Multiple sequence alignment - TraesCS2D01G149600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G149600 chr2D 100.000 2330 0 0 1 2330 91223455 91221126 0.000000e+00 4303
1 TraesCS2D01G149600 chr5A 98.950 952 10 0 415 1366 700352785 700351834 0.000000e+00 1703
2 TraesCS2D01G149600 chr5A 99.163 239 1 1 1 239 700353012 700352775 1.650000e-116 429
3 TraesCS2D01G149600 chr5A 98.315 178 3 0 238 415 382333377 382333200 1.740000e-81 313
4 TraesCS2D01G149600 chr4B 98.634 952 13 0 415 1366 581154779 581153828 0.000000e+00 1687
5 TraesCS2D01G149600 chr4B 79.140 954 189 8 416 1365 29879616 29880563 0.000000e+00 651
6 TraesCS2D01G149600 chr4B 99.163 239 2 0 1 239 581155007 581154769 4.600000e-117 431
7 TraesCS2D01G149600 chr4B 98.333 180 3 0 238 417 526174226 526174405 1.340000e-82 316
8 TraesCS2D01G149600 chr2B 98.634 952 13 0 415 1366 712835116 712836067 0.000000e+00 1687
9 TraesCS2D01G149600 chr2B 99.163 239 2 0 1 239 712834888 712835126 4.600000e-117 431
10 TraesCS2D01G149600 chr3A 98.319 952 16 0 415 1366 714546917 714547868 0.000000e+00 1670
11 TraesCS2D01G149600 chr3A 88.918 388 34 6 1644 2030 101853533 101853154 9.750000e-129 470
12 TraesCS2D01G149600 chr3A 99.163 239 2 0 1 239 714546689 714546927 4.600000e-117 431
13 TraesCS2D01G149600 chr3A 85.824 261 31 4 2074 2330 101853156 101852898 2.950000e-69 272
14 TraesCS2D01G149600 chr3A 88.710 186 13 4 1464 1647 101858649 101858470 1.080000e-53 220
15 TraesCS2D01G149600 chrUn 98.691 917 12 0 437 1353 460081766 460080850 0.000000e+00 1628
16 TraesCS2D01G149600 chr1A 98.995 597 6 0 770 1366 488243371 488242775 0.000000e+00 1070
17 TraesCS2D01G149600 chr1A 97.175 531 14 1 835 1365 309749160 309749689 0.000000e+00 896
18 TraesCS2D01G149600 chr1A 98.370 184 3 0 238 421 576866172 576865989 8.030000e-85 324
19 TraesCS2D01G149600 chr3B 89.744 819 67 9 1525 2330 133788749 133787935 0.000000e+00 1031
20 TraesCS2D01G149600 chr2A 80.672 952 171 13 416 1364 768252300 768251359 0.000000e+00 726
21 TraesCS2D01G149600 chr2A 99.582 239 1 0 1 239 756810167 756809929 9.890000e-119 436
22 TraesCS2D01G149600 chr2A 98.876 178 2 0 238 415 100537807 100537630 3.740000e-83 318
23 TraesCS2D01G149600 chr2A 84.956 226 33 1 1 226 7858868 7859092 6.480000e-56 228
24 TraesCS2D01G149600 chr2A 83.544 237 39 0 1 237 768252529 768252293 3.010000e-54 222
25 TraesCS2D01G149600 chr5B 98.428 318 5 0 415 732 267882843 267882526 5.620000e-156 560
26 TraesCS2D01G149600 chr5B 99.163 239 2 0 1 239 267883071 267882833 4.600000e-117 431
27 TraesCS2D01G149600 chr7A 99.441 179 1 0 237 415 705487572 705487750 2.230000e-85 326
28 TraesCS2D01G149600 chr7A 98.876 178 2 0 238 415 51257100 51256923 3.740000e-83 318
29 TraesCS2D01G149600 chr7A 98.876 178 2 0 238 415 308301724 308301547 3.740000e-83 318
30 TraesCS2D01G149600 chr7A 98.315 178 3 0 238 415 51088471 51088294 1.740000e-81 313
31 TraesCS2D01G149600 chr7B 98.305 177 3 0 239 415 463532342 463532518 6.250000e-81 311
32 TraesCS2D01G149600 chr4A 84.332 217 34 0 3 219 523356209 523356425 1.810000e-51 213


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G149600 chr2D 91221126 91223455 2329 True 4303.0 4303 100.0000 1 2330 1 chr2D.!!$R1 2329
1 TraesCS2D01G149600 chr5A 700351834 700353012 1178 True 1066.0 1703 99.0565 1 1366 2 chr5A.!!$R2 1365
2 TraesCS2D01G149600 chr4B 581153828 581155007 1179 True 1059.0 1687 98.8985 1 1366 2 chr4B.!!$R1 1365
3 TraesCS2D01G149600 chr4B 29879616 29880563 947 False 651.0 651 79.1400 416 1365 1 chr4B.!!$F1 949
4 TraesCS2D01G149600 chr2B 712834888 712836067 1179 False 1059.0 1687 98.8985 1 1366 2 chr2B.!!$F1 1365
5 TraesCS2D01G149600 chr3A 714546689 714547868 1179 False 1050.5 1670 98.7410 1 1366 2 chr3A.!!$F1 1365
6 TraesCS2D01G149600 chr3A 101852898 101853533 635 True 371.0 470 87.3710 1644 2330 2 chr3A.!!$R2 686
7 TraesCS2D01G149600 chrUn 460080850 460081766 916 True 1628.0 1628 98.6910 437 1353 1 chrUn.!!$R1 916
8 TraesCS2D01G149600 chr1A 488242775 488243371 596 True 1070.0 1070 98.9950 770 1366 1 chr1A.!!$R1 596
9 TraesCS2D01G149600 chr1A 309749160 309749689 529 False 896.0 896 97.1750 835 1365 1 chr1A.!!$F1 530
10 TraesCS2D01G149600 chr3B 133787935 133788749 814 True 1031.0 1031 89.7440 1525 2330 1 chr3B.!!$R1 805
11 TraesCS2D01G149600 chr2A 768251359 768252529 1170 True 474.0 726 82.1080 1 1364 2 chr2A.!!$R3 1363
12 TraesCS2D01G149600 chr5B 267882526 267883071 545 True 495.5 560 98.7955 1 732 2 chr5B.!!$R1 731

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
281 282 0.04109 AAGTGGGGGCAAACTATGGG 59.959 55.0 0.0 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1381 1384 0.039708 GCAACTCACTGGAAGCTTGC 60.04 55.0 11.58 11.58 37.6 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
238 239 3.730215 TTTTATGGAGGCTAGCAACCA 57.270 42.857 26.30 26.30 36.83 3.67
239 240 3.281727 TTTATGGAGGCTAGCAACCAG 57.718 47.619 27.28 0.00 35.84 4.00
240 241 1.131638 TATGGAGGCTAGCAACCAGG 58.868 55.000 27.28 0.00 35.84 4.45
241 242 1.639635 ATGGAGGCTAGCAACCAGGG 61.640 60.000 27.28 0.00 35.84 4.45
242 243 2.592308 GAGGCTAGCAACCAGGGG 59.408 66.667 18.24 0.00 0.00 4.79
243 244 3.705934 GAGGCTAGCAACCAGGGGC 62.706 68.421 18.24 0.00 0.00 5.80
246 247 3.399181 CTAGCAACCAGGGGCGGA 61.399 66.667 0.00 0.00 34.54 5.54
247 248 3.682292 CTAGCAACCAGGGGCGGAC 62.682 68.421 0.00 0.00 34.54 4.79
259 260 3.875865 GGCGGACCCAGAAACTATT 57.124 52.632 0.00 0.00 0.00 1.73
260 261 1.664873 GGCGGACCCAGAAACTATTC 58.335 55.000 0.00 0.00 35.70 1.75
261 262 1.209747 GGCGGACCCAGAAACTATTCT 59.790 52.381 0.00 0.00 46.91 2.40
262 263 2.433239 GGCGGACCCAGAAACTATTCTA 59.567 50.000 0.00 0.00 44.11 2.10
263 264 3.118519 GGCGGACCCAGAAACTATTCTAA 60.119 47.826 0.00 0.00 44.11 2.10
264 265 4.120589 GCGGACCCAGAAACTATTCTAAG 58.879 47.826 0.00 0.00 44.11 2.18
265 266 4.382793 GCGGACCCAGAAACTATTCTAAGT 60.383 45.833 0.00 0.00 44.11 2.24
266 267 5.109903 CGGACCCAGAAACTATTCTAAGTG 58.890 45.833 0.00 0.00 44.11 3.16
267 268 5.429130 GGACCCAGAAACTATTCTAAGTGG 58.571 45.833 0.00 0.00 44.11 4.00
268 269 5.429130 GACCCAGAAACTATTCTAAGTGGG 58.571 45.833 10.44 10.44 45.90 4.61
269 270 4.227527 ACCCAGAAACTATTCTAAGTGGGG 59.772 45.833 14.47 11.63 45.26 4.96
270 271 4.385310 CCCAGAAACTATTCTAAGTGGGGG 60.385 50.000 0.00 0.00 44.11 5.40
271 272 4.200092 CAGAAACTATTCTAAGTGGGGGC 58.800 47.826 0.00 0.00 44.11 5.80
272 273 3.850173 AGAAACTATTCTAAGTGGGGGCA 59.150 43.478 0.00 0.00 44.11 5.36
273 274 4.291249 AGAAACTATTCTAAGTGGGGGCAA 59.709 41.667 0.00 0.00 44.11 4.52
274 275 4.668138 AACTATTCTAAGTGGGGGCAAA 57.332 40.909 0.00 0.00 0.00 3.68
275 276 3.964411 ACTATTCTAAGTGGGGGCAAAC 58.036 45.455 0.00 0.00 0.00 2.93
276 277 3.591977 ACTATTCTAAGTGGGGGCAAACT 59.408 43.478 0.00 0.00 0.00 2.66
277 278 4.786454 ACTATTCTAAGTGGGGGCAAACTA 59.214 41.667 0.00 0.00 0.00 2.24
278 279 4.881157 ATTCTAAGTGGGGGCAAACTAT 57.119 40.909 0.00 0.00 0.00 2.12
279 280 3.644966 TCTAAGTGGGGGCAAACTATG 57.355 47.619 0.00 0.00 0.00 2.23
280 281 2.241176 TCTAAGTGGGGGCAAACTATGG 59.759 50.000 0.00 0.00 0.00 2.74
281 282 0.041090 AAGTGGGGGCAAACTATGGG 59.959 55.000 0.00 0.00 0.00 4.00
282 283 0.849094 AGTGGGGGCAAACTATGGGA 60.849 55.000 0.00 0.00 0.00 4.37
283 284 0.395724 GTGGGGGCAAACTATGGGAG 60.396 60.000 0.00 0.00 0.00 4.30
284 285 0.849094 TGGGGGCAAACTATGGGAGT 60.849 55.000 0.00 0.00 41.56 3.85
285 286 0.395724 GGGGGCAAACTATGGGAGTG 60.396 60.000 0.00 0.00 38.87 3.51
286 287 0.395724 GGGGCAAACTATGGGAGTGG 60.396 60.000 0.00 0.00 38.87 4.00
287 288 0.395724 GGGCAAACTATGGGAGTGGG 60.396 60.000 0.00 0.00 38.87 4.61
288 289 0.395724 GGCAAACTATGGGAGTGGGG 60.396 60.000 0.00 0.00 38.87 4.96
289 290 0.395724 GCAAACTATGGGAGTGGGGG 60.396 60.000 0.00 0.00 38.87 5.40
290 291 0.395724 CAAACTATGGGAGTGGGGGC 60.396 60.000 0.00 0.00 38.87 5.80
291 292 0.849094 AAACTATGGGAGTGGGGGCA 60.849 55.000 0.00 0.00 38.87 5.36
292 293 0.627469 AACTATGGGAGTGGGGGCAT 60.627 55.000 0.00 0.00 38.87 4.40
293 294 0.270699 ACTATGGGAGTGGGGGCATA 59.729 55.000 0.00 0.00 36.87 3.14
294 295 0.693049 CTATGGGAGTGGGGGCATAC 59.307 60.000 0.00 0.00 0.00 2.39
295 296 0.270699 TATGGGAGTGGGGGCATACT 59.729 55.000 0.00 0.00 0.00 2.12
296 297 0.627469 ATGGGAGTGGGGGCATACTT 60.627 55.000 0.00 0.00 0.00 2.24
297 298 0.849094 TGGGAGTGGGGGCATACTTT 60.849 55.000 0.00 0.00 0.00 2.66
298 299 0.395724 GGGAGTGGGGGCATACTTTG 60.396 60.000 0.00 0.00 0.00 2.77
299 300 0.331616 GGAGTGGGGGCATACTTTGT 59.668 55.000 0.00 0.00 0.00 2.83
300 301 1.562475 GGAGTGGGGGCATACTTTGTA 59.438 52.381 0.00 0.00 0.00 2.41
301 302 2.640184 GAGTGGGGGCATACTTTGTAC 58.360 52.381 0.00 0.00 0.00 2.90
302 303 1.989586 AGTGGGGGCATACTTTGTACA 59.010 47.619 0.00 0.00 0.00 2.90
303 304 2.377193 AGTGGGGGCATACTTTGTACAA 59.623 45.455 3.59 3.59 0.00 2.41
304 305 3.158676 GTGGGGGCATACTTTGTACAAA 58.841 45.455 19.53 19.53 0.00 2.83
305 306 3.767131 GTGGGGGCATACTTTGTACAAAT 59.233 43.478 20.83 13.33 0.00 2.32
306 307 4.221924 GTGGGGGCATACTTTGTACAAATT 59.778 41.667 20.83 17.51 0.00 1.82
307 308 4.464597 TGGGGGCATACTTTGTACAAATTC 59.535 41.667 20.83 8.66 0.00 2.17
308 309 4.464597 GGGGGCATACTTTGTACAAATTCA 59.535 41.667 20.83 9.78 0.00 2.57
309 310 5.407502 GGGGCATACTTTGTACAAATTCAC 58.592 41.667 20.83 9.97 0.00 3.18
310 311 5.047660 GGGGCATACTTTGTACAAATTCACA 60.048 40.000 20.83 2.10 0.00 3.58
311 312 6.350949 GGGGCATACTTTGTACAAATTCACAT 60.351 38.462 20.83 4.33 0.00 3.21
312 313 7.147983 GGGGCATACTTTGTACAAATTCACATA 60.148 37.037 20.83 7.91 0.00 2.29
313 314 7.915397 GGGCATACTTTGTACAAATTCACATAG 59.085 37.037 20.83 9.48 32.16 2.23
314 315 8.458843 GGCATACTTTGTACAAATTCACATAGT 58.541 33.333 20.83 14.49 39.34 2.12
315 316 9.840427 GCATACTTTGTACAAATTCACATAGTT 57.160 29.630 20.83 2.62 37.83 2.24
319 320 9.528018 ACTTTGTACAAATTCACATAGTTTTGG 57.472 29.630 20.83 6.53 34.58 3.28
320 321 7.938563 TTGTACAAATTCACATAGTTTTGGC 57.061 32.000 5.64 0.00 34.23 4.52
321 322 7.043961 TGTACAAATTCACATAGTTTTGGCA 57.956 32.000 0.00 0.00 34.23 4.92
322 323 7.492524 TGTACAAATTCACATAGTTTTGGCAA 58.507 30.769 0.00 0.00 34.23 4.52
323 324 7.981789 TGTACAAATTCACATAGTTTTGGCAAA 59.018 29.630 8.93 8.93 34.23 3.68
324 325 7.856145 ACAAATTCACATAGTTTTGGCAAAA 57.144 28.000 20.81 20.81 34.23 2.44
325 326 8.273780 ACAAATTCACATAGTTTTGGCAAAAA 57.726 26.923 25.60 12.83 34.23 1.94
326 327 8.901793 ACAAATTCACATAGTTTTGGCAAAAAT 58.098 25.926 26.05 26.05 37.59 1.82
327 328 9.733219 CAAATTCACATAGTTTTGGCAAAAATT 57.267 25.926 27.60 19.79 37.59 1.82
329 330 9.949174 AATTCACATAGTTTTGGCAAAAATTTC 57.051 25.926 27.60 15.32 37.59 2.17
330 331 8.729805 TTCACATAGTTTTGGCAAAAATTTCT 57.270 26.923 27.60 20.76 37.59 2.52
331 332 8.140677 TCACATAGTTTTGGCAAAAATTTCTG 57.859 30.769 27.60 22.61 37.59 3.02
332 333 7.984050 TCACATAGTTTTGGCAAAAATTTCTGA 59.016 29.630 27.60 19.92 37.59 3.27
333 334 8.610896 CACATAGTTTTGGCAAAAATTTCTGAA 58.389 29.630 27.60 11.53 37.59 3.02
334 335 9.171877 ACATAGTTTTGGCAAAAATTTCTGAAA 57.828 25.926 27.60 10.85 37.59 2.69
373 374 7.874940 TCACTGAAGTTTCATATTTTGAGTGG 58.125 34.615 0.00 0.00 36.46 4.00
374 375 7.040478 TCACTGAAGTTTCATATTTTGAGTGGG 60.040 37.037 0.00 0.00 36.46 4.61
375 376 6.209391 ACTGAAGTTTCATATTTTGAGTGGGG 59.791 38.462 0.00 0.00 36.46 4.96
376 377 6.074648 TGAAGTTTCATATTTTGAGTGGGGT 58.925 36.000 0.00 0.00 35.27 4.95
377 378 6.208599 TGAAGTTTCATATTTTGAGTGGGGTC 59.791 38.462 0.00 0.00 35.27 4.46
378 379 5.016831 AGTTTCATATTTTGAGTGGGGTCC 58.983 41.667 0.00 0.00 35.27 4.46
379 380 4.946160 TTCATATTTTGAGTGGGGTCCT 57.054 40.909 0.00 0.00 35.27 3.85
380 381 6.011981 AGTTTCATATTTTGAGTGGGGTCCTA 60.012 38.462 0.00 0.00 35.27 2.94
381 382 5.630415 TCATATTTTGAGTGGGGTCCTAG 57.370 43.478 0.00 0.00 0.00 3.02
382 383 4.412199 TCATATTTTGAGTGGGGTCCTAGG 59.588 45.833 0.82 0.82 0.00 3.02
383 384 0.696501 TTTTGAGTGGGGTCCTAGGC 59.303 55.000 2.96 0.00 0.00 3.93
384 385 1.205460 TTTGAGTGGGGTCCTAGGCC 61.205 60.000 2.96 8.84 0.00 5.19
385 386 2.768769 GAGTGGGGTCCTAGGCCC 60.769 72.222 25.39 25.39 45.35 5.80
390 391 4.433194 GGGTCCTAGGCCCCCACT 62.433 72.222 17.92 0.00 40.26 4.00
391 392 2.768769 GGTCCTAGGCCCCCACTC 60.769 72.222 2.96 0.00 0.00 3.51
392 393 2.768769 GTCCTAGGCCCCCACTCC 60.769 72.222 2.96 0.00 0.00 3.85
393 394 2.958739 TCCTAGGCCCCCACTCCT 60.959 66.667 2.96 0.00 36.51 3.69
394 395 1.627777 TCCTAGGCCCCCACTCCTA 60.628 63.158 2.96 0.00 34.02 2.94
395 396 1.010602 TCCTAGGCCCCCACTCCTAT 61.011 60.000 2.96 0.00 34.69 2.57
396 397 0.838122 CCTAGGCCCCCACTCCTATG 60.838 65.000 0.00 0.00 34.69 2.23
397 398 0.191064 CTAGGCCCCCACTCCTATGA 59.809 60.000 0.00 0.00 34.69 2.15
398 399 0.645496 TAGGCCCCCACTCCTATGAA 59.355 55.000 0.00 0.00 34.02 2.57
399 400 0.988678 AGGCCCCCACTCCTATGAAC 60.989 60.000 0.00 0.00 0.00 3.18
400 401 1.146263 GCCCCCACTCCTATGAACG 59.854 63.158 0.00 0.00 0.00 3.95
401 402 1.623542 GCCCCCACTCCTATGAACGT 61.624 60.000 0.00 0.00 0.00 3.99
402 403 0.178068 CCCCCACTCCTATGAACGTG 59.822 60.000 0.00 0.00 0.00 4.49
403 404 0.178068 CCCCACTCCTATGAACGTGG 59.822 60.000 0.00 0.00 44.98 4.94
404 405 3.760693 CCACTCCTATGAACGTGGG 57.239 57.895 0.00 0.00 42.40 4.61
405 406 0.902531 CCACTCCTATGAACGTGGGT 59.097 55.000 0.00 0.00 42.40 4.51
406 407 1.134788 CCACTCCTATGAACGTGGGTC 60.135 57.143 0.00 0.00 42.40 4.46
407 408 1.134788 CACTCCTATGAACGTGGGTCC 60.135 57.143 0.00 0.00 0.00 4.46
408 409 0.102481 CTCCTATGAACGTGGGTCCG 59.898 60.000 0.00 0.00 0.00 4.79
409 410 1.520787 CCTATGAACGTGGGTCCGC 60.521 63.158 0.00 0.00 0.00 5.54
410 411 1.520787 CTATGAACGTGGGTCCGCC 60.521 63.158 0.00 0.00 0.00 6.13
465 466 7.117236 CGAACAAAGCTACAAAACAGAGGTATA 59.883 37.037 0.00 0.00 0.00 1.47
608 611 3.885297 CAGCTAATCCCCTGTGTTAATGG 59.115 47.826 0.00 0.00 0.00 3.16
649 652 9.426534 AAGAAATTATTAATTTGAGGGAGGAGG 57.573 33.333 17.01 0.00 40.97 4.30
752 755 6.909357 CCATCGAATGAAATTTGCTCTTCTAC 59.091 38.462 0.00 0.00 36.07 2.59
1146 1149 9.643693 GCCATTTTCAGAGAGATTAAATTTCAA 57.356 29.630 0.00 0.00 0.00 2.69
1214 1217 0.462375 TGTAACCGAGTGGCGCATAT 59.538 50.000 10.83 0.00 39.70 1.78
1381 1384 1.734163 AAAAGGAATCGTACTGCCCG 58.266 50.000 0.00 0.00 0.00 6.13
1382 1385 0.743345 AAAGGAATCGTACTGCCCGC 60.743 55.000 0.00 0.00 0.00 6.13
1383 1386 1.895020 AAGGAATCGTACTGCCCGCA 61.895 55.000 0.00 0.00 0.00 5.69
1384 1387 1.448893 GGAATCGTACTGCCCGCAA 60.449 57.895 0.00 0.00 0.00 4.85
1385 1388 1.429148 GGAATCGTACTGCCCGCAAG 61.429 60.000 0.00 0.00 0.00 4.01
1386 1389 2.036764 GAATCGTACTGCCCGCAAGC 62.037 60.000 0.00 0.00 0.00 4.01
1387 1390 2.521958 AATCGTACTGCCCGCAAGCT 62.522 55.000 0.00 0.00 0.00 3.74
1388 1391 2.521958 ATCGTACTGCCCGCAAGCTT 62.522 55.000 0.00 0.00 0.00 3.74
1389 1392 2.740714 CGTACTGCCCGCAAGCTTC 61.741 63.158 0.00 0.00 0.00 3.86
1390 1393 2.046314 TACTGCCCGCAAGCTTCC 60.046 61.111 0.00 0.00 0.00 3.46
1391 1394 2.889606 TACTGCCCGCAAGCTTCCA 61.890 57.895 0.00 0.00 0.00 3.53
1392 1395 2.803155 TACTGCCCGCAAGCTTCCAG 62.803 60.000 0.00 1.18 0.00 3.86
1393 1396 4.269523 TGCCCGCAAGCTTCCAGT 62.270 61.111 0.00 0.00 0.00 4.00
1394 1397 3.741476 GCCCGCAAGCTTCCAGTG 61.741 66.667 0.00 0.00 0.00 3.66
1395 1398 2.032528 CCCGCAAGCTTCCAGTGA 59.967 61.111 0.00 0.00 0.00 3.41
1396 1399 2.037136 CCCGCAAGCTTCCAGTGAG 61.037 63.158 0.00 0.00 0.00 3.51
1397 1400 1.302033 CCGCAAGCTTCCAGTGAGT 60.302 57.895 0.00 0.00 0.00 3.41
1398 1401 0.886490 CCGCAAGCTTCCAGTGAGTT 60.886 55.000 0.00 0.00 0.00 3.01
1399 1402 0.236711 CGCAAGCTTCCAGTGAGTTG 59.763 55.000 0.00 0.00 0.00 3.16
1400 1403 0.039708 GCAAGCTTCCAGTGAGTTGC 60.040 55.000 0.00 0.00 34.10 4.17
1401 1404 0.595095 CAAGCTTCCAGTGAGTTGCC 59.405 55.000 0.00 0.00 0.00 4.52
1402 1405 0.475906 AAGCTTCCAGTGAGTTGCCT 59.524 50.000 0.00 0.00 0.00 4.75
1403 1406 0.036022 AGCTTCCAGTGAGTTGCCTC 59.964 55.000 0.00 0.00 38.27 4.70
1404 1407 0.250467 GCTTCCAGTGAGTTGCCTCA 60.250 55.000 0.00 0.00 45.44 3.86
1413 1416 1.135139 TGAGTTGCCTCATCTCGTAGC 59.865 52.381 0.00 0.00 42.80 3.58
1414 1417 0.461961 AGTTGCCTCATCTCGTAGCC 59.538 55.000 0.00 0.00 0.00 3.93
1415 1418 0.461961 GTTGCCTCATCTCGTAGCCT 59.538 55.000 0.00 0.00 0.00 4.58
1416 1419 1.681793 GTTGCCTCATCTCGTAGCCTA 59.318 52.381 0.00 0.00 0.00 3.93
1417 1420 1.610363 TGCCTCATCTCGTAGCCTAG 58.390 55.000 0.00 0.00 0.00 3.02
1418 1421 0.242555 GCCTCATCTCGTAGCCTAGC 59.757 60.000 0.00 0.00 0.00 3.42
1419 1422 0.519519 CCTCATCTCGTAGCCTAGCG 59.480 60.000 0.00 0.00 0.00 4.26
1420 1423 1.514003 CTCATCTCGTAGCCTAGCGA 58.486 55.000 0.00 0.00 35.70 4.93
1421 1424 2.080693 CTCATCTCGTAGCCTAGCGAT 58.919 52.381 0.00 0.00 36.50 4.58
1422 1425 1.807142 TCATCTCGTAGCCTAGCGATG 59.193 52.381 0.00 0.00 36.50 3.84
1423 1426 1.807142 CATCTCGTAGCCTAGCGATGA 59.193 52.381 0.00 0.00 36.50 2.92
1424 1427 1.963172 TCTCGTAGCCTAGCGATGAA 58.037 50.000 0.00 0.00 36.50 2.57
1425 1428 1.602851 TCTCGTAGCCTAGCGATGAAC 59.397 52.381 0.00 0.00 36.50 3.18
1426 1429 0.666913 TCGTAGCCTAGCGATGAACC 59.333 55.000 0.00 0.00 31.76 3.62
1427 1430 0.318784 CGTAGCCTAGCGATGAACCC 60.319 60.000 0.00 0.00 0.00 4.11
1428 1431 0.750850 GTAGCCTAGCGATGAACCCA 59.249 55.000 0.00 0.00 0.00 4.51
1429 1432 1.344763 GTAGCCTAGCGATGAACCCAT 59.655 52.381 0.00 0.00 35.29 4.00
1430 1433 0.839946 AGCCTAGCGATGAACCCATT 59.160 50.000 0.00 0.00 32.09 3.16
1431 1434 2.047061 AGCCTAGCGATGAACCCATTA 58.953 47.619 0.00 0.00 32.09 1.90
1432 1435 2.438021 AGCCTAGCGATGAACCCATTAA 59.562 45.455 0.00 0.00 32.09 1.40
1433 1436 2.548480 GCCTAGCGATGAACCCATTAAC 59.452 50.000 0.00 0.00 32.09 2.01
1434 1437 2.800544 CCTAGCGATGAACCCATTAACG 59.199 50.000 0.00 0.00 32.09 3.18
1435 1438 1.663695 AGCGATGAACCCATTAACGG 58.336 50.000 0.00 0.00 32.09 4.44
1436 1439 1.065709 AGCGATGAACCCATTAACGGT 60.066 47.619 0.00 0.00 32.09 4.83
1437 1440 1.741145 GCGATGAACCCATTAACGGTT 59.259 47.619 8.24 8.24 46.41 4.44
1438 1441 2.162809 GCGATGAACCCATTAACGGTTT 59.837 45.455 9.57 0.00 43.75 3.27
1439 1442 3.366577 GCGATGAACCCATTAACGGTTTT 60.367 43.478 9.57 2.58 43.75 2.43
1440 1443 4.800784 CGATGAACCCATTAACGGTTTTT 58.199 39.130 9.57 2.30 43.75 1.94
1441 1444 4.619336 CGATGAACCCATTAACGGTTTTTG 59.381 41.667 9.57 0.00 43.75 2.44
1442 1445 4.323553 TGAACCCATTAACGGTTTTTGG 57.676 40.909 9.57 12.41 43.75 3.28
1443 1446 3.705072 TGAACCCATTAACGGTTTTTGGT 59.295 39.130 16.07 8.75 43.75 3.67
1444 1447 4.891756 TGAACCCATTAACGGTTTTTGGTA 59.108 37.500 16.07 3.01 43.75 3.25
1445 1448 5.539193 TGAACCCATTAACGGTTTTTGGTAT 59.461 36.000 16.07 7.96 43.75 2.73
1446 1449 5.648178 ACCCATTAACGGTTTTTGGTATC 57.352 39.130 16.07 0.00 0.00 2.24
1447 1450 4.156373 ACCCATTAACGGTTTTTGGTATCG 59.844 41.667 16.07 7.27 0.00 2.92
1448 1451 4.395542 CCCATTAACGGTTTTTGGTATCGA 59.604 41.667 16.07 0.00 0.00 3.59
1449 1452 5.106237 CCCATTAACGGTTTTTGGTATCGAA 60.106 40.000 16.07 0.00 0.00 3.71
1450 1453 6.025280 CCATTAACGGTTTTTGGTATCGAAG 58.975 40.000 0.00 0.00 0.00 3.79
1451 1454 6.128227 CCATTAACGGTTTTTGGTATCGAAGA 60.128 38.462 0.00 0.00 45.75 2.87
1452 1455 7.414762 CCATTAACGGTTTTTGGTATCGAAGAT 60.415 37.037 0.00 0.00 45.12 2.40
1453 1456 5.541098 AACGGTTTTTGGTATCGAAGATC 57.459 39.130 0.00 0.00 45.12 2.75
1454 1457 3.937079 ACGGTTTTTGGTATCGAAGATCC 59.063 43.478 0.00 0.00 45.12 3.36
1455 1458 3.311596 CGGTTTTTGGTATCGAAGATCCC 59.688 47.826 0.00 0.00 45.12 3.85
1456 1459 3.630769 GGTTTTTGGTATCGAAGATCCCC 59.369 47.826 0.00 0.00 45.12 4.81
1457 1460 2.902705 TTTGGTATCGAAGATCCCCG 57.097 50.000 0.00 0.00 45.12 5.73
1458 1461 1.045407 TTGGTATCGAAGATCCCCGG 58.955 55.000 0.00 0.00 45.12 5.73
1459 1462 0.105862 TGGTATCGAAGATCCCCGGT 60.106 55.000 0.00 0.60 45.12 5.28
1460 1463 1.046204 GGTATCGAAGATCCCCGGTT 58.954 55.000 0.00 0.00 45.12 4.44
1461 1464 1.415289 GGTATCGAAGATCCCCGGTTT 59.585 52.381 0.00 0.00 45.12 3.27
1462 1465 2.629617 GGTATCGAAGATCCCCGGTTTA 59.370 50.000 0.00 0.00 45.12 2.01
1463 1466 3.260128 GGTATCGAAGATCCCCGGTTTAT 59.740 47.826 0.00 0.00 45.12 1.40
1464 1467 3.679824 ATCGAAGATCCCCGGTTTATC 57.320 47.619 0.00 0.00 45.12 1.75
1465 1468 2.674420 TCGAAGATCCCCGGTTTATCT 58.326 47.619 0.00 2.45 0.00 1.98
1466 1469 2.626743 TCGAAGATCCCCGGTTTATCTC 59.373 50.000 0.00 0.16 0.00 2.75
1467 1470 2.364324 CGAAGATCCCCGGTTTATCTCA 59.636 50.000 0.00 0.00 0.00 3.27
1468 1471 3.729966 GAAGATCCCCGGTTTATCTCAC 58.270 50.000 0.00 0.89 0.00 3.51
1469 1472 1.687123 AGATCCCCGGTTTATCTCACG 59.313 52.381 0.00 0.00 0.00 4.35
1470 1473 0.106149 ATCCCCGGTTTATCTCACGC 59.894 55.000 0.00 0.00 0.00 5.34
1471 1474 1.523032 CCCCGGTTTATCTCACGCC 60.523 63.158 0.00 0.00 0.00 5.68
1472 1475 1.219664 CCCGGTTTATCTCACGCCA 59.780 57.895 0.00 0.00 0.00 5.69
1473 1476 0.810031 CCCGGTTTATCTCACGCCAG 60.810 60.000 0.00 0.00 0.00 4.85
1474 1477 0.174845 CCGGTTTATCTCACGCCAGA 59.825 55.000 0.00 0.00 0.00 3.86
1475 1478 1.202533 CCGGTTTATCTCACGCCAGAT 60.203 52.381 0.00 2.50 36.97 2.90
1476 1479 2.128035 CGGTTTATCTCACGCCAGATC 58.872 52.381 0.05 0.00 34.75 2.75
1477 1480 2.223829 CGGTTTATCTCACGCCAGATCT 60.224 50.000 0.05 0.00 34.75 2.75
1478 1481 3.385577 GGTTTATCTCACGCCAGATCTC 58.614 50.000 0.00 0.00 34.75 2.75
1479 1482 3.068873 GGTTTATCTCACGCCAGATCTCT 59.931 47.826 0.00 0.00 34.75 3.10
1480 1483 4.295051 GTTTATCTCACGCCAGATCTCTC 58.705 47.826 0.00 0.00 34.75 3.20
1481 1484 2.064434 ATCTCACGCCAGATCTCTCA 57.936 50.000 0.00 0.00 0.00 3.27
1482 1485 2.064434 TCTCACGCCAGATCTCTCAT 57.936 50.000 0.00 0.00 0.00 2.90
1483 1486 1.952990 TCTCACGCCAGATCTCTCATC 59.047 52.381 0.00 0.00 0.00 2.92
1484 1487 1.680207 CTCACGCCAGATCTCTCATCA 59.320 52.381 0.00 0.00 0.00 3.07
1485 1488 1.406898 TCACGCCAGATCTCTCATCAC 59.593 52.381 0.00 0.00 0.00 3.06
1486 1489 1.135721 CACGCCAGATCTCTCATCACA 59.864 52.381 0.00 0.00 0.00 3.58
1487 1490 1.135915 ACGCCAGATCTCTCATCACAC 59.864 52.381 0.00 0.00 0.00 3.82
1488 1491 1.135721 CGCCAGATCTCTCATCACACA 59.864 52.381 0.00 0.00 0.00 3.72
1489 1492 2.417787 CGCCAGATCTCTCATCACACAA 60.418 50.000 0.00 0.00 0.00 3.33
1490 1493 3.196463 GCCAGATCTCTCATCACACAAG 58.804 50.000 0.00 0.00 0.00 3.16
1491 1494 3.196463 CCAGATCTCTCATCACACAAGC 58.804 50.000 0.00 0.00 0.00 4.01
1492 1495 2.858941 CAGATCTCTCATCACACAAGCG 59.141 50.000 0.00 0.00 0.00 4.68
1493 1496 1.592081 GATCTCTCATCACACAAGCGC 59.408 52.381 0.00 0.00 0.00 5.92
1494 1497 0.733909 TCTCTCATCACACAAGCGCG 60.734 55.000 0.00 0.00 0.00 6.86
1495 1498 0.733909 CTCTCATCACACAAGCGCGA 60.734 55.000 12.10 0.00 0.00 5.87
1496 1499 0.733909 TCTCATCACACAAGCGCGAG 60.734 55.000 12.10 0.01 0.00 5.03
1497 1500 0.733909 CTCATCACACAAGCGCGAGA 60.734 55.000 12.10 0.00 0.00 4.04
1498 1501 0.319469 TCATCACACAAGCGCGAGAA 60.319 50.000 12.10 0.00 0.00 2.87
1499 1502 0.094216 CATCACACAAGCGCGAGAAG 59.906 55.000 12.10 0.00 0.00 2.85
1500 1503 1.630244 ATCACACAAGCGCGAGAAGC 61.630 55.000 12.10 0.00 43.95 3.86
1510 1513 2.292803 GCGAGAAGCGACTTGATCC 58.707 57.895 4.94 0.00 44.57 3.36
1511 1514 1.148759 GCGAGAAGCGACTTGATCCC 61.149 60.000 4.94 0.00 44.57 3.85
1512 1515 0.457851 CGAGAAGCGACTTGATCCCT 59.542 55.000 0.00 0.00 44.57 4.20
1513 1516 1.535015 CGAGAAGCGACTTGATCCCTC 60.535 57.143 0.00 0.00 44.57 4.30
1514 1517 1.754226 GAGAAGCGACTTGATCCCTCT 59.246 52.381 0.00 0.00 0.00 3.69
1515 1518 1.754226 AGAAGCGACTTGATCCCTCTC 59.246 52.381 0.00 0.00 0.00 3.20
1516 1519 0.827368 AAGCGACTTGATCCCTCTCC 59.173 55.000 0.00 0.00 0.00 3.71
1517 1520 1.045911 AGCGACTTGATCCCTCTCCC 61.046 60.000 0.00 0.00 0.00 4.30
1518 1521 1.045911 GCGACTTGATCCCTCTCCCT 61.046 60.000 0.00 0.00 0.00 4.20
1519 1522 0.749649 CGACTTGATCCCTCTCCCTG 59.250 60.000 0.00 0.00 0.00 4.45
1520 1523 1.872773 GACTTGATCCCTCTCCCTGT 58.127 55.000 0.00 0.00 0.00 4.00
1521 1524 2.192263 GACTTGATCCCTCTCCCTGTT 58.808 52.381 0.00 0.00 0.00 3.16
1522 1525 1.912043 ACTTGATCCCTCTCCCTGTTG 59.088 52.381 0.00 0.00 0.00 3.33
1523 1526 2.191400 CTTGATCCCTCTCCCTGTTGA 58.809 52.381 0.00 0.00 0.00 3.18
1532 1535 3.054875 CCTCTCCCTGTTGATGTTGATGA 60.055 47.826 0.00 0.00 0.00 2.92
1556 1559 0.809241 GCTCTCTCGTGCATGAAGGG 60.809 60.000 10.41 11.06 0.00 3.95
1557 1560 0.809241 CTCTCTCGTGCATGAAGGGC 60.809 60.000 10.41 0.00 0.00 5.19
1559 1562 1.078918 TCTCGTGCATGAAGGGCAG 60.079 57.895 10.41 0.00 42.85 4.85
1603 1606 2.290134 CCAGCCAGGATACATGATGGAG 60.290 54.545 0.00 0.00 45.51 3.86
1609 1612 3.813724 CAGGATACATGATGGAGTTGCAG 59.186 47.826 0.00 0.00 41.41 4.41
1617 1620 0.815734 ATGGAGTTGCAGCATCTTGC 59.184 50.000 7.43 0.00 45.46 4.01
1679 1684 0.726827 TTCGAAAGGATGTGCGATGC 59.273 50.000 0.00 0.00 32.38 3.91
1718 1723 1.967779 GCAGAGGGGCCAAAAGTAAAA 59.032 47.619 4.39 0.00 0.00 1.52
1719 1724 2.367241 GCAGAGGGGCCAAAAGTAAAAA 59.633 45.455 4.39 0.00 0.00 1.94
1771 1776 7.974243 TCAATGATCAAAATATTGCGTTGAG 57.026 32.000 0.00 0.00 33.44 3.02
1816 1821 8.782137 AAGTTAATACCTTTCATGGCCATAAT 57.218 30.769 20.30 0.00 0.00 1.28
1826 1831 4.314961 TCATGGCCATAATACATCGACAC 58.685 43.478 20.30 0.00 0.00 3.67
1837 1842 2.239400 ACATCGACACTGAGTTGAGGA 58.761 47.619 12.88 0.00 43.53 3.71
1859 1864 4.511527 AGCATGCACATATATAGCAGGAC 58.488 43.478 21.98 14.47 42.08 3.85
1873 1879 3.477530 AGCAGGACAAAAGAGGTAACAC 58.522 45.455 0.00 0.00 41.41 3.32
1887 1893 6.299141 AGAGGTAACACCATTAGCATATTGG 58.701 40.000 0.00 0.00 45.27 3.16
1889 1895 6.299141 AGGTAACACCATTAGCATATTGGAG 58.701 40.000 5.06 0.71 43.33 3.86
1894 1900 6.294473 ACACCATTAGCATATTGGAGAAGAG 58.706 40.000 5.06 0.00 43.10 2.85
1900 1906 5.822132 AGCATATTGGAGAAGAGCTACAT 57.178 39.130 0.00 0.00 37.29 2.29
1903 1909 7.915930 AGCATATTGGAGAAGAGCTACATTAT 58.084 34.615 0.00 0.00 37.29 1.28
1984 1994 1.545582 ACATGGTGCAAGTTGGCATAC 59.454 47.619 4.75 2.41 46.92 2.39
1993 2003 3.128764 GCAAGTTGGCATACTTAACCTCC 59.871 47.826 4.75 0.00 36.24 4.30
2012 2022 2.297033 TCCCAAAGAACTGCATTTGAGC 59.703 45.455 11.23 0.00 38.42 4.26
2030 2040 8.533965 CATTTGAGCGGATAACAATTAACATTG 58.466 33.333 0.00 0.00 44.90 2.82
2055 2065 8.673711 TGGAGTAAATAATTCTGGAACATTTCG 58.326 33.333 7.54 0.00 38.20 3.46
2056 2066 8.674607 GGAGTAAATAATTCTGGAACATTTCGT 58.325 33.333 7.54 0.00 38.20 3.85
2103 2113 1.000827 ACGGAGATAAGATCTGCAGCG 60.001 52.381 9.47 5.13 46.71 5.18
2108 2118 0.467384 ATAAGATCTGCAGCGCACCT 59.533 50.000 11.47 0.00 33.79 4.00
2117 2127 0.585357 GCAGCGCACCTCAATATCTG 59.415 55.000 11.47 0.00 0.00 2.90
2131 2141 7.086376 CCTCAATATCTGTTGTTTGTCCTTTG 58.914 38.462 0.00 0.00 0.00 2.77
2138 2148 5.652014 TCTGTTGTTTGTCCTTTGAGAATGT 59.348 36.000 0.00 0.00 0.00 2.71
2143 2153 2.766313 TGTCCTTTGAGAATGTGTCCG 58.234 47.619 0.00 0.00 0.00 4.79
2149 2159 2.299993 TGAGAATGTGTCCGCTCATC 57.700 50.000 0.00 0.00 32.85 2.92
2152 2162 1.827344 AGAATGTGTCCGCTCATCTCA 59.173 47.619 0.00 0.00 0.00 3.27
2165 2177 4.525686 GCTCATCTCAAATGCTCGAAATC 58.474 43.478 0.00 0.00 0.00 2.17
2200 2212 9.522804 AATCTTTAAACAAAATCACAACGCTAA 57.477 25.926 0.00 0.00 0.00 3.09
2299 2316 1.116308 GGAGAAGACTGGGTAGCTCC 58.884 60.000 0.00 0.00 35.63 4.70
2306 2323 0.608640 ACTGGGTAGCTCCGAAACAG 59.391 55.000 0.00 0.00 37.00 3.16
2312 2329 0.895530 TAGCTCCGAAACAGACCCTG 59.104 55.000 0.00 0.00 37.52 4.45
2315 2332 1.831652 CTCCGAAACAGACCCTGCCT 61.832 60.000 0.00 0.00 34.37 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 2.543012 CTCGAGCTGCACAATCTATTGG 59.457 50.000 0.00 0.00 41.96 3.16
241 242 1.209747 AGAATAGTTTCTGGGTCCGCC 59.790 52.381 0.00 0.00 40.74 6.13
242 243 2.693267 AGAATAGTTTCTGGGTCCGC 57.307 50.000 0.00 0.00 40.74 5.54
243 244 5.109903 CACTTAGAATAGTTTCTGGGTCCG 58.890 45.833 0.00 0.00 42.25 4.79
244 245 5.429130 CCACTTAGAATAGTTTCTGGGTCC 58.571 45.833 0.00 0.00 42.25 4.46
245 246 5.429130 CCCACTTAGAATAGTTTCTGGGTC 58.571 45.833 0.00 0.00 42.25 4.46
246 247 4.227527 CCCCACTTAGAATAGTTTCTGGGT 59.772 45.833 8.90 1.83 42.25 4.51
247 248 4.385310 CCCCCACTTAGAATAGTTTCTGGG 60.385 50.000 0.00 0.00 42.25 4.45
248 249 4.781934 CCCCCACTTAGAATAGTTTCTGG 58.218 47.826 0.00 0.00 42.25 3.86
249 250 4.200092 GCCCCCACTTAGAATAGTTTCTG 58.800 47.826 0.00 0.00 42.25 3.02
250 251 3.850173 TGCCCCCACTTAGAATAGTTTCT 59.150 43.478 0.00 0.00 44.44 2.52
251 252 4.230745 TGCCCCCACTTAGAATAGTTTC 57.769 45.455 0.00 0.00 0.00 2.78
252 253 4.668138 TTGCCCCCACTTAGAATAGTTT 57.332 40.909 0.00 0.00 0.00 2.66
253 254 4.044191 AGTTTGCCCCCACTTAGAATAGTT 59.956 41.667 0.00 0.00 0.00 2.24
254 255 3.591977 AGTTTGCCCCCACTTAGAATAGT 59.408 43.478 0.00 0.00 0.00 2.12
255 256 4.236527 AGTTTGCCCCCACTTAGAATAG 57.763 45.455 0.00 0.00 0.00 1.73
256 257 5.398581 CCATAGTTTGCCCCCACTTAGAATA 60.399 44.000 0.00 0.00 0.00 1.75
257 258 4.536765 CATAGTTTGCCCCCACTTAGAAT 58.463 43.478 0.00 0.00 0.00 2.40
258 259 3.308832 CCATAGTTTGCCCCCACTTAGAA 60.309 47.826 0.00 0.00 0.00 2.10
259 260 2.241176 CCATAGTTTGCCCCCACTTAGA 59.759 50.000 0.00 0.00 0.00 2.10
260 261 2.654863 CCATAGTTTGCCCCCACTTAG 58.345 52.381 0.00 0.00 0.00 2.18
261 262 1.286553 CCCATAGTTTGCCCCCACTTA 59.713 52.381 0.00 0.00 0.00 2.24
262 263 0.041090 CCCATAGTTTGCCCCCACTT 59.959 55.000 0.00 0.00 0.00 3.16
263 264 0.849094 TCCCATAGTTTGCCCCCACT 60.849 55.000 0.00 0.00 0.00 4.00
264 265 0.395724 CTCCCATAGTTTGCCCCCAC 60.396 60.000 0.00 0.00 0.00 4.61
265 266 0.849094 ACTCCCATAGTTTGCCCCCA 60.849 55.000 0.00 0.00 33.35 4.96
266 267 0.395724 CACTCCCATAGTTTGCCCCC 60.396 60.000 0.00 0.00 35.76 5.40
267 268 0.395724 CCACTCCCATAGTTTGCCCC 60.396 60.000 0.00 0.00 35.76 5.80
268 269 0.395724 CCCACTCCCATAGTTTGCCC 60.396 60.000 0.00 0.00 35.76 5.36
269 270 0.395724 CCCCACTCCCATAGTTTGCC 60.396 60.000 0.00 0.00 35.76 4.52
270 271 0.395724 CCCCCACTCCCATAGTTTGC 60.396 60.000 0.00 0.00 35.76 3.68
271 272 0.395724 GCCCCCACTCCCATAGTTTG 60.396 60.000 0.00 0.00 35.76 2.93
272 273 0.849094 TGCCCCCACTCCCATAGTTT 60.849 55.000 0.00 0.00 35.76 2.66
273 274 0.627469 ATGCCCCCACTCCCATAGTT 60.627 55.000 0.00 0.00 35.76 2.24
274 275 0.270699 TATGCCCCCACTCCCATAGT 59.729 55.000 0.00 0.00 39.81 2.12
275 276 0.693049 GTATGCCCCCACTCCCATAG 59.307 60.000 0.00 0.00 0.00 2.23
276 277 0.270699 AGTATGCCCCCACTCCCATA 59.729 55.000 0.00 0.00 0.00 2.74
277 278 0.627469 AAGTATGCCCCCACTCCCAT 60.627 55.000 0.00 0.00 0.00 4.00
278 279 0.849094 AAAGTATGCCCCCACTCCCA 60.849 55.000 0.00 0.00 0.00 4.37
279 280 0.395724 CAAAGTATGCCCCCACTCCC 60.396 60.000 0.00 0.00 0.00 4.30
280 281 0.331616 ACAAAGTATGCCCCCACTCC 59.668 55.000 0.00 0.00 0.00 3.85
281 282 2.026636 TGTACAAAGTATGCCCCCACTC 60.027 50.000 0.00 0.00 0.00 3.51
282 283 1.989586 TGTACAAAGTATGCCCCCACT 59.010 47.619 0.00 0.00 0.00 4.00
283 284 2.500392 TGTACAAAGTATGCCCCCAC 57.500 50.000 0.00 0.00 0.00 4.61
284 285 3.527507 TTTGTACAAAGTATGCCCCCA 57.472 42.857 17.01 0.00 0.00 4.96
285 286 4.464597 TGAATTTGTACAAAGTATGCCCCC 59.535 41.667 24.22 10.07 33.32 5.40
286 287 5.047660 TGTGAATTTGTACAAAGTATGCCCC 60.048 40.000 24.22 10.70 33.32 5.80
287 288 6.019779 TGTGAATTTGTACAAAGTATGCCC 57.980 37.500 24.22 11.34 33.32 5.36
288 289 8.458843 ACTATGTGAATTTGTACAAAGTATGCC 58.541 33.333 24.22 11.67 33.32 4.40
289 290 9.840427 AACTATGTGAATTTGTACAAAGTATGC 57.160 29.630 24.22 15.46 33.32 3.14
293 294 9.528018 CCAAAACTATGTGAATTTGTACAAAGT 57.472 29.630 24.22 22.36 33.32 2.66
294 295 8.487176 GCCAAAACTATGTGAATTTGTACAAAG 58.513 33.333 24.22 11.75 33.32 2.77
295 296 7.981789 TGCCAAAACTATGTGAATTTGTACAAA 59.018 29.630 22.58 22.58 32.29 2.83
296 297 7.492524 TGCCAAAACTATGTGAATTTGTACAA 58.507 30.769 3.59 3.59 32.29 2.41
297 298 7.043961 TGCCAAAACTATGTGAATTTGTACA 57.956 32.000 0.00 0.00 32.29 2.90
298 299 7.938563 TTGCCAAAACTATGTGAATTTGTAC 57.061 32.000 0.00 0.00 32.29 2.90
299 300 8.948631 TTTTGCCAAAACTATGTGAATTTGTA 57.051 26.923 0.00 0.00 32.29 2.41
300 301 7.856145 TTTTGCCAAAACTATGTGAATTTGT 57.144 28.000 0.00 0.00 32.29 2.83
301 302 9.733219 AATTTTTGCCAAAACTATGTGAATTTG 57.267 25.926 1.25 0.00 34.63 2.32
303 304 9.949174 GAAATTTTTGCCAAAACTATGTGAATT 57.051 25.926 1.25 0.00 34.63 2.17
304 305 9.341078 AGAAATTTTTGCCAAAACTATGTGAAT 57.659 25.926 1.25 0.00 34.63 2.57
305 306 8.610896 CAGAAATTTTTGCCAAAACTATGTGAA 58.389 29.630 1.25 0.00 34.63 3.18
306 307 7.984050 TCAGAAATTTTTGCCAAAACTATGTGA 59.016 29.630 1.25 3.43 34.63 3.58
307 308 8.140677 TCAGAAATTTTTGCCAAAACTATGTG 57.859 30.769 1.25 1.21 34.63 3.21
308 309 8.729805 TTCAGAAATTTTTGCCAAAACTATGT 57.270 26.923 1.25 0.00 34.63 2.29
347 348 8.517878 CCACTCAAAATATGAAACTTCAGTGAT 58.482 33.333 0.00 0.00 41.08 3.06
348 349 7.040478 CCCACTCAAAATATGAAACTTCAGTGA 60.040 37.037 0.00 0.00 41.08 3.41
349 350 7.086376 CCCACTCAAAATATGAAACTTCAGTG 58.914 38.462 0.00 0.00 41.08 3.66
350 351 6.209391 CCCCACTCAAAATATGAAACTTCAGT 59.791 38.462 0.00 0.00 41.08 3.41
351 352 6.209391 ACCCCACTCAAAATATGAAACTTCAG 59.791 38.462 0.00 0.00 41.08 3.02
352 353 6.074648 ACCCCACTCAAAATATGAAACTTCA 58.925 36.000 0.00 0.00 42.14 3.02
353 354 6.350194 GGACCCCACTCAAAATATGAAACTTC 60.350 42.308 0.00 0.00 37.67 3.01
354 355 5.480422 GGACCCCACTCAAAATATGAAACTT 59.520 40.000 0.00 0.00 37.67 2.66
355 356 5.016831 GGACCCCACTCAAAATATGAAACT 58.983 41.667 0.00 0.00 37.67 2.66
356 357 5.016831 AGGACCCCACTCAAAATATGAAAC 58.983 41.667 0.00 0.00 37.67 2.78
357 358 5.269554 AGGACCCCACTCAAAATATGAAA 57.730 39.130 0.00 0.00 37.67 2.69
358 359 4.946160 AGGACCCCACTCAAAATATGAA 57.054 40.909 0.00 0.00 37.67 2.57
359 360 4.412199 CCTAGGACCCCACTCAAAATATGA 59.588 45.833 1.05 0.00 36.38 2.15
360 361 4.718961 CCTAGGACCCCACTCAAAATATG 58.281 47.826 1.05 0.00 0.00 1.78
361 362 3.138468 GCCTAGGACCCCACTCAAAATAT 59.862 47.826 14.75 0.00 0.00 1.28
362 363 2.508300 GCCTAGGACCCCACTCAAAATA 59.492 50.000 14.75 0.00 0.00 1.40
363 364 1.285078 GCCTAGGACCCCACTCAAAAT 59.715 52.381 14.75 0.00 0.00 1.82
364 365 0.696501 GCCTAGGACCCCACTCAAAA 59.303 55.000 14.75 0.00 0.00 2.44
365 366 1.205460 GGCCTAGGACCCCACTCAAA 61.205 60.000 14.75 0.00 0.00 2.69
366 367 1.615424 GGCCTAGGACCCCACTCAA 60.615 63.158 14.75 0.00 0.00 3.02
367 368 2.040606 GGCCTAGGACCCCACTCA 59.959 66.667 14.75 0.00 0.00 3.41
368 369 2.768769 GGGCCTAGGACCCCACTC 60.769 72.222 25.13 0.00 42.01 3.51
374 375 2.768769 GAGTGGGGGCCTAGGACC 60.769 72.222 27.59 27.59 44.33 4.46
375 376 1.957822 TAGGAGTGGGGGCCTAGGAC 61.958 65.000 14.75 10.52 35.73 3.85
376 377 1.010602 ATAGGAGTGGGGGCCTAGGA 61.011 60.000 14.75 0.00 39.93 2.94
377 378 0.838122 CATAGGAGTGGGGGCCTAGG 60.838 65.000 3.67 3.67 39.93 3.02
378 379 0.191064 TCATAGGAGTGGGGGCCTAG 59.809 60.000 0.84 0.00 39.93 3.02
379 380 0.645496 TTCATAGGAGTGGGGGCCTA 59.355 55.000 0.84 0.00 40.78 3.93
380 381 0.988678 GTTCATAGGAGTGGGGGCCT 60.989 60.000 0.84 0.00 38.31 5.19
381 382 1.532238 GTTCATAGGAGTGGGGGCC 59.468 63.158 0.00 0.00 0.00 5.80
382 383 1.146263 CGTTCATAGGAGTGGGGGC 59.854 63.158 0.00 0.00 0.00 5.80
383 384 0.178068 CACGTTCATAGGAGTGGGGG 59.822 60.000 0.00 0.00 0.00 5.40
384 385 3.760693 CACGTTCATAGGAGTGGGG 57.239 57.895 0.00 0.00 0.00 4.96
387 388 1.134788 GGACCCACGTTCATAGGAGTG 60.135 57.143 0.00 0.00 0.00 3.51
388 389 1.192428 GGACCCACGTTCATAGGAGT 58.808 55.000 0.00 0.00 0.00 3.85
389 390 0.102481 CGGACCCACGTTCATAGGAG 59.898 60.000 0.00 0.00 0.00 3.69
390 391 1.952102 GCGGACCCACGTTCATAGGA 61.952 60.000 0.00 0.00 35.98 2.94
391 392 1.520787 GCGGACCCACGTTCATAGG 60.521 63.158 0.00 0.00 35.98 2.57
392 393 1.520787 GGCGGACCCACGTTCATAG 60.521 63.158 0.00 0.00 35.98 2.23
393 394 2.580276 GGCGGACCCACGTTCATA 59.420 61.111 0.00 0.00 35.98 2.15
408 409 0.106719 TATTGGTTGCTAGCAGGGGC 60.107 55.000 18.45 9.49 41.61 5.80
409 410 1.972872 CTATTGGTTGCTAGCAGGGG 58.027 55.000 18.45 1.96 32.55 4.79
410 411 1.133976 AGCTATTGGTTGCTAGCAGGG 60.134 52.381 18.45 5.55 42.25 4.45
411 412 2.338577 AGCTATTGGTTGCTAGCAGG 57.661 50.000 18.45 4.89 42.25 4.85
412 413 3.561725 GGTAAGCTATTGGTTGCTAGCAG 59.438 47.826 18.45 5.49 42.25 4.24
413 414 3.541632 GGTAAGCTATTGGTTGCTAGCA 58.458 45.455 14.93 14.93 42.25 3.49
414 415 2.544267 CGGTAAGCTATTGGTTGCTAGC 59.456 50.000 8.10 8.10 38.75 3.42
417 418 2.747446 CAACGGTAAGCTATTGGTTGCT 59.253 45.455 7.06 0.00 41.82 3.91
420 421 1.735571 CGCAACGGTAAGCTATTGGTT 59.264 47.619 0.00 0.00 37.65 3.67
423 424 2.413796 TGTTCGCAACGGTAAGCTATTG 59.586 45.455 0.00 0.00 0.00 1.90
465 466 1.404035 GGGCAACGAGTGTCAACTTTT 59.596 47.619 0.00 0.00 36.52 2.27
1214 1217 2.034879 GCTCCAAACGCTGCTAGCA 61.035 57.895 18.22 18.22 42.58 3.49
1366 1369 1.429148 CTTGCGGGCAGTACGATTCC 61.429 60.000 0.00 0.00 0.00 3.01
1367 1370 2.006772 CTTGCGGGCAGTACGATTC 58.993 57.895 0.00 0.00 0.00 2.52
1368 1371 2.106683 GCTTGCGGGCAGTACGATT 61.107 57.895 0.00 0.00 0.00 3.34
1369 1372 2.511600 GCTTGCGGGCAGTACGAT 60.512 61.111 0.00 0.00 0.00 3.73
1370 1373 3.234630 AAGCTTGCGGGCAGTACGA 62.235 57.895 0.00 0.00 34.17 3.43
1371 1374 2.740714 GAAGCTTGCGGGCAGTACG 61.741 63.158 2.10 0.00 34.17 3.67
1372 1375 2.399356 GGAAGCTTGCGGGCAGTAC 61.399 63.158 2.10 0.00 34.17 2.73
1373 1376 2.046314 GGAAGCTTGCGGGCAGTA 60.046 61.111 2.10 0.00 34.17 2.74
1374 1377 4.269523 TGGAAGCTTGCGGGCAGT 62.270 61.111 13.65 0.00 34.17 4.40
1375 1378 3.437795 CTGGAAGCTTGCGGGCAG 61.438 66.667 18.45 3.80 34.17 4.85
1376 1379 4.269523 ACTGGAAGCTTGCGGGCA 62.270 61.111 27.87 3.70 37.60 5.36
1377 1380 3.741476 CACTGGAAGCTTGCGGGC 61.741 66.667 27.87 2.59 37.60 6.13
1378 1381 2.032528 TCACTGGAAGCTTGCGGG 59.967 61.111 27.87 18.01 37.60 6.13
1379 1382 0.886490 AACTCACTGGAAGCTTGCGG 60.886 55.000 23.75 23.75 37.60 5.69
1380 1383 0.236711 CAACTCACTGGAAGCTTGCG 59.763 55.000 13.65 10.42 37.60 4.85
1381 1384 0.039708 GCAACTCACTGGAAGCTTGC 60.040 55.000 11.58 11.58 37.60 4.01
1382 1385 0.595095 GGCAACTCACTGGAAGCTTG 59.405 55.000 2.10 0.00 37.60 4.01
1383 1386 3.027419 GGCAACTCACTGGAAGCTT 57.973 52.632 0.00 0.00 37.60 3.74
1384 1387 4.809070 GGCAACTCACTGGAAGCT 57.191 55.556 0.00 0.00 37.60 3.74
1396 1399 0.461961 AGGCTACGAGATGAGGCAAC 59.538 55.000 0.00 0.00 40.58 4.17
1397 1400 1.957177 CTAGGCTACGAGATGAGGCAA 59.043 52.381 0.00 0.00 40.58 4.52
1398 1401 1.610363 CTAGGCTACGAGATGAGGCA 58.390 55.000 0.00 0.00 40.58 4.75
1399 1402 0.242555 GCTAGGCTACGAGATGAGGC 59.757 60.000 0.00 0.00 38.49 4.70
1400 1403 0.519519 CGCTAGGCTACGAGATGAGG 59.480 60.000 9.84 0.00 0.00 3.86
1401 1404 1.514003 TCGCTAGGCTACGAGATGAG 58.486 55.000 12.86 0.00 33.69 2.90
1402 1405 1.807142 CATCGCTAGGCTACGAGATGA 59.193 52.381 21.42 6.35 42.31 2.92
1403 1406 1.807142 TCATCGCTAGGCTACGAGATG 59.193 52.381 20.64 20.64 42.31 2.90
1404 1407 2.186532 TCATCGCTAGGCTACGAGAT 57.813 50.000 18.82 12.21 42.31 2.75
1405 1408 1.602851 GTTCATCGCTAGGCTACGAGA 59.397 52.381 18.82 14.51 42.31 4.04
1406 1409 1.335142 GGTTCATCGCTAGGCTACGAG 60.335 57.143 18.82 13.13 42.31 4.18
1407 1410 0.666913 GGTTCATCGCTAGGCTACGA 59.333 55.000 17.18 17.18 43.33 3.43
1408 1411 0.318784 GGGTTCATCGCTAGGCTACG 60.319 60.000 9.32 9.32 0.00 3.51
1409 1412 0.750850 TGGGTTCATCGCTAGGCTAC 59.249 55.000 0.00 0.00 0.00 3.58
1410 1413 1.717032 ATGGGTTCATCGCTAGGCTA 58.283 50.000 0.00 0.00 0.00 3.93
1411 1414 0.839946 AATGGGTTCATCGCTAGGCT 59.160 50.000 0.00 0.00 32.24 4.58
1412 1415 2.543777 TAATGGGTTCATCGCTAGGC 57.456 50.000 0.00 0.00 32.24 3.93
1413 1416 2.800544 CGTTAATGGGTTCATCGCTAGG 59.199 50.000 0.00 0.00 32.24 3.02
1414 1417 2.800544 CCGTTAATGGGTTCATCGCTAG 59.199 50.000 5.74 0.00 32.24 3.42
1415 1418 2.168936 ACCGTTAATGGGTTCATCGCTA 59.831 45.455 18.06 0.00 32.70 4.26
1416 1419 1.065709 ACCGTTAATGGGTTCATCGCT 60.066 47.619 18.06 0.00 32.70 4.93
1417 1420 1.375551 ACCGTTAATGGGTTCATCGC 58.624 50.000 18.06 0.00 32.70 4.58
1418 1421 4.428615 AAAACCGTTAATGGGTTCATCG 57.571 40.909 17.40 0.00 46.75 3.84
1419 1422 4.926832 CCAAAAACCGTTAATGGGTTCATC 59.073 41.667 17.40 0.00 46.75 2.92
1420 1423 4.345547 ACCAAAAACCGTTAATGGGTTCAT 59.654 37.500 17.40 7.15 46.75 2.57
1421 1424 3.705072 ACCAAAAACCGTTAATGGGTTCA 59.295 39.130 17.40 0.00 46.75 3.18
1422 1425 4.325028 ACCAAAAACCGTTAATGGGTTC 57.675 40.909 17.40 0.00 46.75 3.62
1424 1427 4.156373 CGATACCAAAAACCGTTAATGGGT 59.844 41.667 18.06 8.76 40.20 4.51
1425 1428 4.395542 TCGATACCAAAAACCGTTAATGGG 59.604 41.667 18.06 6.33 35.44 4.00
1426 1429 5.548706 TCGATACCAAAAACCGTTAATGG 57.451 39.130 12.41 12.41 37.19 3.16
1427 1430 6.833839 TCTTCGATACCAAAAACCGTTAATG 58.166 36.000 0.00 0.00 0.00 1.90
1428 1431 7.201670 GGATCTTCGATACCAAAAACCGTTAAT 60.202 37.037 0.00 0.00 0.00 1.40
1429 1432 6.092533 GGATCTTCGATACCAAAAACCGTTAA 59.907 38.462 0.00 0.00 0.00 2.01
1430 1433 5.581874 GGATCTTCGATACCAAAAACCGTTA 59.418 40.000 0.00 0.00 0.00 3.18
1431 1434 4.393990 GGATCTTCGATACCAAAAACCGTT 59.606 41.667 0.00 0.00 0.00 4.44
1432 1435 3.937079 GGATCTTCGATACCAAAAACCGT 59.063 43.478 0.00 0.00 0.00 4.83
1433 1436 3.311596 GGGATCTTCGATACCAAAAACCG 59.688 47.826 0.16 0.00 0.00 4.44
1434 1437 3.630769 GGGGATCTTCGATACCAAAAACC 59.369 47.826 7.38 0.00 0.00 3.27
1435 1438 3.311596 CGGGGATCTTCGATACCAAAAAC 59.688 47.826 7.38 0.00 0.00 2.43
1436 1439 3.537580 CGGGGATCTTCGATACCAAAAA 58.462 45.455 7.38 0.00 0.00 1.94
1437 1440 2.158871 CCGGGGATCTTCGATACCAAAA 60.159 50.000 7.38 0.00 0.00 2.44
1438 1441 1.414919 CCGGGGATCTTCGATACCAAA 59.585 52.381 7.38 0.00 0.00 3.28
1439 1442 1.045407 CCGGGGATCTTCGATACCAA 58.955 55.000 7.38 0.00 0.00 3.67
1440 1443 0.105862 ACCGGGGATCTTCGATACCA 60.106 55.000 6.32 0.00 0.00 3.25
1441 1444 1.046204 AACCGGGGATCTTCGATACC 58.954 55.000 6.32 0.00 0.00 2.73
1442 1445 2.904697 AAACCGGGGATCTTCGATAC 57.095 50.000 6.32 0.00 0.00 2.24
1443 1446 4.413760 AGATAAACCGGGGATCTTCGATA 58.586 43.478 6.32 2.15 0.00 2.92
1444 1447 3.240302 AGATAAACCGGGGATCTTCGAT 58.760 45.455 6.32 0.00 0.00 3.59
1445 1448 2.626743 GAGATAAACCGGGGATCTTCGA 59.373 50.000 6.32 0.00 30.01 3.71
1446 1449 2.364324 TGAGATAAACCGGGGATCTTCG 59.636 50.000 6.32 0.00 30.01 3.79
1447 1450 3.729966 GTGAGATAAACCGGGGATCTTC 58.270 50.000 6.32 5.86 30.01 2.87
1448 1451 2.102588 CGTGAGATAAACCGGGGATCTT 59.897 50.000 6.32 0.00 30.01 2.40
1449 1452 1.687123 CGTGAGATAAACCGGGGATCT 59.313 52.381 6.32 10.67 32.57 2.75
1450 1453 1.872653 GCGTGAGATAAACCGGGGATC 60.873 57.143 6.32 5.33 0.00 3.36
1451 1454 0.106149 GCGTGAGATAAACCGGGGAT 59.894 55.000 6.32 0.00 0.00 3.85
1452 1455 1.518774 GCGTGAGATAAACCGGGGA 59.481 57.895 6.32 0.00 0.00 4.81
1453 1456 1.523032 GGCGTGAGATAAACCGGGG 60.523 63.158 6.32 0.00 0.00 5.73
1454 1457 0.810031 CTGGCGTGAGATAAACCGGG 60.810 60.000 6.32 0.00 0.00 5.73
1455 1458 0.174845 TCTGGCGTGAGATAAACCGG 59.825 55.000 0.00 0.00 0.00 5.28
1456 1459 2.128035 GATCTGGCGTGAGATAAACCG 58.872 52.381 0.00 0.00 32.57 4.44
1457 1460 3.068873 AGAGATCTGGCGTGAGATAAACC 59.931 47.826 0.00 0.00 32.57 3.27
1458 1461 4.202060 TGAGAGATCTGGCGTGAGATAAAC 60.202 45.833 0.00 0.00 32.57 2.01
1459 1462 3.954258 TGAGAGATCTGGCGTGAGATAAA 59.046 43.478 0.00 0.00 32.57 1.40
1460 1463 3.555966 TGAGAGATCTGGCGTGAGATAA 58.444 45.455 0.00 0.00 32.57 1.75
1461 1464 3.214696 TGAGAGATCTGGCGTGAGATA 57.785 47.619 0.00 0.00 32.57 1.98
1462 1465 2.064434 TGAGAGATCTGGCGTGAGAT 57.936 50.000 0.00 0.00 35.27 2.75
1463 1466 1.952990 GATGAGAGATCTGGCGTGAGA 59.047 52.381 0.00 0.00 0.00 3.27
1464 1467 1.680207 TGATGAGAGATCTGGCGTGAG 59.320 52.381 0.00 0.00 0.00 3.51
1465 1468 1.406898 GTGATGAGAGATCTGGCGTGA 59.593 52.381 0.00 0.00 0.00 4.35
1466 1469 1.135721 TGTGATGAGAGATCTGGCGTG 59.864 52.381 0.00 0.00 0.00 5.34
1467 1470 1.135915 GTGTGATGAGAGATCTGGCGT 59.864 52.381 0.00 0.00 0.00 5.68
1468 1471 1.135721 TGTGTGATGAGAGATCTGGCG 59.864 52.381 0.00 0.00 0.00 5.69
1469 1472 2.975732 TGTGTGATGAGAGATCTGGC 57.024 50.000 0.00 0.00 0.00 4.85
1470 1473 3.196463 GCTTGTGTGATGAGAGATCTGG 58.804 50.000 0.00 0.00 0.00 3.86
1471 1474 2.858941 CGCTTGTGTGATGAGAGATCTG 59.141 50.000 0.00 0.00 0.00 2.90
1472 1475 2.738000 GCGCTTGTGTGATGAGAGATCT 60.738 50.000 0.00 0.00 0.00 2.75
1473 1476 1.592081 GCGCTTGTGTGATGAGAGATC 59.408 52.381 0.00 0.00 0.00 2.75
1474 1477 1.649664 GCGCTTGTGTGATGAGAGAT 58.350 50.000 0.00 0.00 0.00 2.75
1475 1478 0.733909 CGCGCTTGTGTGATGAGAGA 60.734 55.000 5.56 0.00 0.00 3.10
1476 1479 0.733909 TCGCGCTTGTGTGATGAGAG 60.734 55.000 5.56 0.00 0.00 3.20
1477 1480 0.733909 CTCGCGCTTGTGTGATGAGA 60.734 55.000 5.56 0.00 32.88 3.27
1478 1481 0.733909 TCTCGCGCTTGTGTGATGAG 60.734 55.000 5.56 0.84 32.61 2.90
1479 1482 0.319469 TTCTCGCGCTTGTGTGATGA 60.319 50.000 5.56 0.00 0.00 2.92
1480 1483 0.094216 CTTCTCGCGCTTGTGTGATG 59.906 55.000 5.56 0.00 0.00 3.07
1481 1484 1.630244 GCTTCTCGCGCTTGTGTGAT 61.630 55.000 5.56 0.00 0.00 3.06
1482 1485 2.310233 GCTTCTCGCGCTTGTGTGA 61.310 57.895 5.56 0.00 0.00 3.58
1483 1486 2.171940 GCTTCTCGCGCTTGTGTG 59.828 61.111 5.56 0.00 0.00 3.82
1492 1495 1.148759 GGGATCAAGTCGCTTCTCGC 61.149 60.000 0.00 0.00 36.87 5.03
1493 1496 0.457851 AGGGATCAAGTCGCTTCTCG 59.542 55.000 0.00 0.00 46.95 4.04
1499 1502 1.045911 AGGGAGAGGGATCAAGTCGC 61.046 60.000 0.00 0.00 39.92 5.19
1500 1503 0.749649 CAGGGAGAGGGATCAAGTCG 59.250 60.000 0.00 0.00 0.00 4.18
1501 1504 1.872773 ACAGGGAGAGGGATCAAGTC 58.127 55.000 0.00 0.00 0.00 3.01
1502 1505 1.912043 CAACAGGGAGAGGGATCAAGT 59.088 52.381 0.00 0.00 0.00 3.16
1503 1506 2.191400 TCAACAGGGAGAGGGATCAAG 58.809 52.381 0.00 0.00 0.00 3.02
1504 1507 2.342406 TCAACAGGGAGAGGGATCAA 57.658 50.000 0.00 0.00 0.00 2.57
1505 1508 2.121948 CATCAACAGGGAGAGGGATCA 58.878 52.381 0.00 0.00 0.00 2.92
1506 1509 2.122768 ACATCAACAGGGAGAGGGATC 58.877 52.381 0.00 0.00 0.00 3.36
1507 1510 2.240667 CAACATCAACAGGGAGAGGGAT 59.759 50.000 0.00 0.00 0.00 3.85
1508 1511 1.630369 CAACATCAACAGGGAGAGGGA 59.370 52.381 0.00 0.00 0.00 4.20
1509 1512 1.630369 TCAACATCAACAGGGAGAGGG 59.370 52.381 0.00 0.00 0.00 4.30
1510 1513 3.054875 TCATCAACATCAACAGGGAGAGG 60.055 47.826 0.00 0.00 0.00 3.69
1511 1514 4.212143 TCATCAACATCAACAGGGAGAG 57.788 45.455 0.00 0.00 0.00 3.20
1512 1515 4.566278 CCTTCATCAACATCAACAGGGAGA 60.566 45.833 0.00 0.00 0.00 3.71
1513 1516 3.693085 CCTTCATCAACATCAACAGGGAG 59.307 47.826 0.00 0.00 0.00 4.30
1514 1517 3.561960 CCCTTCATCAACATCAACAGGGA 60.562 47.826 0.00 0.00 42.25 4.20
1515 1518 2.756760 CCCTTCATCAACATCAACAGGG 59.243 50.000 0.00 0.00 33.98 4.45
1516 1519 2.756760 CCCCTTCATCAACATCAACAGG 59.243 50.000 0.00 0.00 0.00 4.00
1517 1520 2.165030 GCCCCTTCATCAACATCAACAG 59.835 50.000 0.00 0.00 0.00 3.16
1518 1521 2.170166 GCCCCTTCATCAACATCAACA 58.830 47.619 0.00 0.00 0.00 3.33
1519 1522 2.424956 GAGCCCCTTCATCAACATCAAC 59.575 50.000 0.00 0.00 0.00 3.18
1520 1523 2.309755 AGAGCCCCTTCATCAACATCAA 59.690 45.455 0.00 0.00 0.00 2.57
1521 1524 1.918262 AGAGCCCCTTCATCAACATCA 59.082 47.619 0.00 0.00 0.00 3.07
1522 1525 2.172293 AGAGAGCCCCTTCATCAACATC 59.828 50.000 0.00 0.00 0.00 3.06
1523 1526 2.172293 GAGAGAGCCCCTTCATCAACAT 59.828 50.000 0.00 0.00 0.00 2.71
1557 1560 1.679680 CTTGTATCCCCTGCAATGCTG 59.320 52.381 6.82 5.88 0.00 4.41
1559 1562 1.767759 ACTTGTATCCCCTGCAATGC 58.232 50.000 0.00 0.00 0.00 3.56
1573 1576 2.085343 ATCCTGGCTGGCCAACTTGT 62.085 55.000 15.47 0.00 46.63 3.16
1609 1612 4.201792 CCATCGCTGATATTAGCAAGATGC 60.202 45.833 21.70 0.00 43.87 3.91
1641 1644 4.248842 TGCACGTGGACCCACAGG 62.249 66.667 18.88 10.53 46.47 4.00
1674 1679 1.493950 GCAACCTCGAGATGGCATCG 61.494 60.000 21.01 12.81 41.50 3.84
1679 1684 2.892425 GGCGCAACCTCGAGATGG 60.892 66.667 15.71 0.00 34.51 3.51
1718 1723 2.287584 TGAACTGGGGATGGGAGAATT 58.712 47.619 0.00 0.00 0.00 2.17
1719 1724 1.985622 TGAACTGGGGATGGGAGAAT 58.014 50.000 0.00 0.00 0.00 2.40
1753 1758 5.106197 TGACAGCTCAACGCAATATTTTGAT 60.106 36.000 0.00 0.00 42.61 2.57
1761 1766 1.089920 GGATGACAGCTCAACGCAAT 58.910 50.000 0.00 0.00 42.61 3.56
1771 1776 6.722689 AACTTTTGTTCCTCTGGATGACAGC 61.723 44.000 0.00 0.00 42.09 4.40
1773 1778 4.437682 ACTTTTGTTCCTCTGGATGACA 57.562 40.909 0.00 0.00 0.00 3.58
1816 1821 3.418047 TCCTCAACTCAGTGTCGATGTA 58.582 45.455 0.00 0.00 0.00 2.29
1826 1831 1.085091 GTGCATGCTCCTCAACTCAG 58.915 55.000 20.33 0.00 0.00 3.35
1837 1842 4.019950 TGTCCTGCTATATATGTGCATGCT 60.020 41.667 20.33 0.40 36.07 3.79
1859 1864 5.957842 TGCTAATGGTGTTACCTCTTTTG 57.042 39.130 0.00 0.00 39.58 2.44
1873 1879 5.558818 AGCTCTTCTCCAATATGCTAATGG 58.441 41.667 0.00 0.00 35.49 3.16
1963 1973 0.319083 ATGCCAACTTGCACCATGTG 59.681 50.000 0.00 0.00 45.48 3.21
1984 1994 3.486383 TGCAGTTCTTTGGGAGGTTAAG 58.514 45.455 0.00 0.00 0.00 1.85
1993 2003 2.322161 CGCTCAAATGCAGTTCTTTGG 58.678 47.619 9.90 3.64 34.01 3.28
2030 2040 8.674607 ACGAAATGTTCCAGAATTATTTACTCC 58.325 33.333 0.00 0.00 0.00 3.85
2084 2094 1.695813 CGCTGCAGATCTTATCTCCG 58.304 55.000 20.43 2.99 37.58 4.63
2090 2100 0.179100 GAGGTGCGCTGCAGATCTTA 60.179 55.000 20.43 0.00 40.08 2.10
2103 2113 5.376854 ACAAACAACAGATATTGAGGTGC 57.623 39.130 0.00 0.00 33.57 5.01
2108 2118 7.719193 TCTCAAAGGACAAACAACAGATATTGA 59.281 33.333 0.00 0.00 33.57 2.57
2117 2127 5.650543 ACACATTCTCAAAGGACAAACAAC 58.349 37.500 0.00 0.00 0.00 3.32
2131 2141 2.159184 TGAGATGAGCGGACACATTCTC 60.159 50.000 0.00 0.00 0.00 2.87
2138 2148 1.065926 AGCATTTGAGATGAGCGGACA 60.066 47.619 0.00 0.00 0.00 4.02
2143 2153 4.034858 TGATTTCGAGCATTTGAGATGAGC 59.965 41.667 0.00 0.00 0.00 4.26
2149 2159 4.869297 AGACTCTGATTTCGAGCATTTGAG 59.131 41.667 0.00 0.00 31.71 3.02
2152 2162 4.825422 TCAGACTCTGATTTCGAGCATTT 58.175 39.130 4.50 0.00 35.39 2.32
2281 2296 0.741915 CGGAGCTACCCAGTCTTCTC 59.258 60.000 0.00 0.00 34.64 2.87
2282 2297 0.331954 TCGGAGCTACCCAGTCTTCT 59.668 55.000 0.00 0.00 34.64 2.85
2299 2316 1.318576 AAAAGGCAGGGTCTGTTTCG 58.681 50.000 0.00 0.00 33.43 3.46
2306 2323 1.367471 GGTGCAAAAAGGCAGGGTC 59.633 57.895 0.00 0.00 45.96 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.