Multiple sequence alignment - TraesCS2D01G150800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G150800 chr2D 100.000 6605 0 0 1 6605 93081634 93088238 0.000000e+00 12198.0
1 TraesCS2D01G150800 chr2B 93.730 6411 230 63 142 6458 144649391 144655723 0.000000e+00 9454.0
2 TraesCS2D01G150800 chr2B 91.104 326 26 3 1218 1542 728194897 728194574 7.860000e-119 438.0
3 TraesCS2D01G150800 chr2B 81.783 516 50 19 1218 1729 26157232 26156757 6.210000e-105 392.0
4 TraesCS2D01G150800 chr2B 89.091 165 6 4 1 155 144649134 144649296 1.880000e-45 195.0
5 TraesCS2D01G150800 chr2B 94.872 117 5 1 6459 6574 144680730 144680846 1.460000e-41 182.0
6 TraesCS2D01G150800 chr2A 93.667 5906 228 67 10 5851 90758386 90764209 0.000000e+00 8700.0
7 TraesCS2D01G150800 chr2A 85.276 489 45 16 6110 6576 90766658 90767141 4.630000e-131 479.0
8 TraesCS2D01G150800 chr2A 91.257 183 3 5 5907 6083 90764413 90764588 3.080000e-58 237.0
9 TraesCS2D01G150800 chr2A 82.042 284 29 14 1261 1536 118442036 118442305 8.620000e-54 222.0
10 TraesCS2D01G150800 chr3B 92.956 724 47 4 2182 2901 211638021 211637298 0.000000e+00 1051.0
11 TraesCS2D01G150800 chr4B 83.271 532 51 17 1210 1729 622948508 622949013 7.810000e-124 455.0
12 TraesCS2D01G150800 chr5B 82.940 381 35 13 1353 1729 619125645 619125999 3.840000e-82 316.0
13 TraesCS2D01G150800 chr5B 82.940 381 35 13 1353 1729 619178937 619179291 3.840000e-82 316.0
14 TraesCS2D01G150800 chr3A 79.859 283 37 14 1261 1536 514465599 514465868 8.740000e-44 189.0
15 TraesCS2D01G150800 chr6D 100.000 37 0 0 6569 6605 141274409 141274373 1.190000e-07 69.4
16 TraesCS2D01G150800 chr6D 100.000 36 0 0 6570 6605 81916216 81916181 4.270000e-07 67.6
17 TraesCS2D01G150800 chr6D 100.000 34 0 0 6572 6605 160222637 160222604 5.530000e-06 63.9
18 TraesCS2D01G150800 chr6B 100.000 36 0 0 6570 6605 463562939 463562974 4.270000e-07 67.6
19 TraesCS2D01G150800 chr6B 94.872 39 1 1 6567 6605 588830730 588830693 7.150000e-05 60.2
20 TraesCS2D01G150800 chr4D 97.368 38 1 0 6568 6605 484450505 484450542 1.540000e-06 65.8
21 TraesCS2D01G150800 chr4D 92.683 41 2 1 6565 6605 97721486 97721525 2.570000e-04 58.4
22 TraesCS2D01G150800 chr5A 95.122 41 1 1 6566 6605 635933891 635933851 5.530000e-06 63.9
23 TraesCS2D01G150800 chr4A 95.000 40 0 2 6568 6605 69275715 69275676 1.990000e-05 62.1
24 TraesCS2D01G150800 chr3D 100.000 28 0 0 1330 1357 412226112 412226139 1.200000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G150800 chr2D 93081634 93088238 6604 False 12198.000000 12198 100.000000 1 6605 1 chr2D.!!$F1 6604
1 TraesCS2D01G150800 chr2B 144649134 144655723 6589 False 4824.500000 9454 91.410500 1 6458 2 chr2B.!!$F2 6457
2 TraesCS2D01G150800 chr2A 90758386 90767141 8755 False 3138.666667 8700 90.066667 10 6576 3 chr2A.!!$F2 6566
3 TraesCS2D01G150800 chr3B 211637298 211638021 723 True 1051.000000 1051 92.956000 2182 2901 1 chr3B.!!$R1 719
4 TraesCS2D01G150800 chr4B 622948508 622949013 505 False 455.000000 455 83.271000 1210 1729 1 chr4B.!!$F1 519

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
739 903 1.302913 TTTCTCCGGCGGCATTTGA 60.303 52.632 23.83 10.94 0.00 2.69 F
1639 1830 0.463474 GCCTCTGCCATTCAGTCTCC 60.463 60.000 0.00 0.00 43.32 3.71 F
1729 1924 1.134699 TCCGTCTGAATGATGCTGTCC 60.135 52.381 0.00 0.00 0.00 4.02 F
3039 3276 0.456142 CAAGTGACGCGTGCTAGCTA 60.456 55.000 20.70 0.00 34.40 3.32 F
4624 4868 2.649190 TGCACTTAAACAGACTTGCCA 58.351 42.857 0.00 0.00 0.00 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1681 1872 0.035036 TACCCAATCACGCGTGGAAA 59.965 50.0 36.41 20.14 37.03 3.13 R
2702 2938 1.096967 TGTTGTCCAGCAGTGCACTG 61.097 55.0 37.09 37.09 46.40 3.66 R
3155 3392 1.256361 TGGCCTGTCAGAGAGCTCAG 61.256 60.0 17.77 5.46 0.00 3.35 R
5015 5269 0.512952 GCGTGCTGTAAACTGGACTG 59.487 55.0 9.31 5.17 34.83 3.51 R
6368 8836 0.189822 CAACCCCTTCCTTTTCCCCA 59.810 55.0 0.00 0.00 0.00 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 3.837146 GAGAGCAGGATCATTCTGGGATA 59.163 47.826 0.00 0.00 33.16 2.59
40 41 4.470664 AGCAGGATCATTCTGGGATAGATC 59.529 45.833 0.00 0.00 34.80 2.75
130 139 1.650242 TTGTTCCCTTGCCCTGGTGA 61.650 55.000 0.00 0.00 0.00 4.02
131 140 1.303643 GTTCCCTTGCCCTGGTGAG 60.304 63.158 0.00 0.00 0.00 3.51
132 141 1.774217 TTCCCTTGCCCTGGTGAGT 60.774 57.895 0.00 0.00 0.00 3.41
181 298 1.528129 GCAACAGAAACAGGGGAGAG 58.472 55.000 0.00 0.00 0.00 3.20
183 300 2.487265 GCAACAGAAACAGGGGAGAGAA 60.487 50.000 0.00 0.00 0.00 2.87
413 553 2.042025 GCAGAGCTCCTCTCCCCT 60.042 66.667 10.93 0.00 42.90 4.79
414 554 2.133641 GCAGAGCTCCTCTCCCCTC 61.134 68.421 10.93 0.00 42.90 4.30
418 558 3.773154 GCTCCTCTCCCCTCCCCT 61.773 72.222 0.00 0.00 0.00 4.79
422 562 3.039526 CTCTCCCCTCCCCTCCCT 61.040 72.222 0.00 0.00 0.00 4.20
423 563 2.543637 TCTCCCCTCCCCTCCCTT 60.544 66.667 0.00 0.00 0.00 3.95
424 564 2.040359 CTCCCCTCCCCTCCCTTC 60.040 72.222 0.00 0.00 0.00 3.46
425 565 3.707189 TCCCCTCCCCTCCCTTCC 61.707 72.222 0.00 0.00 0.00 3.46
426 566 4.845307 CCCCTCCCCTCCCTTCCC 62.845 77.778 0.00 0.00 0.00 3.97
427 567 3.711782 CCCTCCCCTCCCTTCCCT 61.712 72.222 0.00 0.00 0.00 4.20
428 568 2.040359 CCTCCCCTCCCTTCCCTC 60.040 72.222 0.00 0.00 0.00 4.30
429 569 2.040359 CTCCCCTCCCTTCCCTCC 60.040 72.222 0.00 0.00 0.00 4.30
430 570 2.543637 TCCCCTCCCTTCCCTCCT 60.544 66.667 0.00 0.00 0.00 3.69
492 636 2.695147 CCAGCTGGGTGTTTCTTTTCTT 59.305 45.455 26.14 0.00 0.00 2.52
653 807 3.474570 GCCCCTGCTCTGATCCGT 61.475 66.667 0.00 0.00 33.53 4.69
679 833 3.130160 CCTTCGAGCCAAGCCAGC 61.130 66.667 0.00 0.00 0.00 4.85
680 834 3.130160 CTTCGAGCCAAGCCAGCC 61.130 66.667 0.00 0.00 0.00 4.85
681 835 4.722700 TTCGAGCCAAGCCAGCCC 62.723 66.667 0.00 0.00 0.00 5.19
739 903 1.302913 TTTCTCCGGCGGCATTTGA 60.303 52.632 23.83 10.94 0.00 2.69
1017 1192 3.794737 CATGGGTCTCTGTCATGGG 57.205 57.895 0.00 0.00 35.82 4.00
1212 1390 3.003173 AGCTACAAGGGCTCGCCA 61.003 61.111 10.51 0.00 34.70 5.69
1540 1726 2.677228 CCAAGGCCAAGGTCCGAT 59.323 61.111 5.01 0.00 0.00 4.18
1542 1728 0.474184 CCAAGGCCAAGGTCCGATAT 59.526 55.000 5.01 0.00 0.00 1.63
1543 1729 1.133792 CCAAGGCCAAGGTCCGATATT 60.134 52.381 5.01 0.00 0.00 1.28
1544 1730 2.654863 CAAGGCCAAGGTCCGATATTT 58.345 47.619 5.01 0.00 0.00 1.40
1554 1740 6.338146 CAAGGTCCGATATTTTACTCACTCA 58.662 40.000 0.00 0.00 0.00 3.41
1621 1812 0.797249 CGAGCTGCTTGCAGAAATGC 60.797 55.000 24.67 10.75 45.94 3.56
1639 1830 0.463474 GCCTCTGCCATTCAGTCTCC 60.463 60.000 0.00 0.00 43.32 3.71
1642 1833 1.829849 CTCTGCCATTCAGTCTCCTGA 59.170 52.381 0.00 0.00 45.95 3.86
1647 1838 2.744494 GCCATTCAGTCTCCTGATGTCC 60.744 54.545 0.00 0.00 46.80 4.02
1684 1875 5.288804 TGCTCTGCATTTTACCACTTTTTC 58.711 37.500 0.00 0.00 31.71 2.29
1729 1924 1.134699 TCCGTCTGAATGATGCTGTCC 60.135 52.381 0.00 0.00 0.00 4.02
1763 1958 2.069273 CGTCAAGATCCGTCTTTTGCT 58.931 47.619 0.00 0.00 41.92 3.91
1925 2143 1.222115 GAGCGTCGCTTGGTTCAACT 61.222 55.000 22.67 0.00 39.88 3.16
2144 2369 1.302511 GATTGGTGGTGGCGAGTGT 60.303 57.895 0.00 0.00 0.00 3.55
2164 2389 3.432051 GATGGTCACCGAGCTCCCG 62.432 68.421 8.47 0.47 0.00 5.14
2166 2391 4.131088 GGTCACCGAGCTCCCGAC 62.131 72.222 8.47 11.74 0.00 4.79
2180 2407 1.139734 CCGACGTCCATGTCCTCTG 59.860 63.158 10.58 0.00 35.40 3.35
2279 2510 4.616835 GCAGGCCAAAAGTGATACTTCAAG 60.617 45.833 5.01 0.00 37.47 3.02
2295 2526 6.852858 ACTTCAAGTCTGTTTAAAGAGCTC 57.147 37.500 5.27 5.27 0.00 4.09
2537 2770 1.941294 GAAGATGAGCTCACTGGCATG 59.059 52.381 20.97 0.00 34.17 4.06
2702 2938 5.391312 AATTGACCACTTATTGCTTGTCC 57.609 39.130 0.00 0.00 0.00 4.02
2729 2965 0.895100 TGCTGGACAACATTGGGCTC 60.895 55.000 0.00 0.00 0.00 4.70
2894 3130 8.082852 AGTTGCACGATCTTACCAGTAATATAG 58.917 37.037 0.00 0.00 0.00 1.31
2897 3133 9.070179 TGCACGATCTTACCAGTAATATAGTAA 57.930 33.333 0.00 0.00 0.00 2.24
2923 3159 5.639757 TCATCATATCGGCTTTGTTTGTTG 58.360 37.500 0.00 0.00 0.00 3.33
2926 3162 4.277174 TCATATCGGCTTTGTTTGTTGTGT 59.723 37.500 0.00 0.00 0.00 3.72
2928 3164 2.088423 TCGGCTTTGTTTGTTGTGTCT 58.912 42.857 0.00 0.00 0.00 3.41
2939 3175 4.782019 TTGTTGTGTCTCTGTTTGCTTT 57.218 36.364 0.00 0.00 0.00 3.51
3039 3276 0.456142 CAAGTGACGCGTGCTAGCTA 60.456 55.000 20.70 0.00 34.40 3.32
3155 3392 5.906113 TGTCAGAAGAGAAGTGAGGATAC 57.094 43.478 0.00 0.00 0.00 2.24
3414 3651 4.823157 TCAAATGGCGCTTACTGTAACTA 58.177 39.130 7.64 0.00 0.00 2.24
3415 3652 5.239351 TCAAATGGCGCTTACTGTAACTAA 58.761 37.500 7.64 0.00 0.00 2.24
3416 3653 5.121142 TCAAATGGCGCTTACTGTAACTAAC 59.879 40.000 7.64 0.00 0.00 2.34
3484 3721 6.423905 GCGAACTACTTGATAAGATATTGGCA 59.576 38.462 0.00 0.00 0.00 4.92
3495 3732 8.439971 TGATAAGATATTGGCAAGGTACAATCT 58.560 33.333 5.96 4.44 38.24 2.40
3552 3789 6.328934 TGATTATATCTGCTGGGGTTCTAACA 59.671 38.462 0.00 0.00 0.00 2.41
3914 4155 9.532494 TTTTCCCAGAATTTTCTATTCTCATCA 57.468 29.630 0.00 0.00 36.32 3.07
4013 4254 6.920758 TGGTCCATTCAGATTTTTGTTTAACG 59.079 34.615 0.00 0.00 0.00 3.18
4387 4628 9.029243 CACAAGCTCTCAGTAAGAACTATATTG 57.971 37.037 0.00 0.00 33.48 1.90
4621 4865 6.545504 ACACTATGCACTTAAACAGACTTG 57.454 37.500 0.00 0.00 0.00 3.16
4624 4868 2.649190 TGCACTTAAACAGACTTGCCA 58.351 42.857 0.00 0.00 0.00 4.92
4625 4869 3.020274 TGCACTTAAACAGACTTGCCAA 58.980 40.909 0.00 0.00 0.00 4.52
4626 4870 3.445450 TGCACTTAAACAGACTTGCCAAA 59.555 39.130 0.00 0.00 0.00 3.28
4627 4871 4.081972 TGCACTTAAACAGACTTGCCAAAA 60.082 37.500 0.00 0.00 0.00 2.44
4628 4872 4.504097 GCACTTAAACAGACTTGCCAAAAG 59.496 41.667 0.00 0.00 0.00 2.27
4629 4873 5.678616 GCACTTAAACAGACTTGCCAAAAGA 60.679 40.000 0.00 0.00 0.00 2.52
4785 5039 8.201464 TGAATGTTCCTTTCGCTGTTATATAGA 58.799 33.333 0.00 0.00 0.00 1.98
5015 5269 9.286946 CGGTTAGTAATCCTATATTCGTCATTC 57.713 37.037 0.00 0.00 0.00 2.67
5020 5274 8.524487 AGTAATCCTATATTCGTCATTCAGTCC 58.476 37.037 0.00 0.00 0.00 3.85
5032 5286 4.065088 TCATTCAGTCCAGTTTACAGCAC 58.935 43.478 0.00 0.00 0.00 4.40
5179 5433 6.790232 TGTATGATGTATTGGACTGAGACA 57.210 37.500 0.00 0.00 0.00 3.41
5182 5436 3.837731 TGATGTATTGGACTGAGACACCA 59.162 43.478 0.00 0.00 0.00 4.17
5209 5463 5.852282 ACCTGCCAAAATTATGGTGTATC 57.148 39.130 0.00 0.00 42.75 2.24
5378 5632 2.724977 TCGTGATCGAAGAACTTGCT 57.275 45.000 0.00 0.00 43.58 3.91
5401 5655 3.484334 GGTACGAGTCTGAACTGTACC 57.516 52.381 14.12 14.12 44.05 3.34
5409 5667 3.904339 AGTCTGAACTGTACCCTGAACAT 59.096 43.478 0.00 0.00 33.32 2.71
5414 5672 6.708949 TCTGAACTGTACCCTGAACATTTTAC 59.291 38.462 0.00 0.00 0.00 2.01
5427 5685 6.676950 TGAACATTTTACGCATGATCACTTT 58.323 32.000 0.00 0.00 30.76 2.66
5428 5686 6.581919 TGAACATTTTACGCATGATCACTTTG 59.418 34.615 0.00 0.00 30.76 2.77
5443 5701 4.786507 TCACTTTGCATTTTCACTGATCG 58.213 39.130 0.00 0.00 0.00 3.69
5445 5703 2.634982 TTGCATTTTCACTGATCGCC 57.365 45.000 0.00 0.00 0.00 5.54
5448 5706 1.791555 GCATTTTCACTGATCGCCGTG 60.792 52.381 3.90 3.90 0.00 4.94
5634 5892 8.667463 GGAAAACAAGCATTATTATTGTTGCAT 58.333 29.630 3.55 0.00 44.18 3.96
5635 5893 9.693157 GAAAACAAGCATTATTATTGTTGCATC 57.307 29.630 3.55 0.00 44.18 3.91
5636 5894 8.774890 AAACAAGCATTATTATTGTTGCATCA 57.225 26.923 3.55 0.00 44.18 3.07
5637 5895 8.774890 AACAAGCATTATTATTGTTGCATCAA 57.225 26.923 12.39 12.39 43.52 2.57
5638 5896 8.951787 ACAAGCATTATTATTGTTGCATCAAT 57.048 26.923 22.85 22.85 40.50 2.57
5709 5967 2.027605 CTGTGTGCGTGGACGACT 59.972 61.111 2.73 0.00 43.02 4.18
5733 5991 0.473694 TTTGAGGTGGCTGGAGGAGA 60.474 55.000 0.00 0.00 0.00 3.71
5837 6100 6.471233 TGCTTGATGCTTATGACTACTACT 57.529 37.500 0.00 0.00 43.37 2.57
5864 6127 4.537135 AGCTACTAGTGCTTGCTTGTAA 57.463 40.909 5.39 0.00 37.52 2.41
5868 6131 2.372172 ACTAGTGCTTGCTTGTAACCCT 59.628 45.455 0.00 0.00 0.00 4.34
5869 6132 1.897560 AGTGCTTGCTTGTAACCCTC 58.102 50.000 0.00 0.00 0.00 4.30
5872 6135 0.038310 GCTTGCTTGTAACCCTCCCT 59.962 55.000 0.00 0.00 0.00 4.20
5873 6136 1.950954 GCTTGCTTGTAACCCTCCCTC 60.951 57.143 0.00 0.00 0.00 4.30
6016 6430 1.004277 GAGACTGCTGGTTGTCGTCG 61.004 60.000 0.00 0.00 38.16 5.12
6017 6431 1.299926 GACTGCTGGTTGTCGTCGT 60.300 57.895 0.00 0.00 0.00 4.34
6018 6432 1.276145 GACTGCTGGTTGTCGTCGTC 61.276 60.000 0.00 0.00 0.00 4.20
6019 6433 1.299850 CTGCTGGTTGTCGTCGTCA 60.300 57.895 0.00 0.00 0.00 4.35
6020 6434 1.278172 CTGCTGGTTGTCGTCGTCAG 61.278 60.000 0.00 0.00 0.00 3.51
6021 6435 1.299926 GCTGGTTGTCGTCGTCAGT 60.300 57.895 0.00 0.00 0.00 3.41
6022 6436 1.548973 GCTGGTTGTCGTCGTCAGTG 61.549 60.000 0.00 0.00 0.00 3.66
6024 6438 0.248743 TGGTTGTCGTCGTCAGTGTC 60.249 55.000 0.00 0.00 0.00 3.67
6028 6442 0.309922 TGTCGTCGTCAGTGTCCTTC 59.690 55.000 0.00 0.00 0.00 3.46
6034 6448 3.195661 GTCGTCAGTGTCCTTCTTTTGT 58.804 45.455 0.00 0.00 0.00 2.83
6040 6454 5.123979 GTCAGTGTCCTTCTTTTGTTGTCTT 59.876 40.000 0.00 0.00 0.00 3.01
6061 6475 9.524106 TGTCTTAAATAAGGTGTATGTATGTCG 57.476 33.333 0.62 0.00 34.14 4.35
6062 6476 9.525409 GTCTTAAATAAGGTGTATGTATGTCGT 57.475 33.333 0.62 0.00 34.14 4.34
6063 6477 9.524106 TCTTAAATAAGGTGTATGTATGTCGTG 57.476 33.333 0.62 0.00 34.14 4.35
6064 6478 8.651391 TTAAATAAGGTGTATGTATGTCGTGG 57.349 34.615 0.00 0.00 0.00 4.94
6065 6479 6.474140 AATAAGGTGTATGTATGTCGTGGA 57.526 37.500 0.00 0.00 0.00 4.02
6066 6480 4.386867 AAGGTGTATGTATGTCGTGGAG 57.613 45.455 0.00 0.00 0.00 3.86
6067 6481 3.628008 AGGTGTATGTATGTCGTGGAGA 58.372 45.455 0.00 0.00 0.00 3.71
6068 6482 4.215908 AGGTGTATGTATGTCGTGGAGAT 58.784 43.478 0.00 0.00 0.00 2.75
6069 6483 4.278669 AGGTGTATGTATGTCGTGGAGATC 59.721 45.833 0.00 0.00 0.00 2.75
6070 6484 4.278669 GGTGTATGTATGTCGTGGAGATCT 59.721 45.833 0.00 0.00 0.00 2.75
6071 6485 5.453648 GTGTATGTATGTCGTGGAGATCTC 58.546 45.833 14.75 14.75 0.00 2.75
6146 8607 3.053077 TGGGGGATTAGTGGTTAGGATG 58.947 50.000 0.00 0.00 0.00 3.51
6160 8621 4.339247 GGTTAGGATGTTGATTGTGGATGG 59.661 45.833 0.00 0.00 0.00 3.51
6186 8647 9.301153 GGTTTCTTATTATGCAAGTAATGGTTG 57.699 33.333 0.00 0.00 0.00 3.77
6196 8657 6.904498 TGCAAGTAATGGTTGTTATGTGTAC 58.096 36.000 0.00 0.00 0.00 2.90
6202 8663 6.417191 AATGGTTGTTATGTGTACGTGATC 57.583 37.500 0.00 0.00 0.00 2.92
6203 8664 5.142061 TGGTTGTTATGTGTACGTGATCT 57.858 39.130 0.00 0.00 0.00 2.75
6204 8665 4.926832 TGGTTGTTATGTGTACGTGATCTG 59.073 41.667 0.00 0.00 0.00 2.90
6206 8667 5.810587 GGTTGTTATGTGTACGTGATCTGAT 59.189 40.000 0.00 0.00 0.00 2.90
6207 8668 6.237835 GGTTGTTATGTGTACGTGATCTGATG 60.238 42.308 0.00 0.00 0.00 3.07
6209 8670 6.805713 TGTTATGTGTACGTGATCTGATGAT 58.194 36.000 0.00 0.00 35.26 2.45
6210 8671 7.936584 TGTTATGTGTACGTGATCTGATGATA 58.063 34.615 0.00 0.00 32.19 2.15
6217 8685 4.152647 ACGTGATCTGATGATAGCCCTTA 58.847 43.478 0.00 0.00 32.19 2.69
6242 8710 0.615331 ATGACCAACTGACGGATGCT 59.385 50.000 0.00 0.00 0.00 3.79
6243 8711 0.037326 TGACCAACTGACGGATGCTC 60.037 55.000 0.00 0.00 0.00 4.26
6244 8712 1.078759 GACCAACTGACGGATGCTCG 61.079 60.000 0.00 0.00 0.00 5.03
6245 8713 2.456119 CCAACTGACGGATGCTCGC 61.456 63.158 0.00 0.00 0.00 5.03
6276 8744 2.632996 TCAGTTAGGCAGTAGTGTGCTT 59.367 45.455 0.00 0.00 43.45 3.91
6293 8761 2.880268 TGCTTGTGTGTTTCTCCTCATG 59.120 45.455 0.00 0.00 0.00 3.07
6294 8762 2.351157 GCTTGTGTGTTTCTCCTCATGC 60.351 50.000 0.00 0.00 0.00 4.06
6354 8822 3.988379 TGTTGCATGAACAGAAAGGTC 57.012 42.857 0.00 0.00 39.78 3.85
6376 8844 7.452189 AGGTCGTAAAGAAAAATATGGGGAAAA 59.548 33.333 0.00 0.00 0.00 2.29
6399 8867 0.537371 AGGGGTTGCCTCAAAAGACG 60.537 55.000 0.00 0.00 0.00 4.18
6427 8895 0.593773 GCGTCAAATGTTGCAACGGT 60.594 50.000 23.79 12.83 33.20 4.83
6462 8930 2.826428 CAAGGATCCAGTGGTCGTATG 58.174 52.381 15.82 0.99 0.00 2.39
6463 8931 2.160721 AGGATCCAGTGGTCGTATGT 57.839 50.000 15.82 0.00 0.00 2.29
6464 8932 3.308035 AGGATCCAGTGGTCGTATGTA 57.692 47.619 15.82 0.00 0.00 2.29
6465 8933 3.845860 AGGATCCAGTGGTCGTATGTAT 58.154 45.455 15.82 0.00 0.00 2.29
6466 8934 3.574396 AGGATCCAGTGGTCGTATGTATG 59.426 47.826 15.82 0.00 0.00 2.39
6467 8935 2.882927 TCCAGTGGTCGTATGTATGC 57.117 50.000 9.54 0.00 0.00 3.14
6468 8936 2.104170 TCCAGTGGTCGTATGTATGCA 58.896 47.619 9.54 0.00 0.00 3.96
6469 8937 2.159156 TCCAGTGGTCGTATGTATGCAC 60.159 50.000 9.54 0.00 0.00 4.57
6471 8939 1.138266 AGTGGTCGTATGTATGCACCC 59.862 52.381 0.00 0.00 0.00 4.61
6472 8940 1.138266 GTGGTCGTATGTATGCACCCT 59.862 52.381 0.00 0.00 0.00 4.34
6473 8941 1.834896 TGGTCGTATGTATGCACCCTT 59.165 47.619 0.00 0.00 0.00 3.95
6474 8942 3.032459 TGGTCGTATGTATGCACCCTTA 58.968 45.455 0.00 0.00 0.00 2.69
6476 8944 4.101898 TGGTCGTATGTATGCACCCTTATT 59.898 41.667 0.00 0.00 0.00 1.40
6478 8946 5.294356 GTCGTATGTATGCACCCTTATTCA 58.706 41.667 0.00 0.00 0.00 2.57
6479 8947 5.756347 GTCGTATGTATGCACCCTTATTCAA 59.244 40.000 0.00 0.00 0.00 2.69
6480 8948 5.756347 TCGTATGTATGCACCCTTATTCAAC 59.244 40.000 0.00 0.00 0.00 3.18
6481 8949 5.049680 CGTATGTATGCACCCTTATTCAACC 60.050 44.000 0.00 0.00 0.00 3.77
6482 8950 3.275143 TGTATGCACCCTTATTCAACCG 58.725 45.455 0.00 0.00 0.00 4.44
6486 8968 4.757019 TGCACCCTTATTCAACCGTATA 57.243 40.909 0.00 0.00 0.00 1.47
6488 8970 4.162698 TGCACCCTTATTCAACCGTATACT 59.837 41.667 0.56 0.00 0.00 2.12
6518 9000 7.177744 AGTTTTCTTGAAGGAGTAGAGTAGAGG 59.822 40.741 0.00 0.00 0.00 3.69
6520 9002 6.390048 TCTTGAAGGAGTAGAGTAGAGGAA 57.610 41.667 0.00 0.00 0.00 3.36
6521 9003 6.975949 TCTTGAAGGAGTAGAGTAGAGGAAT 58.024 40.000 0.00 0.00 0.00 3.01
6523 9005 4.890581 TGAAGGAGTAGAGTAGAGGAATGC 59.109 45.833 0.00 0.00 0.00 3.56
6524 9006 3.482436 AGGAGTAGAGTAGAGGAATGCG 58.518 50.000 0.00 0.00 0.00 4.73
6525 9007 2.030628 GGAGTAGAGTAGAGGAATGCGC 60.031 54.545 0.00 0.00 0.00 6.09
6527 9009 4.066490 GAGTAGAGTAGAGGAATGCGCTA 58.934 47.826 9.73 0.00 0.00 4.26
6528 9010 4.462133 AGTAGAGTAGAGGAATGCGCTAA 58.538 43.478 9.73 0.00 0.00 3.09
6530 9012 4.737855 AGAGTAGAGGAATGCGCTAAAA 57.262 40.909 9.73 0.00 0.00 1.52
6531 9013 4.688021 AGAGTAGAGGAATGCGCTAAAAG 58.312 43.478 9.73 0.00 0.00 2.27
6532 9014 3.198872 AGTAGAGGAATGCGCTAAAAGC 58.801 45.455 9.73 0.00 38.02 3.51
6533 9015 2.409948 AGAGGAATGCGCTAAAAGCT 57.590 45.000 9.73 0.00 39.60 3.74
6571 9058 9.209175 GACTTTGTTCAGAGAGCTCTAATTTTA 57.791 33.333 18.25 0.00 37.98 1.52
6576 9063 8.157476 TGTTCAGAGAGCTCTAATTTTAAACCT 58.843 33.333 18.25 2.00 37.98 3.50
6577 9064 9.654663 GTTCAGAGAGCTCTAATTTTAAACCTA 57.345 33.333 18.25 0.00 37.98 3.08
6597 9084 9.620660 AAACCTAAAATCTAAAAAGTGCATACG 57.379 29.630 0.00 0.00 0.00 3.06
6598 9085 7.248437 ACCTAAAATCTAAAAAGTGCATACGC 58.752 34.615 0.00 0.00 39.24 4.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 1.203492 ACTTGGAACCTCAGGGGATCT 60.203 52.381 0.00 0.00 37.11 2.75
40 41 1.952621 TCTACTTGGAACCTCAGGGG 58.047 55.000 0.00 0.00 41.89 4.79
41 42 3.107601 TCATCTACTTGGAACCTCAGGG 58.892 50.000 0.00 0.00 38.88 4.45
42 43 4.701765 CATCATCTACTTGGAACCTCAGG 58.298 47.826 0.00 0.00 0.00 3.86
43 44 4.125703 GCATCATCTACTTGGAACCTCAG 58.874 47.826 0.00 0.00 0.00 3.35
44 45 3.776969 AGCATCATCTACTTGGAACCTCA 59.223 43.478 0.00 0.00 0.00 3.86
47 48 2.615912 GCAGCATCATCTACTTGGAACC 59.384 50.000 0.00 0.00 0.00 3.62
48 49 3.311871 CAGCAGCATCATCTACTTGGAAC 59.688 47.826 0.00 0.00 0.00 3.62
49 50 3.198417 TCAGCAGCATCATCTACTTGGAA 59.802 43.478 0.00 0.00 0.00 3.53
130 139 0.751643 GTTTGCTGGTCACCACCACT 60.752 55.000 0.00 0.00 46.63 4.00
131 140 1.034838 TGTTTGCTGGTCACCACCAC 61.035 55.000 0.00 0.00 46.63 4.16
413 553 2.543637 AGGAGGGAAGGGAGGGGA 60.544 66.667 0.00 0.00 0.00 4.81
414 554 2.040359 GAGGAGGGAAGGGAGGGG 60.040 72.222 0.00 0.00 0.00 4.79
418 558 1.772561 AAAGGGGAGGAGGGAAGGGA 61.773 60.000 0.00 0.00 0.00 4.20
422 562 1.670059 GAGAAAAGGGGAGGAGGGAA 58.330 55.000 0.00 0.00 0.00 3.97
423 563 0.253207 GGAGAAAAGGGGAGGAGGGA 60.253 60.000 0.00 0.00 0.00 4.20
424 564 1.282653 GGGAGAAAAGGGGAGGAGGG 61.283 65.000 0.00 0.00 0.00 4.30
425 565 1.282653 GGGGAGAAAAGGGGAGGAGG 61.283 65.000 0.00 0.00 0.00 4.30
426 566 0.253394 AGGGGAGAAAAGGGGAGGAG 60.253 60.000 0.00 0.00 0.00 3.69
427 567 0.253207 GAGGGGAGAAAAGGGGAGGA 60.253 60.000 0.00 0.00 0.00 3.71
428 568 1.282653 GGAGGGGAGAAAAGGGGAGG 61.283 65.000 0.00 0.00 0.00 4.30
429 569 1.282653 GGGAGGGGAGAAAAGGGGAG 61.283 65.000 0.00 0.00 0.00 4.30
430 570 1.230182 GGGAGGGGAGAAAAGGGGA 60.230 63.158 0.00 0.00 0.00 4.81
492 636 0.983378 GGCTGCTAGGAAGGAAGGGA 60.983 60.000 0.00 0.00 0.00 4.20
653 807 2.683933 GCTCGAAGGAGGGGTGGA 60.684 66.667 0.00 0.00 40.80 4.02
711 865 1.737363 CGCCGGAGAAAGAAAGAGAGG 60.737 57.143 5.05 0.00 0.00 3.69
712 866 1.634702 CGCCGGAGAAAGAAAGAGAG 58.365 55.000 5.05 0.00 0.00 3.20
739 903 4.042684 AGAATCCTTTCCTTGCAGAGAACT 59.957 41.667 0.32 0.00 31.84 3.01
827 991 1.746991 CCGCCAAGAAAGGAGCCTC 60.747 63.158 0.00 0.00 0.00 4.70
831 1003 2.751837 GCCCCGCCAAGAAAGGAG 60.752 66.667 0.00 0.00 0.00 3.69
911 1083 3.853698 TTTCCCCCAGAAACGGCGG 62.854 63.158 13.24 0.00 39.60 6.13
1017 1192 2.589159 GGGATTCGCGAGGGCTTC 60.589 66.667 9.59 2.83 36.88 3.86
1540 1726 4.021807 TGGCGTGAGTGAGTGAGTAAAATA 60.022 41.667 0.00 0.00 0.00 1.40
1542 1728 2.101750 TGGCGTGAGTGAGTGAGTAAAA 59.898 45.455 0.00 0.00 0.00 1.52
1543 1729 1.684450 TGGCGTGAGTGAGTGAGTAAA 59.316 47.619 0.00 0.00 0.00 2.01
1544 1730 1.324383 TGGCGTGAGTGAGTGAGTAA 58.676 50.000 0.00 0.00 0.00 2.24
1554 1740 3.083997 GGGAGGGATGGCGTGAGT 61.084 66.667 0.00 0.00 0.00 3.41
1639 1830 1.400846 GCAGCTGAACATGGACATCAG 59.599 52.381 20.43 12.84 42.70 2.90
1642 1833 1.749063 CATGCAGCTGAACATGGACAT 59.251 47.619 20.43 5.59 39.98 3.06
1681 1872 0.035036 TACCCAATCACGCGTGGAAA 59.965 50.000 36.41 20.14 37.03 3.13
1684 1875 0.461163 TGATACCCAATCACGCGTGG 60.461 55.000 36.41 23.74 39.77 4.94
1729 1924 2.807967 TCTTGACGACAAAATGAGCAGG 59.192 45.455 1.35 0.00 35.49 4.85
1763 1958 5.356190 AGTCGAGATTGAATCTAACGTGGTA 59.644 40.000 7.82 0.00 40.38 3.25
2144 2369 0.755698 GGGAGCTCGGTGACCATCTA 60.756 60.000 7.83 0.00 0.00 1.98
2164 2389 0.179124 GAGCAGAGGACATGGACGTC 60.179 60.000 7.13 7.13 35.03 4.34
2166 2391 0.534412 AAGAGCAGAGGACATGGACG 59.466 55.000 0.00 0.00 0.00 4.79
2170 2395 5.534207 AGATAAGAAGAGCAGAGGACATG 57.466 43.478 0.00 0.00 0.00 3.21
2180 2407 5.815222 GGTGAGGAAAGAAGATAAGAAGAGC 59.185 44.000 0.00 0.00 0.00 4.09
2295 2526 1.233285 GGGAGGCGCATAATGAGCAG 61.233 60.000 10.83 0.00 45.19 4.24
2537 2770 3.314357 ACAACTTCGCTTGTTTCCTAACC 59.686 43.478 0.00 0.00 29.66 2.85
2610 2846 5.407995 CGCAACCCATTTACAATGAAACAAT 59.592 36.000 0.00 0.00 0.00 2.71
2702 2938 1.096967 TGTTGTCCAGCAGTGCACTG 61.097 55.000 37.09 37.09 46.40 3.66
2729 2965 2.571212 TCCAACAACCAGCTACTGTTG 58.429 47.619 20.12 20.12 46.11 3.33
2894 3130 6.604735 ACAAAGCCGATATGATGAACTTAC 57.395 37.500 0.00 0.00 0.00 2.34
2897 3133 5.415701 ACAAACAAAGCCGATATGATGAACT 59.584 36.000 0.00 0.00 0.00 3.01
2905 3141 4.518970 AGACACAACAAACAAAGCCGATAT 59.481 37.500 0.00 0.00 0.00 1.63
2911 3147 4.096732 ACAGAGACACAACAAACAAAGC 57.903 40.909 0.00 0.00 0.00 3.51
3155 3392 1.256361 TGGCCTGTCAGAGAGCTCAG 61.256 60.000 17.77 5.46 0.00 3.35
3379 3616 3.610821 CGCCATTTGATATGCATGGTCAG 60.611 47.826 10.16 3.43 39.88 3.51
3484 3721 5.235516 CGAACACTGGTAAGATTGTACCTT 58.764 41.667 3.24 0.00 43.52 3.50
3495 3732 3.215151 TCCAATTTGCGAACACTGGTAA 58.785 40.909 9.90 0.00 0.00 2.85
3552 3789 9.118300 CCTCTGCAAAACAAGAGATTAGATATT 57.882 33.333 1.29 0.00 0.00 1.28
3814 4055 4.973168 ACTGAACAGAAGTGCTTTGGATA 58.027 39.130 8.87 0.00 0.00 2.59
3815 4056 3.817647 GACTGAACAGAAGTGCTTTGGAT 59.182 43.478 8.87 0.00 0.00 3.41
3816 4057 3.206150 GACTGAACAGAAGTGCTTTGGA 58.794 45.455 8.87 0.00 0.00 3.53
3914 4155 3.204382 TCAAGGGTGAGTTTTCCTCCTTT 59.796 43.478 0.00 0.00 39.65 3.11
4089 4330 1.674359 ACGCACTTCCAACAATGTCA 58.326 45.000 0.00 0.00 0.00 3.58
4453 4696 3.628487 GGTACCAGTGCACAAGTAAACAA 59.372 43.478 21.04 0.00 0.00 2.83
4785 5039 5.650703 ACCTACTTAACTGTGCAAACTTGTT 59.349 36.000 0.00 0.00 0.00 2.83
5015 5269 0.512952 GCGTGCTGTAAACTGGACTG 59.487 55.000 9.31 5.17 34.83 3.51
5020 5274 1.921573 GCAACTGCGTGCTGTAAACTG 60.922 52.381 4.77 1.52 41.51 3.16
5032 5286 1.802136 TTGCCTTTTTCAGCAACTGCG 60.802 47.619 0.00 0.00 43.74 5.18
5056 5310 0.250467 TCACCAGAGCCTGCAAGTTC 60.250 55.000 0.00 0.00 0.00 3.01
5179 5433 5.046663 CCATAATTTTGGCAGGTAAGTTGGT 60.047 40.000 1.72 0.00 0.00 3.67
5182 5436 5.542251 ACACCATAATTTTGGCAGGTAAGTT 59.458 36.000 14.17 0.00 40.68 2.66
5209 5463 0.107017 CTGAAGGGTGCATACCTGGG 60.107 60.000 12.99 4.10 46.66 4.45
5378 5632 2.224606 ACAGTTCAGACTCGTACCGAA 58.775 47.619 0.00 0.00 34.74 4.30
5400 5654 4.096231 TGATCATGCGTAAAATGTTCAGGG 59.904 41.667 0.00 0.00 31.81 4.45
5401 5655 5.030295 GTGATCATGCGTAAAATGTTCAGG 58.970 41.667 0.00 0.00 35.48 3.86
5409 5667 4.495911 TGCAAAGTGATCATGCGTAAAA 57.504 36.364 13.57 0.00 42.91 1.52
5414 5672 3.921630 TGAAAATGCAAAGTGATCATGCG 59.078 39.130 13.57 0.00 42.91 4.73
5427 5685 0.447406 CGGCGATCAGTGAAAATGCA 59.553 50.000 0.00 0.00 0.00 3.96
5428 5686 0.447801 ACGGCGATCAGTGAAAATGC 59.552 50.000 16.62 0.00 0.00 3.56
5443 5701 3.723348 GACCAAAGACGCCACGGC 61.723 66.667 0.00 0.00 33.59 5.68
5445 5703 1.635663 GATGGACCAAAGACGCCACG 61.636 60.000 0.00 0.00 32.42 4.94
5448 5706 1.026718 CCTGATGGACCAAAGACGCC 61.027 60.000 0.00 0.00 34.57 5.68
5541 5799 2.981859 TTATGAACCCGAGGAAGCTC 57.018 50.000 0.00 0.00 0.00 4.09
5634 5892 6.213397 TCAGTCATCTCCTAGGTTTGAATTGA 59.787 38.462 9.08 13.21 0.00 2.57
5635 5893 6.409704 TCAGTCATCTCCTAGGTTTGAATTG 58.590 40.000 9.08 11.49 0.00 2.32
5636 5894 6.627087 TCAGTCATCTCCTAGGTTTGAATT 57.373 37.500 9.08 0.80 0.00 2.17
5637 5895 6.409005 CCATCAGTCATCTCCTAGGTTTGAAT 60.409 42.308 9.08 7.04 0.00 2.57
5638 5896 5.104776 CCATCAGTCATCTCCTAGGTTTGAA 60.105 44.000 9.08 0.00 0.00 2.69
5709 5967 1.347707 CTCCAGCCACCTCAAACAGTA 59.652 52.381 0.00 0.00 0.00 2.74
5733 5991 3.118454 CGGTCGCAAGCCATCGTT 61.118 61.111 0.00 0.00 33.86 3.85
5755 6015 0.391597 TGTCGGCTTCTCTTCCGTTT 59.608 50.000 0.47 0.00 45.44 3.60
5837 6100 4.270834 AGCAAGCACTAGTAGCTACTACA 58.729 43.478 26.36 12.25 42.53 2.74
6016 6430 4.636206 AGACAACAAAAGAAGGACACTGAC 59.364 41.667 0.00 0.00 0.00 3.51
6017 6431 4.843728 AGACAACAAAAGAAGGACACTGA 58.156 39.130 0.00 0.00 0.00 3.41
6018 6432 5.567138 AAGACAACAAAAGAAGGACACTG 57.433 39.130 0.00 0.00 0.00 3.66
6019 6433 7.696992 TTTAAGACAACAAAAGAAGGACACT 57.303 32.000 0.00 0.00 0.00 3.55
6022 6436 9.678941 CCTTATTTAAGACAACAAAAGAAGGAC 57.321 33.333 12.74 0.00 46.89 3.85
6040 6454 8.009622 TCCACGACATACATACACCTTATTTA 57.990 34.615 0.00 0.00 0.00 1.40
6064 6478 2.999355 GCACAACACAAGAGGAGATCTC 59.001 50.000 14.75 14.75 37.23 2.75
6065 6479 2.289945 GGCACAACACAAGAGGAGATCT 60.290 50.000 0.00 0.00 41.27 2.75
6066 6480 2.079925 GGCACAACACAAGAGGAGATC 58.920 52.381 0.00 0.00 0.00 2.75
6067 6481 1.421268 TGGCACAACACAAGAGGAGAT 59.579 47.619 0.00 0.00 31.92 2.75
6068 6482 0.836606 TGGCACAACACAAGAGGAGA 59.163 50.000 0.00 0.00 31.92 3.71
6069 6483 3.402186 TGGCACAACACAAGAGGAG 57.598 52.632 0.00 0.00 31.92 3.69
6146 8607 4.871933 AAGAAACCCATCCACAATCAAC 57.128 40.909 0.00 0.00 0.00 3.18
6160 8621 9.301153 CAACCATTACTTGCATAATAAGAAACC 57.699 33.333 0.00 0.00 0.00 3.27
6186 8647 7.061210 GCTATCATCAGATCACGTACACATAAC 59.939 40.741 0.00 0.00 35.67 1.89
6189 8650 5.465051 GCTATCATCAGATCACGTACACAT 58.535 41.667 0.00 0.00 35.67 3.21
6196 8657 3.674528 AAGGGCTATCATCAGATCACG 57.325 47.619 0.00 0.00 35.67 4.35
6217 8685 1.134401 CCGTCAGTTGGTCATAGGCAT 60.134 52.381 0.00 0.00 0.00 4.40
6242 8710 2.874086 CCTAACTGAATCATGCATGCGA 59.126 45.455 22.25 6.15 0.00 5.10
6243 8711 2.603892 GCCTAACTGAATCATGCATGCG 60.604 50.000 22.25 9.52 0.00 4.73
6244 8712 2.359848 TGCCTAACTGAATCATGCATGC 59.640 45.455 22.25 11.82 0.00 4.06
6245 8713 3.630769 ACTGCCTAACTGAATCATGCATG 59.369 43.478 21.07 21.07 0.00 4.06
6276 8744 2.936919 AGCATGAGGAGAAACACACA 57.063 45.000 0.00 0.00 0.00 3.72
6293 8761 2.083002 CTTCAAGGAGCCTTCTGAAGC 58.917 52.381 14.66 7.66 35.48 3.86
6294 8762 3.692257 TCTTCAAGGAGCCTTCTGAAG 57.308 47.619 18.54 18.54 39.98 3.02
6337 8805 2.254546 ACGACCTTTCTGTTCATGCA 57.745 45.000 0.00 0.00 0.00 3.96
6339 8807 6.539649 TTCTTTACGACCTTTCTGTTCATG 57.460 37.500 0.00 0.00 0.00 3.07
6354 8822 7.832769 TCCTTTTCCCCATATTTTTCTTTACG 58.167 34.615 0.00 0.00 0.00 3.18
6368 8836 0.189822 CAACCCCTTCCTTTTCCCCA 59.810 55.000 0.00 0.00 0.00 4.96
6376 8844 0.560688 TTTTGAGGCAACCCCTTCCT 59.439 50.000 0.00 0.00 46.60 3.36
6427 8895 5.655974 TGGATCCTTGCAATTTTATACTGCA 59.344 36.000 14.23 0.00 44.04 4.41
6462 8930 3.275999 ACGGTTGAATAAGGGTGCATAC 58.724 45.455 0.00 0.00 0.00 2.39
6463 8931 3.637911 ACGGTTGAATAAGGGTGCATA 57.362 42.857 0.00 0.00 0.00 3.14
6464 8932 2.507407 ACGGTTGAATAAGGGTGCAT 57.493 45.000 0.00 0.00 0.00 3.96
6465 8933 3.637911 ATACGGTTGAATAAGGGTGCA 57.362 42.857 0.00 0.00 0.00 4.57
6466 8934 4.510340 CAGTATACGGTTGAATAAGGGTGC 59.490 45.833 0.00 0.00 0.00 5.01
6467 8935 5.909477 TCAGTATACGGTTGAATAAGGGTG 58.091 41.667 2.86 0.00 0.00 4.61
6468 8936 6.549433 TTCAGTATACGGTTGAATAAGGGT 57.451 37.500 2.86 0.00 0.00 4.34
6469 8937 7.046033 ACTTTCAGTATACGGTTGAATAAGGG 58.954 38.462 6.81 0.99 31.54 3.95
6473 8941 9.715121 AGAAAACTTTCAGTATACGGTTGAATA 57.285 29.630 6.81 0.26 39.61 1.75
6474 8942 8.617290 AGAAAACTTTCAGTATACGGTTGAAT 57.383 30.769 6.81 0.00 39.61 2.57
6476 8944 7.711772 TCAAGAAAACTTTCAGTATACGGTTGA 59.288 33.333 2.86 0.00 39.61 3.18
6478 8946 8.441312 TTCAAGAAAACTTTCAGTATACGGTT 57.559 30.769 2.86 0.44 39.61 4.44
6479 8947 7.172703 CCTTCAAGAAAACTTTCAGTATACGGT 59.827 37.037 2.86 0.00 39.61 4.83
6480 8948 7.386848 TCCTTCAAGAAAACTTTCAGTATACGG 59.613 37.037 5.07 0.00 39.61 4.02
6481 8949 8.306680 TCCTTCAAGAAAACTTTCAGTATACG 57.693 34.615 5.07 0.00 39.61 3.06
6482 8950 9.274206 ACTCCTTCAAGAAAACTTTCAGTATAC 57.726 33.333 5.07 0.00 39.61 1.47
6486 8968 7.565680 TCTACTCCTTCAAGAAAACTTTCAGT 58.434 34.615 5.07 0.92 39.61 3.41
6488 8970 7.565680 ACTCTACTCCTTCAAGAAAACTTTCA 58.434 34.615 5.07 0.00 39.61 2.69
6504 8986 2.030628 GCGCATTCCTCTACTCTACTCC 60.031 54.545 0.30 0.00 0.00 3.85
6524 9006 4.513318 GTCTCCATGATACCAGCTTTTAGC 59.487 45.833 0.00 0.00 42.84 3.09
6525 9007 5.923204 AGTCTCCATGATACCAGCTTTTAG 58.077 41.667 0.00 0.00 0.00 1.85
6527 9009 4.851639 AGTCTCCATGATACCAGCTTTT 57.148 40.909 0.00 0.00 0.00 2.27
6528 9010 4.851639 AAGTCTCCATGATACCAGCTTT 57.148 40.909 0.00 0.00 0.00 3.51
6530 9012 3.521126 ACAAAGTCTCCATGATACCAGCT 59.479 43.478 0.00 0.00 0.00 4.24
6531 9013 3.878778 ACAAAGTCTCCATGATACCAGC 58.121 45.455 0.00 0.00 0.00 4.85
6532 9014 5.491070 TGAACAAAGTCTCCATGATACCAG 58.509 41.667 0.00 0.00 0.00 4.00
6533 9015 5.248248 TCTGAACAAAGTCTCCATGATACCA 59.752 40.000 0.00 0.00 0.00 3.25
6571 9058 9.620660 CGTATGCACTTTTTAGATTTTAGGTTT 57.379 29.630 0.00 0.00 0.00 3.27
6574 9061 7.665080 GCGTATGCACTTTTTAGATTTTAGG 57.335 36.000 0.89 0.00 42.15 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.