 0.00 2.57
1860 2187 8.695456 GTTTATCACCATTGTGGGATCTAATTT 58.305 33.333 0.52 0.00 43.37 1.82
2098 2425 3.118038 TCAACTTCAGTAAGGTTGTGGCT 60.118 43.478 0.00 0.00 37.01 4.75
2227 2554 2.642311 TGCCTTTTCTACCATGGACTCA 59.358 45.455 21.47 0.00 0.00 3.41
2230 2557 3.262420 CTTTTCTACCATGGACTCACCG 58.738 50.000 21.47 0.00 42.61 4.94
2270 2597 3.126514 CACTACCAAGCAATGCAGAGAAG 59.873 47.826 8.35 1.66 0.00 2.85
2422 2749 7.344913 AGAGAATATCTTTGGTGAGCTCATTT 58.655 34.615 21.47 3.02 32.99 2.32
2439 2766 5.709164 GCTCATTTATGGCATCTATCCTTGT 59.291 40.000 1.65 0.00 0.00 3.16
2703 3031 1.434696 GAAATCTGGCACCGGCATG 59.565 57.895 0.00 0.00 43.71 4.06
2784 3115 2.224185 ACTCGTGTGGTGCATCTGTAAA 60.224 45.455 0.00 0.00 0.00 2.01
2785 3116 2.805671 CTCGTGTGGTGCATCTGTAAAA 59.194 45.455 0.00 0.00 0.00 1.52
2786 3117 3.206964 TCGTGTGGTGCATCTGTAAAAA 58.793 40.909 0.00 0.00 0.00 1.94
2842 3173 6.490566 CACTTGGTAATTAAGTGTACACCC 57.509 41.667 22.28 14.30 46.13 4.61
2886 3219 4.330944 TTCTGTCACCTCTTTTTCGCTA 57.669 40.909 0.00 0.00 0.00 4.26
2961 3325 7.178274 TGGTCTTAACAAATGCAATCCTAATGT 59.822 33.333 0.00 0.00 0.00 2.71
3003 3367 6.942532 TTTGCAGTATCATCCCATAAGTTC 57.057 37.500 0.00 0.00 0.00 3.01
3177 3543 9.373750 CAGCTGTTATATCATTTAACAATCACG 57.626 33.333 5.25 0.00 38.65 4.35
3179 3545 8.342634 GCTGTTATATCATTTAACAATCACGGT 58.657 33.333 2.77 0.00 38.65 4.83
3237 3603 7.959658 ATTCATCATTAACACTCCATTGGAA 57.040 32.000 6.88 0.00 0.00 3.53
3248 3614 3.446161 ACTCCATTGGAACATTGCATCTG 59.554 43.478 6.88 0.00 39.30 2.90
3286 3652 0.833287 ATACACCTGGCGATCTTGCT 59.167 50.000 0.00 0.00 34.52 3.91
3301 3667 2.170607 TCTTGCTATCAGCCTTGGTACC 59.829 50.000 4.43 4.43 41.51 3.34
3310 3676 0.949105 GCCTTGGTACCAGTGACACG 60.949 60.000 15.65 1.34 0.00 4.49
3340 3706 3.319122 GCAAGGATCCTGTTTCAGTTGTT 59.681 43.478 17.02 0.00 0.00 2.83
3341 3707 4.794003 GCAAGGATCCTGTTTCAGTTGTTG 60.794 45.833 17.02 6.15 0.00 3.33
3342 3708 2.887152 AGGATCCTGTTTCAGTTGTTGC 59.113 45.455 15.29 0.00 0.00 4.17
3343 3709 2.622942 GGATCCTGTTTCAGTTGTTGCA 59.377 45.455 3.84 0.00 0.00 4.08
3347 3716 5.083533 TCCTGTTTCAGTTGTTGCATTTT 57.916 34.783 0.00 0.00 0.00 1.82
3348 3717 5.108517 TCCTGTTTCAGTTGTTGCATTTTC 58.891 37.500 0.00 0.00 0.00 2.29
3364 3733 4.084693 GCATTTTCTTTTCAAGCTGCTGTC 60.085 41.667 1.35 0.00 0.00 3.51
3366 3735 3.976793 TTCTTTTCAAGCTGCTGTCAG 57.023 42.857 1.35 0.00 43.16 3.51
3459 3828 0.631753 TTCCCAACCCTGTTGAACCA 59.368 50.000 8.47 0.00 0.00 3.67
3556 3925 4.388485 TCTGTATTGCGATGTATGGCATT 58.612 39.130 4.78 2.58 41.12 3.56
3569 3938 7.307396 CGATGTATGGCATTAGGAAACTACAAG 60.307 40.741 4.78 0.00 44.30 3.16
3576 3945 5.006746 GCATTAGGAAACTACAAGTGGATCG 59.993 44.000 0.00 0.00 44.30 3.69
3606 3975 4.452114 CCATGGAGCCTTGCTTTTAAAAAC 59.548 41.667 5.56 0.00 39.88 2.43
3608 3977 6.454795 CATGGAGCCTTGCTTTTAAAAACTA 58.545 36.000 1.66 0.00 39.88 2.24
3678 4057 3.883489 TGCAGATACTCACTATGTACGCT 59.117 43.478 0.00 0.00 0.00 5.07
3730 4109 5.975988 ACAAGTATGTGGGGAATATCTGT 57.024 39.130 0.00 0.00 38.69 3.41
3743 4122 5.707298 GGGAATATCTGTATGTTCATGTGGG 59.293 44.000 0.00 0.00 35.52 4.61
3747 4126 9.071276 GAATATCTGTATGTTCATGTGGGATTT 57.929 33.333 0.00 0.00 34.36 2.17
3754 4133 8.811017 TGTATGTTCATGTGGGATTTACAAAAT 58.189 29.630 0.00 0.00 0.00 1.82
3755 4134 9.651913 GTATGTTCATGTGGGATTTACAAAATT 57.348 29.630 0.00 0.00 0.00 1.82
3758 4137 9.050601 TGTTCATGTGGGATTTACAAAATTTTC 57.949 29.630 0.00 0.00 0.00 2.29
3761 4140 8.646004 TCATGTGGGATTTACAAAATTTTCTGA 58.354 29.630 0.00 0.00 0.00 3.27
3805 4186 2.295909 TGTTTGAAAATTCTGGGCTCCG 59.704 45.455 0.00 0.00 0.00 4.63
3807 4188 1.533625 TGAAAATTCTGGGCTCCGTG 58.466 50.000 0.00 0.00 0.00 4.94
3838 4252 5.746990 ATTACTTTGCTGACACTACTCCT 57.253 39.130 0.00 0.00 0.00 3.69
3880 4294 3.366273 GGAATCAGTGCGCAGAAAAATCA 60.366 43.478 12.22 0.00 0.00 2.57
3887 4301 3.066621 GTGCGCAGAAAAATCATGGGATA 59.933 43.478 12.22 0.00 32.09 2.59
3937 4351 4.473559 CCCCCTCTGAATGGTAAGTTCTTA 59.526 45.833 0.00 0.00 0.00 2.10
3938 4352 5.396884 CCCCCTCTGAATGGTAAGTTCTTAG 60.397 48.000 0.00 0.00 0.00 2.18
3940 4354 6.100424 CCCCTCTGAATGGTAAGTTCTTAGAT 59.900 42.308 0.00 0.00 0.00 1.98
3964 4378 6.451064 AAGTTGTCTTGGTCTTTTAGGTTG 57.549 37.500 0.00 0.00 32.09 3.77
3968 4382 4.892934 TGTCTTGGTCTTTTAGGTTGCAAT 59.107 37.500 0.59 0.00 0.00 3.56
3971 4385 7.885922 TGTCTTGGTCTTTTAGGTTGCAATATA 59.114 33.333 0.59 0.00 0.00 0.86
4008 4422 7.355778 GCTTTCAGCACATATGGATTAGTAAC 58.644 38.462 7.80 0.00 41.89 2.50
4029 4443 9.095065 AGTAACATTTGAATGGATTACTACGTC 57.905 33.333 13.63 0.00 36.88 4.34
4030 4444 9.095065 GTAACATTTGAATGGATTACTACGTCT 57.905 33.333 8.44 0.00 40.70 4.18
4031 4445 7.772332 ACATTTGAATGGATTACTACGTCTC 57.228 36.000 8.44 0.00 40.70 3.36
4032 4446 7.327975 ACATTTGAATGGATTACTACGTCTCA 58.672 34.615 8.44 0.00 40.70 3.27
4034 4448 7.591006 TTTGAATGGATTACTACGTCTCAAC 57.409 36.000 0.00 0.00 0.00 3.18
4035 4449 6.525578 TGAATGGATTACTACGTCTCAACT 57.474 37.500 0.00 0.00 0.00 3.16
4036 4450 7.634671 TGAATGGATTACTACGTCTCAACTA 57.365 36.000 0.00 0.00 0.00 2.24
4037 4451 8.234136 TGAATGGATTACTACGTCTCAACTAT 57.766 34.615 0.00 0.00 0.00 2.12
4038 4452 9.346005 TGAATGGATTACTACGTCTCAACTATA 57.654 33.333 0.00 0.00 0.00 1.31
4067 4484 4.016444 CCAGGCCTGCTAATTTTCTGTAA 58.984 43.478 28.39 0.00 0.00 2.41
4071 4488 7.099120 CAGGCCTGCTAATTTTCTGTAATTTT 58.901 34.615 22.33 0.00 0.00 1.82
4072 4489 7.063780 CAGGCCTGCTAATTTTCTGTAATTTTG 59.936 37.037 22.33 0.00 0.00 2.44
4099 4516 3.989817 GGGTTAAAAACTTGCTCATGCTG 59.010 43.478 0.00 0.00 40.48 4.41
4133 4565 5.852827 TGACAGTGATTGAAGTGTGACATA 58.147 37.500 0.00 0.00 33.82 2.29
4262 4696 6.966534 AACTTTGTCCATTTCTCTTGTGAT 57.033 33.333 0.00 0.00 0.00 3.06
4292 4733 4.381566 CCTTAAACAAATTCGCTTGTTCGG 59.618 41.667 9.55 7.72 46.32 4.30
4293 4734 3.430333 AAACAAATTCGCTTGTTCGGT 57.570 38.095 9.55 0.00 46.32 4.69
4331 4772 5.520288 ACCGATACATTGTCGAGAATTTCAG 59.480 40.000 4.83 0.00 41.40 3.02
4360 4801 4.161942 CCTCATCTGACAATCTGAAGGAGT 59.838 45.833 12.46 0.00 32.85 3.85
4361 4802 5.082251 TCATCTGACAATCTGAAGGAGTG 57.918 43.478 0.00 0.00 44.52 3.51
4384 4825 3.760151 TGAGGTGCAAGAATTTGATCCAG 59.240 43.478 0.00 0.00 36.36 3.86
4392 4833 6.434965 TGCAAGAATTTGATCCAGAATCTGAA 59.565 34.615 12.53 0.00 36.36 3.02
4455 4904 4.685169 AGTGGCAAATAAATGAGTCACG 57.315 40.909 0.00 0.00 0.00 4.35
4478 4930 2.167693 TCACGATTCCTTGCGATAGGTT 59.832 45.455 0.00 0.00 36.63 3.50
4517 4969 2.167281 CCAGATGTTGTCGATGAGAGGT 59.833 50.000 0.00 0.00 0.00 3.85
4571 5023 2.607892 GCGGATCATAGCAACCGGC 61.608 63.158 0.00 0.00 44.61 6.13
4611 5063 1.926561 CATCCTCAAGTTGATCGCGA 58.073 50.000 13.09 13.09 0.00 5.87
4657 5109 2.233922 CAGTTGAGAGACCCGGTATGTT 59.766 50.000 0.00 0.00 0.00 2.71
4668 5120 2.629051 CCGGTATGTTGAAACTCTCCC 58.371 52.381 0.00 0.00 0.00 4.30
4675 5127 3.202906 TGTTGAAACTCTCCCTTGTTCG 58.797 45.455 0.00 0.00 0.00 3.95
4698 5150 4.677584 TGCGTAAAATTTGCACAAACTCT 58.322 34.783 0.00 0.00 32.86 3.24
4699 5151 5.105752 TGCGTAAAATTTGCACAAACTCTT 58.894 33.333 0.00 0.00 32.86 2.85
4700 5152 6.266323 TGCGTAAAATTTGCACAAACTCTTA 58.734 32.000 0.00 0.00 32.86 2.10
4719 5171 6.040616 ACTCTTATAACTCTATCCACCAACGG 59.959 42.308 0.00 0.00 0.00 4.44
4744 5198 1.680338 AAAAAGCGGCAGAACAGAGT 58.320 45.000 1.45 0.00 0.00 3.24
4747 5201 2.770164 AAGCGGCAGAACAGAGTAAT 57.230 45.000 1.45 0.00 0.00 1.89
4767 5221 7.796054 AGTAATACTGATAGTGCTTGTGGAAT 58.204 34.615 0.00 0.00 0.00 3.01
4891 5345 0.968393 ACCTGGAGAAGACCTCGCTC 60.968 60.000 0.00 0.00 42.89 5.03
4954 5408 2.093921 GGAGCTCCTGAAGAAGTACACC 60.094 54.545 26.25 0.00 0.00 4.16
5021 5475 0.728466 GATCGGGCGTGCGTAGATAC 60.728 60.000 0.00 0.00 0.00 2.24
5195 5649 7.936950 TTTGTGATGCATTCGTTATGAAAAA 57.063 28.000 0.00 0.00 40.71 1.94
5241 5695 6.337356 TGAATTGTTCCTGGTTTTCTTTGAC 58.663 36.000 0.00 0.00 0.00 3.18
5328 5787 3.171987 GCAGACATGGTGTGCTCG 58.828 61.111 10.78 0.00 46.95 5.03
5331 5790 0.738762 CAGACATGGTGTGCTCGGAG 60.739 60.000 0.00 0.00 0.00 4.63
5355 5814 0.457851 CCGCTTCTTCGGTCTGAGAT 59.542 55.000 0.00 0.00 44.18 2.75
5356 5815 1.554392 CGCTTCTTCGGTCTGAGATG 58.446 55.000 0.00 0.00 0.00 2.90
5357 5816 1.133216 CGCTTCTTCGGTCTGAGATGA 59.867 52.381 0.00 0.00 0.00 2.92
5358 5817 2.223688 CGCTTCTTCGGTCTGAGATGAT 60.224 50.000 0.00 0.00 0.00 2.45
5359 5818 3.122297 GCTTCTTCGGTCTGAGATGATG 58.878 50.000 0.00 0.00 0.00 3.07
5360 5819 3.715495 CTTCTTCGGTCTGAGATGATGG 58.285 50.000 0.00 0.00 0.00 3.51
5361 5820 2.034878 TCTTCGGTCTGAGATGATGGG 58.965 52.381 0.00 0.00 0.00 4.00
5362 5821 1.069823 CTTCGGTCTGAGATGATGGGG 59.930 57.143 0.00 0.00 0.00 4.96
5363 5822 0.760567 TCGGTCTGAGATGATGGGGG 60.761 60.000 0.00 0.00 0.00 5.40
5364 5823 0.760567 CGGTCTGAGATGATGGGGGA 60.761 60.000 0.00 0.00 0.00 4.81
5365 5824 1.055040 GGTCTGAGATGATGGGGGAG 58.945 60.000 0.00 0.00 0.00 4.30
5366 5825 1.413662 GGTCTGAGATGATGGGGGAGA 60.414 57.143 0.00 0.00 0.00 3.71
5367 5826 2.618794 GTCTGAGATGATGGGGGAGAT 58.381 52.381 0.00 0.00 0.00 2.75
5368 5827 2.302445 GTCTGAGATGATGGGGGAGATG 59.698 54.545 0.00 0.00 0.00 2.90
5369 5828 2.090324 TCTGAGATGATGGGGGAGATGT 60.090 50.000 0.00 0.00 0.00 3.06
5370 5829 2.709934 CTGAGATGATGGGGGAGATGTT 59.290 50.000 0.00 0.00 0.00 2.71
5371 5830 2.440627 TGAGATGATGGGGGAGATGTTG 59.559 50.000 0.00 0.00 0.00 3.33
5372 5831 1.779092 AGATGATGGGGGAGATGTTGG 59.221 52.381 0.00 0.00 0.00 3.77
5373 5832 1.776667 GATGATGGGGGAGATGTTGGA 59.223 52.381 0.00 0.00 0.00 3.53
5374 5833 0.918983 TGATGGGGGAGATGTTGGAC 59.081 55.000 0.00 0.00 0.00 4.02
5375 5834 0.179045 GATGGGGGAGATGTTGGACG 60.179 60.000 0.00 0.00 0.00 4.79
5376 5835 2.124695 GGGGGAGATGTTGGACGC 60.125 66.667 0.00 0.00 0.00 5.19
5377 5836 2.511600 GGGGAGATGTTGGACGCG 60.512 66.667 3.53 3.53 0.00 6.01
5378 5837 3.195698 GGGAGATGTTGGACGCGC 61.196 66.667 5.73 0.00 0.00 6.86
5379 5838 2.125512 GGAGATGTTGGACGCGCT 60.126 61.111 5.73 0.00 0.00 5.92
5380 5839 1.141019 GGAGATGTTGGACGCGCTA 59.859 57.895 5.73 0.00 0.00 4.26
5381 5840 1.146358 GGAGATGTTGGACGCGCTAC 61.146 60.000 5.73 0.00 0.00 3.58
5382 5841 0.457853 GAGATGTTGGACGCGCTACA 60.458 55.000 5.73 4.56 0.00 2.74
5383 5842 0.175760 AGATGTTGGACGCGCTACAT 59.824 50.000 5.73 9.85 34.14 2.29
5384 5843 0.301687 GATGTTGGACGCGCTACATG 59.698 55.000 15.68 0.00 31.76 3.21
5385 5844 1.089481 ATGTTGGACGCGCTACATGG 61.089 55.000 5.73 0.00 30.51 3.66
5386 5845 2.817834 TTGGACGCGCTACATGGC 60.818 61.111 5.73 0.00 0.00 4.40
5387 5846 3.597675 TTGGACGCGCTACATGGCA 62.598 57.895 5.73 0.00 0.00 4.92
5388 5847 3.564027 GGACGCGCTACATGGCAC 61.564 66.667 5.73 0.00 0.00 5.01
5389 5848 2.509336 GACGCGCTACATGGCACT 60.509 61.111 5.73 0.00 0.00 4.40
5390 5849 2.802667 GACGCGCTACATGGCACTG 61.803 63.158 5.73 0.00 0.00 3.66
5391 5850 4.228097 CGCGCTACATGGCACTGC 62.228 66.667 5.56 0.00 0.00 4.40
5392 5851 2.821366 GCGCTACATGGCACTGCT 60.821 61.111 0.00 0.00 0.00 4.24
5393 5852 2.817423 GCGCTACATGGCACTGCTC 61.817 63.158 0.00 0.00 0.00 4.26
5394 5853 2.520039 CGCTACATGGCACTGCTCG 61.520 63.158 0.00 0.00 0.00 5.03
5395 5854 2.176273 GCTACATGGCACTGCTCGG 61.176 63.158 0.00 0.00 0.00 4.63
5396 5855 2.125147 TACATGGCACTGCTCGGC 60.125 61.111 0.00 0.00 0.00 5.54
5408 5867 3.191539 CTCGGCGCCTTGCTTCTC 61.192 66.667 26.68 0.00 45.43 2.87
5409 5868 4.760047 TCGGCGCCTTGCTTCTCC 62.760 66.667 26.68 0.00 45.43 3.71
5411 5870 3.130160 GGCGCCTTGCTTCTCCAG 61.130 66.667 22.15 0.00 45.43 3.86
5422 5881 2.847327 CTTCTCCAGCACCTTCTTGA 57.153 50.000 0.00 0.00 0.00 3.02
5423 5882 3.347077 CTTCTCCAGCACCTTCTTGAT 57.653 47.619 0.00 0.00 0.00 2.57
5424 5883 2.775911 TCTCCAGCACCTTCTTGATG 57.224 50.000 0.00 0.00 32.47 3.07
5425 5884 1.980765 TCTCCAGCACCTTCTTGATGT 59.019 47.619 0.00 0.00 30.60 3.06
5426 5885 2.373169 TCTCCAGCACCTTCTTGATGTT 59.627 45.455 0.00 0.00 30.60 2.71
5427 5886 3.582647 TCTCCAGCACCTTCTTGATGTTA 59.417 43.478 0.00 0.00 30.60 2.41
5428 5887 4.225942 TCTCCAGCACCTTCTTGATGTTAT 59.774 41.667 0.00 0.00 30.60 1.89
5429 5888 4.264253 TCCAGCACCTTCTTGATGTTATG 58.736 43.478 0.00 0.00 30.60 1.90
5430 5889 3.379372 CCAGCACCTTCTTGATGTTATGG 59.621 47.826 0.00 0.00 30.60 2.74
5431 5890 4.264253 CAGCACCTTCTTGATGTTATGGA 58.736 43.478 0.00 0.00 0.00 3.41
5432 5891 4.095483 CAGCACCTTCTTGATGTTATGGAC 59.905 45.833 0.00 0.00 0.00 4.02
5433 5892 4.018960 AGCACCTTCTTGATGTTATGGACT 60.019 41.667 0.00 0.00 0.00 3.85
5434 5893 4.702131 GCACCTTCTTGATGTTATGGACTT 59.298 41.667 0.00 0.00 0.00 3.01
5435 5894 5.183904 GCACCTTCTTGATGTTATGGACTTT 59.816 40.000 0.00 0.00 0.00 2.66
5436 5895 6.615088 CACCTTCTTGATGTTATGGACTTTG 58.385 40.000 0.00 0.00 0.00 2.77
5437 5896 6.207417 CACCTTCTTGATGTTATGGACTTTGT 59.793 38.462 0.00 0.00 0.00 2.83
5438 5897 7.390440 CACCTTCTTGATGTTATGGACTTTGTA 59.610 37.037 0.00 0.00 0.00 2.41
5439 5898 7.942341 ACCTTCTTGATGTTATGGACTTTGTAA 59.058 33.333 0.00 0.00 0.00 2.41
5440 5899 8.960591 CCTTCTTGATGTTATGGACTTTGTAAT 58.039 33.333 0.00 0.00 0.00 1.89
5444 5903 9.573133 CTTGATGTTATGGACTTTGTAATTTCC 57.427 33.333 0.00 0.00 0.00 3.13
5445 5904 7.757526 TGATGTTATGGACTTTGTAATTTCCG 58.242 34.615 0.00 0.00 0.00 4.30
5446 5905 5.945155 TGTTATGGACTTTGTAATTTCCGC 58.055 37.500 0.00 0.00 0.00 5.54
5447 5906 5.473846 TGTTATGGACTTTGTAATTTCCGCA 59.526 36.000 0.00 0.00 0.00 5.69
5448 5907 3.907894 TGGACTTTGTAATTTCCGCAC 57.092 42.857 0.00 0.00 0.00 5.34
5449 5908 2.554893 TGGACTTTGTAATTTCCGCACC 59.445 45.455 0.00 0.00 0.00 5.01
5450 5909 2.817844 GGACTTTGTAATTTCCGCACCT 59.182 45.455 0.00 0.00 0.00 4.00
5451 5910 3.254903 GGACTTTGTAATTTCCGCACCTT 59.745 43.478 0.00 0.00 0.00 3.50
5452 5911 4.226761 GACTTTGTAATTTCCGCACCTTG 58.773 43.478 0.00 0.00 0.00 3.61
5453 5912 3.634910 ACTTTGTAATTTCCGCACCTTGT 59.365 39.130 0.00 0.00 0.00 3.16
5454 5913 4.098807 ACTTTGTAATTTCCGCACCTTGTT 59.901 37.500 0.00 0.00 0.00 2.83
5455 5914 5.299782 ACTTTGTAATTTCCGCACCTTGTTA 59.700 36.000 0.00 0.00 0.00 2.41
5456 5915 4.752661 TGTAATTTCCGCACCTTGTTAC 57.247 40.909 0.00 0.00 0.00 2.50
5457 5916 4.391155 TGTAATTTCCGCACCTTGTTACT 58.609 39.130 0.00 0.00 0.00 2.24
5458 5917 4.453136 TGTAATTTCCGCACCTTGTTACTC 59.547 41.667 0.00 0.00 0.00 2.59
5459 5918 1.504359 TTTCCGCACCTTGTTACTCG 58.496 50.000 0.00 0.00 0.00 4.18
5460 5919 0.390124 TTCCGCACCTTGTTACTCGT 59.610 50.000 0.00 0.00 0.00 4.18
5461 5920 0.390124 TCCGCACCTTGTTACTCGTT 59.610 50.000 0.00 0.00 0.00 3.85
5462 5921 0.511221 CCGCACCTTGTTACTCGTTG 59.489 55.000 0.00 0.00 0.00 4.10
5463 5922 1.214367 CGCACCTTGTTACTCGTTGT 58.786 50.000 0.00 0.00 0.00 3.32
5464 5923 2.396601 CGCACCTTGTTACTCGTTGTA 58.603 47.619 0.00 0.00 0.00 2.41
5465 5924 2.154389 CGCACCTTGTTACTCGTTGTAC 59.846 50.000 0.00 0.00 0.00 2.90
5466 5925 2.154389 GCACCTTGTTACTCGTTGTACG 59.846 50.000 0.00 0.00 44.19 3.67
5467 5926 2.727798 CACCTTGTTACTCGTTGTACGG 59.272 50.000 0.00 0.00 42.81 4.02
5468 5927 2.622942 ACCTTGTTACTCGTTGTACGGA 59.377 45.455 0.00 0.00 42.81 4.69
5469 5928 3.256631 ACCTTGTTACTCGTTGTACGGAT 59.743 43.478 0.00 0.00 42.81 4.18
5470 5929 4.240096 CCTTGTTACTCGTTGTACGGATT 58.760 43.478 0.00 0.00 42.81 3.01
5471 5930 5.048083 ACCTTGTTACTCGTTGTACGGATTA 60.048 40.000 0.00 0.00 42.81 1.75
5472 5931 5.514204 CCTTGTTACTCGTTGTACGGATTAG 59.486 44.000 0.00 0.00 42.81 1.73
5473 5932 5.627499 TGTTACTCGTTGTACGGATTAGT 57.373 39.130 0.00 0.00 42.81 2.24
5474 5933 6.012658 TGTTACTCGTTGTACGGATTAGTT 57.987 37.500 0.00 0.00 42.81 2.24
5475 5934 5.858049 TGTTACTCGTTGTACGGATTAGTTG 59.142 40.000 0.00 0.00 42.81 3.16
5476 5935 3.841643 ACTCGTTGTACGGATTAGTTGG 58.158 45.455 0.00 0.00 42.81 3.77
5477 5936 3.256631 ACTCGTTGTACGGATTAGTTGGT 59.743 43.478 0.00 0.00 42.81 3.67
5478 5937 4.240096 CTCGTTGTACGGATTAGTTGGTT 58.760 43.478 0.00 0.00 42.81 3.67
5479 5938 3.989167 TCGTTGTACGGATTAGTTGGTTG 59.011 43.478 0.00 0.00 42.81 3.77
5480 5939 3.423907 CGTTGTACGGATTAGTTGGTTGC 60.424 47.826 0.00 0.00 38.08 4.17
5481 5940 3.688694 TGTACGGATTAGTTGGTTGCT 57.311 42.857 0.00 0.00 0.00 3.91
5482 5941 4.010667 TGTACGGATTAGTTGGTTGCTT 57.989 40.909 0.00 0.00 0.00 3.91
5483 5942 4.391155 TGTACGGATTAGTTGGTTGCTTT 58.609 39.130 0.00 0.00 0.00 3.51
5484 5943 4.822896 TGTACGGATTAGTTGGTTGCTTTT 59.177 37.500 0.00 0.00 0.00 2.27
5485 5944 4.929819 ACGGATTAGTTGGTTGCTTTTT 57.070 36.364 0.00 0.00 0.00 1.94
5522 5981 5.254339 GGTGAAAGCCTATTTCAAGATGG 57.746 43.478 4.71 0.00 39.76 3.51
5523 5982 4.440663 GGTGAAAGCCTATTTCAAGATGGC 60.441 45.833 4.71 0.00 39.76 4.40
5524 5983 3.701040 TGAAAGCCTATTTCAAGATGGCC 59.299 43.478 0.00 0.00 44.19 5.36
5525 5984 3.386932 AAGCCTATTTCAAGATGGCCA 57.613 42.857 8.56 8.56 44.19 5.36
5526 5985 2.659428 AGCCTATTTCAAGATGGCCAC 58.341 47.619 8.16 1.58 44.19 5.01
5527 5986 1.334869 GCCTATTTCAAGATGGCCACG 59.665 52.381 8.16 0.00 37.81 4.94
5528 5987 2.917933 CCTATTTCAAGATGGCCACGA 58.082 47.619 8.16 0.00 0.00 4.35
5529 5988 2.874701 CCTATTTCAAGATGGCCACGAG 59.125 50.000 8.16 0.00 0.00 4.18
5530 5989 1.755179 ATTTCAAGATGGCCACGAGG 58.245 50.000 8.16 0.00 38.23 4.63
5531 5990 0.400213 TTTCAAGATGGCCACGAGGT 59.600 50.000 8.16 0.00 37.19 3.85
5532 5991 0.400213 TTCAAGATGGCCACGAGGTT 59.600 50.000 8.16 0.00 37.19 3.50
5533 5992 0.400213 TCAAGATGGCCACGAGGTTT 59.600 50.000 8.16 0.00 37.19 3.27
5534 5993 1.626321 TCAAGATGGCCACGAGGTTTA 59.374 47.619 8.16 0.00 37.19 2.01
5535 5994 2.039216 TCAAGATGGCCACGAGGTTTAA 59.961 45.455 8.16 0.00 37.19 1.52
5536 5995 2.403252 AGATGGCCACGAGGTTTAAG 57.597 50.000 8.16 0.00 37.19 1.85
5537 5996 1.065418 AGATGGCCACGAGGTTTAAGG 60.065 52.381 8.16 0.00 37.19 2.69
5538 5997 0.679960 ATGGCCACGAGGTTTAAGGC 60.680 55.000 8.16 0.00 44.48 4.35
5539 5998 1.302993 GGCCACGAGGTTTAAGGCA 60.303 57.895 0.00 0.00 46.96 4.75
5540 5999 0.679960 GGCCACGAGGTTTAAGGCAT 60.680 55.000 0.00 0.00 46.96 4.40
5541 6000 0.733150 GCCACGAGGTTTAAGGCATC 59.267 55.000 0.00 0.00 44.59 3.91
5542 6001 1.679032 GCCACGAGGTTTAAGGCATCT 60.679 52.381 0.00 0.00 44.59 2.90
5543 6002 2.280628 CCACGAGGTTTAAGGCATCTC 58.719 52.381 0.00 0.00 0.00 2.75
5544 6003 2.280628 CACGAGGTTTAAGGCATCTCC 58.719 52.381 0.00 0.00 0.00 3.71
5545 6004 1.906574 ACGAGGTTTAAGGCATCTCCA 59.093 47.619 0.00 0.00 37.29 3.86
5546 6005 2.304761 ACGAGGTTTAAGGCATCTCCAA 59.695 45.455 0.00 0.00 37.29 3.53
5547 6006 3.244770 ACGAGGTTTAAGGCATCTCCAAA 60.245 43.478 0.00 0.00 37.29 3.28
5548 6007 3.756434 CGAGGTTTAAGGCATCTCCAAAA 59.244 43.478 0.00 0.00 37.29 2.44
5549 6008 4.379499 CGAGGTTTAAGGCATCTCCAAAAC 60.379 45.833 0.00 0.00 39.92 2.43
5550 6009 3.506067 AGGTTTAAGGCATCTCCAAAACG 59.494 43.478 0.00 0.00 40.78 3.60
5551 6010 3.366985 GGTTTAAGGCATCTCCAAAACGG 60.367 47.826 0.00 0.00 40.78 4.44
5552 6011 2.871096 TAAGGCATCTCCAAAACGGT 57.129 45.000 0.00 0.00 37.29 4.83
5553 6012 1.534729 AAGGCATCTCCAAAACGGTC 58.465 50.000 0.00 0.00 37.29 4.79
5554 6013 0.322546 AGGCATCTCCAAAACGGTCC 60.323 55.000 0.00 0.00 37.29 4.46
5555 6014 1.313091 GGCATCTCCAAAACGGTCCC 61.313 60.000 0.00 0.00 35.57 4.46
5556 6015 0.322546 GCATCTCCAAAACGGTCCCT 60.323 55.000 0.00 0.00 35.57 4.20
5557 6016 1.739067 CATCTCCAAAACGGTCCCTC 58.261 55.000 0.00 0.00 35.57 4.30
5558 6017 1.003118 CATCTCCAAAACGGTCCCTCA 59.997 52.381 0.00 0.00 35.57 3.86
5559 6018 1.133363 TCTCCAAAACGGTCCCTCAA 58.867 50.000 0.00 0.00 35.57 3.02
5560 6019 1.202722 TCTCCAAAACGGTCCCTCAAC 60.203 52.381 0.00 0.00 35.57 3.18
5561 6020 0.841289 TCCAAAACGGTCCCTCAACT 59.159 50.000 0.00 0.00 35.57 3.16
5562 6021 0.951558 CCAAAACGGTCCCTCAACTG 59.048 55.000 0.00 0.00 0.00 3.16
5563 6022 1.675552 CAAAACGGTCCCTCAACTGT 58.324 50.000 0.00 0.00 40.49 3.55
5564 6023 1.602377 CAAAACGGTCCCTCAACTGTC 59.398 52.381 0.00 0.00 37.78 3.51
5565 6024 1.129058 AAACGGTCCCTCAACTGTCT 58.871 50.000 0.00 0.00 37.78 3.41
5566 6025 2.005370 AACGGTCCCTCAACTGTCTA 57.995 50.000 0.00 0.00 37.78 2.59
5567 6026 1.254954 ACGGTCCCTCAACTGTCTAC 58.745 55.000 0.00 0.00 33.41 2.59
5568 6027 1.254026 CGGTCCCTCAACTGTCTACA 58.746 55.000 0.00 0.00 0.00 2.74
5569 6028 1.616865 CGGTCCCTCAACTGTCTACAA 59.383 52.381 0.00 0.00 0.00 2.41
5570 6029 2.609737 CGGTCCCTCAACTGTCTACAAC 60.610 54.545 0.00 0.00 0.00 3.32
5571 6030 2.289506 GGTCCCTCAACTGTCTACAACC 60.290 54.545 0.00 0.00 0.00 3.77
5572 6031 2.367567 GTCCCTCAACTGTCTACAACCA 59.632 50.000 0.00 0.00 0.00 3.67
5573 6032 3.008049 GTCCCTCAACTGTCTACAACCAT 59.992 47.826 0.00 0.00 0.00 3.55
5574 6033 3.260884 TCCCTCAACTGTCTACAACCATC 59.739 47.826 0.00 0.00 0.00 3.51
5575 6034 3.600388 CCTCAACTGTCTACAACCATCC 58.400 50.000 0.00 0.00 0.00 3.51
5576 6035 3.254060 CTCAACTGTCTACAACCATCCG 58.746 50.000 0.00 0.00 0.00 4.18
5577 6036 2.028476 TCAACTGTCTACAACCATCCGG 60.028 50.000 0.00 0.00 38.77 5.14
5578 6037 1.933021 ACTGTCTACAACCATCCGGA 58.067 50.000 6.61 6.61 35.59 5.14
5579 6038 1.549170 ACTGTCTACAACCATCCGGAC 59.451 52.381 6.12 0.00 35.59 4.79
5580 6039 1.825474 CTGTCTACAACCATCCGGACT 59.175 52.381 6.12 0.00 35.59 3.85
5581 6040 1.548719 TGTCTACAACCATCCGGACTG 59.451 52.381 6.12 6.60 35.59 3.51
5582 6041 0.535335 TCTACAACCATCCGGACTGC 59.465 55.000 6.12 0.00 35.59 4.40
5583 6042 0.806102 CTACAACCATCCGGACTGCG 60.806 60.000 6.12 0.00 35.59 5.18
5584 6043 1.537814 TACAACCATCCGGACTGCGT 61.538 55.000 6.12 3.17 35.59 5.24
5585 6044 2.047274 AACCATCCGGACTGCGTG 60.047 61.111 6.12 0.00 35.59 5.34
5586 6045 3.605749 AACCATCCGGACTGCGTGG 62.606 63.158 17.72 17.72 35.59 4.94
5587 6046 4.082523 CCATCCGGACTGCGTGGT 62.083 66.667 6.12 0.00 0.00 4.16
5588 6047 2.509336 CATCCGGACTGCGTGGTC 60.509 66.667 6.12 2.14 35.66 4.02
5589 6048 4.129737 ATCCGGACTGCGTGGTCG 62.130 66.667 6.12 0.00 37.12 4.79
5594 6053 4.338539 GACTGCGTGGTCGGACGT 62.339 66.667 1.43 0.00 41.54 4.34
5595 6054 2.969806 GACTGCGTGGTCGGACGTA 61.970 63.158 1.43 0.00 41.54 3.57
5596 6055 2.262471 GACTGCGTGGTCGGACGTAT 62.262 60.000 1.43 0.00 41.54 3.06
5597 6056 1.153901 CTGCGTGGTCGGACGTATT 60.154 57.895 1.43 0.00 41.54 1.89
5598 6057 0.734942 CTGCGTGGTCGGACGTATTT 60.735 55.000 1.43 0.00 41.54 1.40
5599 6058 0.319727 TGCGTGGTCGGACGTATTTT 60.320 50.000 1.43 0.00 41.54 1.82
5600 6059 0.094046 GCGTGGTCGGACGTATTTTG 59.906 55.000 1.43 0.00 41.54 2.44
5601 6060 1.421382 CGTGGTCGGACGTATTTTGT 58.579 50.000 1.43 0.00 34.56 2.83
5602 6061 1.387756 CGTGGTCGGACGTATTTTGTC 59.612 52.381 1.43 0.00 34.56 3.18
5603 6062 2.406130 GTGGTCGGACGTATTTTGTCA 58.594 47.619 1.43 0.00 38.10 3.58
5604 6063 2.156310 GTGGTCGGACGTATTTTGTCAC 59.844 50.000 1.43 0.00 38.10 3.67
5605 6064 1.728425 GGTCGGACGTATTTTGTCACC 59.272 52.381 1.43 0.00 38.10 4.02
5606 6065 1.728425 GTCGGACGTATTTTGTCACCC 59.272 52.381 0.00 0.00 38.10 4.61
5607 6066 1.343789 TCGGACGTATTTTGTCACCCA 59.656 47.619 0.00 0.00 38.10 4.51
5608 6067 2.144730 CGGACGTATTTTGTCACCCAA 58.855 47.619 0.00 0.00 38.10 4.12
5609 6068 2.096119 CGGACGTATTTTGTCACCCAAC 60.096 50.000 0.00 0.00 38.10 3.77
5610 6069 2.096119 GGACGTATTTTGTCACCCAACG 60.096 50.000 0.00 0.00 38.10 4.10
5611 6070 2.801679 GACGTATTTTGTCACCCAACGA 59.198 45.455 0.00 0.00 36.37 3.85
5612 6071 3.404899 ACGTATTTTGTCACCCAACGAT 58.595 40.909 0.00 0.00 31.20 3.73
5613 6072 3.187637 ACGTATTTTGTCACCCAACGATG 59.812 43.478 0.00 0.00 31.20 3.84
5614 6073 3.187637 CGTATTTTGTCACCCAACGATGT 59.812 43.478 0.00 0.00 31.20 3.06
5615 6074 4.389382 CGTATTTTGTCACCCAACGATGTA 59.611 41.667 0.00 0.00 31.20 2.29
5616 6075 4.759516 ATTTTGTCACCCAACGATGTAC 57.240 40.909 0.00 0.00 31.20 2.90
5626 6085 2.581409 CGATGTACGTCCACGGGC 60.581 66.667 9.51 0.00 44.95 6.13
5639 6098 3.885521 CGGGCCGGTCTAGACGTC 61.886 72.222 20.56 7.70 0.00 4.34
5640 6099 2.439883 GGGCCGGTCTAGACGTCT 60.440 66.667 23.66 23.66 0.00 4.18
5661 6120 2.631160 TTTTCTCGCAAACTGGAGGA 57.369 45.000 0.00 0.00 0.00 3.71
5662 6121 2.169832 TTTCTCGCAAACTGGAGGAG 57.830 50.000 0.00 0.00 0.00 3.69
5681 6140 0.822164 GGCTTTGCCGGAGTCTAGTA 59.178 55.000 5.05 0.00 39.62 1.82
5682 6141 1.471153 GGCTTTGCCGGAGTCTAGTAC 60.471 57.143 5.05 0.00 39.62 2.73
5689 6154 1.414181 CCGGAGTCTAGTACCCGTAGA 59.586 57.143 0.00 0.00 39.13 2.59
5701 7935 0.964358 CCCGTAGAACTCCGACACCT 60.964 60.000 0.00 0.00 0.00 4.00
5717 7951 2.203567 CTCCGGCCCACCCAAAAA 60.204 61.111 0.00 0.00 0.00 1.94
5720 7954 3.984749 CGGCCCACCCAAAAACCG 61.985 66.667 0.00 0.00 0.00 4.44
5721 7955 4.308458 GGCCCACCCAAAAACCGC 62.308 66.667 0.00 0.00 0.00 5.68
5746 7984 1.502163 CGCGCCTCCATTCTTCCATC 61.502 60.000 0.00 0.00 0.00 3.51
5759 9765 5.432680 TTCTTCCATCTTTCTCTGCATCT 57.567 39.130 0.00 0.00 0.00 2.90
5760 9766 4.767478 TCTTCCATCTTTCTCTGCATCTG 58.233 43.478 0.00 0.00 0.00 2.90
5769 9776 6.294473 TCTTTCTCTGCATCTGTTTTCTCTT 58.706 36.000 0.00 0.00 0.00 2.85
5841 9853 2.567049 CGACTCCGTCACCTCCAC 59.433 66.667 0.00 0.00 32.09 4.02
5850 9862 1.228769 TCACCTCCACCGCTACACT 60.229 57.895 0.00 0.00 0.00 3.55
5861 9873 0.530744 CGCTACACTTAGGCTCCACA 59.469 55.000 0.00 0.00 0.00 4.17
5874 9886 1.228894 TCCACACCGCTTCTCCTCT 60.229 57.895 0.00 0.00 0.00 3.69
5876 9888 1.739562 CACACCGCTTCTCCTCTGC 60.740 63.158 0.00 0.00 0.00 4.26
5882 9894 4.521062 CTTCTCCTCTGCCGCCGG 62.521 72.222 0.00 0.00 0.00 6.13
5903 9916 4.316823 ACACCTCTCCTCCGCCCA 62.317 66.667 0.00 0.00 0.00 5.36
5920 9934 1.596934 CACCGCACCTGTACCATCT 59.403 57.895 0.00 0.00 0.00 2.90
5933 9947 1.153168 CCATCTGCCCCTACGGTTG 60.153 63.158 0.00 0.00 0.00 3.77
5957 9971 1.070786 ATGCCCGACAAGTGTTCGT 59.929 52.632 0.00 0.00 0.00 3.85
5965 9979 3.288242 CGACAAGTGTTCGTTGAAATGG 58.712 45.455 0.00 0.00 0.00 3.16
6001 10017 5.110814 TGTTGTCCCTTCTTCTTTGAAGA 57.889 39.130 5.97 5.97 44.40 2.87
6003 10019 6.129179 TGTTGTCCCTTCTTCTTTGAAGAAT 58.871 36.000 19.02 0.00 44.40 2.40
6050 10066 2.710760 GAGCTCTATGTTGAGTCGTCG 58.289 52.381 6.43 0.00 36.51 5.12
6077 10093 0.742281 CGTCGGACGAGGAGGACTAA 60.742 60.000 25.29 0.00 46.05 2.24
6081 10097 1.457346 GGACGAGGAGGACTAAACGA 58.543 55.000 0.00 0.00 0.00 3.85
6110 10126 0.319040 CGATGATGTAGGCGGTCCTG 60.319 60.000 1.86 0.00 44.08 3.86
6113 10129 3.792053 GATGTAGGCGGTCCTGGCG 62.792 68.421 0.00 0.00 44.08 5.69
6155 10171 2.159142 GCATGCTCTCAATTTCAAGGGG 60.159 50.000 11.37 0.00 0.00 4.79
6167 10183 1.452108 CAAGGGGTCGATCAAGGGC 60.452 63.158 0.00 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.265073 CACCATAAGCTAAGAAGTTGCCT 58.735 43.478 0.00 0.00 0.00 4.75
3 4 3.691609 AGCACCATAAGCTAAGAAGTTGC 59.308 43.478 0.00 0.00 41.32 4.17
4 5 6.985188 TTAGCACCATAAGCTAAGAAGTTG 57.015 37.500 3.72 0.00 46.40 3.16
34 35 1.529438 CGCGTCTGCCTCTAACAAAAA 59.471 47.619 0.00 0.00 38.08 1.94
35 36 1.144969 CGCGTCTGCCTCTAACAAAA 58.855 50.000 0.00 0.00 38.08 2.44
36 37 1.289109 GCGCGTCTGCCTCTAACAAA 61.289 55.000 8.43 0.00 38.08 2.83
37 38 1.736645 GCGCGTCTGCCTCTAACAA 60.737 57.895 8.43 0.00 38.08 2.83
38 39 2.126071 GCGCGTCTGCCTCTAACA 60.126 61.111 8.43 0.00 38.08 2.41
39 40 2.126071 TGCGCGTCTGCCTCTAAC 60.126 61.111 8.43 0.00 38.08 2.34
40 41 2.126071 GTGCGCGTCTGCCTCTAA 60.126 61.111 8.43 0.00 38.08 2.10
41 42 3.370231 TGTGCGCGTCTGCCTCTA 61.370 61.111 8.43 0.00 38.08 2.43
46 47 0.800683 TATACAGTGTGCGCGTCTGC 60.801 55.000 20.47 7.49 37.91 4.26
47 48 1.191944 CTATACAGTGTGCGCGTCTG 58.808 55.000 19.44 19.44 35.60 3.51
48 49 1.064208 CTCTATACAGTGTGCGCGTCT 59.936 52.381 8.43 0.00 0.00 4.18
49 50 1.467875 CTCTATACAGTGTGCGCGTC 58.532 55.000 8.43 0.00 0.00 5.19
50 51 0.100682 CCTCTATACAGTGTGCGCGT 59.899 55.000 8.43 0.00 0.00 6.01
51 52 1.209275 GCCTCTATACAGTGTGCGCG 61.209 60.000 5.88 0.00 0.00 6.86
52 53 0.179111 TGCCTCTATACAGTGTGCGC 60.179 55.000 5.88 0.00 0.00 6.09
53 54 1.927174 GTTGCCTCTATACAGTGTGCG 59.073 52.381 5.88 0.00 0.00 5.34
54 55 2.093447 AGGTTGCCTCTATACAGTGTGC 60.093 50.000 5.88 0.00 0.00 4.57
55 56 3.786635 GAGGTTGCCTCTATACAGTGTG 58.213 50.000 5.88 0.00 46.41 3.82
67 68 3.527937 TCTAAGGGTTTAGAGGTTGCCT 58.472 45.455 0.00 0.00 40.20 4.75
68 69 3.994931 TCTAAGGGTTTAGAGGTTGCC 57.005 47.619 0.00 0.00 40.20 4.52
75 76 9.543231 TTCTAAGATTGTCTCTAAGGGTTTAGA 57.457 33.333 0.00 0.00 42.25 2.10
76 77 9.810545 CTTCTAAGATTGTCTCTAAGGGTTTAG 57.189 37.037 0.00 0.00 38.09 1.85
77 78 8.258708 GCTTCTAAGATTGTCTCTAAGGGTTTA 58.741 37.037 0.00 0.00 32.41 2.01
78 79 7.106890 GCTTCTAAGATTGTCTCTAAGGGTTT 58.893 38.462 0.00 0.00 32.41 3.27
79 80 6.213600 TGCTTCTAAGATTGTCTCTAAGGGTT 59.786 38.462 0.00 0.00 32.41 4.11
80 81 5.721960 TGCTTCTAAGATTGTCTCTAAGGGT 59.278 40.000 0.00 0.00 32.41 4.34
81 82 6.227298 TGCTTCTAAGATTGTCTCTAAGGG 57.773 41.667 0.00 0.00 32.41 3.95
82 83 7.551585 TCTTGCTTCTAAGATTGTCTCTAAGG 58.448 38.462 0.00 0.00 32.02 2.69
83 84 8.994429 TTCTTGCTTCTAAGATTGTCTCTAAG 57.006 34.615 0.00 0.00 36.63 2.18
87 88 8.563732 ACTTTTTCTTGCTTCTAAGATTGTCTC 58.436 33.333 0.00 0.00 36.63 3.36
93 94 8.340618 TGCATACTTTTTCTTGCTTCTAAGAT 57.659 30.769 0.00 0.00 36.63 2.40
101 102 3.004734 ACGCTTGCATACTTTTTCTTGCT 59.995 39.130 0.00 0.00 36.10 3.91
113 114 0.824109 AGAGCACCTACGCTTGCATA 59.176 50.000 0.00 0.00 44.01 3.14
120 121 2.311124 AACCATAAGAGCACCTACGC 57.689 50.000 0.00 0.00 0.00 4.42
121 122 4.201685 CGAAAAACCATAAGAGCACCTACG 60.202 45.833 0.00 0.00 0.00 3.51
144 145 1.441682 GACGGAACCGAGACGACAC 60.442 63.158 20.14 0.00 42.83 3.67
180 181 7.564793 ACTGCCTTAGAAATGTATATGTCACA 58.435 34.615 0.00 0.00 0.00 3.58
181 182 8.438676 AACTGCCTTAGAAATGTATATGTCAC 57.561 34.615 0.00 0.00 0.00 3.67
204 205 2.579410 TCTGTAAGGAGGGGCAAAAC 57.421 50.000 0.00 0.00 0.00 2.43
234 236 9.354673 TGAGAAAGGAGAACAAATGATTTTAGT 57.645 29.630 0.00 0.00 0.00 2.24
237 239 9.889128 TTTTGAGAAAGGAGAACAAATGATTTT 57.111 25.926 0.00 0.00 32.05 1.82
238 240 9.889128 TTTTTGAGAAAGGAGAACAAATGATTT 57.111 25.926 0.00 0.00 32.05 2.17
264 266 9.918630 CCAACAGAAGAGAACAAATGATTTTAT 57.081 29.630 0.00 0.00 0.00 1.40
286 288 2.751166 TCTGCTAGAGTTGCTCCAAC 57.249 50.000 0.00 0.00 43.83 3.77
289 291 2.159170 ACGATTCTGCTAGAGTTGCTCC 60.159 50.000 0.00 0.00 0.00 4.70
306 308 9.108284 TGATATGAATGTTGTTAATGTGACGAT 57.892 29.630 0.00 0.00 0.00 3.73
333 335 9.917129 ATATTCATACGAAACGTGTTCCATATA 57.083 29.630 7.05 0.00 41.39 0.86
384 386 7.962373 GGAGGCAACAAATATTTAATTTTGTGC 59.038 33.333 14.17 16.20 43.33 4.57
417 419 1.762460 ATTGTCGAGCGGATCCCCT 60.762 57.895 6.06 1.22 0.00 4.79
418 420 1.595382 CATTGTCGAGCGGATCCCC 60.595 63.158 6.06 0.00 0.00 4.81
485 488 2.268298 GCGCGAAAAGGACTTCAGATA 58.732 47.619 12.10 0.00 0.00 1.98
487 490 0.949105 GGCGCGAAAAGGACTTCAGA 60.949 55.000 12.10 0.00 0.00 3.27
496 499 0.238289 ATCTTGTGTGGCGCGAAAAG 59.762 50.000 12.10 0.00 0.00 2.27
572 594 9.570488 GGTATAGTAGGATCGTCACAATTTATC 57.430 37.037 0.00 0.00 0.00 1.75
580 602 5.307204 ACTCTGGTATAGTAGGATCGTCAC 58.693 45.833 0.00 0.00 0.00 3.67
621 643 6.476380 CCGTAATAACCGCTATTAACAAGACA 59.524 38.462 0.00 0.00 34.84 3.41
624 646 5.610982 CGCCGTAATAACCGCTATTAACAAG 60.611 44.000 0.00 0.00 34.84 3.16
627 649 3.980775 TCGCCGTAATAACCGCTATTAAC 59.019 43.478 0.00 0.00 34.84 2.01
688 710 1.092348 GGGTCCCATTTGTAAGCGAC 58.908 55.000 1.78 0.00 0.00 5.19
690 712 1.472480 CTTGGGTCCCATTTGTAAGCG 59.528 52.381 12.68 0.00 31.53 4.68
789 1089 3.003230 CCCGAGGGTGGGCATTTA 58.997 61.111 0.00 0.00 43.70 1.40
852 1153 3.315521 CAAGGATCGCTCGCGTCG 61.316 66.667 5.77 11.68 40.74 5.12
1195 1499 4.142038 GCAAGAAAAGTGGTAAGGAAGGA 58.858 43.478 0.00 0.00 0.00 3.36
1196 1500 3.058224 CGCAAGAAAAGTGGTAAGGAAGG 60.058 47.826 0.00 0.00 43.02 3.46
1197 1501 3.564225 ACGCAAGAAAAGTGGTAAGGAAG 59.436 43.478 0.00 0.00 43.62 3.46
1198 1502 3.547746 ACGCAAGAAAAGTGGTAAGGAA 58.452 40.909 0.00 0.00 43.62 3.36
1207 1515 5.123979 ACTGAAGAAAAGACGCAAGAAAAGT 59.876 36.000 0.00 0.00 43.62 2.66
1234 1542 3.354131 GCGTCCAAACAGCCAAAAA 57.646 47.368 0.00 0.00 0.00 1.94
1253 1561 0.606401 ACCAAGCCACACAAGATCCG 60.606 55.000 0.00 0.00 0.00 4.18
1256 1564 1.688197 CCAAACCAAGCCACACAAGAT 59.312 47.619 0.00 0.00 0.00 2.40
1261 1569 2.421314 GCCCAAACCAAGCCACAC 59.579 61.111 0.00 0.00 0.00 3.82
1265 1573 2.597510 ACTCGCCCAAACCAAGCC 60.598 61.111 0.00 0.00 0.00 4.35
1266 1574 2.954611 GACTCGCCCAAACCAAGC 59.045 61.111 0.00 0.00 0.00 4.01
1271 1579 0.872388 AACATTCGACTCGCCCAAAC 59.128 50.000 0.00 0.00 0.00 2.93
1273 1581 0.034198 TCAACATTCGACTCGCCCAA 59.966 50.000 0.00 0.00 0.00 4.12
1274 1582 0.249120 ATCAACATTCGACTCGCCCA 59.751 50.000 0.00 0.00 0.00 5.36
1275 1583 0.931005 GATCAACATTCGACTCGCCC 59.069 55.000 0.00 0.00 0.00 6.13
1276 1584 1.640428 TGATCAACATTCGACTCGCC 58.360 50.000 0.00 0.00 0.00 5.54
1281 1589 4.259970 CCAGAACGATGATCAACATTCGAC 60.260 45.833 20.16 13.75 39.56 4.20
1341 1649 4.162131 ACAAAAGGCAGTTCCAATTCAACT 59.838 37.500 0.00 0.00 37.29 3.16
1351 1659 3.214328 TCTCTTCCACAAAAGGCAGTTC 58.786 45.455 0.00 0.00 0.00 3.01
1401 1718 9.132923 CCACAAATACTAGAGAACCAGATAGTA 57.867 37.037 0.00 0.00 35.73 1.82
1403 1720 7.923344 CACCACAAATACTAGAGAACCAGATAG 59.077 40.741 0.00 0.00 0.00 2.08
1456 1773 2.304092 CACTATCCCTGCGTACCACTA 58.696 52.381 0.00 0.00 0.00 2.74
1579 1901 6.567602 AGGTTCTGCATCTATAAAACCTCT 57.432 37.500 0.00 0.00 41.99 3.69
1600 1922 1.909302 ACCCAGACCTGACACATTAGG 59.091 52.381 0.00 0.00 40.01 2.69
1603 1925 1.774254 TGAACCCAGACCTGACACATT 59.226 47.619 0.00 0.00 0.00 2.71
1860 2187 4.877823 CAGACCTGTAGCATAAGATTGCAA 59.122 41.667 0.00 0.00 45.23 4.08
2098 2425 0.467290 GTTGCCCACTCCCTGAAACA 60.467 55.000 0.00 0.00 0.00 2.83
2227 2554 2.563179 GCTACTGTCCATCCATATCGGT 59.437 50.000 0.00 0.00 35.57 4.69
2230 2557 4.881019 AGTGCTACTGTCCATCCATATC 57.119 45.455 0.00 0.00 0.00 1.63
2270 2597 3.190874 CTCCTCCGACAGCATTTTCTAC 58.809 50.000 0.00 0.00 0.00 2.59
2439 2766 6.063404 TCATCAATACTTGCATAGCATCCAA 58.937 36.000 0.00 0.00 38.76 3.53
2793 3124 9.361315 GGCATAAAAAGAACGTAACCATATTTT 57.639 29.630 0.00 0.00 0.00 1.82
2842 3173 6.422776 AAATACTGGAGTTACAGATTTGCG 57.577 37.500 0.00 0.00 40.97 4.85
2961 3325 7.094075 ACTGCAAATAATCTTCATTGCTTCTGA 60.094 33.333 10.25 0.00 46.27 3.27
3051 3415 2.993899 GTCACCTGACCACTGAATAACG 59.006 50.000 0.00 0.00 39.07 3.18
3177 3543 2.436417 TCACTTGCTGCTAATTGGACC 58.564 47.619 0.00 0.00 0.00 4.46
3179 3545 7.775093 AGTAATAATCACTTGCTGCTAATTGGA 59.225 33.333 0.00 0.00 0.00 3.53
3227 3593 3.446161 ACAGATGCAATGTTCCAATGGAG 59.554 43.478 0.86 0.00 31.21 3.86
3237 3603 6.264292 TGTTAAACCTACAACAGATGCAATGT 59.736 34.615 2.25 2.25 31.29 2.71
3248 3614 7.443272 AGGTGTATTCAGTGTTAAACCTACAAC 59.557 37.037 13.07 1.70 34.82 3.32
3286 3652 2.500098 GTCACTGGTACCAAGGCTGATA 59.500 50.000 17.11 0.00 0.00 2.15
3301 3667 0.809636 TGCAACTCACCGTGTCACTG 60.810 55.000 0.65 0.00 0.00 3.66
3310 3676 1.271597 ACAGGATCCTTGCAACTCACC 60.272 52.381 13.00 0.00 0.00 4.02
3348 3717 8.694850 AGATAAGTCTGACAGCAGCTTGAAAAG 61.695 40.741 10.88 0.00 42.01 2.27
3459 3828 3.939740 AGCATCACCATGTAACCATCT 57.060 42.857 0.00 0.00 31.86 2.90
3556 3925 3.512329 TGCGATCCACTTGTAGTTTCCTA 59.488 43.478 0.00 0.00 0.00 2.94
3576 3945 0.822532 CAAGGCTCCATGGATCCTGC 60.823 60.000 32.83 23.45 39.55 4.85
3651 4030 7.530863 CGTACATAGTGAGTATCTGCATGTAT 58.469 38.462 0.00 0.00 34.92 2.29
3663 4042 8.542497 TTTTTATTTGAGCGTACATAGTGAGT 57.458 30.769 0.00 0.00 0.00 3.41
3718 4097 5.707298 CCACATGAACATACAGATATTCCCC 59.293 44.000 0.00 0.00 0.00 4.81
3720 4099 6.533730 TCCCACATGAACATACAGATATTCC 58.466 40.000 0.00 0.00 0.00 3.01
3723 4102 9.507329 GTAAATCCCACATGAACATACAGATAT 57.493 33.333 0.00 0.00 0.00 1.63
3773 4154 9.054922 CCAGAATTTTCAAACATTACAAACCAT 57.945 29.630 0.00 0.00 0.00 3.55
3774 4155 7.497249 CCCAGAATTTTCAAACATTACAAACCA 59.503 33.333 0.00 0.00 0.00 3.67
3805 4186 8.645487 GTGTCAGCAAAGTAATAGTAGTTACAC 58.355 37.037 5.49 5.49 37.10 2.90
3807 4188 8.983307 AGTGTCAGCAAAGTAATAGTAGTTAC 57.017 34.615 0.00 0.00 35.33 2.50
3838 4252 4.512484 TCCGCACATCTGAAATAACATCA 58.488 39.130 0.00 0.00 0.00 3.07
3937 4351 7.746703 ACCTAAAAGACCAAGACAACTTATCT 58.253 34.615 0.00 0.00 34.38 1.98
3938 4352 7.981102 ACCTAAAAGACCAAGACAACTTATC 57.019 36.000 0.00 0.00 34.70 1.75
3940 4354 6.038936 GCAACCTAAAAGACCAAGACAACTTA 59.961 38.462 0.00 0.00 34.70 2.24
3984 4398 8.437360 TGTTACTAATCCATATGTGCTGAAAG 57.563 34.615 1.24 0.00 0.00 2.62
3988 4402 8.839343 TCAAATGTTACTAATCCATATGTGCTG 58.161 33.333 1.24 0.00 0.00 4.41
4024 4438 7.279313 GCCTGGAAAATTTATAGTTGAGACGTA 59.721 37.037 0.00 0.00 0.00 3.57
4027 4441 6.603599 AGGCCTGGAAAATTTATAGTTGAGAC 59.396 38.462 3.11 0.00 0.00 3.36
4029 4443 6.681368 GCAGGCCTGGAAAATTTATAGTTGAG 60.681 42.308 33.46 1.69 0.00 3.02
4030 4444 5.127031 GCAGGCCTGGAAAATTTATAGTTGA 59.873 40.000 33.46 0.00 0.00 3.18
4031 4445 5.127682 AGCAGGCCTGGAAAATTTATAGTTG 59.872 40.000 33.46 3.45 0.00 3.16
4032 4446 5.272402 AGCAGGCCTGGAAAATTTATAGTT 58.728 37.500 33.46 0.00 0.00 2.24
4034 4448 6.959639 TTAGCAGGCCTGGAAAATTTATAG 57.040 37.500 33.46 4.05 0.00 1.31
4035 4449 7.912778 AATTAGCAGGCCTGGAAAATTTATA 57.087 32.000 33.46 0.00 0.00 0.98
4036 4450 6.813293 AATTAGCAGGCCTGGAAAATTTAT 57.187 33.333 33.46 0.00 0.00 1.40
4037 4451 6.619329 AAATTAGCAGGCCTGGAAAATTTA 57.381 33.333 33.46 0.35 0.00 1.40
4038 4452 5.503634 AAATTAGCAGGCCTGGAAAATTT 57.496 34.783 33.46 21.42 0.00 1.82
4039 4453 5.249163 AGAAAATTAGCAGGCCTGGAAAATT 59.751 36.000 33.46 17.85 0.00 1.82
4045 4462 2.450476 ACAGAAAATTAGCAGGCCTGG 58.550 47.619 33.46 15.81 0.00 4.45
4067 4484 7.053498 AGCAAGTTTTTAACCCATGACAAAAT 58.947 30.769 0.00 0.00 0.00 1.82
4071 4488 4.646945 TGAGCAAGTTTTTAACCCATGACA 59.353 37.500 0.00 0.00 0.00 3.58
4072 4489 5.195001 TGAGCAAGTTTTTAACCCATGAC 57.805 39.130 0.00 0.00 0.00 3.06
4119 4537 9.844790 GATGAATTTCATTATGTCACACTTCAA 57.155 29.630 12.96 0.00 37.20 2.69
4165 4599 8.117956 TGGTCTTTGTAGTAGAATCCTAACCTA 58.882 37.037 0.00 0.00 0.00 3.08
4167 4601 7.179076 TGGTCTTTGTAGTAGAATCCTAACC 57.821 40.000 0.00 0.00 0.00 2.85
4235 4669 8.912988 TCACAAGAGAAATGGACAAAGTTTTAT 58.087 29.630 0.00 0.00 0.00 1.40
4262 4696 9.968870 ACAAGCGAATTTGTTTAAGGTTATAAA 57.031 25.926 0.00 0.00 38.05 1.40
4282 4723 1.369209 CAACTGCACCGAACAAGCG 60.369 57.895 0.00 0.00 0.00 4.68
4292 4733 1.098712 TCGGTGGAAACCAACTGCAC 61.099 55.000 4.33 0.00 39.46 4.57
4293 4734 0.179004 ATCGGTGGAAACCAACTGCA 60.179 50.000 4.33 0.00 39.46 4.41
4331 4772 1.929836 GATTGTCAGATGAGGCGTCAC 59.070 52.381 11.97 6.10 34.75 3.67
4360 4801 3.507233 GGATCAAATTCTTGCACCTCACA 59.493 43.478 0.00 0.00 32.14 3.58
4361 4802 3.507233 TGGATCAAATTCTTGCACCTCAC 59.493 43.478 0.00 0.00 32.47 3.51
4384 4825 6.043411 AGACCGTTAAGCATACTTCAGATTC 58.957 40.000 0.00 0.00 37.33 2.52
4392 4833 6.321690 AGACAGATAAGACCGTTAAGCATACT 59.678 38.462 0.00 0.00 0.00 2.12
4455 4904 1.789464 CTATCGCAAGGAATCGTGAGC 59.211 52.381 0.00 0.00 38.47 4.26
4459 4910 2.798499 CGAACCTATCGCAAGGAATCGT 60.798 50.000 18.16 0.00 45.89 3.73
4460 4911 1.787155 CGAACCTATCGCAAGGAATCG 59.213 52.381 9.58 13.04 45.89 3.34
4478 4930 3.822192 CCCTCGACGATGGCACGA 61.822 66.667 14.63 7.06 37.03 4.35
4517 4969 2.745884 CCAAACCGCTCGGCATGA 60.746 61.111 8.41 0.00 39.32 3.07
4571 5023 0.755079 TCTCATTGGAGGATGCTCCG 59.245 55.000 26.19 13.69 46.18 4.63
4574 5026 1.210538 TGCTCTCATTGGAGGATGCT 58.789 50.000 0.00 0.00 41.69 3.79
4611 5063 0.831711 ACGGGGCAGCCAAAGATTTT 60.832 50.000 15.19 0.00 0.00 1.82
4657 5109 2.833794 CACGAACAAGGGAGAGTTTCA 58.166 47.619 0.00 0.00 0.00 2.69
4668 5120 3.483922 TGCAAATTTTACGCACGAACAAG 59.516 39.130 0.00 0.00 0.00 3.16
4698 5150 6.795144 TTCCGTTGGTGGATAGAGTTATAA 57.205 37.500 0.00 0.00 38.00 0.98
4699 5151 6.795144 TTTCCGTTGGTGGATAGAGTTATA 57.205 37.500 0.00 0.00 38.00 0.98
4700 5152 5.687166 TTTCCGTTGGTGGATAGAGTTAT 57.313 39.130 0.00 0.00 38.00 1.89
4744 5198 8.046708 ACAATTCCACAAGCACTATCAGTATTA 58.953 33.333 0.00 0.00 0.00 0.98
4747 5201 5.804639 ACAATTCCACAAGCACTATCAGTA 58.195 37.500 0.00 0.00 0.00 2.74
4864 5318 0.543410 TCTTCTCCAGGTTGCCCGTA 60.543 55.000 0.00 0.00 35.12 4.02
4924 5378 4.016790 AGGAGCTCCCTGCCCTCA 62.017 66.667 29.54 0.00 45.61 3.86
4954 5408 2.662006 TCCTCTTCTTCATGAGCACG 57.338 50.000 0.00 0.00 0.00 5.34
5021 5475 5.923114 GCGCCATATGATATGTCCTATAGTG 59.077 44.000 11.20 2.61 0.00 2.74
5195 5649 4.085357 TCTGTAGAAACATGTGGCAGTT 57.915 40.909 0.00 0.00 34.37 3.16
5200 5654 7.149569 ACAATTCATCTGTAGAAACATGTGG 57.850 36.000 0.00 0.00 34.37 4.17
5241 5695 5.840781 CGAGTTATAGCATATTTTGTGCACG 59.159 40.000 13.13 0.00 44.87 5.34
5328 5787 2.188207 GAAGAAGCGGGCTCCTCC 59.812 66.667 0.00 0.00 0.00 4.30
5355 5814 0.918983 GTCCAACATCTCCCCCATCA 59.081 55.000 0.00 0.00 0.00 3.07
5356 5815 0.179045 CGTCCAACATCTCCCCCATC 60.179 60.000 0.00 0.00 0.00 3.51
5357 5816 1.915228 CGTCCAACATCTCCCCCAT 59.085 57.895 0.00 0.00 0.00 4.00
5358 5817 2.966732 GCGTCCAACATCTCCCCCA 61.967 63.158 0.00 0.00 0.00 4.96
5359 5818 2.124695 GCGTCCAACATCTCCCCC 60.125 66.667 0.00 0.00 0.00 5.40
5360 5819 2.511600 CGCGTCCAACATCTCCCC 60.512 66.667 0.00 0.00 0.00 4.81
5361 5820 2.292794 TAGCGCGTCCAACATCTCCC 62.293 60.000 8.43 0.00 0.00 4.30
5362 5821 1.141019 TAGCGCGTCCAACATCTCC 59.859 57.895 8.43 0.00 0.00 3.71
5363 5822 0.457853 TGTAGCGCGTCCAACATCTC 60.458 55.000 8.43 0.00 0.00 2.75
5364 5823 0.175760 ATGTAGCGCGTCCAACATCT 59.824 50.000 8.43 0.00 0.00 2.90
5365 5824 0.301687 CATGTAGCGCGTCCAACATC 59.698 55.000 8.43 0.00 30.32 3.06
5366 5825 1.089481 CCATGTAGCGCGTCCAACAT 61.089 55.000 8.43 9.77 32.91 2.71
5367 5826 1.739929 CCATGTAGCGCGTCCAACA 60.740 57.895 8.43 7.70 0.00 3.33
5368 5827 3.089784 CCATGTAGCGCGTCCAAC 58.910 61.111 8.43 1.42 0.00 3.77
5369 5828 2.817834 GCCATGTAGCGCGTCCAA 60.818 61.111 8.43 0.00 0.00 3.53
5370 5829 4.075854 TGCCATGTAGCGCGTCCA 62.076 61.111 8.43 2.00 34.65 4.02
5371 5830 3.564027 GTGCCATGTAGCGCGTCC 61.564 66.667 8.43 0.00 32.88 4.79
5375 5834 2.817423 GAGCAGTGCCATGTAGCGC 61.817 63.158 12.58 0.00 43.70 5.92
5376 5835 2.520039 CGAGCAGTGCCATGTAGCG 61.520 63.158 12.58 0.86 34.65 4.26
5377 5836 2.176273 CCGAGCAGTGCCATGTAGC 61.176 63.158 12.58 0.00 0.00 3.58
5378 5837 2.176273 GCCGAGCAGTGCCATGTAG 61.176 63.158 12.58 0.00 0.00 2.74
5379 5838 2.125147 GCCGAGCAGTGCCATGTA 60.125 61.111 12.58 0.00 0.00 2.29
5391 5850 3.191539 GAGAAGCAAGGCGCCGAG 61.192 66.667 23.20 18.91 44.04 4.63
5392 5851 4.760047 GGAGAAGCAAGGCGCCGA 62.760 66.667 23.20 0.00 44.04 5.54
5394 5853 3.130160 CTGGAGAAGCAAGGCGCC 61.130 66.667 21.89 21.89 44.04 6.53
5403 5862 2.847327 TCAAGAAGGTGCTGGAGAAG 57.153 50.000 0.00 0.00 0.00 2.85
5404 5863 2.373169 ACATCAAGAAGGTGCTGGAGAA 59.627 45.455 0.00 0.00 0.00 2.87
5405 5864 1.980765 ACATCAAGAAGGTGCTGGAGA 59.019 47.619 0.00 0.00 0.00 3.71
5406 5865 2.486472 ACATCAAGAAGGTGCTGGAG 57.514 50.000 0.00 0.00 0.00 3.86
5407 5866 2.957402 AACATCAAGAAGGTGCTGGA 57.043 45.000 0.00 0.00 0.00 3.86
5408 5867 3.379372 CCATAACATCAAGAAGGTGCTGG 59.621 47.826 0.00 0.00 0.00 4.85
5409 5868 4.095483 GTCCATAACATCAAGAAGGTGCTG 59.905 45.833 0.00 0.00 0.00 4.41
5410 5869 4.018960 AGTCCATAACATCAAGAAGGTGCT 60.019 41.667 0.00 0.00 0.00 4.40
5411 5870 4.265073 AGTCCATAACATCAAGAAGGTGC 58.735 43.478 0.00 0.00 0.00 5.01
5412 5871 6.207417 ACAAAGTCCATAACATCAAGAAGGTG 59.793 38.462 0.00 0.00 0.00 4.00
5413 5872 6.306987 ACAAAGTCCATAACATCAAGAAGGT 58.693 36.000 0.00 0.00 0.00 3.50
5414 5873 6.824305 ACAAAGTCCATAACATCAAGAAGG 57.176 37.500 0.00 0.00 0.00 3.46
5418 5877 9.573133 GGAAATTACAAAGTCCATAACATCAAG 57.427 33.333 0.00 0.00 0.00 3.02
5419 5878 8.240682 CGGAAATTACAAAGTCCATAACATCAA 58.759 33.333 0.00 0.00 0.00 2.57
5420 5879 7.627513 GCGGAAATTACAAAGTCCATAACATCA 60.628 37.037 0.00 0.00 0.00 3.07
5421 5880 6.691388 GCGGAAATTACAAAGTCCATAACATC 59.309 38.462 0.00 0.00 0.00 3.06
5422 5881 6.151985 TGCGGAAATTACAAAGTCCATAACAT 59.848 34.615 0.00 0.00 0.00 2.71
5423 5882 5.473846 TGCGGAAATTACAAAGTCCATAACA 59.526 36.000 0.00 0.00 0.00 2.41
5424 5883 5.798434 GTGCGGAAATTACAAAGTCCATAAC 59.202 40.000 0.00 0.00 0.00 1.89
5425 5884 5.106078 GGTGCGGAAATTACAAAGTCCATAA 60.106 40.000 0.00 0.00 0.00 1.90
5426 5885 4.396790 GGTGCGGAAATTACAAAGTCCATA 59.603 41.667 0.00 0.00 0.00 2.74
5427 5886 3.192633 GGTGCGGAAATTACAAAGTCCAT 59.807 43.478 0.00 0.00 0.00 3.41
5428 5887 2.554893 GGTGCGGAAATTACAAAGTCCA 59.445 45.455 0.00 0.00 0.00 4.02
5429 5888 2.817844 AGGTGCGGAAATTACAAAGTCC 59.182 45.455 0.00 0.00 0.00 3.85
5430 5889 4.226761 CAAGGTGCGGAAATTACAAAGTC 58.773 43.478 0.00 0.00 0.00 3.01
5431 5890 3.634910 ACAAGGTGCGGAAATTACAAAGT 59.365 39.130 0.00 0.00 0.00 2.66
5432 5891 4.237349 ACAAGGTGCGGAAATTACAAAG 57.763 40.909 0.00 0.00 0.00 2.77
5433 5892 4.657436 AACAAGGTGCGGAAATTACAAA 57.343 36.364 0.00 0.00 0.00 2.83
5434 5893 4.822896 AGTAACAAGGTGCGGAAATTACAA 59.177 37.500 0.00 0.00 0.00 2.41
5435 5894 4.391155 AGTAACAAGGTGCGGAAATTACA 58.609 39.130 0.00 0.00 0.00 2.41
5436 5895 4.435121 CGAGTAACAAGGTGCGGAAATTAC 60.435 45.833 0.00 0.00 0.00 1.89
5437 5896 3.680937 CGAGTAACAAGGTGCGGAAATTA 59.319 43.478 0.00 0.00 0.00 1.40
5438 5897 2.482721 CGAGTAACAAGGTGCGGAAATT 59.517 45.455 0.00 0.00 0.00 1.82
5439 5898 2.073816 CGAGTAACAAGGTGCGGAAAT 58.926 47.619 0.00 0.00 0.00 2.17
5440 5899 1.202557 ACGAGTAACAAGGTGCGGAAA 60.203 47.619 0.00 0.00 0.00 3.13
5441 5900 0.390124 ACGAGTAACAAGGTGCGGAA 59.610 50.000 0.00 0.00 0.00 4.30
5442 5901 0.390124 AACGAGTAACAAGGTGCGGA 59.610 50.000 0.00 0.00 0.00 5.54
5443 5902 0.511221 CAACGAGTAACAAGGTGCGG 59.489 55.000 0.00 0.00 0.00 5.69
5444 5903 1.214367 ACAACGAGTAACAAGGTGCG 58.786 50.000 0.00 0.00 0.00 5.34
5445 5904 2.154389 CGTACAACGAGTAACAAGGTGC 59.846 50.000 0.00 0.00 46.05 5.01
5446 5905 2.727798 CCGTACAACGAGTAACAAGGTG 59.272 50.000 0.15 0.00 46.05 4.00
5447 5906 2.622942 TCCGTACAACGAGTAACAAGGT 59.377 45.455 0.15 0.00 46.05 3.50
5448 5907 3.287312 TCCGTACAACGAGTAACAAGG 57.713 47.619 0.15 0.00 46.05 3.61
5449 5908 6.088824 ACTAATCCGTACAACGAGTAACAAG 58.911 40.000 0.15 0.00 46.05 3.16
5450 5909 6.012658 ACTAATCCGTACAACGAGTAACAA 57.987 37.500 0.15 0.00 46.05 2.83
5451 5910 5.627499 ACTAATCCGTACAACGAGTAACA 57.373 39.130 0.15 0.00 46.05 2.41
5452 5911 5.287035 CCAACTAATCCGTACAACGAGTAAC 59.713 44.000 0.15 0.00 46.05 2.50
5453 5912 5.048083 ACCAACTAATCCGTACAACGAGTAA 60.048 40.000 0.15 0.00 46.05 2.24
5454 5913 4.458989 ACCAACTAATCCGTACAACGAGTA 59.541 41.667 0.15 0.00 46.05 2.59
5455 5914 3.256631 ACCAACTAATCCGTACAACGAGT 59.743 43.478 0.15 0.00 46.05 4.18
5456 5915 3.841643 ACCAACTAATCCGTACAACGAG 58.158 45.455 0.15 0.00 46.05 4.18
5457 5916 3.940209 ACCAACTAATCCGTACAACGA 57.060 42.857 0.15 0.00 46.05 3.85
5458 5917 3.423907 GCAACCAACTAATCCGTACAACG 60.424 47.826 0.00 0.00 42.11 4.10
5459 5918 3.749609 AGCAACCAACTAATCCGTACAAC 59.250 43.478 0.00 0.00 0.00 3.32
5460 5919 4.010667 AGCAACCAACTAATCCGTACAA 57.989 40.909 0.00 0.00 0.00 2.41
5461 5920 3.688694 AGCAACCAACTAATCCGTACA 57.311 42.857 0.00 0.00 0.00 2.90
5462 5921 5.366829 AAAAGCAACCAACTAATCCGTAC 57.633 39.130 0.00 0.00 0.00 3.67
5464 5923 4.929819 AAAAAGCAACCAACTAATCCGT 57.070 36.364 0.00 0.00 0.00 4.69
5492 5951 5.309282 TGAAATAGGCTTTCACCCCATTTTT 59.691 36.000 0.00 0.00 33.90 1.94
5493 5952 4.843516 TGAAATAGGCTTTCACCCCATTTT 59.156 37.500 0.00 0.00 33.90 1.82
5494 5953 4.424842 TGAAATAGGCTTTCACCCCATTT 58.575 39.130 0.00 0.00 33.90 2.32
5495 5954 4.059773 TGAAATAGGCTTTCACCCCATT 57.940 40.909 0.00 0.00 33.90 3.16
5496 5955 3.756082 TGAAATAGGCTTTCACCCCAT 57.244 42.857 0.00 0.00 33.90 4.00
5497 5956 3.075283 TCTTGAAATAGGCTTTCACCCCA 59.925 43.478 1.16 0.00 38.05 4.96
5498 5957 3.697166 TCTTGAAATAGGCTTTCACCCC 58.303 45.455 1.16 0.00 38.05 4.95
5499 5958 4.098501 CCATCTTGAAATAGGCTTTCACCC 59.901 45.833 1.16 0.00 38.05 4.61
5500 5959 4.440663 GCCATCTTGAAATAGGCTTTCACC 60.441 45.833 1.16 0.00 42.01 4.02
5501 5960 4.440663 GGCCATCTTGAAATAGGCTTTCAC 60.441 45.833 0.00 0.00 44.60 3.18
5502 5961 3.701040 GGCCATCTTGAAATAGGCTTTCA 59.299 43.478 0.00 0.00 44.60 2.69
5503 5962 3.701040 TGGCCATCTTGAAATAGGCTTTC 59.299 43.478 0.00 0.00 44.60 2.62
5504 5963 3.448660 GTGGCCATCTTGAAATAGGCTTT 59.551 43.478 9.72 0.00 44.60 3.51
5505 5964 3.026694 GTGGCCATCTTGAAATAGGCTT 58.973 45.455 9.72 0.00 44.60 4.35
5506 5965 2.659428 GTGGCCATCTTGAAATAGGCT 58.341 47.619 9.72 0.00 44.60 4.58
5507 5966 1.334869 CGTGGCCATCTTGAAATAGGC 59.665 52.381 9.72 0.00 44.48 3.93
5508 5967 2.874701 CTCGTGGCCATCTTGAAATAGG 59.125 50.000 9.72 0.00 0.00 2.57
5509 5968 2.874701 CCTCGTGGCCATCTTGAAATAG 59.125 50.000 9.72 0.00 0.00 1.73
5510 5969 2.238646 ACCTCGTGGCCATCTTGAAATA 59.761 45.455 9.72 0.00 36.63 1.40
5511 5970 1.004745 ACCTCGTGGCCATCTTGAAAT 59.995 47.619 9.72 0.00 36.63 2.17
5512 5971 0.400213 ACCTCGTGGCCATCTTGAAA 59.600 50.000 9.72 0.00 36.63 2.69
5513 5972 0.400213 AACCTCGTGGCCATCTTGAA 59.600 50.000 9.72 0.00 36.63 2.69
5514 5973 0.400213 AAACCTCGTGGCCATCTTGA 59.600 50.000 9.72 4.08 36.63 3.02
5515 5974 2.107950 TAAACCTCGTGGCCATCTTG 57.892 50.000 9.72 0.50 36.63 3.02
5516 5975 2.618045 CCTTAAACCTCGTGGCCATCTT 60.618 50.000 9.72 0.00 36.63 2.40
5517 5976 1.065418 CCTTAAACCTCGTGGCCATCT 60.065 52.381 9.72 0.00 36.63 2.90
5518 5977 1.379527 CCTTAAACCTCGTGGCCATC 58.620 55.000 9.72 1.29 36.63 3.51
5519 5978 0.679960 GCCTTAAACCTCGTGGCCAT 60.680 55.000 9.72 0.00 37.81 4.40
5520 5979 1.302993 GCCTTAAACCTCGTGGCCA 60.303 57.895 0.00 0.00 37.81 5.36
5521 5980 0.679960 ATGCCTTAAACCTCGTGGCC 60.680 55.000 2.76 0.00 42.62 5.36
5522 5981 0.733150 GATGCCTTAAACCTCGTGGC 59.267 55.000 2.76 0.00 43.49 5.01
5523 5982 2.280628 GAGATGCCTTAAACCTCGTGG 58.719 52.381 0.99 0.99 39.83 4.94
5524 5983 2.280628 GGAGATGCCTTAAACCTCGTG 58.719 52.381 0.00 0.00 0.00 4.35
5525 5984 1.906574 TGGAGATGCCTTAAACCTCGT 59.093 47.619 0.00 0.00 37.63 4.18
5526 5985 2.691409 TGGAGATGCCTTAAACCTCG 57.309 50.000 0.00 0.00 37.63 4.63
5527 5986 4.379499 CGTTTTGGAGATGCCTTAAACCTC 60.379 45.833 0.00 0.00 38.00 3.85
5528 5987 3.506067 CGTTTTGGAGATGCCTTAAACCT 59.494 43.478 0.00 0.00 38.00 3.50
5529 5988 3.366985 CCGTTTTGGAGATGCCTTAAACC 60.367 47.826 0.00 0.00 42.00 3.27
5530 5989 3.254903 ACCGTTTTGGAGATGCCTTAAAC 59.745 43.478 0.00 0.00 42.00 2.01
5531 5990 3.492337 ACCGTTTTGGAGATGCCTTAAA 58.508 40.909 0.00 0.00 42.00 1.52
5532 5991 3.078837 GACCGTTTTGGAGATGCCTTAA 58.921 45.455 0.00 0.00 42.00 1.85
5533 5992 2.617021 GGACCGTTTTGGAGATGCCTTA 60.617 50.000 0.00 0.00 42.00 2.69
5534 5993 1.534729 GACCGTTTTGGAGATGCCTT 58.465 50.000 0.00 0.00 42.00 4.35
5535 5994 0.322546 GGACCGTTTTGGAGATGCCT 60.323 55.000 0.00 0.00 42.00 4.75
5536 5995 1.313091 GGGACCGTTTTGGAGATGCC 61.313 60.000 0.00 0.00 42.00 4.40
5537 5996 0.322546 AGGGACCGTTTTGGAGATGC 60.323 55.000 0.00 0.00 42.00 3.91
5538 5997 1.003118 TGAGGGACCGTTTTGGAGATG 59.997 52.381 0.00 0.00 42.00 2.90
5539 5998 1.358152 TGAGGGACCGTTTTGGAGAT 58.642 50.000 0.00 0.00 42.00 2.75
5540 5999 1.133363 TTGAGGGACCGTTTTGGAGA 58.867 50.000 0.00 0.00 42.00 3.71
5541 6000 1.202770 AGTTGAGGGACCGTTTTGGAG 60.203 52.381 0.00 0.00 42.00 3.86
5542 6001 0.841289 AGTTGAGGGACCGTTTTGGA 59.159 50.000 0.00 0.00 42.00 3.53
5543 6002 0.951558 CAGTTGAGGGACCGTTTTGG 59.048 55.000 0.00 0.00 46.41 3.28
5544 6003 1.602377 GACAGTTGAGGGACCGTTTTG 59.398 52.381 0.00 0.00 0.00 2.44
5545 6004 1.489230 AGACAGTTGAGGGACCGTTTT 59.511 47.619 0.00 0.00 0.00 2.43
5546 6005 1.129058 AGACAGTTGAGGGACCGTTT 58.871 50.000 0.00 0.00 0.00 3.60
5547 6006 1.617357 GTAGACAGTTGAGGGACCGTT 59.383 52.381 0.00 0.00 0.00 4.44
5548 6007 1.254954 GTAGACAGTTGAGGGACCGT 58.745 55.000 0.00 0.00 0.00 4.83
5549 6008 1.254026 TGTAGACAGTTGAGGGACCG 58.746 55.000 0.00 0.00 0.00 4.79
5550 6009 2.289506 GGTTGTAGACAGTTGAGGGACC 60.290 54.545 0.00 0.00 0.00 4.46
5551 6010 2.367567 TGGTTGTAGACAGTTGAGGGAC 59.632 50.000 0.00 0.00 0.00 4.46
5552 6011 2.684943 TGGTTGTAGACAGTTGAGGGA 58.315 47.619 0.00 0.00 0.00 4.20
5553 6012 3.600388 GATGGTTGTAGACAGTTGAGGG 58.400 50.000 0.00 0.00 0.00 4.30
5554 6013 3.600388 GGATGGTTGTAGACAGTTGAGG 58.400 50.000 0.00 0.00 0.00 3.86
5555 6014 3.254060 CGGATGGTTGTAGACAGTTGAG 58.746 50.000 0.00 0.00 0.00 3.02
5556 6015 2.028476 CCGGATGGTTGTAGACAGTTGA 60.028 50.000 0.00 0.00 0.00 3.18
5557 6016 2.028476 TCCGGATGGTTGTAGACAGTTG 60.028 50.000 0.00 0.00 36.30 3.16
5558 6017 2.028385 GTCCGGATGGTTGTAGACAGTT 60.028 50.000 7.81 0.00 36.30 3.16
5559 6018 1.549170 GTCCGGATGGTTGTAGACAGT 59.451 52.381 7.81 0.00 36.30 3.55
5560 6019 1.825474 AGTCCGGATGGTTGTAGACAG 59.175 52.381 7.81 0.00 36.30 3.51
5561 6020 1.548719 CAGTCCGGATGGTTGTAGACA 59.451 52.381 7.81 0.00 36.30 3.41
5562 6021 1.739371 GCAGTCCGGATGGTTGTAGAC 60.739 57.143 7.81 0.00 36.30 2.59
5563 6022 0.535335 GCAGTCCGGATGGTTGTAGA 59.465 55.000 7.81 0.00 36.30 2.59
5564 6023 0.806102 CGCAGTCCGGATGGTTGTAG 60.806 60.000 7.81 0.11 36.30 2.74
5565 6024 1.216977 CGCAGTCCGGATGGTTGTA 59.783 57.895 7.81 0.00 36.30 2.41
5566 6025 2.047274 CGCAGTCCGGATGGTTGT 60.047 61.111 7.81 0.00 36.30 3.32
5567 6026 2.047274 ACGCAGTCCGGATGGTTG 60.047 61.111 7.81 5.62 29.74 3.77
5568 6027 2.047274 CACGCAGTCCGGATGGTT 60.047 61.111 7.81 0.00 41.61 3.67
5569 6028 4.082523 CCACGCAGTCCGGATGGT 62.083 66.667 7.81 0.00 41.61 3.55
5570 6029 4.082523 ACCACGCAGTCCGGATGG 62.083 66.667 17.72 17.72 41.61 3.51
5571 6030 2.509336 GACCACGCAGTCCGGATG 60.509 66.667 7.81 8.52 41.61 3.51
5572 6031 4.129737 CGACCACGCAGTCCGGAT 62.130 66.667 7.81 0.00 41.61 4.18
5577 6036 2.262471 ATACGTCCGACCACGCAGTC 62.262 60.000 0.00 0.00 41.61 3.51
5579 6038 0.734942 AAATACGTCCGACCACGCAG 60.735 55.000 0.00 0.00 43.93 5.18
5580 6039 0.319727 AAAATACGTCCGACCACGCA 60.320 50.000 0.00 0.00 43.93 5.24
5581 6040 0.094046 CAAAATACGTCCGACCACGC 59.906 55.000 0.00 0.00 43.93 5.34
5582 6041 1.387756 GACAAAATACGTCCGACCACG 59.612 52.381 0.00 0.69 45.65 4.94
5583 6042 2.156310 GTGACAAAATACGTCCGACCAC 59.844 50.000 0.00 0.00 32.15 4.16
5584 6043 2.406130 GTGACAAAATACGTCCGACCA 58.594 47.619 0.00 0.00 32.15 4.02
5585 6044 1.728425 GGTGACAAAATACGTCCGACC 59.272 52.381 0.00 0.00 32.15 4.79
5586 6045 1.728425 GGGTGACAAAATACGTCCGAC 59.272 52.381 0.00 0.00 32.15 4.79
5587 6046 1.343789 TGGGTGACAAAATACGTCCGA 59.656 47.619 0.00 0.00 32.15 4.55
5588 6047 1.798283 TGGGTGACAAAATACGTCCG 58.202 50.000 0.00 0.00 32.15 4.79
5589 6048 2.096119 CGTTGGGTGACAAAATACGTCC 60.096 50.000 0.00 0.00 41.58 4.79
5590 6049 2.801679 TCGTTGGGTGACAAAATACGTC 59.198 45.455 0.00 0.00 41.58 4.34
5591 6050 2.836262 TCGTTGGGTGACAAAATACGT 58.164 42.857 0.00 0.00 41.58 3.57
5592 6051 3.187637 ACATCGTTGGGTGACAAAATACG 59.812 43.478 0.00 0.00 41.58 3.06
5593 6052 4.759516 ACATCGTTGGGTGACAAAATAC 57.240 40.909 0.00 0.00 41.58 1.89
5594 6053 4.389382 CGTACATCGTTGGGTGACAAAATA 59.611 41.667 0.00 0.00 41.58 1.40
5595 6054 3.187637 CGTACATCGTTGGGTGACAAAAT 59.812 43.478 0.00 0.00 41.58 1.82
5596 6055 2.544686 CGTACATCGTTGGGTGACAAAA 59.455 45.455 0.00 0.00 41.58 2.44
5597 6056 2.136728 CGTACATCGTTGGGTGACAAA 58.863 47.619 0.00 0.00 41.58 2.83
5598 6057 1.785768 CGTACATCGTTGGGTGACAA 58.214 50.000 0.00 0.00 36.54 3.18
5599 6058 3.500455 CGTACATCGTTGGGTGACA 57.500 52.632 0.00 0.00 34.52 3.58
5609 6068 2.581409 GCCCGTGGACGTACATCG 60.581 66.667 2.42 9.78 46.00 3.84
5610 6069 2.202837 GGCCCGTGGACGTACATC 60.203 66.667 2.42 0.00 37.74 3.06
5617 6076 3.834799 CTAGACCGGCCCGTGGAC 61.835 72.222 0.00 0.00 0.00 4.02
5619 6078 3.834799 GTCTAGACCGGCCCGTGG 61.835 72.222 12.13 0.00 0.00 4.94
5622 6081 3.885521 GACGTCTAGACCGGCCCG 61.886 72.222 17.23 6.95 0.00 6.13
5646 6105 1.743252 GCCTCCTCCAGTTTGCGAG 60.743 63.158 0.00 0.00 0.00 5.03
5647 6106 1.768684 AAGCCTCCTCCAGTTTGCGA 61.769 55.000 0.00 0.00 0.00 5.10
5648 6107 0.890996 AAAGCCTCCTCCAGTTTGCG 60.891 55.000 0.00 0.00 0.00 4.85
5649 6108 0.600057 CAAAGCCTCCTCCAGTTTGC 59.400 55.000 0.00 0.00 0.00 3.68
5650 6109 0.600057 GCAAAGCCTCCTCCAGTTTG 59.400 55.000 0.00 0.00 0.00 2.93
5662 6121 0.822164 TACTAGACTCCGGCAAAGCC 59.178 55.000 0.00 0.00 46.75 4.35
5670 6129 2.869192 GTTCTACGGGTACTAGACTCCG 59.131 54.545 16.37 16.37 43.54 4.63
5677 6136 2.236146 TGTCGGAGTTCTACGGGTACTA 59.764 50.000 4.58 0.00 0.00 1.82
5678 6137 1.003580 TGTCGGAGTTCTACGGGTACT 59.996 52.381 4.58 0.00 0.00 2.73
5681 6140 1.246737 GGTGTCGGAGTTCTACGGGT 61.247 60.000 4.58 0.00 0.00 5.28
5682 6141 0.964358 AGGTGTCGGAGTTCTACGGG 60.964 60.000 4.58 0.00 0.00 5.28
5701 7935 2.522193 GTTTTTGGGTGGGCCGGA 60.522 61.111 5.05 0.00 34.97 5.14
5738 7976 4.224594 ACAGATGCAGAGAAAGATGGAAGA 59.775 41.667 0.00 0.00 0.00 2.87
5746 7984 6.557291 AAGAGAAAACAGATGCAGAGAAAG 57.443 37.500 0.00 0.00 0.00 2.62
5759 9765 0.030101 CGGCGGCAAAAGAGAAAACA 59.970 50.000 10.53 0.00 0.00 2.83
5760 9766 1.275471 GCGGCGGCAAAAGAGAAAAC 61.275 55.000 9.78 0.00 39.62 2.43
5804 9816 2.669240 GAGTTCCGGGAAGGGTGG 59.331 66.667 10.35 0.00 41.52 4.61
5841 9853 0.179108 GTGGAGCCTAAGTGTAGCGG 60.179 60.000 0.00 0.00 0.00 5.52
5850 9862 1.192146 AGAAGCGGTGTGGAGCCTAA 61.192 55.000 0.00 0.00 0.00 2.69
5861 9873 3.764466 CGGCAGAGGAGAAGCGGT 61.764 66.667 0.00 0.00 0.00 5.68
5876 9888 3.934391 GAGAGGTGTGAACCGGCGG 62.934 68.421 27.06 27.06 34.28 6.13
5882 9894 1.079750 GCGGAGGAGAGGTGTGAAC 60.080 63.158 0.00 0.00 0.00 3.18
5933 9947 1.302511 ACTTGTCGGGCATGGTGAC 60.303 57.895 0.00 0.00 0.00 3.67
5957 9971 3.951775 AATTTAGCACGGCCATTTCAA 57.048 38.095 2.24 0.00 0.00 2.69
5965 9979 2.729360 GGACAACAAAATTTAGCACGGC 59.271 45.455 0.00 0.00 0.00 5.68
6050 10066 3.494378 TCGTCCGACGAGTCATCC 58.506 61.111 19.51 0.00 46.73 3.51
6077 10093 0.172578 TCATCGCCGTCTCATTCGTT 59.827 50.000 0.00 0.00 0.00 3.85
6081 10097 2.288457 CCTACATCATCGCCGTCTCATT 60.288 50.000 0.00 0.00 0.00 2.57
6125 10141 4.845580 AGAGCATGCCCTTCCGCG 62.846 66.667 15.66 0.00 0.00 6.46
6133 10149 2.159142 CCCTTGAAATTGAGAGCATGCC 60.159 50.000 15.66 6.03 0.00 4.40
6139 10155 3.334583 TCGACCCCTTGAAATTGAGAG 57.665 47.619 0.00 0.00 0.00 3.20
6155 10171 0.598680 CTCGATGGCCCTTGATCGAC 60.599 60.000 18.90 0.00 44.13 4.20
6167 10183 0.807275 TGCGATTGAGCACTCGATGG 60.807 55.000 13.34 5.44 42.92 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.