AutoCloner

Multiple sequence alignment - TraesCS2D01G151000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2D01G151000	chr2D	100.000	2661	0	0	1	2661	93809261	93811921	0.000000e+00	4915
1	TraesCS2D01G151000	chr4D	98.198	2663	36	8	1	2661	134537718	134540370	0.000000e+00	4641
2	TraesCS2D01G151000	chr4D	92.142	1209	63	6	200	1401	450715308	450716491	0.000000e+00	1677
3	TraesCS2D01G151000	chr4D	95.855	772	24	6	1894	2661	450717100	450717867	0.000000e+00	1242
4	TraesCS2D01G151000	chr4D	95.745	470	19	1	1426	1894	450716702	450717171	0.000000e+00	756
5	TraesCS2D01G151000	chr4D	96.020	201	6	2	1	200	450715057	450715256	2.550000e-85	326
6	TraesCS2D01G151000	chr7D	98.047	2663	38	9	1	2661	463876300	463873650	0.000000e+00	4617
7	TraesCS2D01G151000	chr7D	96.368	771	22	5	1894	2661	548210639	548211406	0.000000e+00	1264
8	TraesCS2D01G151000	chr7D	95.127	472	20	1	1426	1894	548210239	548210710	0.000000e+00	741
9	TraesCS2D01G151000	chr7D	94.324	370	17	2	200	569	548209300	548209665	4.970000e-157	564
10	TraesCS2D01G151000	chr7D	96.500	200	7	0	1	200	548209049	548209248	5.490000e-87	331
11	TraesCS2D01G151000	chrUn	97.861	1356	19	5	185	1540	409274258	409275603	0.000000e+00	2335
12	TraesCS2D01G151000	chr4A	93.932	1203	67	4	200	1401	343934074	343935271	0.000000e+00	1812
13	TraesCS2D01G151000	chr4A	97.000	200	6	0	1	200	343933823	343934022	1.180000e-88	337
14	TraesCS2D01G151000	chr3B	92.556	1209	67	9	200	1401	782650276	782649084	0.000000e+00	1712
15	TraesCS2D01G151000	chr3B	95.602	773	26	5	1894	2661	782648475	782647706	0.000000e+00	1232
16	TraesCS2D01G151000	chr3B	93.177	469	31	1	1426	1893	782648873	782648405	0.000000e+00	688
17	TraesCS2D01G151000	chr3B	87.179	468	56	4	936	1402	763474913	763474449	1.810000e-146	529
18	TraesCS2D01G151000	chr1A	90.349	1202	84	12	200	1401	55132719	55133888	0.000000e+00	1548
19	TraesCS2D01G151000	chr3D	96.494	770	22	4	1894	2661	28481021	28481787	0.000000e+00	1267
20	TraesCS2D01G151000	chr3D	96.364	770	22	5	1894	2661	40716552	40715787	0.000000e+00	1262
21	TraesCS2D01G151000	chr3D	95.551	472	18	1	1426	1894	28480621	28481092	0.000000e+00	752
22	TraesCS2D01G151000	chr3D	94.926	473	20	1	1426	1894	40716953	40716481	0.000000e+00	737
23	TraesCS2D01G151000	chr3D	94.595	370	16	2	200	569	28479682	28480047	1.070000e-158	569
24	TraesCS2D01G151000	chr3D	94.102	373	18	2	200	572	40717892	40717524	4.970000e-157	564
25	TraesCS2D01G151000	chr3D	96.500	200	7	0	1	200	40718143	40717944	5.490000e-87	331
26	TraesCS2D01G151000	chr3D	96.000	200	8	0	1	200	28479431	28479630	2.550000e-85	326
27	TraesCS2D01G151000	chr6D	96.364	770	23	4	1894	2661	24032808	24033574	0.000000e+00	1262
28	TraesCS2D01G151000	chr6D	96.234	770	24	4	1894	2661	246206693	246205927	0.000000e+00	1256
29	TraesCS2D01G151000	chr6D	95.339	472	19	1	1426	1894	24032408	24032879	0.000000e+00	747
30	TraesCS2D01G151000	chr6D	95.127	472	20	1	1426	1894	246207093	246206622	0.000000e+00	741
31	TraesCS2D01G151000	chr6D	94.324	370	17	2	200	569	24031469	24031834	4.970000e-157	564
32	TraesCS2D01G151000	chr6D	96.500	200	7	0	1	200	246208283	246208084	5.490000e-87	331
33	TraesCS2D01G151000	chr6D	96.000	200	8	0	1	200	24031218	24031417	2.550000e-85	326
34	TraesCS2D01G151000	chr2A	87.064	889	86	12	535	1401	135276925	135277806	0.000000e+00	977
35	TraesCS2D01G151000	chr1D	88.434	562	43	10	817	1367	217972002	217972552	0.000000e+00	658
36	TraesCS2D01G151000	chr1D	86.864	472	43	14	936	1402	156284736	156285193	6.570000e-141	510
37	TraesCS2D01G151000	chr1B	87.891	512	50	5	817	1327	311671911	311672411	2.280000e-165	592

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2D01G151000	chr2D	93809261	93811921	2660	False	4915.000000	4915	100.000000	1	2661	1	chr2D.!!$F1	2660
1	TraesCS2D01G151000	chr4D	134537718	134540370	2652	False	4641.000000	4641	98.198000	1	2661	1	chr4D.!!$F1	2660
2	TraesCS2D01G151000	chr4D	450715057	450717867	2810	False	1000.250000	1677	94.940500	1	2661	4	chr4D.!!$F2	2660
3	TraesCS2D01G151000	chr7D	463873650	463876300	2650	True	4617.000000	4617	98.047000	1	2661	1	chr7D.!!$R1	2660
4	TraesCS2D01G151000	chr7D	548209049	548211406	2357	False	725.000000	1264	95.579750	1	2661	4	chr7D.!!$F1	2660
5	TraesCS2D01G151000	chrUn	409274258	409275603	1345	False	2335.000000	2335	97.861000	185	1540	1	chrUn.!!$F1	1355
6	TraesCS2D01G151000	chr4A	343933823	343935271	1448	False	1074.500000	1812	95.466000	1	1401	2	chr4A.!!$F1	1400
7	TraesCS2D01G151000	chr3B	782647706	782650276	2570	True	1210.666667	1712	93.778333	200	2661	3	chr3B.!!$R2	2461
8	TraesCS2D01G151000	chr1A	55132719	55133888	1169	False	1548.000000	1548	90.349000	200	1401	1	chr1A.!!$F1	1201
9	TraesCS2D01G151000	chr3D	28479431	28481787	2356	False	728.500000	1267	95.660000	1	2661	4	chr3D.!!$F1	2660
10	TraesCS2D01G151000	chr3D	40715787	40718143	2356	True	723.500000	1262	95.473000	1	2661	4	chr3D.!!$R1	2660
11	TraesCS2D01G151000	chr6D	246205927	246208283	2356	True	776.000000	1256	95.953667	1	2661	3	chr6D.!!$R1	2660
12	TraesCS2D01G151000	chr6D	24031218	24033574	2356	False	724.750000	1262	95.506750	1	2661	4	chr6D.!!$F1	2660
13	TraesCS2D01G151000	chr2A	135276925	135277806	881	False	977.000000	977	87.064000	535	1401	1	chr2A.!!$F1	866
14	TraesCS2D01G151000	chr1D	217972002	217972552	550	False	658.000000	658	88.434000	817	1367	1	chr1D.!!$F2	550
15	TraesCS2D01G151000	chr1B	311671911	311672411	500	False	592.000000	592	87.891000	817	1327	1	chr1B.!!$F1	510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
678	739	0.178926	TCTTCCTACACCCAACCGGA	60.179	55.0	9.46	0.0	34.64	5.14	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1923	2273	1.725803	ACGGAACTCCTACCCAAACT	58.274	50.0	0.0	0.0	0.0	2.66	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
64	65	0.846693	GGGAAGTAGATGGGCATGGT	59.153	55.000	0.00	0.00	0.00	3.55
597	658	2.289010	CCATGGACAGGGCAAGAAAAAC	60.289	50.000	5.56	0.00	0.00	2.43
678	739	0.178926	TCTTCCTACACCCAACCGGA	60.179	55.000	9.46	0.00	34.64	5.14
693	754	5.883673	CCCAACCGGAACATTCTAAATTCTA	59.116	40.000	9.46	0.00	0.00	2.10
1174	1251	1.544825	GGTCTGTAGCTGGTCAGGCA	61.545	60.000	17.15	0.00	37.94	4.75
1237	1315	4.493220	GCTAGCTTCTATGTTGTTCTTGCG	60.493	45.833	7.70	0.00	0.00	4.85
1557	1832	5.123227	TGGCTTAGGATGTATTGTAGTTGC	58.877	41.667	0.00	0.00	0.00	4.17
1812	2091	5.168569	TCATTTGTCCGTTGTGATAGTCTC	58.831	41.667	0.00	0.00	0.00	3.36
1882	2232	3.505464	AGGAGTTCCGTATATATGCGC	57.495	47.619	16.69	0.00	42.08	6.09
1883	2233	2.165845	AGGAGTTCCGTATATATGCGCC	59.834	50.000	16.69	12.00	42.08	6.53
1884	2234	2.094390	GGAGTTCCGTATATATGCGCCA	60.094	50.000	16.69	3.68	34.50	5.69
1885	2235	3.581755	GAGTTCCGTATATATGCGCCAA	58.418	45.455	16.69	9.16	34.50	4.52
1886	2236	3.585862	AGTTCCGTATATATGCGCCAAG	58.414	45.455	16.69	4.56	34.50	3.61
1887	2237	3.257375	AGTTCCGTATATATGCGCCAAGA	59.743	43.478	16.69	6.72	34.50	3.02
1888	2238	3.503827	TCCGTATATATGCGCCAAGAG	57.496	47.619	16.69	3.56	34.50	2.85
1889	2239	3.086282	TCCGTATATATGCGCCAAGAGA	58.914	45.455	16.69	5.74	34.50	3.10
1890	2240	3.128764	TCCGTATATATGCGCCAAGAGAG	59.871	47.826	16.69	2.24	34.50	3.20
1891	2241	3.119459	CCGTATATATGCGCCAAGAGAGT	60.119	47.826	16.69	0.00	34.50	3.24
1892	2242	4.095932	CCGTATATATGCGCCAAGAGAGTA	59.904	45.833	16.69	0.00	34.50	2.59
1893	2243	5.221067	CCGTATATATGCGCCAAGAGAGTAT	60.221	44.000	16.69	0.00	34.50	2.12
1894	2244	5.683302	CGTATATATGCGCCAAGAGAGTATG	59.317	44.000	10.30	0.00	0.00	2.39
1895	2245	5.667539	ATATATGCGCCAAGAGAGTATGT	57.332	39.130	4.18	0.00	0.00	2.29
1896	2246	2.698855	ATGCGCCAAGAGAGTATGTT	57.301	45.000	4.18	0.00	0.00	2.71
1897	2247	1.725641	TGCGCCAAGAGAGTATGTTG	58.274	50.000	4.18	0.00	32.00	3.33
1898	2248	1.275010	TGCGCCAAGAGAGTATGTTGA	59.725	47.619	4.18	0.00	34.07	3.18
1899	2249	2.093500	TGCGCCAAGAGAGTATGTTGAT	60.093	45.455	4.18	0.00	34.07	2.57
1900	2250	3.132111	TGCGCCAAGAGAGTATGTTGATA	59.868	43.478	4.18	0.00	34.07	2.15
1901	2251	4.119862	GCGCCAAGAGAGTATGTTGATAA	58.880	43.478	0.00	0.00	34.07	1.75
1902	2252	4.210120	GCGCCAAGAGAGTATGTTGATAAG	59.790	45.833	0.00	0.00	34.07	1.73
1903	2253	5.592054	CGCCAAGAGAGTATGTTGATAAGA	58.408	41.667	0.00	0.00	34.07	2.10
1904	2254	6.042777	CGCCAAGAGAGTATGTTGATAAGAA	58.957	40.000	0.00	0.00	34.07	2.52
1905	2255	6.019479	CGCCAAGAGAGTATGTTGATAAGAAC	60.019	42.308	0.00	0.00	34.07	3.01
1906	2256	6.258947	GCCAAGAGAGTATGTTGATAAGAACC	59.741	42.308	0.00	0.00	34.07	3.62
1907	2257	7.560368	CCAAGAGAGTATGTTGATAAGAACCT	58.440	38.462	0.00	0.00	34.07	3.50
1908	2258	8.696374	CCAAGAGAGTATGTTGATAAGAACCTA	58.304	37.037	0.00	0.00	34.07	3.08
1909	2259	9.522804	CAAGAGAGTATGTTGATAAGAACCTAC	57.477	37.037	0.00	0.00	34.07	3.18
1910	2260	8.824756	AGAGAGTATGTTGATAAGAACCTACA	57.175	34.615	0.00	0.00	32.41	2.74
1911	2261	8.908903	AGAGAGTATGTTGATAAGAACCTACAG	58.091	37.037	0.00	0.00	32.41	2.74
1912	2262	8.596781	AGAGTATGTTGATAAGAACCTACAGT	57.403	34.615	0.00	0.00	32.41	3.55
1913	2263	9.036980	AGAGTATGTTGATAAGAACCTACAGTT	57.963	33.333	0.00	0.00	43.07	3.16
1914	2264	9.654663	GAGTATGTTGATAAGAACCTACAGTTT	57.345	33.333	0.00	0.00	39.40	2.66
1915	2265	9.654663	AGTATGTTGATAAGAACCTACAGTTTC	57.345	33.333	0.00	0.00	39.40	2.78
1916	2266	9.654663	GTATGTTGATAAGAACCTACAGTTTCT	57.345	33.333	0.00	0.00	39.40	2.52
1918	2268	8.378172	TGTTGATAAGAACCTACAGTTTCTTG	57.622	34.615	10.91	0.00	39.40	3.02
1919	2269	7.444183	TGTTGATAAGAACCTACAGTTTCTTGG	59.556	37.037	10.91	0.00	39.40	3.61
1920	2270	6.472887	TGATAAGAACCTACAGTTTCTTGGG	58.527	40.000	10.91	0.00	39.40	4.12
1921	2271	4.790718	AAGAACCTACAGTTTCTTGGGT	57.209	40.909	1.43	0.00	39.40	4.51
1922	2272	5.899631	AAGAACCTACAGTTTCTTGGGTA	57.100	39.130	1.43	0.00	39.40	3.69
1923	2273	5.899631	AGAACCTACAGTTTCTTGGGTAA	57.100	39.130	0.00	0.00	39.40	2.85
1924	2274	5.866207	AGAACCTACAGTTTCTTGGGTAAG	58.134	41.667	0.00	0.00	39.40	2.34
1925	2275	5.368816	AGAACCTACAGTTTCTTGGGTAAGT	59.631	40.000	0.00	0.00	39.40	2.24
1926	2276	5.641789	ACCTACAGTTTCTTGGGTAAGTT	57.358	39.130	0.00	0.00	35.38	2.66
1927	2277	6.009908	ACCTACAGTTTCTTGGGTAAGTTT	57.990	37.500	0.00	0.00	35.38	2.66
1928	2278	5.826208	ACCTACAGTTTCTTGGGTAAGTTTG	59.174	40.000	0.00	0.00	35.38	2.93
1929	2279	5.240844	CCTACAGTTTCTTGGGTAAGTTTGG	59.759	44.000	0.00	0.00	35.38	3.28
1930	2280	3.958147	ACAGTTTCTTGGGTAAGTTTGGG	59.042	43.478	0.00	0.00	35.38	4.12
1931	2281	3.958147	CAGTTTCTTGGGTAAGTTTGGGT	59.042	43.478	0.00	0.00	35.38	4.51
1932	2282	5.134661	CAGTTTCTTGGGTAAGTTTGGGTA	58.865	41.667	0.00	0.00	35.38	3.69
1933	2283	5.240844	CAGTTTCTTGGGTAAGTTTGGGTAG	59.759	44.000	0.00	0.00	35.38	3.18
1934	2284	4.376225	TTCTTGGGTAAGTTTGGGTAGG	57.624	45.455	0.00	0.00	35.38	3.18
1935	2285	3.600433	TCTTGGGTAAGTTTGGGTAGGA	58.400	45.455	0.00	0.00	35.38	2.94
1936	2286	3.585732	TCTTGGGTAAGTTTGGGTAGGAG	59.414	47.826	0.00	0.00	35.38	3.69
1937	2287	2.994355	TGGGTAAGTTTGGGTAGGAGT	58.006	47.619	0.00	0.00	0.00	3.85
1938	2288	3.329277	TGGGTAAGTTTGGGTAGGAGTT	58.671	45.455	0.00	0.00	0.00	3.01
1939	2289	3.328637	TGGGTAAGTTTGGGTAGGAGTTC	59.671	47.826	0.00	0.00	0.00	3.01
1940	2290	3.307975	GGGTAAGTTTGGGTAGGAGTTCC	60.308	52.174	0.00	0.00	0.00	3.62
1941	2291	2.853235	AAGTTTGGGTAGGAGTTCCG	57.147	50.000	0.00	0.00	42.08	4.30
1942	2292	1.725803	AGTTTGGGTAGGAGTTCCGT	58.274	50.000	0.00	0.00	42.08	4.69
1943	2293	2.893424	AGTTTGGGTAGGAGTTCCGTA	58.107	47.619	0.00	0.00	42.08	4.02
1944	2294	3.447950	AGTTTGGGTAGGAGTTCCGTAT	58.552	45.455	0.00	0.00	42.08	3.06
1945	2295	4.613437	AGTTTGGGTAGGAGTTCCGTATA	58.387	43.478	0.00	0.00	42.08	1.47
1946	2296	5.214293	AGTTTGGGTAGGAGTTCCGTATAT	58.786	41.667	0.00	0.00	42.08	0.86
1947	2297	6.376248	AGTTTGGGTAGGAGTTCCGTATATA	58.624	40.000	0.00	0.00	42.08	0.86
1948	2298	7.015064	AGTTTGGGTAGGAGTTCCGTATATAT	58.985	38.462	0.00	0.00	42.08	0.86
1949	2299	6.845758	TTGGGTAGGAGTTCCGTATATATG	57.154	41.667	0.00	0.00	42.08	1.78
1950	2300	4.708421	TGGGTAGGAGTTCCGTATATATGC	59.292	45.833	0.00	0.00	42.08	3.14
1951	2301	4.708421	GGGTAGGAGTTCCGTATATATGCA	59.292	45.833	1.60	0.00	42.08	3.96
2223	2579	5.441718	TTTTCTCACCTGGCATCTTATCT	57.558	39.130	0.00	0.00	0.00	1.98
2235	2591	6.656902	TGGCATCTTATCTCTTCTGTGAAAT	58.343	36.000	0.00	0.00	0.00	2.17
2380	2736	8.477419	TTCCAACAAGGTGATTCTAATTTCTT	57.523	30.769	0.00	0.00	39.02	2.52
2456	2812	1.453745	ACATACTGCAATGGGCCGG	60.454	57.895	0.00	0.00	43.89	6.13

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
64	65	3.044235	ACTGCATGACGAACAGATCAA	57.956	42.857	0.00	0.00	35.38	2.57
187	188	8.262601	TCTAAATCTGACATGGTACCATACAT	57.737	34.615	26.91	15.33	34.91	2.29
446	500	1.066787	AGAAGCTAGCTCACGGGAAAC	60.067	52.381	19.65	1.80	0.00	2.78
515	569	1.072331	ACAGGCCAACGTTCAGAGAAT	59.928	47.619	5.01	0.00	0.00	2.40
597	658	8.991243	TTGGAATCTTTCATGCTTTCTAATTG	57.009	30.769	0.00	0.00	0.00	2.32
678	739	9.914131	GCTGAAACCTTTAGAATTTAGAATGTT	57.086	29.630	0.00	0.00	0.00	2.71
693	754	2.899900	GGGAATTCCAGCTGAAACCTTT	59.100	45.455	25.67	0.00	36.33	3.11
1174	1251	7.703058	ACTAAAGTACATTTTAGGCAAGCAT	57.297	32.000	15.32	0.00	42.33	3.79
1318	1407	9.283768	ACATTTGTACTATGAATGACAACAGAA	57.716	29.630	13.28	0.00	35.36	3.02
1812	2091	9.573133	GTAGGTTCTTATCAACAAAATTCCATG	57.427	33.333	0.00	0.00	0.00	3.66
1882	2232	7.560368	AGGTTCTTATCAACATACTCTCTTGG	58.440	38.462	0.00	0.00	0.00	3.61
1883	2233	9.522804	GTAGGTTCTTATCAACATACTCTCTTG	57.477	37.037	1.87	0.00	39.40	3.02
1884	2234	9.256228	TGTAGGTTCTTATCAACATACTCTCTT	57.744	33.333	8.95	0.00	41.81	2.85
1885	2235	8.824756	TGTAGGTTCTTATCAACATACTCTCT	57.175	34.615	8.95	0.00	41.81	3.10
1886	2236	8.688151	ACTGTAGGTTCTTATCAACATACTCTC	58.312	37.037	8.95	0.00	41.81	3.20
1887	2237	8.596781	ACTGTAGGTTCTTATCAACATACTCT	57.403	34.615	8.95	0.00	41.81	3.24
1888	2238	9.654663	AAACTGTAGGTTCTTATCAACATACTC	57.345	33.333	8.95	0.00	41.81	2.59
1889	2239	9.654663	GAAACTGTAGGTTCTTATCAACATACT	57.345	33.333	2.48	0.00	41.81	2.12
1890	2240	9.654663	AGAAACTGTAGGTTCTTATCAACATAC	57.345	33.333	6.37	2.08	41.70	2.39
1892	2242	9.003658	CAAGAAACTGTAGGTTCTTATCAACAT	57.996	33.333	20.93	0.00	37.12	2.71
1893	2243	7.444183	CCAAGAAACTGTAGGTTCTTATCAACA	59.556	37.037	20.93	0.00	37.12	3.33
1894	2244	7.094762	CCCAAGAAACTGTAGGTTCTTATCAAC	60.095	40.741	20.93	0.00	37.12	3.18
1895	2245	6.940298	CCCAAGAAACTGTAGGTTCTTATCAA	59.060	38.462	20.93	0.00	37.12	2.57
1896	2246	6.043938	ACCCAAGAAACTGTAGGTTCTTATCA	59.956	38.462	20.93	0.00	37.12	2.15
1897	2247	6.473758	ACCCAAGAAACTGTAGGTTCTTATC	58.526	40.000	20.93	0.00	37.12	1.75
1898	2248	6.449830	ACCCAAGAAACTGTAGGTTCTTAT	57.550	37.500	20.93	9.82	37.12	1.73
1899	2249	5.899631	ACCCAAGAAACTGTAGGTTCTTA	57.100	39.130	20.93	0.00	37.12	2.10
1900	2250	4.790718	ACCCAAGAAACTGTAGGTTCTT	57.209	40.909	16.96	16.96	37.12	2.52
1901	2251	5.368816	ACTTACCCAAGAAACTGTAGGTTCT	59.631	40.000	6.37	6.37	34.65	3.01
1902	2252	5.618236	ACTTACCCAAGAAACTGTAGGTTC	58.382	41.667	1.42	1.42	34.65	3.62
1903	2253	5.641789	ACTTACCCAAGAAACTGTAGGTT	57.358	39.130	0.00	0.00	36.07	3.50
1904	2254	5.641789	AACTTACCCAAGAAACTGTAGGT	57.358	39.130	0.00	0.00	35.60	3.08
1905	2255	5.240844	CCAAACTTACCCAAGAAACTGTAGG	59.759	44.000	0.00	0.00	35.60	3.18
1906	2256	5.240844	CCCAAACTTACCCAAGAAACTGTAG	59.759	44.000	0.00	0.00	35.60	2.74
1907	2257	5.134661	CCCAAACTTACCCAAGAAACTGTA	58.865	41.667	0.00	0.00	35.60	2.74
1908	2258	3.958147	CCCAAACTTACCCAAGAAACTGT	59.042	43.478	0.00	0.00	35.60	3.55
1909	2259	3.958147	ACCCAAACTTACCCAAGAAACTG	59.042	43.478	0.00	0.00	35.60	3.16
1910	2260	4.259933	ACCCAAACTTACCCAAGAAACT	57.740	40.909	0.00	0.00	35.60	2.66
1911	2261	4.521639	CCTACCCAAACTTACCCAAGAAAC	59.478	45.833	0.00	0.00	35.60	2.78
1912	2262	4.416179	TCCTACCCAAACTTACCCAAGAAA	59.584	41.667	0.00	0.00	35.60	2.52
1913	2263	3.982052	TCCTACCCAAACTTACCCAAGAA	59.018	43.478	0.00	0.00	35.60	2.52
1914	2264	3.585732	CTCCTACCCAAACTTACCCAAGA	59.414	47.826	0.00	0.00	35.60	3.02
1915	2265	3.329814	ACTCCTACCCAAACTTACCCAAG	59.670	47.826	0.00	0.00	37.81	3.61
1916	2266	3.329277	ACTCCTACCCAAACTTACCCAA	58.671	45.455	0.00	0.00	0.00	4.12
1917	2267	2.994355	ACTCCTACCCAAACTTACCCA	58.006	47.619	0.00	0.00	0.00	4.51
1918	2268	3.307975	GGAACTCCTACCCAAACTTACCC	60.308	52.174	0.00	0.00	0.00	3.69
1919	2269	3.618263	CGGAACTCCTACCCAAACTTACC	60.618	52.174	0.00	0.00	0.00	2.85
1920	2270	3.007290	ACGGAACTCCTACCCAAACTTAC	59.993	47.826	0.00	0.00	0.00	2.34
1921	2271	3.242011	ACGGAACTCCTACCCAAACTTA	58.758	45.455	0.00	0.00	0.00	2.24
1922	2272	2.052468	ACGGAACTCCTACCCAAACTT	58.948	47.619	0.00	0.00	0.00	2.66
1923	2273	1.725803	ACGGAACTCCTACCCAAACT	58.274	50.000	0.00	0.00	0.00	2.66
1924	2274	3.900966	ATACGGAACTCCTACCCAAAC	57.099	47.619	0.00	0.00	0.00	2.93
1925	2275	6.295462	GCATATATACGGAACTCCTACCCAAA	60.295	42.308	0.00	0.00	0.00	3.28
1926	2276	5.186409	GCATATATACGGAACTCCTACCCAA	59.814	44.000	0.00	0.00	0.00	4.12
1927	2277	4.708421	GCATATATACGGAACTCCTACCCA	59.292	45.833	0.00	0.00	0.00	4.51
1928	2278	4.708421	TGCATATATACGGAACTCCTACCC	59.292	45.833	0.00	0.00	0.00	3.69
1929	2279	5.393896	GGTGCATATATACGGAACTCCTACC	60.394	48.000	0.00	0.00	0.00	3.18
1930	2280	5.184479	TGGTGCATATATACGGAACTCCTAC	59.816	44.000	0.00	0.00	0.00	3.18
1931	2281	5.326900	TGGTGCATATATACGGAACTCCTA	58.673	41.667	0.00	0.00	0.00	2.94
1932	2282	4.157246	TGGTGCATATATACGGAACTCCT	58.843	43.478	0.00	0.00	0.00	3.69
1933	2283	4.530710	TGGTGCATATATACGGAACTCC	57.469	45.455	0.00	0.00	0.00	3.85
1934	2284	5.779922	TCTTGGTGCATATATACGGAACTC	58.220	41.667	0.00	0.00	0.00	3.01
1935	2285	5.801531	TCTTGGTGCATATATACGGAACT	57.198	39.130	0.00	0.00	0.00	3.01
1936	2286	6.482308	ACTTTCTTGGTGCATATATACGGAAC	59.518	38.462	0.00	0.00	0.00	3.62
1937	2287	6.588204	ACTTTCTTGGTGCATATATACGGAA	58.412	36.000	0.00	0.00	0.00	4.30
1938	2288	6.169557	ACTTTCTTGGTGCATATATACGGA	57.830	37.500	0.00	0.00	0.00	4.69
1939	2289	9.084164	GTATACTTTCTTGGTGCATATATACGG	57.916	37.037	0.00	0.00	0.00	4.02
1940	2290	9.634163	TGTATACTTTCTTGGTGCATATATACG	57.366	33.333	4.17	0.00	0.00	3.06
1943	2293	8.103305	CCCTGTATACTTTCTTGGTGCATATAT	58.897	37.037	4.17	0.00	0.00	0.86
1944	2294	7.291416	TCCCTGTATACTTTCTTGGTGCATATA	59.709	37.037	4.17	0.00	0.00	0.86
1945	2295	6.101150	TCCCTGTATACTTTCTTGGTGCATAT	59.899	38.462	4.17	0.00	0.00	1.78
1946	2296	5.427157	TCCCTGTATACTTTCTTGGTGCATA	59.573	40.000	4.17	0.00	0.00	3.14
1947	2297	4.227300	TCCCTGTATACTTTCTTGGTGCAT	59.773	41.667	4.17	0.00	0.00	3.96
1948	2298	3.585289	TCCCTGTATACTTTCTTGGTGCA	59.415	43.478	4.17	0.00	0.00	4.57
1949	2299	4.216411	TCCCTGTATACTTTCTTGGTGC	57.784	45.455	4.17	0.00	0.00	5.01
1950	2300	6.884295	TGATTTCCCTGTATACTTTCTTGGTG	59.116	38.462	4.17	0.00	0.00	4.17
1951	2301	7.027874	TGATTTCCCTGTATACTTTCTTGGT	57.972	36.000	4.17	0.00	0.00	3.67
2456	2812	2.572290	ACAAAATATACAGGCGGGCTC	58.428	47.619	0.00	0.00	0.00	4.70

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.