Multiple sequence alignment - TraesCS2D01G151100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G151100 chr2D 100.000 4870 0 0 1 4870 94311017 94315886 0.000000e+00 8994
1 TraesCS2D01G151100 chr2B 94.777 2087 81 16 2648 4722 146437233 146439303 0.000000e+00 3225
2 TraesCS2D01G151100 chr2B 96.234 1832 51 10 792 2612 146435411 146437235 0.000000e+00 2985
3 TraesCS2D01G151100 chr2A 95.941 1823 49 6 1035 2849 92311499 92313304 0.000000e+00 2933
4 TraesCS2D01G151100 chr2A 96.701 1182 31 5 2879 4056 92313300 92314477 0.000000e+00 1960
5 TraesCS2D01G151100 chr2A 93.267 802 43 8 1 794 679873580 679874378 0.000000e+00 1171
6 TraesCS2D01G151100 chr2A 80.276 725 103 32 1 707 563219571 563220273 1.210000e-140 510
7 TraesCS2D01G151100 chr2A 91.732 254 12 2 4085 4338 92314477 92314721 1.300000e-90 344
8 TraesCS2D01G151100 chr2A 94.318 176 6 4 792 966 92310433 92310605 2.890000e-67 267
9 TraesCS2D01G151100 chr2A 90.000 140 14 0 4731 4870 617429582 617429443 1.080000e-41 182
10 TraesCS2D01G151100 chr2A 100.000 55 0 0 932 986 92310662 92310716 8.620000e-18 102
11 TraesCS2D01G151100 chr3D 93.205 780 31 7 1 776 536890990 536891751 0.000000e+00 1127
12 TraesCS2D01G151100 chr3D 90.759 790 54 13 1 780 24217201 24216421 0.000000e+00 1037
13 TraesCS2D01G151100 chr3D 88.199 161 16 3 4712 4870 24569540 24569699 6.430000e-44 189
14 TraesCS2D01G151100 chr1A 91.955 808 53 9 1 800 364878516 364877713 0.000000e+00 1122
15 TraesCS2D01G151100 chr1A 89.677 155 14 2 4717 4869 554783241 554783395 3.850000e-46 196
16 TraesCS2D01G151100 chr5A 91.729 798 56 7 1 794 245851027 245851818 0.000000e+00 1099
17 TraesCS2D01G151100 chr5A 87.821 156 17 2 4717 4870 547713434 547713279 1.080000e-41 182
18 TraesCS2D01G151100 chr4A 89.853 611 27 11 188 795 620645130 620644552 0.000000e+00 752
19 TraesCS2D01G151100 chr4A 92.672 464 30 4 1 460 620645583 620645120 0.000000e+00 665
20 TraesCS2D01G151100 chr7D 83.455 683 95 12 35 707 479656756 479656082 1.930000e-173 619
21 TraesCS2D01G151100 chr7D 89.103 156 15 2 4717 4870 475155231 475155386 4.970000e-45 193
22 TraesCS2D01G151100 chr7D 88.462 156 15 3 4717 4869 469225060 469224905 8.320000e-43 185
23 TraesCS2D01G151100 chr7D 87.821 156 17 2 4717 4870 164642093 164642248 1.080000e-41 182
24 TraesCS2D01G151100 chr7A 87.843 510 44 12 291 795 638569119 638568623 2.530000e-162 582
25 TraesCS2D01G151100 chr1D 88.961 154 14 3 4717 4868 466406960 466407112 2.310000e-43 187
26 TraesCS2D01G151100 chr5B 87.975 158 15 3 4717 4870 526636037 526635880 2.990000e-42 183


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G151100 chr2D 94311017 94315886 4869 False 8994.0 8994 100.0000 1 4870 1 chr2D.!!$F1 4869
1 TraesCS2D01G151100 chr2B 146435411 146439303 3892 False 3105.0 3225 95.5055 792 4722 2 chr2B.!!$F1 3930
2 TraesCS2D01G151100 chr2A 679873580 679874378 798 False 1171.0 1171 93.2670 1 794 1 chr2A.!!$F2 793
3 TraesCS2D01G151100 chr2A 92310433 92314721 4288 False 1121.2 2933 95.7384 792 4338 5 chr2A.!!$F3 3546
4 TraesCS2D01G151100 chr2A 563219571 563220273 702 False 510.0 510 80.2760 1 707 1 chr2A.!!$F1 706
5 TraesCS2D01G151100 chr3D 536890990 536891751 761 False 1127.0 1127 93.2050 1 776 1 chr3D.!!$F2 775
6 TraesCS2D01G151100 chr3D 24216421 24217201 780 True 1037.0 1037 90.7590 1 780 1 chr3D.!!$R1 779
7 TraesCS2D01G151100 chr1A 364877713 364878516 803 True 1122.0 1122 91.9550 1 800 1 chr1A.!!$R1 799
8 TraesCS2D01G151100 chr5A 245851027 245851818 791 False 1099.0 1099 91.7290 1 794 1 chr5A.!!$F1 793
9 TraesCS2D01G151100 chr4A 620644552 620645583 1031 True 708.5 752 91.2625 1 795 2 chr4A.!!$R1 794
10 TraesCS2D01G151100 chr7D 479656082 479656756 674 True 619.0 619 83.4550 35 707 1 chr7D.!!$R2 672

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
825 1109 1.339151 GGAACACCCGAGCAAATCTCT 60.339 52.381 0.0 0.0 39.70 3.10 F
1685 2794 1.135575 GCACTTATGTCTGCCTGTTGC 60.136 52.381 0.0 0.0 41.77 4.17 F
2388 3506 1.399440 CGTGGATTCTGTTGATGCCAG 59.601 52.381 0.0 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1808 2925 0.374758 CATGAACGCGGATTGTCCAG 59.625 55.0 12.47 0.0 35.91 3.86 R
2555 3682 1.123861 ACTGCTCCCTGCTGAGACAA 61.124 55.0 3.16 0.0 42.27 3.18 R
4135 5271 1.284657 CAGCGGCTCTTACATCAGTG 58.715 55.0 0.00 0.0 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 68 1.348538 CGCACGCGTGGATCAAACTA 61.349 55.000 37.47 0.00 34.35 2.24
112 118 1.745489 CCAACCGAGCTAGCAACCC 60.745 63.158 18.83 1.94 0.00 4.11
137 143 3.722295 TGTTAACGCAGCGCCAGC 61.722 61.111 16.61 8.31 45.58 4.85
144 150 2.764314 CGCAGCGCCAGCCTTAAAT 61.764 57.895 15.71 0.00 46.67 1.40
157 163 5.820947 CCAGCCTTAAATTATGTAAGACGGT 59.179 40.000 3.83 0.00 31.37 4.83
168 178 1.471287 GTAAGACGGTGGCAAAATCCC 59.529 52.381 0.00 0.00 0.00 3.85
610 887 7.725818 AAAACCGGAACAAAACAACTAAAAA 57.274 28.000 9.46 0.00 0.00 1.94
751 1034 2.863153 CTTGCCTCAGCGAAACCG 59.137 61.111 0.00 0.00 44.31 4.44
825 1109 1.339151 GGAACACCCGAGCAAATCTCT 60.339 52.381 0.00 0.00 39.70 3.10
826 1110 2.003301 GAACACCCGAGCAAATCTCTC 58.997 52.381 0.00 0.00 39.70 3.20
893 1177 1.843368 CAACATGGCCCACTTGAGAT 58.157 50.000 0.00 0.00 0.00 2.75
928 1274 4.151867 ACTCGCTTTTCCAATACTTCGAAC 59.848 41.667 0.00 0.00 0.00 3.95
1336 2445 5.875359 AGGTAACAAATCAATCTCGTTCTCC 59.125 40.000 0.00 0.00 41.41 3.71
1466 2575 6.995511 AATTGCAAAGGATGATCCATTTTG 57.004 33.333 14.90 16.34 39.61 2.44
1484 2593 1.243342 TGAGGAGGCAAATTGGTGCG 61.243 55.000 0.00 0.00 45.91 5.34
1513 2622 4.473196 TGTGTGTAATGTGGGTCAGGATAT 59.527 41.667 0.00 0.00 0.00 1.63
1514 2623 4.816385 GTGTGTAATGTGGGTCAGGATATG 59.184 45.833 0.00 0.00 0.00 1.78
1516 2625 3.716353 TGTAATGTGGGTCAGGATATGCT 59.284 43.478 0.00 0.00 0.00 3.79
1680 2789 4.826274 TCTTAAGCACTTATGTCTGCCT 57.174 40.909 0.00 0.00 33.57 4.75
1681 2790 4.507710 TCTTAAGCACTTATGTCTGCCTG 58.492 43.478 0.00 0.00 33.57 4.85
1682 2791 2.867109 AAGCACTTATGTCTGCCTGT 57.133 45.000 0.00 0.00 33.57 4.00
1683 2792 2.867109 AGCACTTATGTCTGCCTGTT 57.133 45.000 0.00 0.00 33.57 3.16
1684 2793 2.430465 AGCACTTATGTCTGCCTGTTG 58.570 47.619 0.00 0.00 33.57 3.33
1685 2794 1.135575 GCACTTATGTCTGCCTGTTGC 60.136 52.381 0.00 0.00 41.77 4.17
1703 2820 5.877031 TGTTGCATTGTTTTGTCAAATTGG 58.123 33.333 0.00 0.00 0.00 3.16
1808 2925 5.668558 ATCGAAAACTGTACCTGTTGTTC 57.331 39.130 0.00 7.44 0.00 3.18
1858 2975 7.648510 GGGATAGTATCGAGAAGTACAAAACTG 59.351 40.741 4.06 0.00 38.88 3.16
1897 3014 1.741706 CATGTGCAAGGAGTTAGCAGG 59.258 52.381 0.00 0.00 39.21 4.85
1975 3092 2.264455 AGTCCTCTTGCTTGGTGAGAT 58.736 47.619 0.00 0.00 0.00 2.75
2276 3393 9.396022 ACATGTTTTAATCGGATCTGATTACTT 57.604 29.630 28.89 18.58 39.79 2.24
2388 3506 1.399440 CGTGGATTCTGTTGATGCCAG 59.601 52.381 0.00 0.00 0.00 4.85
2407 3525 7.828508 TGCCAGAGAAAAATATAATCTGCAT 57.171 32.000 0.00 0.00 36.82 3.96
2429 3547 6.600427 GCATCCCAAAATCCTTGAAATTTGAT 59.400 34.615 0.00 0.00 35.34 2.57
2467 3586 6.830912 AGTAACCATGTGTGTATCATGCTAT 58.169 36.000 0.00 0.00 40.63 2.97
2468 3587 6.931281 AGTAACCATGTGTGTATCATGCTATC 59.069 38.462 0.00 0.00 40.63 2.08
2469 3588 4.645535 ACCATGTGTGTATCATGCTATCC 58.354 43.478 0.00 0.00 40.63 2.59
2470 3589 4.005650 CCATGTGTGTATCATGCTATCCC 58.994 47.826 0.00 0.00 40.63 3.85
2471 3590 4.505390 CCATGTGTGTATCATGCTATCCCA 60.505 45.833 0.00 0.00 40.63 4.37
2594 3721 4.917998 CAGTGTGTATCTGCATATACCGTC 59.082 45.833 16.95 9.69 32.36 4.79
2642 3769 6.539649 TTATTTCTTGCAGTACACTGTCAC 57.460 37.500 10.87 0.00 45.45 3.67
2674 3801 7.279313 GCCATCATGAGATTTTGTTTAAATGCT 59.721 33.333 0.09 0.00 36.59 3.79
2687 3814 6.299141 TGTTTAAATGCTTTCTCAGTCCTCT 58.701 36.000 0.00 0.00 0.00 3.69
2705 3832 5.068460 GTCCTCTAGAGCTTCATCTTGCTAA 59.932 44.000 14.73 0.00 39.91 3.09
3129 4259 3.570540 CTCATCTGGACAGAGATACCCA 58.429 50.000 8.14 0.00 41.33 4.51
3243 4373 2.952978 CGCCTCTATCAGACAGGTAAGT 59.047 50.000 0.00 0.00 0.00 2.24
3280 4410 3.900966 TCTGCTCTACTTGCATCACAT 57.099 42.857 0.00 0.00 39.86 3.21
3440 4570 9.535878 GACCATTCCTAAGTAATTCAACTAGAG 57.464 37.037 0.00 0.00 0.00 2.43
3693 4827 5.664457 TGGCATACTCATCTAACTTCAGTG 58.336 41.667 0.00 0.00 0.00 3.66
3794 4928 8.902806 ACATTTGTGAAGACAATGAAAGAACTA 58.097 29.630 0.00 0.00 41.77 2.24
3908 5042 9.072375 TGTCATTGACATTAATGGTTAGAAACA 57.928 29.630 19.37 11.59 37.67 2.83
4065 5201 7.154656 TCCAGACAAGATATATGTTCCATTCG 58.845 38.462 0.00 0.00 0.00 3.34
4110 5246 3.578716 TGTAGTTGGGAACAGAAGAGAGG 59.421 47.826 0.00 0.00 44.54 3.69
4135 5271 7.587392 GGTTACGACTTATTTTTGGTGTTGTAC 59.413 37.037 0.00 0.00 30.17 2.90
4178 5314 5.105595 GGATCTGCCAGCTAAGAAAACAAAT 60.106 40.000 0.00 0.00 36.34 2.32
4179 5315 6.095440 GGATCTGCCAGCTAAGAAAACAAATA 59.905 38.462 0.00 0.00 36.34 1.40
4180 5316 6.500684 TCTGCCAGCTAAGAAAACAAATAG 57.499 37.500 0.00 0.00 0.00 1.73
4221 5357 5.816777 ACTACACTTTTGTTGCGTTACCTTA 59.183 36.000 0.00 0.00 37.15 2.69
4309 5445 4.829872 TTGCTCCCTCTTTCCGTAAATA 57.170 40.909 0.00 0.00 0.00 1.40
4340 5476 1.234821 TGCCTTTTTCACAGCCTACG 58.765 50.000 0.00 0.00 0.00 3.51
4398 5534 3.393278 TGCCGATAAAATAGTTAGGGGCT 59.607 43.478 8.13 0.00 38.78 5.19
4473 5612 0.620556 GGTCTTTGATCAGGCTGGGA 59.379 55.000 15.73 0.00 0.00 4.37
4486 5625 0.526211 GCTGGGATTTCCGTTTGGAC 59.474 55.000 0.00 0.00 46.45 4.02
4525 5664 2.757077 CCCAACCCACCTCCACTC 59.243 66.667 0.00 0.00 0.00 3.51
4539 5678 3.339141 CTCCACTCCTCCTTAGTTTTGC 58.661 50.000 0.00 0.00 0.00 3.68
4541 5680 2.076863 CACTCCTCCTTAGTTTTGCGG 58.923 52.381 0.00 0.00 0.00 5.69
4599 5738 1.639280 CAATTATTTGGTGCGCCCAC 58.361 50.000 15.15 3.12 45.19 4.61
4600 5739 0.172352 AATTATTTGGTGCGCCCACG 59.828 50.000 15.15 0.00 45.19 4.94
4640 5779 2.159028 GGCAAAACCAAACAGCCACTTA 60.159 45.455 0.00 0.00 44.59 2.24
4651 5790 4.373156 ACAGCCACTTAGTTCCTTCAAT 57.627 40.909 0.00 0.00 0.00 2.57
4653 5792 3.441572 CAGCCACTTAGTTCCTTCAATGG 59.558 47.826 0.00 0.00 0.00 3.16
4694 5833 7.083875 TCCATCATTTTTGTACGGAATTCTC 57.916 36.000 5.23 0.00 0.00 2.87
4703 5842 1.880941 ACGGAATTCTCTTAGGCCCT 58.119 50.000 0.00 0.00 0.00 5.19
4707 5846 4.202367 ACGGAATTCTCTTAGGCCCTATTG 60.202 45.833 0.00 0.00 0.00 1.90
4715 5854 0.846015 TAGGCCCTATTGCAGTGCAT 59.154 50.000 20.50 11.63 38.76 3.96
4722 5861 1.003116 CTATTGCAGTGCATCGGCTTC 60.003 52.381 20.50 0.00 38.76 3.86
4723 5862 0.961857 ATTGCAGTGCATCGGCTTCA 60.962 50.000 20.50 0.70 38.76 3.02
4724 5863 1.171549 TTGCAGTGCATCGGCTTCAA 61.172 50.000 20.50 0.00 38.76 2.69
4725 5864 0.961857 TGCAGTGCATCGGCTTCAAT 60.962 50.000 15.37 0.00 41.91 2.57
4726 5865 0.524816 GCAGTGCATCGGCTTCAATG 60.525 55.000 11.09 0.00 41.91 2.82
4727 5866 1.089112 CAGTGCATCGGCTTCAATGA 58.911 50.000 0.00 0.00 41.91 2.57
4728 5867 1.063616 CAGTGCATCGGCTTCAATGAG 59.936 52.381 0.00 0.00 41.91 2.90
4729 5868 0.379669 GTGCATCGGCTTCAATGAGG 59.620 55.000 0.00 0.00 41.91 3.86
4730 5869 0.252761 TGCATCGGCTTCAATGAGGA 59.747 50.000 0.00 0.00 41.91 3.71
4731 5870 0.942962 GCATCGGCTTCAATGAGGAG 59.057 55.000 0.00 0.00 36.96 3.69
4732 5871 1.590932 CATCGGCTTCAATGAGGAGG 58.409 55.000 0.00 0.00 0.00 4.30
4733 5872 0.471617 ATCGGCTTCAATGAGGAGGG 59.528 55.000 0.00 0.00 0.00 4.30
4734 5873 1.821332 CGGCTTCAATGAGGAGGGC 60.821 63.158 0.00 0.00 36.31 5.19
4735 5874 1.821332 GGCTTCAATGAGGAGGGCG 60.821 63.158 0.00 0.00 30.17 6.13
4736 5875 1.221840 GCTTCAATGAGGAGGGCGA 59.778 57.895 0.00 0.00 0.00 5.54
4737 5876 0.179034 GCTTCAATGAGGAGGGCGAT 60.179 55.000 0.00 0.00 0.00 4.58
4738 5877 1.590932 CTTCAATGAGGAGGGCGATG 58.409 55.000 0.00 0.00 0.00 3.84
4739 5878 1.139654 CTTCAATGAGGAGGGCGATGA 59.860 52.381 0.00 0.00 0.00 2.92
4740 5879 0.465705 TCAATGAGGAGGGCGATGAC 59.534 55.000 0.00 0.00 0.00 3.06
4741 5880 0.877649 CAATGAGGAGGGCGATGACG 60.878 60.000 0.00 0.00 42.93 4.35
4742 5881 2.032860 AATGAGGAGGGCGATGACGG 62.033 60.000 0.00 0.00 40.15 4.79
4765 5904 4.069232 CGCCTTCACCTCGCTCCA 62.069 66.667 0.00 0.00 0.00 3.86
4766 5905 2.347490 GCCTTCACCTCGCTCCAA 59.653 61.111 0.00 0.00 0.00 3.53
4767 5906 1.078143 GCCTTCACCTCGCTCCAAT 60.078 57.895 0.00 0.00 0.00 3.16
4768 5907 1.372087 GCCTTCACCTCGCTCCAATG 61.372 60.000 0.00 0.00 0.00 2.82
4769 5908 1.372087 CCTTCACCTCGCTCCAATGC 61.372 60.000 0.00 0.00 0.00 3.56
4770 5909 0.392193 CTTCACCTCGCTCCAATGCT 60.392 55.000 0.00 0.00 0.00 3.79
4771 5910 0.036732 TTCACCTCGCTCCAATGCTT 59.963 50.000 0.00 0.00 0.00 3.91
4772 5911 0.674581 TCACCTCGCTCCAATGCTTG 60.675 55.000 0.00 0.00 0.00 4.01
4773 5912 0.957395 CACCTCGCTCCAATGCTTGT 60.957 55.000 0.00 0.00 0.00 3.16
4774 5913 0.613260 ACCTCGCTCCAATGCTTGTA 59.387 50.000 0.00 0.00 0.00 2.41
4775 5914 1.293924 CCTCGCTCCAATGCTTGTAG 58.706 55.000 0.00 0.00 0.00 2.74
4776 5915 1.406069 CCTCGCTCCAATGCTTGTAGT 60.406 52.381 0.00 0.00 0.00 2.73
4777 5916 1.929836 CTCGCTCCAATGCTTGTAGTC 59.070 52.381 0.00 0.00 0.00 2.59
4778 5917 0.647410 CGCTCCAATGCTTGTAGTCG 59.353 55.000 0.00 0.00 0.00 4.18
4779 5918 1.726853 GCTCCAATGCTTGTAGTCGT 58.273 50.000 0.00 0.00 0.00 4.34
4780 5919 2.076863 GCTCCAATGCTTGTAGTCGTT 58.923 47.619 0.00 0.00 0.00 3.85
4781 5920 3.259064 GCTCCAATGCTTGTAGTCGTTA 58.741 45.455 0.00 0.00 0.00 3.18
4782 5921 3.871594 GCTCCAATGCTTGTAGTCGTTAT 59.128 43.478 0.00 0.00 0.00 1.89
4783 5922 4.332819 GCTCCAATGCTTGTAGTCGTTATT 59.667 41.667 0.00 0.00 0.00 1.40
4784 5923 5.522460 GCTCCAATGCTTGTAGTCGTTATTA 59.478 40.000 0.00 0.00 0.00 0.98
4785 5924 6.292381 GCTCCAATGCTTGTAGTCGTTATTAG 60.292 42.308 0.00 0.00 0.00 1.73
4786 5925 6.869695 TCCAATGCTTGTAGTCGTTATTAGA 58.130 36.000 0.00 0.00 0.00 2.10
4787 5926 7.497595 TCCAATGCTTGTAGTCGTTATTAGAT 58.502 34.615 0.00 0.00 0.00 1.98
4788 5927 7.438160 TCCAATGCTTGTAGTCGTTATTAGATG 59.562 37.037 0.00 0.00 0.00 2.90
4789 5928 7.307396 CCAATGCTTGTAGTCGTTATTAGATGG 60.307 40.741 0.00 0.00 0.00 3.51
4790 5929 6.216801 TGCTTGTAGTCGTTATTAGATGGT 57.783 37.500 0.00 0.00 0.00 3.55
4791 5930 6.270815 TGCTTGTAGTCGTTATTAGATGGTC 58.729 40.000 0.00 0.00 0.00 4.02
4792 5931 6.096423 TGCTTGTAGTCGTTATTAGATGGTCT 59.904 38.462 0.00 0.00 0.00 3.85
4793 5932 7.283807 TGCTTGTAGTCGTTATTAGATGGTCTA 59.716 37.037 0.00 0.00 0.00 2.59
4794 5933 7.590689 GCTTGTAGTCGTTATTAGATGGTCTAC 59.409 40.741 0.00 0.00 0.00 2.59
4795 5934 7.182361 TGTAGTCGTTATTAGATGGTCTACG 57.818 40.000 0.00 0.00 0.00 3.51
4796 5935 5.686159 AGTCGTTATTAGATGGTCTACGG 57.314 43.478 0.00 0.00 28.84 4.02
4797 5936 5.371526 AGTCGTTATTAGATGGTCTACGGA 58.628 41.667 0.00 0.00 28.84 4.69
4798 5937 5.238214 AGTCGTTATTAGATGGTCTACGGAC 59.762 44.000 0.00 0.00 41.43 4.79
4810 5949 4.667519 GTCTACGGACCTGGATGTAATT 57.332 45.455 0.00 0.00 36.53 1.40
4811 5950 5.019785 GTCTACGGACCTGGATGTAATTT 57.980 43.478 0.00 0.00 36.53 1.82
4812 5951 5.425630 GTCTACGGACCTGGATGTAATTTT 58.574 41.667 0.00 0.00 36.53 1.82
4813 5952 5.878669 GTCTACGGACCTGGATGTAATTTTT 59.121 40.000 0.00 0.00 36.53 1.94
4814 5953 7.043565 GTCTACGGACCTGGATGTAATTTTTA 58.956 38.462 0.00 0.00 36.53 1.52
4815 5954 7.010830 GTCTACGGACCTGGATGTAATTTTTAC 59.989 40.741 0.00 0.00 36.53 2.01
4816 5955 5.812286 ACGGACCTGGATGTAATTTTTACT 58.188 37.500 0.00 0.00 0.00 2.24
4817 5956 6.243148 ACGGACCTGGATGTAATTTTTACTT 58.757 36.000 0.00 0.00 0.00 2.24
4818 5957 6.373495 ACGGACCTGGATGTAATTTTTACTTC 59.627 38.462 0.00 5.27 0.00 3.01
4819 5958 6.598064 CGGACCTGGATGTAATTTTTACTTCT 59.402 38.462 0.00 0.00 0.00 2.85
4820 5959 7.414098 CGGACCTGGATGTAATTTTTACTTCTG 60.414 40.741 0.00 6.58 0.00 3.02
4821 5960 7.148069 GGACCTGGATGTAATTTTTACTTCTGG 60.148 40.741 0.00 13.51 0.00 3.86
4822 5961 7.238710 ACCTGGATGTAATTTTTACTTCTGGT 58.761 34.615 0.00 16.11 0.00 4.00
4823 5962 7.176690 ACCTGGATGTAATTTTTACTTCTGGTG 59.823 37.037 18.43 8.85 32.98 4.17
4824 5963 7.176690 CCTGGATGTAATTTTTACTTCTGGTGT 59.823 37.037 10.99 0.00 0.00 4.16
4825 5964 8.472007 TGGATGTAATTTTTACTTCTGGTGTT 57.528 30.769 10.99 0.00 0.00 3.32
4826 5965 8.573035 TGGATGTAATTTTTACTTCTGGTGTTC 58.427 33.333 10.99 0.00 0.00 3.18
4827 5966 8.793592 GGATGTAATTTTTACTTCTGGTGTTCT 58.206 33.333 10.99 0.00 0.00 3.01
4830 5969 9.796120 TGTAATTTTTACTTCTGGTGTTCTTTG 57.204 29.630 0.00 0.00 0.00 2.77
4831 5970 9.797556 GTAATTTTTACTTCTGGTGTTCTTTGT 57.202 29.630 0.00 0.00 0.00 2.83
4833 5972 9.797556 AATTTTTACTTCTGGTGTTCTTTGTAC 57.202 29.630 0.00 0.00 0.00 2.90
4834 5973 8.570068 TTTTTACTTCTGGTGTTCTTTGTACT 57.430 30.769 0.00 0.00 0.00 2.73
4835 5974 9.669887 TTTTTACTTCTGGTGTTCTTTGTACTA 57.330 29.630 0.00 0.00 0.00 1.82
4836 5975 8.652810 TTTACTTCTGGTGTTCTTTGTACTAC 57.347 34.615 0.00 0.00 0.00 2.73
4837 5976 5.608449 ACTTCTGGTGTTCTTTGTACTACC 58.392 41.667 0.00 0.00 0.00 3.18
4838 5977 5.129815 ACTTCTGGTGTTCTTTGTACTACCA 59.870 40.000 0.00 0.00 36.79 3.25
4839 5978 5.818678 TCTGGTGTTCTTTGTACTACCAT 57.181 39.130 0.00 0.00 37.55 3.55
4840 5979 5.547465 TCTGGTGTTCTTTGTACTACCATG 58.453 41.667 0.00 0.00 37.55 3.66
4841 5980 5.305902 TCTGGTGTTCTTTGTACTACCATGA 59.694 40.000 0.00 0.00 37.55 3.07
4842 5981 5.302360 TGGTGTTCTTTGTACTACCATGAC 58.698 41.667 0.00 0.00 33.60 3.06
4843 5982 5.163290 TGGTGTTCTTTGTACTACCATGACA 60.163 40.000 0.00 0.00 33.60 3.58
4844 5983 5.408604 GGTGTTCTTTGTACTACCATGACAG 59.591 44.000 0.00 0.00 0.00 3.51
4845 5984 5.989777 GTGTTCTTTGTACTACCATGACAGT 59.010 40.000 0.00 0.00 0.00 3.55
4846 5985 6.482308 GTGTTCTTTGTACTACCATGACAGTT 59.518 38.462 0.00 0.00 0.00 3.16
4847 5986 6.481976 TGTTCTTTGTACTACCATGACAGTTG 59.518 38.462 0.00 0.00 0.00 3.16
4848 5987 6.413783 TCTTTGTACTACCATGACAGTTGA 57.586 37.500 0.00 0.00 0.00 3.18
4849 5988 7.004555 TCTTTGTACTACCATGACAGTTGAT 57.995 36.000 0.00 0.00 0.00 2.57
4850 5989 6.873605 TCTTTGTACTACCATGACAGTTGATG 59.126 38.462 0.00 0.00 0.00 3.07
4851 5990 5.993748 TGTACTACCATGACAGTTGATGA 57.006 39.130 0.00 0.00 0.00 2.92
4852 5991 6.353404 TGTACTACCATGACAGTTGATGAA 57.647 37.500 0.00 0.00 0.00 2.57
4853 5992 6.946340 TGTACTACCATGACAGTTGATGAAT 58.054 36.000 0.00 0.00 0.00 2.57
4854 5993 8.073467 TGTACTACCATGACAGTTGATGAATA 57.927 34.615 0.00 0.00 0.00 1.75
4855 5994 8.197439 TGTACTACCATGACAGTTGATGAATAG 58.803 37.037 0.00 0.00 0.00 1.73
4856 5995 7.423844 ACTACCATGACAGTTGATGAATAGA 57.576 36.000 0.00 0.00 0.00 1.98
4857 5996 8.027524 ACTACCATGACAGTTGATGAATAGAT 57.972 34.615 0.00 0.00 0.00 1.98
4858 5997 8.147058 ACTACCATGACAGTTGATGAATAGATC 58.853 37.037 0.00 0.00 0.00 2.75
4859 5998 5.987953 ACCATGACAGTTGATGAATAGATCG 59.012 40.000 0.00 0.00 0.00 3.69
4860 5999 5.407691 CCATGACAGTTGATGAATAGATCGG 59.592 44.000 0.00 0.00 0.00 4.18
4861 6000 5.852282 TGACAGTTGATGAATAGATCGGA 57.148 39.130 0.00 0.00 0.00 4.55
4862 6001 6.220726 TGACAGTTGATGAATAGATCGGAA 57.779 37.500 0.00 0.00 0.00 4.30
4863 6002 6.276091 TGACAGTTGATGAATAGATCGGAAG 58.724 40.000 0.00 0.00 0.00 3.46
4864 6003 6.127338 TGACAGTTGATGAATAGATCGGAAGT 60.127 38.462 0.00 0.00 0.00 3.01
4865 6004 6.644347 ACAGTTGATGAATAGATCGGAAGTT 58.356 36.000 0.00 0.00 0.00 2.66
4866 6005 7.106239 ACAGTTGATGAATAGATCGGAAGTTT 58.894 34.615 0.00 0.00 0.00 2.66
4867 6006 7.607991 ACAGTTGATGAATAGATCGGAAGTTTT 59.392 33.333 0.00 0.00 0.00 2.43
4868 6007 8.119226 CAGTTGATGAATAGATCGGAAGTTTTC 58.881 37.037 0.00 0.00 0.00 2.29
4869 6008 8.043710 AGTTGATGAATAGATCGGAAGTTTTCT 58.956 33.333 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 43 3.788766 GATCCACGCGTGCGCTTT 61.789 61.111 33.17 14.75 44.19 3.51
62 68 6.491745 TCGCTAGAATCCTTAATGAGATCAGT 59.508 38.462 0.00 0.00 0.00 3.41
74 80 1.474143 GCTTGGCTCGCTAGAATCCTT 60.474 52.381 0.00 0.00 0.00 3.36
137 143 5.587043 TGCCACCGTCTTACATAATTTAAGG 59.413 40.000 0.00 0.00 0.00 2.69
144 150 4.396790 GGATTTTGCCACCGTCTTACATAA 59.603 41.667 0.00 0.00 0.00 1.90
157 163 4.164988 TCTTTGGAAAAAGGGATTTTGCCA 59.835 37.500 8.76 8.76 45.66 4.92
266 279 8.079203 TCAACGCATACTACAAATGTTCATTTT 58.921 29.630 7.88 4.03 0.00 1.82
751 1034 0.522705 TAGCGTCAGATCGTCGTTGC 60.523 55.000 8.44 0.75 0.00 4.17
754 1037 0.247576 CGTTAGCGTCAGATCGTCGT 60.248 55.000 8.44 0.00 0.00 4.34
755 1038 0.025898 TCGTTAGCGTCAGATCGTCG 59.974 55.000 0.00 3.61 39.49 5.12
756 1039 1.732528 CTCGTTAGCGTCAGATCGTC 58.267 55.000 0.00 0.00 39.49 4.20
825 1109 1.444933 ATCCTTTGTGGGTGGACTGA 58.555 50.000 0.00 0.00 36.20 3.41
826 1110 3.652057 ATATCCTTTGTGGGTGGACTG 57.348 47.619 0.00 0.00 36.20 3.51
893 1177 6.411376 TGGAAAAGCGAGTAAGGAATCAATA 58.589 36.000 0.00 0.00 0.00 1.90
990 1365 2.851102 ATCGCCATGGGAGGGAGG 60.851 66.667 15.13 0.00 0.00 4.30
991 1366 2.746359 GATCGCCATGGGAGGGAG 59.254 66.667 15.13 0.00 0.00 4.30
992 1367 2.849162 GGATCGCCATGGGAGGGA 60.849 66.667 15.13 1.45 0.00 4.20
1336 2445 3.773974 GCAGGAAGCGACGAGAAG 58.226 61.111 0.00 0.00 0.00 2.85
1466 2575 0.960364 TCGCACCAATTTGCCTCCTC 60.960 55.000 0.00 0.00 39.53 3.71
1484 2593 2.819608 ACCCACATTACACACAGCATTC 59.180 45.455 0.00 0.00 0.00 2.67
1513 2622 4.822896 TCATTGCACATTAGCATATCAGCA 59.177 37.500 0.00 0.00 45.19 4.41
1514 2623 5.152097 GTCATTGCACATTAGCATATCAGC 58.848 41.667 0.00 0.00 45.19 4.26
1516 2625 5.824097 AGTGTCATTGCACATTAGCATATCA 59.176 36.000 11.85 0.00 45.19 2.15
1680 2789 5.163683 CCCAATTTGACAAAACAATGCAACA 60.164 36.000 4.41 0.00 0.00 3.33
1681 2790 5.163673 ACCCAATTTGACAAAACAATGCAAC 60.164 36.000 4.41 0.00 0.00 4.17
1682 2791 4.946157 ACCCAATTTGACAAAACAATGCAA 59.054 33.333 4.41 0.00 0.00 4.08
1683 2792 4.521146 ACCCAATTTGACAAAACAATGCA 58.479 34.783 4.41 0.00 0.00 3.96
1684 2793 5.272397 CAACCCAATTTGACAAAACAATGC 58.728 37.500 4.41 0.00 0.00 3.56
1685 2794 5.587844 TCCAACCCAATTTGACAAAACAATG 59.412 36.000 4.41 2.63 0.00 2.82
1686 2795 5.749462 TCCAACCCAATTTGACAAAACAAT 58.251 33.333 4.41 0.00 0.00 2.71
1687 2796 5.165961 TCCAACCCAATTTGACAAAACAA 57.834 34.783 4.41 0.00 0.00 2.83
1703 2820 6.029346 ACATCACAGATTCAATTTCCAACC 57.971 37.500 0.00 0.00 0.00 3.77
1808 2925 0.374758 CATGAACGCGGATTGTCCAG 59.625 55.000 12.47 0.00 35.91 3.86
1858 2975 1.728672 CGCTACGTCTCCTTCTCCC 59.271 63.158 0.00 0.00 0.00 4.30
1897 3014 7.872113 AAGTGGATTATCTTTGAGTTCATCC 57.128 36.000 0.00 0.00 0.00 3.51
1975 3092 1.067295 AGACCCTGATGGAGTTGCAA 58.933 50.000 0.00 0.00 38.00 4.08
2407 3525 5.939296 GCATCAAATTTCAAGGATTTTGGGA 59.061 36.000 0.00 0.00 0.00 4.37
2429 3547 7.041721 CACATGGTTACTCTCATAACTAAGCA 58.958 38.462 0.00 0.00 35.70 3.91
2467 3586 2.623418 TCCAGAGCTTCTAAGTGGGA 57.377 50.000 0.00 0.00 0.00 4.37
2468 3587 3.922171 AATCCAGAGCTTCTAAGTGGG 57.078 47.619 0.00 0.00 0.00 4.61
2469 3588 4.195416 GGAAATCCAGAGCTTCTAAGTGG 58.805 47.826 0.00 0.00 35.64 4.00
2470 3589 4.836825 TGGAAATCCAGAGCTTCTAAGTG 58.163 43.478 0.00 0.00 42.01 3.16
2555 3682 1.123861 ACTGCTCCCTGCTGAGACAA 61.124 55.000 3.16 0.00 42.27 3.18
2594 3721 7.905604 TTATTCACCAATCACTAGTGAGTTG 57.094 36.000 28.29 26.56 43.61 3.16
2674 3801 4.667573 TGAAGCTCTAGAGGACTGAGAAA 58.332 43.478 21.23 0.00 0.00 2.52
2705 3832 9.045745 ACCACACCATATTCCAAGAAATAAATT 57.954 29.630 0.00 0.00 0.00 1.82
2744 3871 3.646162 TGAAGAGAAAGTAGGGACTGCAA 59.354 43.478 0.00 0.00 45.83 4.08
3129 4259 5.310409 TCTTCTTTTGATGAACTCAGGGT 57.690 39.130 0.00 0.00 34.68 4.34
3440 4570 6.479331 GGCAGATTACTTAAAGTACTACAGCC 59.521 42.308 0.00 0.00 28.93 4.85
3525 4659 4.761227 TGCCGTAATGATCATGTGCATAAT 59.239 37.500 9.46 0.00 0.00 1.28
3526 4660 4.133078 TGCCGTAATGATCATGTGCATAA 58.867 39.130 9.46 0.00 0.00 1.90
3527 4661 3.737850 TGCCGTAATGATCATGTGCATA 58.262 40.909 9.46 0.00 0.00 3.14
3545 4679 4.947388 TGGTCAAGTTCCATAGTTAATGCC 59.053 41.667 0.00 0.00 33.92 4.40
3693 4827 4.009675 TCGATTATTGGCTCCAATATGCC 58.990 43.478 18.87 11.49 44.99 4.40
3794 4928 2.368221 GCAGAGGGCAAGATCACTATCT 59.632 50.000 0.00 0.00 44.67 1.98
3908 5042 1.630369 TGGTAAGCAGAGCAGGTCATT 59.370 47.619 1.66 0.00 0.00 2.57
3946 5080 2.919666 ACATTTTGCCGTGTCTATGC 57.080 45.000 0.00 0.00 0.00 3.14
4062 5198 4.721132 AGAAAATAACAAGGTCCACCGAA 58.279 39.130 0.00 0.00 42.08 4.30
4065 5201 6.040504 ACAAAGAGAAAATAACAAGGTCCACC 59.959 38.462 0.00 0.00 0.00 4.61
4110 5246 8.121708 TGTACAACACCAAAAATAAGTCGTAAC 58.878 33.333 0.00 0.00 0.00 2.50
4135 5271 1.284657 CAGCGGCTCTTACATCAGTG 58.715 55.000 0.00 0.00 0.00 3.66
4161 5297 8.324163 AGTGTACTATTTGTTTTCTTAGCTGG 57.676 34.615 0.00 0.00 0.00 4.85
4178 5314 9.676861 AGTGTAGTTGTATGATGTAGTGTACTA 57.323 33.333 0.00 0.00 0.00 1.82
4179 5315 8.577048 AGTGTAGTTGTATGATGTAGTGTACT 57.423 34.615 0.00 0.00 0.00 2.73
4180 5316 9.635520 AAAGTGTAGTTGTATGATGTAGTGTAC 57.364 33.333 0.00 0.00 0.00 2.90
4277 5413 6.881602 GGAAAGAGGGAGCAATATAATACCAG 59.118 42.308 0.00 0.00 0.00 4.00
4309 5445 4.933400 GTGAAAAAGGCAAATGCATCTCAT 59.067 37.500 0.00 0.00 44.36 2.90
4380 5516 6.831868 TCCAAACAGCCCCTAACTATTTTATC 59.168 38.462 0.00 0.00 0.00 1.75
4398 5534 2.517959 CTGAAGGCTCCAATCCAAACA 58.482 47.619 0.00 0.00 0.00 2.83
4456 5595 3.624777 GAAATCCCAGCCTGATCAAAGA 58.375 45.455 0.00 0.00 0.00 2.52
4458 5597 2.738743 GGAAATCCCAGCCTGATCAAA 58.261 47.619 0.00 0.00 34.14 2.69
4512 5651 2.049792 AAGGAGGAGTGGAGGTGGGT 62.050 60.000 0.00 0.00 0.00 4.51
4521 5660 2.076863 CCGCAAAACTAAGGAGGAGTG 58.923 52.381 0.00 0.00 0.00 3.51
4523 5662 1.087501 GCCGCAAAACTAAGGAGGAG 58.912 55.000 0.00 0.00 0.00 3.69
4525 5664 1.243902 TTGCCGCAAAACTAAGGAGG 58.756 50.000 2.50 0.00 0.00 4.30
4539 5678 4.434067 CGAAAATTTGCCAACTATTTGCCG 60.434 41.667 0.00 0.00 0.00 5.69
4541 5680 5.608146 GTCGAAAATTTGCCAACTATTTGC 58.392 37.500 0.00 0.00 0.00 3.68
4605 5744 0.183492 TTTGCCTATGCTAGCCCCAG 59.817 55.000 13.29 6.31 38.71 4.45
4617 5756 1.410882 GTGGCTGTTTGGTTTTGCCTA 59.589 47.619 0.00 0.00 43.57 3.93
4636 5775 8.753497 GGATTTATCCATTGAAGGAACTAAGT 57.247 34.615 3.87 0.00 46.38 2.24
4662 5801 7.990314 TCCGTACAAAAATGATGGATTCTATCA 59.010 33.333 14.19 14.19 38.76 2.15
4680 5819 3.118519 GGGCCTAAGAGAATTCCGTACAA 60.119 47.826 0.84 0.00 0.00 2.41
4681 5820 2.433239 GGGCCTAAGAGAATTCCGTACA 59.567 50.000 0.84 0.00 0.00 2.90
4703 5842 1.016627 GAAGCCGATGCACTGCAATA 58.983 50.000 8.03 0.00 43.62 1.90
4707 5846 0.524816 CATTGAAGCCGATGCACTGC 60.525 55.000 0.00 0.00 41.13 4.40
4715 5854 1.907739 CCCTCCTCATTGAAGCCGA 59.092 57.895 0.00 0.00 0.00 5.54
4722 5861 0.877649 CGTCATCGCCCTCCTCATTG 60.878 60.000 0.00 0.00 0.00 2.82
4723 5862 1.443407 CGTCATCGCCCTCCTCATT 59.557 57.895 0.00 0.00 0.00 2.57
4724 5863 2.502492 CCGTCATCGCCCTCCTCAT 61.502 63.158 0.00 0.00 35.54 2.90
4725 5864 3.147595 CCGTCATCGCCCTCCTCA 61.148 66.667 0.00 0.00 35.54 3.86
4726 5865 4.593864 GCCGTCATCGCCCTCCTC 62.594 72.222 0.00 0.00 35.54 3.71
4748 5887 2.859273 ATTGGAGCGAGGTGAAGGCG 62.859 60.000 0.00 0.00 0.00 5.52
4749 5888 1.078143 ATTGGAGCGAGGTGAAGGC 60.078 57.895 0.00 0.00 0.00 4.35
4750 5889 1.372087 GCATTGGAGCGAGGTGAAGG 61.372 60.000 0.00 0.00 0.00 3.46
4751 5890 0.392193 AGCATTGGAGCGAGGTGAAG 60.392 55.000 0.00 0.00 40.15 3.02
4752 5891 0.036732 AAGCATTGGAGCGAGGTGAA 59.963 50.000 0.00 0.00 40.15 3.18
4753 5892 0.674581 CAAGCATTGGAGCGAGGTGA 60.675 55.000 0.00 0.00 43.94 4.02
4754 5893 1.798735 CAAGCATTGGAGCGAGGTG 59.201 57.895 0.00 0.00 43.94 4.00
4755 5894 4.308526 CAAGCATTGGAGCGAGGT 57.691 55.556 0.00 0.00 43.94 3.85
4765 5904 7.272978 ACCATCTAATAACGACTACAAGCATT 58.727 34.615 0.00 0.00 0.00 3.56
4766 5905 6.817184 ACCATCTAATAACGACTACAAGCAT 58.183 36.000 0.00 0.00 0.00 3.79
4767 5906 6.096423 AGACCATCTAATAACGACTACAAGCA 59.904 38.462 0.00 0.00 0.00 3.91
4768 5907 6.505272 AGACCATCTAATAACGACTACAAGC 58.495 40.000 0.00 0.00 0.00 4.01
4769 5908 7.797587 CGTAGACCATCTAATAACGACTACAAG 59.202 40.741 0.00 0.00 29.07 3.16
4770 5909 7.254898 CCGTAGACCATCTAATAACGACTACAA 60.255 40.741 0.00 0.00 29.07 2.41
4771 5910 6.203530 CCGTAGACCATCTAATAACGACTACA 59.796 42.308 0.00 0.00 29.07 2.74
4772 5911 6.425114 TCCGTAGACCATCTAATAACGACTAC 59.575 42.308 0.00 0.00 29.07 2.73
4773 5912 6.425114 GTCCGTAGACCATCTAATAACGACTA 59.575 42.308 0.00 0.00 37.00 2.59
4774 5913 5.238214 GTCCGTAGACCATCTAATAACGACT 59.762 44.000 0.00 0.00 37.00 4.18
4775 5914 5.447573 GTCCGTAGACCATCTAATAACGAC 58.552 45.833 0.00 0.00 37.00 4.34
4776 5915 5.679734 GTCCGTAGACCATCTAATAACGA 57.320 43.478 0.00 0.00 37.00 3.85
4789 5928 4.667519 AATTACATCCAGGTCCGTAGAC 57.332 45.455 0.00 0.00 42.73 2.59
4790 5929 5.687166 AAAATTACATCCAGGTCCGTAGA 57.313 39.130 0.00 0.00 0.00 2.59
4791 5930 7.046033 AGTAAAAATTACATCCAGGTCCGTAG 58.954 38.462 3.37 0.00 0.00 3.51
4792 5931 6.949715 AGTAAAAATTACATCCAGGTCCGTA 58.050 36.000 3.37 0.00 0.00 4.02
4793 5932 5.812286 AGTAAAAATTACATCCAGGTCCGT 58.188 37.500 3.37 0.00 0.00 4.69
4794 5933 6.598064 AGAAGTAAAAATTACATCCAGGTCCG 59.402 38.462 3.37 0.00 0.00 4.79
4795 5934 7.148069 CCAGAAGTAAAAATTACATCCAGGTCC 60.148 40.741 3.37 0.00 0.00 4.46
4796 5935 7.393515 ACCAGAAGTAAAAATTACATCCAGGTC 59.606 37.037 11.31 0.00 0.00 3.85
4797 5936 7.176690 CACCAGAAGTAAAAATTACATCCAGGT 59.823 37.037 11.31 11.31 29.93 4.00
4798 5937 7.176690 ACACCAGAAGTAAAAATTACATCCAGG 59.823 37.037 10.47 10.47 0.00 4.45
4799 5938 8.110860 ACACCAGAAGTAAAAATTACATCCAG 57.889 34.615 3.37 0.00 0.00 3.86
4800 5939 8.472007 AACACCAGAAGTAAAAATTACATCCA 57.528 30.769 3.37 0.00 0.00 3.41
4801 5940 8.793592 AGAACACCAGAAGTAAAAATTACATCC 58.206 33.333 3.37 0.00 0.00 3.51
4804 5943 9.796120 CAAAGAACACCAGAAGTAAAAATTACA 57.204 29.630 3.37 0.00 0.00 2.41
4805 5944 9.797556 ACAAAGAACACCAGAAGTAAAAATTAC 57.202 29.630 0.00 0.00 0.00 1.89
4807 5946 9.797556 GTACAAAGAACACCAGAAGTAAAAATT 57.202 29.630 0.00 0.00 0.00 1.82
4808 5947 9.185680 AGTACAAAGAACACCAGAAGTAAAAAT 57.814 29.630 0.00 0.00 0.00 1.82
4809 5948 8.570068 AGTACAAAGAACACCAGAAGTAAAAA 57.430 30.769 0.00 0.00 0.00 1.94
4810 5949 9.101655 GTAGTACAAAGAACACCAGAAGTAAAA 57.898 33.333 0.00 0.00 0.00 1.52
4811 5950 7.712205 GGTAGTACAAAGAACACCAGAAGTAAA 59.288 37.037 2.06 0.00 0.00 2.01
4812 5951 7.147689 TGGTAGTACAAAGAACACCAGAAGTAA 60.148 37.037 2.06 0.00 32.47 2.24
4813 5952 6.324512 TGGTAGTACAAAGAACACCAGAAGTA 59.675 38.462 2.06 0.00 32.47 2.24
4814 5953 5.129815 TGGTAGTACAAAGAACACCAGAAGT 59.870 40.000 2.06 0.00 32.47 3.01
4815 5954 5.607477 TGGTAGTACAAAGAACACCAGAAG 58.393 41.667 2.06 0.00 32.47 2.85
4816 5955 5.617528 TGGTAGTACAAAGAACACCAGAA 57.382 39.130 2.06 0.00 32.47 3.02
4817 5956 5.305902 TCATGGTAGTACAAAGAACACCAGA 59.694 40.000 2.06 0.00 39.29 3.86
4818 5957 5.408604 GTCATGGTAGTACAAAGAACACCAG 59.591 44.000 2.06 0.00 39.29 4.00
4819 5958 5.163290 TGTCATGGTAGTACAAAGAACACCA 60.163 40.000 2.06 0.00 40.15 4.17
4820 5959 5.302360 TGTCATGGTAGTACAAAGAACACC 58.698 41.667 2.06 0.00 0.00 4.16
4821 5960 5.989777 ACTGTCATGGTAGTACAAAGAACAC 59.010 40.000 2.06 0.00 0.00 3.32
4822 5961 6.169557 ACTGTCATGGTAGTACAAAGAACA 57.830 37.500 2.06 0.00 0.00 3.18
4823 5962 6.704493 TCAACTGTCATGGTAGTACAAAGAAC 59.296 38.462 2.06 0.00 0.00 3.01
4824 5963 6.822442 TCAACTGTCATGGTAGTACAAAGAA 58.178 36.000 2.06 0.00 0.00 2.52
4825 5964 6.413783 TCAACTGTCATGGTAGTACAAAGA 57.586 37.500 2.06 0.00 0.00 2.52
4826 5965 6.873605 TCATCAACTGTCATGGTAGTACAAAG 59.126 38.462 2.06 0.00 0.00 2.77
4827 5966 6.764379 TCATCAACTGTCATGGTAGTACAAA 58.236 36.000 2.06 0.00 0.00 2.83
4828 5967 6.353404 TCATCAACTGTCATGGTAGTACAA 57.647 37.500 2.06 0.00 0.00 2.41
4829 5968 5.993748 TCATCAACTGTCATGGTAGTACA 57.006 39.130 2.06 0.00 0.00 2.90
4830 5969 8.414003 TCTATTCATCAACTGTCATGGTAGTAC 58.586 37.037 0.00 0.00 0.00 2.73
4831 5970 8.533569 TCTATTCATCAACTGTCATGGTAGTA 57.466 34.615 0.00 0.00 0.00 1.82
4832 5971 7.423844 TCTATTCATCAACTGTCATGGTAGT 57.576 36.000 0.00 0.00 0.00 2.73
4833 5972 7.328005 CGATCTATTCATCAACTGTCATGGTAG 59.672 40.741 0.00 0.00 0.00 3.18
4834 5973 7.147976 CGATCTATTCATCAACTGTCATGGTA 58.852 38.462 0.00 0.00 0.00 3.25
4835 5974 5.987953 CGATCTATTCATCAACTGTCATGGT 59.012 40.000 0.00 0.00 0.00 3.55
4836 5975 5.407691 CCGATCTATTCATCAACTGTCATGG 59.592 44.000 0.00 0.00 0.00 3.66
4837 5976 6.218746 TCCGATCTATTCATCAACTGTCATG 58.781 40.000 0.00 0.00 0.00 3.07
4838 5977 6.410942 TCCGATCTATTCATCAACTGTCAT 57.589 37.500 0.00 0.00 0.00 3.06
4839 5978 5.852282 TCCGATCTATTCATCAACTGTCA 57.148 39.130 0.00 0.00 0.00 3.58
4840 5979 6.276847 ACTTCCGATCTATTCATCAACTGTC 58.723 40.000 0.00 0.00 0.00 3.51
4841 5980 6.227298 ACTTCCGATCTATTCATCAACTGT 57.773 37.500 0.00 0.00 0.00 3.55
4842 5981 7.545362 AAACTTCCGATCTATTCATCAACTG 57.455 36.000 0.00 0.00 0.00 3.16
4843 5982 8.043710 AGAAAACTTCCGATCTATTCATCAACT 58.956 33.333 0.00 0.00 0.00 3.16
4844 5983 8.202745 AGAAAACTTCCGATCTATTCATCAAC 57.797 34.615 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.