Multiple sequence alignment - TraesCS2D01G149400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G149400 chr2D 100.000 4193 0 0 1 4193 90819737 90815545 0.000000e+00 7744.0
1 TraesCS2D01G149400 chr2B 97.875 2588 45 3 887 3466 143824886 143822301 0.000000e+00 4466.0
2 TraesCS2D01G149400 chr2B 88.066 662 49 9 3470 4130 143807364 143806732 0.000000e+00 758.0
3 TraesCS2D01G149400 chr2B 77.285 361 57 12 40 394 52145084 52145425 5.530000e-44 189.0
4 TraesCS2D01G149400 chr2B 92.308 65 5 0 4129 4193 143779783 143779719 4.460000e-15 93.5
5 TraesCS2D01G149400 chr2B 100.000 35 0 0 3262 3296 254031304 254031270 9.730000e-07 65.8
6 TraesCS2D01G149400 chr2B 91.304 46 2 1 3251 3294 587640150 587640105 1.260000e-05 62.1
7 TraesCS2D01G149400 chr2A 97.899 2189 43 2 1281 3469 90578064 90575879 0.000000e+00 3784.0
8 TraesCS2D01G149400 chr2A 90.797 728 50 6 3467 4193 90560197 90559486 0.000000e+00 957.0
9 TraesCS2D01G149400 chr5D 96.435 2272 72 2 934 3199 370453003 370450735 0.000000e+00 3738.0
10 TraesCS2D01G149400 chr5D 85.510 559 59 7 398 934 510505563 510506121 7.870000e-157 564.0
11 TraesCS2D01G149400 chr5D 83.601 561 67 13 398 935 215917174 215917732 1.740000e-138 503.0
12 TraesCS2D01G149400 chr5A 95.908 2273 76 7 934 3199 472920848 472918586 0.000000e+00 3666.0
13 TraesCS2D01G149400 chr5A 80.927 561 84 14 400 938 138762956 138762397 5.010000e-114 422.0
14 TraesCS2D01G149400 chr5A 92.857 42 1 1 3255 3294 227169302 227169261 4.530000e-05 60.2
15 TraesCS2D01G149400 chr4A 85.310 565 59 12 398 938 695924315 695923751 2.830000e-156 562.0
16 TraesCS2D01G149400 chr4A 81.044 364 65 4 40 400 358858475 358858113 1.910000e-73 287.0
17 TraesCS2D01G149400 chr4A 94.872 39 0 1 3255 3291 475016212 475016250 4.530000e-05 60.2
18 TraesCS2D01G149400 chr4B 84.740 557 61 11 404 938 2225395 2224841 1.720000e-148 536.0
19 TraesCS2D01G149400 chr4B 95.000 40 0 1 3257 3294 634175414 634175453 1.260000e-05 62.1
20 TraesCS2D01G149400 chr6A 82.709 561 70 17 399 935 133791860 133791303 1.360000e-129 473.0
21 TraesCS2D01G149400 chr7A 81.996 561 75 15 399 935 617110153 617109595 1.780000e-123 453.0
22 TraesCS2D01G149400 chr3B 80.969 557 80 11 398 930 748424287 748424841 6.480000e-113 418.0
23 TraesCS2D01G149400 chr3B 80.332 361 61 7 40 394 682903666 682904022 8.940000e-67 265.0
24 TraesCS2D01G149400 chr7B 81.892 370 64 3 30 397 271191829 271192197 4.070000e-80 309.0
25 TraesCS2D01G149400 chr6B 80.109 367 63 8 40 400 537312140 537311778 8.940000e-67 265.0
26 TraesCS2D01G149400 chr6B 79.726 365 62 10 40 397 453272951 453272592 1.930000e-63 254.0
27 TraesCS2D01G149400 chr6B 77.231 325 64 10 399 718 84865786 84866105 9.260000e-42 182.0
28 TraesCS2D01G149400 chr6B 94.872 39 0 1 3255 3291 657480753 657480791 4.530000e-05 60.2
29 TraesCS2D01G149400 chr3D 90.217 184 16 1 219 400 22040326 22040143 5.420000e-59 239.0
30 TraesCS2D01G149400 chr6D 76.945 347 69 11 464 805 36596094 36596434 1.990000e-43 187.0
31 TraesCS2D01G149400 chr1B 92.857 42 2 1 3262 3303 409382663 409382703 4.530000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G149400 chr2D 90815545 90819737 4192 True 7744 7744 100.000 1 4193 1 chr2D.!!$R1 4192
1 TraesCS2D01G149400 chr2B 143822301 143824886 2585 True 4466 4466 97.875 887 3466 1 chr2B.!!$R3 2579
2 TraesCS2D01G149400 chr2B 143806732 143807364 632 True 758 758 88.066 3470 4130 1 chr2B.!!$R2 660
3 TraesCS2D01G149400 chr2A 90575879 90578064 2185 True 3784 3784 97.899 1281 3469 1 chr2A.!!$R2 2188
4 TraesCS2D01G149400 chr2A 90559486 90560197 711 True 957 957 90.797 3467 4193 1 chr2A.!!$R1 726
5 TraesCS2D01G149400 chr5D 370450735 370453003 2268 True 3738 3738 96.435 934 3199 1 chr5D.!!$R1 2265
6 TraesCS2D01G149400 chr5D 510505563 510506121 558 False 564 564 85.510 398 934 1 chr5D.!!$F2 536
7 TraesCS2D01G149400 chr5D 215917174 215917732 558 False 503 503 83.601 398 935 1 chr5D.!!$F1 537
8 TraesCS2D01G149400 chr5A 472918586 472920848 2262 True 3666 3666 95.908 934 3199 1 chr5A.!!$R3 2265
9 TraesCS2D01G149400 chr5A 138762397 138762956 559 True 422 422 80.927 400 938 1 chr5A.!!$R1 538
10 TraesCS2D01G149400 chr4A 695923751 695924315 564 True 562 562 85.310 398 938 1 chr4A.!!$R2 540
11 TraesCS2D01G149400 chr4B 2224841 2225395 554 True 536 536 84.740 404 938 1 chr4B.!!$R1 534
12 TraesCS2D01G149400 chr6A 133791303 133791860 557 True 473 473 82.709 399 935 1 chr6A.!!$R1 536
13 TraesCS2D01G149400 chr7A 617109595 617110153 558 True 453 453 81.996 399 935 1 chr7A.!!$R1 536
14 TraesCS2D01G149400 chr3B 748424287 748424841 554 False 418 418 80.969 398 930 1 chr3B.!!$F2 532

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
31 32 0.032403 TAGTGTGGAACGTTCGTGGG 59.968 55.000 21.34 0.0 42.39 4.61 F
141 142 0.034756 TGGTGACAGTGTCCAATCCG 59.965 55.000 20.43 0.0 35.01 4.18 F
282 283 0.038166 TTGGTGGCTTGGGATGACTC 59.962 55.000 0.00 0.0 0.00 3.36 F
379 380 0.238289 CGTGGTGGCTTTCATGTGTC 59.762 55.000 0.00 0.0 0.00 3.67 F
764 767 0.608856 TGCCGTCCTTGCATGAATGT 60.609 50.000 0.00 0.0 32.85 2.71 F
885 910 2.167662 CTTGCGGGGTTTCCATTAAGT 58.832 47.619 0.00 0.0 34.36 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1429 1471 2.298661 GGAAGAAGGGGAGGGCGAA 61.299 63.158 0.00 0.0 0.00 4.70 R
1826 1868 4.809496 CTTCCTGGCCCAGCGCAT 62.809 66.667 11.47 0.0 40.31 4.73 R
2317 2359 0.982704 ACAGTCTCAGAGCTTGGCAT 59.017 50.000 0.00 0.0 0.00 4.40 R
2427 2469 7.001674 TCAAGAAGTGCCCTAAAAATTCTACA 58.998 34.615 0.00 0.0 0.00 2.74 R
2763 2805 0.107703 TGCATAGCCCTTTCACGAGG 60.108 55.000 0.00 0.0 36.52 4.63 R
3299 3341 5.924475 AAATGCGTCCTATATCTTTTCCG 57.076 39.130 0.00 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.790336 CTTTGAAAGTTTTAGTGTGGAACG 57.210 37.500 0.00 0.00 42.39 3.95
24 25 5.883503 TTGAAAGTTTTAGTGTGGAACGT 57.116 34.783 0.00 0.00 42.39 3.99
25 26 5.883503 TGAAAGTTTTAGTGTGGAACGTT 57.116 34.783 0.00 0.00 42.39 3.99
26 27 5.871539 TGAAAGTTTTAGTGTGGAACGTTC 58.128 37.500 20.14 20.14 42.39 3.95
27 28 4.525411 AAGTTTTAGTGTGGAACGTTCG 57.475 40.909 21.34 0.00 42.39 3.95
28 29 3.524541 AGTTTTAGTGTGGAACGTTCGT 58.475 40.909 21.34 6.59 42.39 3.85
29 30 3.307782 AGTTTTAGTGTGGAACGTTCGTG 59.692 43.478 21.34 0.00 42.39 4.35
30 31 1.855513 TTAGTGTGGAACGTTCGTGG 58.144 50.000 21.34 0.00 42.39 4.94
31 32 0.032403 TAGTGTGGAACGTTCGTGGG 59.968 55.000 21.34 0.00 42.39 4.61
32 33 2.589442 TGTGGAACGTTCGTGGGC 60.589 61.111 21.34 8.25 42.39 5.36
33 34 2.280592 GTGGAACGTTCGTGGGCT 60.281 61.111 21.34 0.00 0.00 5.19
34 35 1.890510 GTGGAACGTTCGTGGGCTT 60.891 57.895 21.34 0.00 0.00 4.35
35 36 1.153127 TGGAACGTTCGTGGGCTTT 60.153 52.632 21.34 0.00 0.00 3.51
36 37 1.161563 TGGAACGTTCGTGGGCTTTC 61.162 55.000 21.34 5.43 0.00 2.62
37 38 1.161563 GGAACGTTCGTGGGCTTTCA 61.162 55.000 21.34 0.00 0.00 2.69
38 39 0.658897 GAACGTTCGTGGGCTTTCAA 59.341 50.000 13.36 0.00 0.00 2.69
39 40 1.064357 GAACGTTCGTGGGCTTTCAAA 59.936 47.619 13.36 0.00 0.00 2.69
40 41 1.096416 ACGTTCGTGGGCTTTCAAAA 58.904 45.000 0.00 0.00 0.00 2.44
41 42 1.679153 ACGTTCGTGGGCTTTCAAAAT 59.321 42.857 0.00 0.00 0.00 1.82
42 43 2.050691 CGTTCGTGGGCTTTCAAAATG 58.949 47.619 0.00 0.00 0.00 2.32
43 44 2.287308 CGTTCGTGGGCTTTCAAAATGA 60.287 45.455 0.00 0.00 0.00 2.57
44 45 3.712187 GTTCGTGGGCTTTCAAAATGAA 58.288 40.909 0.00 0.00 34.03 2.57
45 46 4.306600 GTTCGTGGGCTTTCAAAATGAAT 58.693 39.130 0.00 0.00 36.11 2.57
46 47 5.465935 GTTCGTGGGCTTTCAAAATGAATA 58.534 37.500 0.00 0.00 36.11 1.75
47 48 5.913137 TCGTGGGCTTTCAAAATGAATAT 57.087 34.783 0.00 0.00 36.11 1.28
48 49 5.649557 TCGTGGGCTTTCAAAATGAATATG 58.350 37.500 0.00 0.00 36.11 1.78
49 50 4.268405 CGTGGGCTTTCAAAATGAATATGC 59.732 41.667 0.00 0.41 36.11 3.14
50 51 5.177326 GTGGGCTTTCAAAATGAATATGCA 58.823 37.500 0.00 0.00 36.11 3.96
51 52 5.642919 GTGGGCTTTCAAAATGAATATGCAA 59.357 36.000 0.00 0.00 36.11 4.08
52 53 5.642919 TGGGCTTTCAAAATGAATATGCAAC 59.357 36.000 0.00 7.35 36.11 4.17
53 54 5.065090 GGGCTTTCAAAATGAATATGCAACC 59.935 40.000 0.00 0.00 36.11 3.77
54 55 5.876460 GGCTTTCAAAATGAATATGCAACCT 59.124 36.000 0.00 0.00 36.11 3.50
55 56 6.372381 GGCTTTCAAAATGAATATGCAACCTT 59.628 34.615 0.00 0.00 36.11 3.50
56 57 7.094677 GGCTTTCAAAATGAATATGCAACCTTT 60.095 33.333 0.00 0.00 36.11 3.11
57 58 7.747357 GCTTTCAAAATGAATATGCAACCTTTG 59.253 33.333 0.00 8.83 36.11 2.77
58 59 8.899427 TTTCAAAATGAATATGCAACCTTTGA 57.101 26.923 11.98 11.98 36.11 2.69
59 60 8.899427 TTCAAAATGAATATGCAACCTTTGAA 57.101 26.923 18.73 18.73 38.51 2.69
60 61 8.899427 TCAAAATGAATATGCAACCTTTGAAA 57.101 26.923 13.00 0.00 30.78 2.69
61 62 8.991026 TCAAAATGAATATGCAACCTTTGAAAG 58.009 29.630 13.00 0.00 30.78 2.62
62 63 8.776470 CAAAATGAATATGCAACCTTTGAAAGT 58.224 29.630 4.02 0.00 0.00 2.66
63 64 8.907222 AAATGAATATGCAACCTTTGAAAGTT 57.093 26.923 4.02 0.00 0.00 2.66
64 65 8.907222 AATGAATATGCAACCTTTGAAAGTTT 57.093 26.923 4.02 0.00 0.00 2.66
65 66 8.907222 ATGAATATGCAACCTTTGAAAGTTTT 57.093 26.923 4.02 0.00 0.00 2.43
66 67 9.995003 ATGAATATGCAACCTTTGAAAGTTTTA 57.005 25.926 4.02 0.00 0.00 1.52
67 68 9.474920 TGAATATGCAACCTTTGAAAGTTTTAG 57.525 29.630 4.02 0.00 0.00 1.85
68 69 9.476202 GAATATGCAACCTTTGAAAGTTTTAGT 57.524 29.630 4.02 0.00 0.00 2.24
69 70 8.816640 ATATGCAACCTTTGAAAGTTTTAGTG 57.183 30.769 4.02 0.00 0.00 2.74
70 71 6.031751 TGCAACCTTTGAAAGTTTTAGTGT 57.968 33.333 4.02 0.00 0.00 3.55
71 72 5.866633 TGCAACCTTTGAAAGTTTTAGTGTG 59.133 36.000 4.02 0.00 0.00 3.82
72 73 5.290885 GCAACCTTTGAAAGTTTTAGTGTGG 59.709 40.000 4.02 0.00 0.00 4.17
73 74 6.626302 CAACCTTTGAAAGTTTTAGTGTGGA 58.374 36.000 4.02 0.00 0.00 4.02
74 75 6.844097 ACCTTTGAAAGTTTTAGTGTGGAA 57.156 33.333 4.02 0.00 0.00 3.53
75 76 7.418337 ACCTTTGAAAGTTTTAGTGTGGAAT 57.582 32.000 4.02 0.00 0.00 3.01
76 77 7.264947 ACCTTTGAAAGTTTTAGTGTGGAATG 58.735 34.615 4.02 0.00 0.00 2.67
77 78 7.093509 ACCTTTGAAAGTTTTAGTGTGGAATGT 60.094 33.333 4.02 0.00 0.00 2.71
78 79 7.763985 CCTTTGAAAGTTTTAGTGTGGAATGTT 59.236 33.333 4.02 0.00 0.00 2.71
79 80 8.696410 TTTGAAAGTTTTAGTGTGGAATGTTC 57.304 30.769 0.00 0.00 0.00 3.18
80 81 6.491394 TGAAAGTTTTAGTGTGGAATGTTCG 58.509 36.000 0.00 0.00 0.00 3.95
81 82 6.094325 TGAAAGTTTTAGTGTGGAATGTTCGT 59.906 34.615 0.00 0.00 0.00 3.85
82 83 5.418310 AGTTTTAGTGTGGAATGTTCGTG 57.582 39.130 0.00 0.00 0.00 4.35
83 84 4.274950 AGTTTTAGTGTGGAATGTTCGTGG 59.725 41.667 0.00 0.00 0.00 4.94
84 85 2.465860 TAGTGTGGAATGTTCGTGGG 57.534 50.000 0.00 0.00 0.00 4.61
85 86 0.889186 AGTGTGGAATGTTCGTGGGC 60.889 55.000 0.00 0.00 0.00 5.36
86 87 0.889186 GTGTGGAATGTTCGTGGGCT 60.889 55.000 0.00 0.00 0.00 5.19
87 88 0.179004 TGTGGAATGTTCGTGGGCTT 60.179 50.000 0.00 0.00 0.00 4.35
88 89 1.072489 TGTGGAATGTTCGTGGGCTTA 59.928 47.619 0.00 0.00 0.00 3.09
89 90 2.156098 GTGGAATGTTCGTGGGCTTAA 58.844 47.619 0.00 0.00 0.00 1.85
90 91 2.752903 GTGGAATGTTCGTGGGCTTAAT 59.247 45.455 0.00 0.00 0.00 1.40
91 92 2.752354 TGGAATGTTCGTGGGCTTAATG 59.248 45.455 0.00 0.00 0.00 1.90
92 93 2.479560 GGAATGTTCGTGGGCTTAATGC 60.480 50.000 0.00 0.00 41.94 3.56
93 94 1.832883 ATGTTCGTGGGCTTAATGCA 58.167 45.000 0.00 0.00 45.15 3.96
94 95 1.610363 TGTTCGTGGGCTTAATGCAA 58.390 45.000 0.00 0.00 45.15 4.08
95 96 1.539388 TGTTCGTGGGCTTAATGCAAG 59.461 47.619 0.00 0.00 45.15 4.01
96 97 1.135402 GTTCGTGGGCTTAATGCAAGG 60.135 52.381 0.00 0.00 45.15 3.61
97 98 0.679640 TCGTGGGCTTAATGCAAGGG 60.680 55.000 0.00 0.00 45.15 3.95
98 99 1.517361 GTGGGCTTAATGCAAGGGC 59.483 57.895 0.00 0.00 45.15 5.19
99 100 0.972471 GTGGGCTTAATGCAAGGGCT 60.972 55.000 0.00 0.00 45.15 5.19
100 101 0.628522 TGGGCTTAATGCAAGGGCTA 59.371 50.000 0.00 0.00 45.15 3.93
101 102 1.322442 GGGCTTAATGCAAGGGCTAG 58.678 55.000 0.00 0.00 45.15 3.42
102 103 1.322442 GGCTTAATGCAAGGGCTAGG 58.678 55.000 0.00 0.00 45.15 3.02
103 104 1.133792 GGCTTAATGCAAGGGCTAGGA 60.134 52.381 0.00 0.00 45.15 2.94
104 105 2.225467 GCTTAATGCAAGGGCTAGGAG 58.775 52.381 0.00 0.00 42.31 3.69
105 106 2.856222 CTTAATGCAAGGGCTAGGAGG 58.144 52.381 0.00 0.00 41.91 4.30
106 107 2.190398 TAATGCAAGGGCTAGGAGGA 57.810 50.000 0.00 0.00 41.91 3.71
107 108 1.298953 AATGCAAGGGCTAGGAGGAA 58.701 50.000 0.00 0.00 41.91 3.36
108 109 1.527457 ATGCAAGGGCTAGGAGGAAT 58.473 50.000 0.00 0.00 41.91 3.01
109 110 0.548031 TGCAAGGGCTAGGAGGAATG 59.452 55.000 0.00 0.00 41.91 2.67
110 111 0.548510 GCAAGGGCTAGGAGGAATGT 59.451 55.000 0.00 0.00 36.96 2.71
111 112 1.064389 GCAAGGGCTAGGAGGAATGTT 60.064 52.381 0.00 0.00 36.96 2.71
112 113 2.648059 CAAGGGCTAGGAGGAATGTTG 58.352 52.381 0.00 0.00 0.00 3.33
113 114 1.972588 AGGGCTAGGAGGAATGTTGT 58.027 50.000 0.00 0.00 0.00 3.32
114 115 3.130734 AGGGCTAGGAGGAATGTTGTA 57.869 47.619 0.00 0.00 0.00 2.41
115 116 3.669949 AGGGCTAGGAGGAATGTTGTAT 58.330 45.455 0.00 0.00 0.00 2.29
116 117 4.047883 AGGGCTAGGAGGAATGTTGTATT 58.952 43.478 0.00 0.00 0.00 1.89
117 118 4.103311 AGGGCTAGGAGGAATGTTGTATTC 59.897 45.833 0.00 0.00 0.00 1.75
118 119 4.390264 GGCTAGGAGGAATGTTGTATTCC 58.610 47.826 10.02 10.02 46.01 3.01
125 126 3.697166 GGAATGTTGTATTCCAGGTGGT 58.303 45.455 12.52 0.00 45.21 4.16
126 127 3.443681 GGAATGTTGTATTCCAGGTGGTG 59.556 47.826 12.52 0.00 45.21 4.17
127 128 4.331968 GAATGTTGTATTCCAGGTGGTGA 58.668 43.478 0.00 0.00 36.34 4.02
128 129 3.134574 TGTTGTATTCCAGGTGGTGAC 57.865 47.619 0.00 0.00 36.34 3.67
129 130 2.439880 TGTTGTATTCCAGGTGGTGACA 59.560 45.455 0.00 0.00 36.34 3.58
130 131 3.074412 GTTGTATTCCAGGTGGTGACAG 58.926 50.000 0.00 0.00 44.46 3.51
131 132 2.334977 TGTATTCCAGGTGGTGACAGT 58.665 47.619 0.00 0.00 44.46 3.55
132 133 2.038426 TGTATTCCAGGTGGTGACAGTG 59.962 50.000 0.00 0.00 44.46 3.66
133 134 1.140312 ATTCCAGGTGGTGACAGTGT 58.860 50.000 0.00 0.00 44.46 3.55
134 135 0.468226 TTCCAGGTGGTGACAGTGTC 59.532 55.000 16.68 16.68 44.46 3.67
135 136 1.071471 CCAGGTGGTGACAGTGTCC 59.929 63.158 20.43 11.41 44.46 4.02
136 137 1.695114 CCAGGTGGTGACAGTGTCCA 61.695 60.000 20.43 10.17 44.46 4.02
137 138 0.180171 CAGGTGGTGACAGTGTCCAA 59.820 55.000 20.43 2.89 44.46 3.53
138 139 1.140312 AGGTGGTGACAGTGTCCAAT 58.860 50.000 20.43 2.87 44.46 3.16
139 140 1.072331 AGGTGGTGACAGTGTCCAATC 59.928 52.381 20.43 6.10 44.46 2.67
140 141 1.523758 GTGGTGACAGTGTCCAATCC 58.476 55.000 20.43 16.22 44.46 3.01
141 142 0.034756 TGGTGACAGTGTCCAATCCG 59.965 55.000 20.43 0.00 35.01 4.18
142 143 0.673644 GGTGACAGTGTCCAATCCGG 60.674 60.000 20.43 0.00 0.00 5.14
143 144 1.003839 TGACAGTGTCCAATCCGGC 60.004 57.895 20.43 0.00 33.14 6.13
144 145 2.047274 ACAGTGTCCAATCCGGCG 60.047 61.111 0.00 0.00 33.14 6.46
145 146 2.264480 CAGTGTCCAATCCGGCGA 59.736 61.111 9.30 0.00 33.14 5.54
146 147 1.153369 CAGTGTCCAATCCGGCGAT 60.153 57.895 9.30 0.00 33.14 4.58
147 148 0.744414 CAGTGTCCAATCCGGCGATT 60.744 55.000 9.30 3.38 39.39 3.34
153 154 2.767536 CAATCCGGCGATTGTCTGT 58.232 52.632 9.30 0.00 46.97 3.41
154 155 0.652592 CAATCCGGCGATTGTCTGTC 59.347 55.000 9.30 0.00 46.97 3.51
155 156 0.537188 AATCCGGCGATTGTCTGTCT 59.463 50.000 9.30 0.00 37.33 3.41
156 157 0.537188 ATCCGGCGATTGTCTGTCTT 59.463 50.000 9.30 0.00 0.00 3.01
157 158 0.108804 TCCGGCGATTGTCTGTCTTC 60.109 55.000 9.30 0.00 0.00 2.87
158 159 0.389817 CCGGCGATTGTCTGTCTTCA 60.390 55.000 9.30 0.00 0.00 3.02
159 160 1.428448 CGGCGATTGTCTGTCTTCAA 58.572 50.000 0.00 0.00 0.00 2.69
160 161 1.798223 CGGCGATTGTCTGTCTTCAAA 59.202 47.619 0.00 0.00 0.00 2.69
161 162 2.223144 CGGCGATTGTCTGTCTTCAAAA 59.777 45.455 0.00 0.00 0.00 2.44
162 163 3.303725 CGGCGATTGTCTGTCTTCAAAAA 60.304 43.478 0.00 0.00 0.00 1.94
184 185 8.997621 AAAAACTAAGCTACAAGATGTATCGA 57.002 30.769 0.00 0.00 31.66 3.59
185 186 9.601217 AAAAACTAAGCTACAAGATGTATCGAT 57.399 29.630 2.16 2.16 31.66 3.59
186 187 8.581057 AAACTAAGCTACAAGATGTATCGATG 57.419 34.615 8.54 0.00 31.66 3.84
187 188 7.511959 ACTAAGCTACAAGATGTATCGATGA 57.488 36.000 8.54 0.00 31.66 2.92
188 189 7.941919 ACTAAGCTACAAGATGTATCGATGAA 58.058 34.615 8.54 0.00 31.66 2.57
189 190 7.863375 ACTAAGCTACAAGATGTATCGATGAAC 59.137 37.037 8.54 0.00 31.66 3.18
190 191 6.149129 AGCTACAAGATGTATCGATGAACA 57.851 37.500 8.54 5.75 31.66 3.18
191 192 6.753180 AGCTACAAGATGTATCGATGAACAT 58.247 36.000 12.55 12.55 39.00 2.71
192 193 7.212976 AGCTACAAGATGTATCGATGAACATT 58.787 34.615 13.63 2.85 36.48 2.71
193 194 7.170489 AGCTACAAGATGTATCGATGAACATTG 59.830 37.037 13.63 12.09 36.48 2.82
194 195 7.042456 GCTACAAGATGTATCGATGAACATTGT 60.042 37.037 17.77 17.77 36.48 2.71
195 196 7.615582 ACAAGATGTATCGATGAACATTGTT 57.384 32.000 13.63 0.63 36.48 2.83
196 197 8.044060 ACAAGATGTATCGATGAACATTGTTT 57.956 30.769 13.63 7.61 36.48 2.83
197 198 7.964559 ACAAGATGTATCGATGAACATTGTTTG 59.035 33.333 13.63 17.25 36.48 2.93
198 199 7.019774 AGATGTATCGATGAACATTGTTTGG 57.980 36.000 13.63 0.00 36.48 3.28
199 200 4.980590 TGTATCGATGAACATTGTTTGGC 58.019 39.130 8.54 0.00 0.00 4.52
200 201 4.457257 TGTATCGATGAACATTGTTTGGCA 59.543 37.500 8.54 0.00 0.00 4.92
201 202 3.998099 TCGATGAACATTGTTTGGCAA 57.002 38.095 3.08 0.00 41.89 4.52
216 217 1.388547 GGCAATGCCTCGGAAATACA 58.611 50.000 18.47 0.00 46.69 2.29
217 218 1.956477 GGCAATGCCTCGGAAATACAT 59.044 47.619 18.47 0.00 46.69 2.29
218 219 3.146066 GGCAATGCCTCGGAAATACATA 58.854 45.455 18.47 0.00 46.69 2.29
219 220 3.758554 GGCAATGCCTCGGAAATACATAT 59.241 43.478 18.47 0.00 46.69 1.78
220 221 4.379813 GGCAATGCCTCGGAAATACATATG 60.380 45.833 18.47 0.00 46.69 1.78
221 222 4.455533 GCAATGCCTCGGAAATACATATGA 59.544 41.667 10.38 0.00 0.00 2.15
222 223 5.391310 GCAATGCCTCGGAAATACATATGAG 60.391 44.000 10.38 0.00 0.00 2.90
223 224 5.745312 ATGCCTCGGAAATACATATGAGA 57.255 39.130 10.38 0.00 0.00 3.27
224 225 5.545063 TGCCTCGGAAATACATATGAGAA 57.455 39.130 10.38 0.00 0.00 2.87
225 226 5.541845 TGCCTCGGAAATACATATGAGAAG 58.458 41.667 10.38 0.00 0.00 2.85
226 227 5.070446 TGCCTCGGAAATACATATGAGAAGT 59.930 40.000 10.38 0.00 0.00 3.01
227 228 5.992217 GCCTCGGAAATACATATGAGAAGTT 59.008 40.000 10.38 0.00 0.00 2.66
228 229 6.483640 GCCTCGGAAATACATATGAGAAGTTT 59.516 38.462 10.38 2.93 0.00 2.66
229 230 7.012421 GCCTCGGAAATACATATGAGAAGTTTT 59.988 37.037 10.38 0.10 0.00 2.43
230 231 8.893727 CCTCGGAAATACATATGAGAAGTTTTT 58.106 33.333 10.38 0.00 0.00 1.94
245 246 4.275524 TTTTTACGTACCGGCGGG 57.724 55.556 31.78 15.34 40.11 6.13
246 247 1.668294 TTTTTACGTACCGGCGGGA 59.332 52.632 31.78 21.84 36.97 5.14
247 248 0.389687 TTTTTACGTACCGGCGGGAG 60.390 55.000 31.78 22.02 36.97 4.30
248 249 2.224495 TTTTACGTACCGGCGGGAGG 62.224 60.000 31.78 29.84 36.97 4.30
261 262 3.083997 GGAGGCTCGTGGTGGGAT 61.084 66.667 8.69 0.00 0.00 3.85
262 263 2.670148 GGAGGCTCGTGGTGGGATT 61.670 63.158 8.69 0.00 0.00 3.01
263 264 1.299976 GAGGCTCGTGGTGGGATTT 59.700 57.895 0.00 0.00 0.00 2.17
264 265 0.322546 GAGGCTCGTGGTGGGATTTT 60.323 55.000 0.00 0.00 0.00 1.82
265 266 0.609131 AGGCTCGTGGTGGGATTTTG 60.609 55.000 0.00 0.00 0.00 2.44
266 267 1.595093 GGCTCGTGGTGGGATTTTGG 61.595 60.000 0.00 0.00 0.00 3.28
267 268 0.893727 GCTCGTGGTGGGATTTTGGT 60.894 55.000 0.00 0.00 0.00 3.67
268 269 0.881118 CTCGTGGTGGGATTTTGGTG 59.119 55.000 0.00 0.00 0.00 4.17
269 270 0.538516 TCGTGGTGGGATTTTGGTGG 60.539 55.000 0.00 0.00 0.00 4.61
270 271 1.671166 GTGGTGGGATTTTGGTGGC 59.329 57.895 0.00 0.00 0.00 5.01
271 272 0.831711 GTGGTGGGATTTTGGTGGCT 60.832 55.000 0.00 0.00 0.00 4.75
272 273 0.105246 TGGTGGGATTTTGGTGGCTT 60.105 50.000 0.00 0.00 0.00 4.35
273 274 0.321346 GGTGGGATTTTGGTGGCTTG 59.679 55.000 0.00 0.00 0.00 4.01
274 275 0.321346 GTGGGATTTTGGTGGCTTGG 59.679 55.000 0.00 0.00 0.00 3.61
275 276 0.835543 TGGGATTTTGGTGGCTTGGG 60.836 55.000 0.00 0.00 0.00 4.12
276 277 0.544120 GGGATTTTGGTGGCTTGGGA 60.544 55.000 0.00 0.00 0.00 4.37
277 278 1.571955 GGATTTTGGTGGCTTGGGAT 58.428 50.000 0.00 0.00 0.00 3.85
278 279 1.207811 GGATTTTGGTGGCTTGGGATG 59.792 52.381 0.00 0.00 0.00 3.51
279 280 2.178580 GATTTTGGTGGCTTGGGATGA 58.821 47.619 0.00 0.00 0.00 2.92
280 281 1.337118 TTTTGGTGGCTTGGGATGAC 58.663 50.000 0.00 0.00 0.00 3.06
281 282 0.482446 TTTGGTGGCTTGGGATGACT 59.518 50.000 0.00 0.00 0.00 3.41
282 283 0.038166 TTGGTGGCTTGGGATGACTC 59.962 55.000 0.00 0.00 0.00 3.36
283 284 1.077429 GGTGGCTTGGGATGACTCC 60.077 63.158 0.00 0.00 41.26 3.85
284 285 1.685224 GTGGCTTGGGATGACTCCA 59.315 57.895 0.00 0.00 44.08 3.86
285 286 0.257039 GTGGCTTGGGATGACTCCAT 59.743 55.000 0.00 0.00 44.08 3.41
286 287 0.548031 TGGCTTGGGATGACTCCATC 59.452 55.000 0.00 0.00 46.50 3.51
291 292 0.253113 TGGGATGACTCCATCACCCA 60.253 55.000 0.00 0.00 44.22 4.51
292 293 0.918983 GGGATGACTCCATCACCCAA 59.081 55.000 7.59 0.00 44.22 4.12
293 294 1.408822 GGGATGACTCCATCACCCAAC 60.409 57.143 7.59 0.00 44.22 3.77
294 295 3.758021 GGGATGACTCCATCACCCAACT 61.758 54.545 7.59 0.00 44.22 3.16
295 296 4.458319 GGGATGACTCCATCACCCAACTA 61.458 52.174 7.59 0.00 44.22 2.24
296 297 3.798202 GATGACTCCATCACCCAACTAC 58.202 50.000 0.00 0.00 46.48 2.73
297 298 1.906574 TGACTCCATCACCCAACTACC 59.093 52.381 0.00 0.00 29.99 3.18
298 299 1.906574 GACTCCATCACCCAACTACCA 59.093 52.381 0.00 0.00 0.00 3.25
299 300 2.304761 GACTCCATCACCCAACTACCAA 59.695 50.000 0.00 0.00 0.00 3.67
300 301 2.714250 ACTCCATCACCCAACTACCAAA 59.286 45.455 0.00 0.00 0.00 3.28
301 302 3.081804 CTCCATCACCCAACTACCAAAC 58.918 50.000 0.00 0.00 0.00 2.93
302 303 2.714250 TCCATCACCCAACTACCAAACT 59.286 45.455 0.00 0.00 0.00 2.66
303 304 3.081804 CCATCACCCAACTACCAAACTC 58.918 50.000 0.00 0.00 0.00 3.01
304 305 3.497763 CCATCACCCAACTACCAAACTCA 60.498 47.826 0.00 0.00 0.00 3.41
305 306 3.202829 TCACCCAACTACCAAACTCAC 57.797 47.619 0.00 0.00 0.00 3.51
306 307 2.506231 TCACCCAACTACCAAACTCACA 59.494 45.455 0.00 0.00 0.00 3.58
307 308 3.137544 TCACCCAACTACCAAACTCACAT 59.862 43.478 0.00 0.00 0.00 3.21
308 309 3.888930 CACCCAACTACCAAACTCACATT 59.111 43.478 0.00 0.00 0.00 2.71
309 310 5.067273 CACCCAACTACCAAACTCACATTA 58.933 41.667 0.00 0.00 0.00 1.90
310 311 5.048991 CACCCAACTACCAAACTCACATTAC 60.049 44.000 0.00 0.00 0.00 1.89
311 312 5.067273 CCCAACTACCAAACTCACATTACA 58.933 41.667 0.00 0.00 0.00 2.41
312 313 5.048991 CCCAACTACCAAACTCACATTACAC 60.049 44.000 0.00 0.00 0.00 2.90
313 314 5.763204 CCAACTACCAAACTCACATTACACT 59.237 40.000 0.00 0.00 0.00 3.55
314 315 6.932400 CCAACTACCAAACTCACATTACACTA 59.068 38.462 0.00 0.00 0.00 2.74
315 316 7.442969 CCAACTACCAAACTCACATTACACTAA 59.557 37.037 0.00 0.00 0.00 2.24
316 317 7.958053 ACTACCAAACTCACATTACACTAAC 57.042 36.000 0.00 0.00 0.00 2.34
317 318 6.932960 ACTACCAAACTCACATTACACTAACC 59.067 38.462 0.00 0.00 0.00 2.85
318 319 5.686753 ACCAAACTCACATTACACTAACCA 58.313 37.500 0.00 0.00 0.00 3.67
319 320 6.303839 ACCAAACTCACATTACACTAACCAT 58.696 36.000 0.00 0.00 0.00 3.55
320 321 7.455058 ACCAAACTCACATTACACTAACCATA 58.545 34.615 0.00 0.00 0.00 2.74
321 322 8.107095 ACCAAACTCACATTACACTAACCATAT 58.893 33.333 0.00 0.00 0.00 1.78
322 323 9.607988 CCAAACTCACATTACACTAACCATATA 57.392 33.333 0.00 0.00 0.00 0.86
330 331 9.273016 ACATTACACTAACCATATAATGACTGC 57.727 33.333 8.79 0.00 36.93 4.40
331 332 9.271828 CATTACACTAACCATATAATGACTGCA 57.728 33.333 0.00 0.00 35.97 4.41
332 333 8.887036 TTACACTAACCATATAATGACTGCAG 57.113 34.615 13.48 13.48 0.00 4.41
333 334 6.889198 ACACTAACCATATAATGACTGCAGT 58.111 36.000 21.88 21.88 0.00 4.40
334 335 7.338710 ACACTAACCATATAATGACTGCAGTT 58.661 34.615 22.65 7.90 0.00 3.16
335 336 7.280876 ACACTAACCATATAATGACTGCAGTTG 59.719 37.037 22.65 13.01 0.00 3.16
336 337 7.280876 CACTAACCATATAATGACTGCAGTTGT 59.719 37.037 22.65 10.04 0.00 3.32
337 338 6.683974 AACCATATAATGACTGCAGTTGTC 57.316 37.500 22.65 9.35 35.21 3.18
338 339 5.744171 ACCATATAATGACTGCAGTTGTCA 58.256 37.500 22.65 15.31 46.58 3.58
339 340 6.179756 ACCATATAATGACTGCAGTTGTCAA 58.820 36.000 22.65 6.56 45.82 3.18
340 341 6.317140 ACCATATAATGACTGCAGTTGTCAAG 59.683 38.462 22.65 7.40 45.82 3.02
341 342 6.317140 CCATATAATGACTGCAGTTGTCAAGT 59.683 38.462 22.65 9.63 45.82 3.16
342 343 3.976793 AATGACTGCAGTTGTCAAGTG 57.023 42.857 22.65 14.98 45.82 3.16
347 348 3.343972 CAGTTGTCAAGTGCCCGG 58.656 61.111 7.46 0.00 0.00 5.73
348 349 1.227823 CAGTTGTCAAGTGCCCGGA 60.228 57.895 0.73 0.00 0.00 5.14
349 350 1.071471 AGTTGTCAAGTGCCCGGAG 59.929 57.895 0.73 0.00 0.00 4.63
362 363 3.842923 CGGAGGATGAGCAGGCGT 61.843 66.667 0.00 0.00 0.00 5.68
363 364 2.202987 GGAGGATGAGCAGGCGTG 60.203 66.667 1.01 1.01 0.00 5.34
364 365 2.202987 GAGGATGAGCAGGCGTGG 60.203 66.667 8.72 0.00 0.00 4.94
365 366 3.005539 AGGATGAGCAGGCGTGGT 61.006 61.111 11.42 11.42 37.01 4.16
366 367 2.821366 GGATGAGCAGGCGTGGTG 60.821 66.667 16.83 0.00 33.41 4.17
367 368 2.821366 GATGAGCAGGCGTGGTGG 60.821 66.667 16.83 0.00 33.41 4.61
375 376 2.568090 GGCGTGGTGGCTTTCATG 59.432 61.111 0.00 0.00 40.72 3.07
376 377 2.268076 GGCGTGGTGGCTTTCATGT 61.268 57.895 0.00 0.00 40.72 3.21
377 378 1.081242 GCGTGGTGGCTTTCATGTG 60.081 57.895 0.00 0.00 0.00 3.21
378 379 1.795170 GCGTGGTGGCTTTCATGTGT 61.795 55.000 0.00 0.00 0.00 3.72
379 380 0.238289 CGTGGTGGCTTTCATGTGTC 59.762 55.000 0.00 0.00 0.00 3.67
380 381 1.609208 GTGGTGGCTTTCATGTGTCT 58.391 50.000 0.00 0.00 0.00 3.41
381 382 2.778299 GTGGTGGCTTTCATGTGTCTA 58.222 47.619 0.00 0.00 0.00 2.59
382 383 3.347216 GTGGTGGCTTTCATGTGTCTAT 58.653 45.455 0.00 0.00 0.00 1.98
383 384 3.127548 GTGGTGGCTTTCATGTGTCTATG 59.872 47.826 0.00 0.00 0.00 2.23
384 385 2.684881 GGTGGCTTTCATGTGTCTATGG 59.315 50.000 0.00 0.00 0.00 2.74
385 386 2.098117 GTGGCTTTCATGTGTCTATGGC 59.902 50.000 0.00 0.00 0.00 4.40
386 387 1.678101 GGCTTTCATGTGTCTATGGCC 59.322 52.381 0.00 0.00 0.00 5.36
387 388 1.678101 GCTTTCATGTGTCTATGGCCC 59.322 52.381 0.00 0.00 0.00 5.80
388 389 2.945440 GCTTTCATGTGTCTATGGCCCA 60.945 50.000 0.00 0.00 0.00 5.36
389 390 2.418368 TTCATGTGTCTATGGCCCAC 57.582 50.000 0.00 0.26 0.00 4.61
390 391 1.284313 TCATGTGTCTATGGCCCACA 58.716 50.000 13.23 13.23 42.70 4.17
391 392 1.632920 TCATGTGTCTATGGCCCACAA 59.367 47.619 14.58 0.00 41.91 3.33
392 393 2.019249 CATGTGTCTATGGCCCACAAG 58.981 52.381 14.58 7.71 41.91 3.16
393 394 1.357137 TGTGTCTATGGCCCACAAGA 58.643 50.000 9.07 0.00 36.25 3.02
394 395 1.915489 TGTGTCTATGGCCCACAAGAT 59.085 47.619 9.07 0.00 36.25 2.40
395 396 2.292267 GTGTCTATGGCCCACAAGATG 58.708 52.381 0.00 0.00 0.00 2.90
396 397 2.092968 GTGTCTATGGCCCACAAGATGA 60.093 50.000 0.00 0.00 0.00 2.92
458 459 1.292541 GGAAGTCTTCCCGCGAACT 59.707 57.895 19.59 0.00 44.30 3.01
459 460 0.736672 GGAAGTCTTCCCGCGAACTC 60.737 60.000 19.59 0.00 44.30 3.01
481 482 2.029728 GTCGATGAAGGTTTGCAGATCG 59.970 50.000 0.00 0.00 35.22 3.69
486 487 2.237143 TGAAGGTTTGCAGATCGATCCT 59.763 45.455 21.66 7.75 30.99 3.24
510 511 1.227556 GACGGCGATAATGCAGGGT 60.228 57.895 16.62 0.00 36.28 4.34
557 558 2.472909 GCGATCTTGGCGGGAAAGG 61.473 63.158 0.00 0.00 0.00 3.11
572 573 2.229792 GAAAGGCAGACAACACATCCA 58.770 47.619 0.00 0.00 0.00 3.41
574 575 1.059098 AGGCAGACAACACATCCAGA 58.941 50.000 0.00 0.00 0.00 3.86
665 668 5.571658 GCCTCTCCAAAGGTCTTCAGAATTA 60.572 44.000 0.00 0.00 38.79 1.40
675 678 6.936279 AGGTCTTCAGAATTACAGAAATCGA 58.064 36.000 0.00 0.00 0.00 3.59
731 734 1.517694 GCATCGTCGGCGTAAAGGA 60.518 57.895 10.18 0.00 39.49 3.36
764 767 0.608856 TGCCGTCCTTGCATGAATGT 60.609 50.000 0.00 0.00 32.85 2.71
868 893 3.673746 TTGCGTGTCTGAACTTTCTTG 57.326 42.857 0.00 0.00 0.00 3.02
885 910 2.167662 CTTGCGGGGTTTCCATTAAGT 58.832 47.619 0.00 0.00 34.36 2.24
959 984 2.202676 GTCGGCTTCCTCTGCTCG 60.203 66.667 0.00 0.00 0.00 5.03
1163 1205 2.367512 CTCCTCCCCCTCCCCTTG 60.368 72.222 0.00 0.00 0.00 3.61
2441 2483 5.643379 TTGCCTGCTGTAGAATTTTTAGG 57.357 39.130 0.00 0.00 0.00 2.69
2443 2485 3.181486 GCCTGCTGTAGAATTTTTAGGGC 60.181 47.826 0.00 0.00 0.00 5.19
2763 2805 3.528597 AGTCTTTCAGCCTATCGTTCC 57.471 47.619 0.00 0.00 0.00 3.62
3299 3341 3.941483 AGTGCACCTATACAGTTGAATGC 59.059 43.478 14.63 0.00 0.00 3.56
3318 3360 2.750948 GCGGAAAAGATATAGGACGCA 58.249 47.619 0.00 0.00 44.52 5.24
3348 3390 0.179108 GATCGTTCGTTGGGGGAGAG 60.179 60.000 0.00 0.00 0.00 3.20
3505 3547 4.171005 CTGTTTGCCTCATATGCTTTGTG 58.829 43.478 0.00 0.00 0.00 3.33
3542 3584 5.856126 TCAAGCAACTAATACGAACAAGG 57.144 39.130 0.00 0.00 0.00 3.61
3581 3623 0.609662 AAGAAACCCATGCCATGTGC 59.390 50.000 3.63 0.00 41.77 4.57
3706 3748 1.607801 CTCCTCTCGCATGGTGTGGA 61.608 60.000 0.00 1.54 32.57 4.02
3872 3916 2.116125 GCCAGACCTTGTTGCCCT 59.884 61.111 0.00 0.00 0.00 5.19
3894 3938 2.046892 CTGGTGCCGCTAGCTTGT 60.047 61.111 13.93 0.00 44.23 3.16
3955 3999 1.952635 GACGTCGGGTGTTGTGGAC 60.953 63.158 0.00 0.00 0.00 4.02
4084 4128 1.723608 CTGGGCGCGGCATAATGAAA 61.724 55.000 34.30 7.59 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.256912 ACGTTCCACACTAAAACTTTCAAA 57.743 33.333 0.00 0.00 0.00 2.69
2 3 5.883503 ACGTTCCACACTAAAACTTTCAA 57.116 34.783 0.00 0.00 0.00 2.69
3 4 5.446206 CGAACGTTCCACACTAAAACTTTCA 60.446 40.000 22.07 0.00 33.31 2.69
4 5 4.959757 CGAACGTTCCACACTAAAACTTTC 59.040 41.667 22.07 0.00 31.52 2.62
5 6 4.392754 ACGAACGTTCCACACTAAAACTTT 59.607 37.500 22.07 0.00 0.00 2.66
6 7 3.934579 ACGAACGTTCCACACTAAAACTT 59.065 39.130 22.07 0.00 0.00 2.66
7 8 3.307782 CACGAACGTTCCACACTAAAACT 59.692 43.478 22.07 0.00 0.00 2.66
8 9 3.544637 CCACGAACGTTCCACACTAAAAC 60.545 47.826 22.07 0.00 0.00 2.43
9 10 2.608546 CCACGAACGTTCCACACTAAAA 59.391 45.455 22.07 0.00 0.00 1.52
10 11 2.203401 CCACGAACGTTCCACACTAAA 58.797 47.619 22.07 0.00 0.00 1.85
11 12 1.538634 CCCACGAACGTTCCACACTAA 60.539 52.381 22.07 0.00 0.00 2.24
12 13 0.032403 CCCACGAACGTTCCACACTA 59.968 55.000 22.07 0.00 0.00 2.74
13 14 1.227438 CCCACGAACGTTCCACACT 60.227 57.895 22.07 0.00 0.00 3.55
14 15 2.888998 GCCCACGAACGTTCCACAC 61.889 63.158 22.07 5.10 0.00 3.82
15 16 2.589442 GCCCACGAACGTTCCACA 60.589 61.111 22.07 0.00 0.00 4.17
16 17 1.441732 AAAGCCCACGAACGTTCCAC 61.442 55.000 22.07 7.52 0.00 4.02
17 18 1.153127 AAAGCCCACGAACGTTCCA 60.153 52.632 22.07 0.00 0.00 3.53
18 19 1.161563 TGAAAGCCCACGAACGTTCC 61.162 55.000 22.07 7.98 0.00 3.62
19 20 0.658897 TTGAAAGCCCACGAACGTTC 59.341 50.000 18.47 18.47 0.00 3.95
20 21 1.096416 TTTGAAAGCCCACGAACGTT 58.904 45.000 0.00 0.00 0.00 3.99
21 22 1.096416 TTTTGAAAGCCCACGAACGT 58.904 45.000 0.00 0.00 0.00 3.99
22 23 2.050691 CATTTTGAAAGCCCACGAACG 58.949 47.619 0.00 0.00 0.00 3.95
23 24 3.363341 TCATTTTGAAAGCCCACGAAC 57.637 42.857 0.00 0.00 0.00 3.95
24 25 4.599047 ATTCATTTTGAAAGCCCACGAA 57.401 36.364 0.00 0.00 40.12 3.85
25 26 5.649557 CATATTCATTTTGAAAGCCCACGA 58.350 37.500 0.00 0.00 40.12 4.35
26 27 4.268405 GCATATTCATTTTGAAAGCCCACG 59.732 41.667 0.00 0.00 40.12 4.94
27 28 5.177326 TGCATATTCATTTTGAAAGCCCAC 58.823 37.500 0.00 0.00 40.12 4.61
28 29 5.417754 TGCATATTCATTTTGAAAGCCCA 57.582 34.783 0.00 0.00 40.12 5.36
29 30 5.065090 GGTTGCATATTCATTTTGAAAGCCC 59.935 40.000 0.00 0.00 40.12 5.19
30 31 5.876460 AGGTTGCATATTCATTTTGAAAGCC 59.124 36.000 0.00 0.00 40.12 4.35
31 32 6.973229 AGGTTGCATATTCATTTTGAAAGC 57.027 33.333 0.00 0.97 40.12 3.51
32 33 8.991026 TCAAAGGTTGCATATTCATTTTGAAAG 58.009 29.630 0.00 0.00 40.12 2.62
33 34 8.899427 TCAAAGGTTGCATATTCATTTTGAAA 57.101 26.923 0.00 0.00 40.12 2.69
34 35 8.899427 TTCAAAGGTTGCATATTCATTTTGAA 57.101 26.923 13.54 13.54 41.09 2.69
35 36 8.899427 TTTCAAAGGTTGCATATTCATTTTGA 57.101 26.923 0.00 6.29 33.11 2.69
36 37 8.776470 ACTTTCAAAGGTTGCATATTCATTTTG 58.224 29.630 1.31 0.00 0.00 2.44
37 38 8.907222 ACTTTCAAAGGTTGCATATTCATTTT 57.093 26.923 1.31 0.00 0.00 1.82
38 39 8.907222 AACTTTCAAAGGTTGCATATTCATTT 57.093 26.923 1.31 0.00 0.00 2.32
39 40 8.907222 AAACTTTCAAAGGTTGCATATTCATT 57.093 26.923 0.00 0.00 36.97 2.57
40 41 8.907222 AAAACTTTCAAAGGTTGCATATTCAT 57.093 26.923 0.00 0.00 37.47 2.57
41 42 9.474920 CTAAAACTTTCAAAGGTTGCATATTCA 57.525 29.630 0.00 0.00 37.47 2.57
42 43 9.476202 ACTAAAACTTTCAAAGGTTGCATATTC 57.524 29.630 0.00 0.00 37.47 1.75
43 44 9.260002 CACTAAAACTTTCAAAGGTTGCATATT 57.740 29.630 0.00 0.00 37.47 1.28
44 45 8.421002 ACACTAAAACTTTCAAAGGTTGCATAT 58.579 29.630 0.00 0.00 37.47 1.78
45 46 7.704472 CACACTAAAACTTTCAAAGGTTGCATA 59.296 33.333 0.00 0.00 37.47 3.14
46 47 6.534793 CACACTAAAACTTTCAAAGGTTGCAT 59.465 34.615 0.00 0.00 37.47 3.96
47 48 5.866633 CACACTAAAACTTTCAAAGGTTGCA 59.133 36.000 0.00 0.00 37.47 4.08
48 49 5.290885 CCACACTAAAACTTTCAAAGGTTGC 59.709 40.000 0.00 0.00 37.47 4.17
49 50 6.626302 TCCACACTAAAACTTTCAAAGGTTG 58.374 36.000 0.00 0.00 37.47 3.77
50 51 6.844097 TCCACACTAAAACTTTCAAAGGTT 57.156 33.333 1.31 0.00 41.00 3.50
51 52 6.844097 TTCCACACTAAAACTTTCAAAGGT 57.156 33.333 1.31 0.00 0.00 3.50
52 53 7.264947 ACATTCCACACTAAAACTTTCAAAGG 58.735 34.615 1.31 0.00 0.00 3.11
53 54 8.702163 AACATTCCACACTAAAACTTTCAAAG 57.298 30.769 0.00 0.00 0.00 2.77
54 55 7.486551 CGAACATTCCACACTAAAACTTTCAAA 59.513 33.333 0.00 0.00 0.00 2.69
55 56 6.970043 CGAACATTCCACACTAAAACTTTCAA 59.030 34.615 0.00 0.00 0.00 2.69
56 57 6.094325 ACGAACATTCCACACTAAAACTTTCA 59.906 34.615 0.00 0.00 0.00 2.69
57 58 6.413818 CACGAACATTCCACACTAAAACTTTC 59.586 38.462 0.00 0.00 0.00 2.62
58 59 6.262601 CACGAACATTCCACACTAAAACTTT 58.737 36.000 0.00 0.00 0.00 2.66
59 60 5.220970 CCACGAACATTCCACACTAAAACTT 60.221 40.000 0.00 0.00 0.00 2.66
60 61 4.274950 CCACGAACATTCCACACTAAAACT 59.725 41.667 0.00 0.00 0.00 2.66
61 62 4.533222 CCACGAACATTCCACACTAAAAC 58.467 43.478 0.00 0.00 0.00 2.43
62 63 3.566322 CCCACGAACATTCCACACTAAAA 59.434 43.478 0.00 0.00 0.00 1.52
63 64 3.142951 CCCACGAACATTCCACACTAAA 58.857 45.455 0.00 0.00 0.00 1.85
64 65 2.773487 CCCACGAACATTCCACACTAA 58.227 47.619 0.00 0.00 0.00 2.24
65 66 1.609580 GCCCACGAACATTCCACACTA 60.610 52.381 0.00 0.00 0.00 2.74
66 67 0.889186 GCCCACGAACATTCCACACT 60.889 55.000 0.00 0.00 0.00 3.55
67 68 0.889186 AGCCCACGAACATTCCACAC 60.889 55.000 0.00 0.00 0.00 3.82
68 69 0.179004 AAGCCCACGAACATTCCACA 60.179 50.000 0.00 0.00 0.00 4.17
69 70 1.816074 TAAGCCCACGAACATTCCAC 58.184 50.000 0.00 0.00 0.00 4.02
70 71 2.570415 TTAAGCCCACGAACATTCCA 57.430 45.000 0.00 0.00 0.00 3.53
71 72 2.479560 GCATTAAGCCCACGAACATTCC 60.480 50.000 0.00 0.00 37.23 3.01
72 73 2.163412 TGCATTAAGCCCACGAACATTC 59.837 45.455 0.00 0.00 44.83 2.67
73 74 2.166829 TGCATTAAGCCCACGAACATT 58.833 42.857 0.00 0.00 44.83 2.71
74 75 1.832883 TGCATTAAGCCCACGAACAT 58.167 45.000 0.00 0.00 44.83 2.71
75 76 1.539388 CTTGCATTAAGCCCACGAACA 59.461 47.619 0.00 0.00 44.83 3.18
76 77 1.135402 CCTTGCATTAAGCCCACGAAC 60.135 52.381 0.00 0.00 44.83 3.95
77 78 1.173043 CCTTGCATTAAGCCCACGAA 58.827 50.000 0.00 0.00 44.83 3.85
78 79 0.679640 CCCTTGCATTAAGCCCACGA 60.680 55.000 0.00 0.00 44.83 4.35
79 80 1.809207 CCCTTGCATTAAGCCCACG 59.191 57.895 0.00 0.00 44.83 4.94
80 81 0.972471 AGCCCTTGCATTAAGCCCAC 60.972 55.000 0.00 0.00 44.83 4.61
81 82 0.628522 TAGCCCTTGCATTAAGCCCA 59.371 50.000 0.00 0.00 44.83 5.36
82 83 1.322442 CTAGCCCTTGCATTAAGCCC 58.678 55.000 0.00 0.00 44.83 5.19
83 84 1.133792 TCCTAGCCCTTGCATTAAGCC 60.134 52.381 0.00 0.00 44.83 4.35
84 85 2.225467 CTCCTAGCCCTTGCATTAAGC 58.775 52.381 0.00 0.00 45.96 3.09
85 86 2.439507 TCCTCCTAGCCCTTGCATTAAG 59.560 50.000 0.00 0.00 41.13 1.85
86 87 2.487775 TCCTCCTAGCCCTTGCATTAA 58.512 47.619 0.00 0.00 41.13 1.40
87 88 2.190398 TCCTCCTAGCCCTTGCATTA 57.810 50.000 0.00 0.00 41.13 1.90
88 89 1.298953 TTCCTCCTAGCCCTTGCATT 58.701 50.000 0.00 0.00 41.13 3.56
89 90 1.144503 CATTCCTCCTAGCCCTTGCAT 59.855 52.381 0.00 0.00 41.13 3.96
90 91 0.548031 CATTCCTCCTAGCCCTTGCA 59.452 55.000 0.00 0.00 41.13 4.08
91 92 0.548510 ACATTCCTCCTAGCCCTTGC 59.451 55.000 0.00 0.00 37.95 4.01
92 93 2.025887 ACAACATTCCTCCTAGCCCTTG 60.026 50.000 0.00 0.00 0.00 3.61
93 94 2.279173 ACAACATTCCTCCTAGCCCTT 58.721 47.619 0.00 0.00 0.00 3.95
94 95 1.972588 ACAACATTCCTCCTAGCCCT 58.027 50.000 0.00 0.00 0.00 5.19
95 96 4.390264 GAATACAACATTCCTCCTAGCCC 58.610 47.826 0.00 0.00 0.00 5.19
96 97 4.141482 TGGAATACAACATTCCTCCTAGCC 60.141 45.833 15.17 0.00 45.87 3.93
97 98 5.036117 TGGAATACAACATTCCTCCTAGC 57.964 43.478 15.17 0.00 45.87 3.42
98 99 5.131142 ACCTGGAATACAACATTCCTCCTAG 59.869 44.000 15.17 6.03 45.87 3.02
99 100 5.036916 ACCTGGAATACAACATTCCTCCTA 58.963 41.667 15.17 0.00 45.87 2.94
100 101 3.852578 ACCTGGAATACAACATTCCTCCT 59.147 43.478 15.17 0.00 45.87 3.69
101 102 3.947834 CACCTGGAATACAACATTCCTCC 59.052 47.826 15.17 0.00 45.87 4.30
102 103 3.947834 CCACCTGGAATACAACATTCCTC 59.052 47.826 15.17 0.00 45.87 3.71
103 104 3.333680 ACCACCTGGAATACAACATTCCT 59.666 43.478 15.17 0.00 45.87 3.36
104 105 3.443681 CACCACCTGGAATACAACATTCC 59.556 47.826 0.00 8.74 45.89 3.01
105 106 4.156008 GTCACCACCTGGAATACAACATTC 59.844 45.833 0.00 0.00 38.94 2.67
106 107 4.079253 GTCACCACCTGGAATACAACATT 58.921 43.478 0.00 0.00 38.94 2.71
107 108 3.073798 TGTCACCACCTGGAATACAACAT 59.926 43.478 0.00 0.00 38.94 2.71
108 109 2.439880 TGTCACCACCTGGAATACAACA 59.560 45.455 0.00 0.00 38.94 3.33
109 110 3.074412 CTGTCACCACCTGGAATACAAC 58.926 50.000 0.00 0.00 38.94 3.32
110 111 2.708861 ACTGTCACCACCTGGAATACAA 59.291 45.455 0.00 0.00 38.94 2.41
111 112 2.038426 CACTGTCACCACCTGGAATACA 59.962 50.000 0.00 0.00 38.94 2.29
112 113 2.038557 ACACTGTCACCACCTGGAATAC 59.961 50.000 0.00 0.00 38.94 1.89
113 114 2.301870 GACACTGTCACCACCTGGAATA 59.698 50.000 0.00 0.00 38.94 1.75
114 115 1.072331 GACACTGTCACCACCTGGAAT 59.928 52.381 0.00 0.00 38.94 3.01
115 116 0.468226 GACACTGTCACCACCTGGAA 59.532 55.000 0.00 0.00 38.94 3.53
116 117 1.407656 GGACACTGTCACCACCTGGA 61.408 60.000 11.34 0.00 38.94 3.86
117 118 1.071471 GGACACTGTCACCACCTGG 59.929 63.158 11.34 0.00 42.17 4.45
118 119 0.180171 TTGGACACTGTCACCACCTG 59.820 55.000 11.34 0.00 33.68 4.00
119 120 1.072331 GATTGGACACTGTCACCACCT 59.928 52.381 11.34 0.00 33.68 4.00
120 121 1.523758 GATTGGACACTGTCACCACC 58.476 55.000 11.34 0.00 33.68 4.61
121 122 1.523758 GGATTGGACACTGTCACCAC 58.476 55.000 11.34 0.38 33.68 4.16
122 123 0.034756 CGGATTGGACACTGTCACCA 59.965 55.000 11.34 0.00 33.68 4.17
123 124 0.673644 CCGGATTGGACACTGTCACC 60.674 60.000 11.34 7.46 42.00 4.02
124 125 1.298859 GCCGGATTGGACACTGTCAC 61.299 60.000 5.05 1.70 42.00 3.67
125 126 1.003839 GCCGGATTGGACACTGTCA 60.004 57.895 5.05 0.00 42.00 3.58
126 127 2.100631 CGCCGGATTGGACACTGTC 61.101 63.158 5.05 0.00 42.00 3.51
127 128 1.899437 ATCGCCGGATTGGACACTGT 61.899 55.000 5.05 0.00 42.00 3.55
128 129 0.744414 AATCGCCGGATTGGACACTG 60.744 55.000 5.05 0.00 41.29 3.66
129 130 1.602237 AATCGCCGGATTGGACACT 59.398 52.632 5.05 0.00 41.29 3.55
130 131 4.218722 AATCGCCGGATTGGACAC 57.781 55.556 5.05 0.00 41.29 3.67
136 137 0.537188 AGACAGACAATCGCCGGATT 59.463 50.000 5.05 0.00 43.62 3.01
137 138 0.537188 AAGACAGACAATCGCCGGAT 59.463 50.000 5.05 0.00 0.00 4.18
138 139 0.108804 GAAGACAGACAATCGCCGGA 60.109 55.000 5.05 0.00 0.00 5.14
139 140 0.389817 TGAAGACAGACAATCGCCGG 60.390 55.000 0.00 0.00 0.00 6.13
140 141 1.428448 TTGAAGACAGACAATCGCCG 58.572 50.000 0.00 0.00 0.00 6.46
141 142 3.896648 TTTTGAAGACAGACAATCGCC 57.103 42.857 0.00 0.00 0.00 5.54
159 160 8.997621 TCGATACATCTTGTAGCTTAGTTTTT 57.002 30.769 0.00 0.00 37.12 1.94
160 161 9.035607 CATCGATACATCTTGTAGCTTAGTTTT 57.964 33.333 0.00 0.00 37.12 2.43
161 162 8.414003 TCATCGATACATCTTGTAGCTTAGTTT 58.586 33.333 0.00 0.00 37.12 2.66
162 163 7.941919 TCATCGATACATCTTGTAGCTTAGTT 58.058 34.615 0.00 0.00 37.12 2.24
163 164 7.511959 TCATCGATACATCTTGTAGCTTAGT 57.488 36.000 0.00 0.00 37.12 2.24
164 165 7.862873 TGTTCATCGATACATCTTGTAGCTTAG 59.137 37.037 0.00 0.00 37.12 2.18
165 166 7.712797 TGTTCATCGATACATCTTGTAGCTTA 58.287 34.615 0.00 0.00 37.12 3.09
166 167 6.573434 TGTTCATCGATACATCTTGTAGCTT 58.427 36.000 0.00 0.00 37.12 3.74
167 168 6.149129 TGTTCATCGATACATCTTGTAGCT 57.851 37.500 0.00 0.00 37.12 3.32
168 169 7.042456 ACAATGTTCATCGATACATCTTGTAGC 60.042 37.037 12.95 0.00 36.14 3.58
169 170 8.357796 ACAATGTTCATCGATACATCTTGTAG 57.642 34.615 12.95 4.29 36.14 2.74
170 171 8.716646 AACAATGTTCATCGATACATCTTGTA 57.283 30.769 15.55 0.00 37.24 2.41
171 172 7.615582 AACAATGTTCATCGATACATCTTGT 57.384 32.000 12.95 12.29 34.04 3.16
172 173 7.430211 CCAAACAATGTTCATCGATACATCTTG 59.570 37.037 12.95 14.54 34.04 3.02
173 174 7.475015 CCAAACAATGTTCATCGATACATCTT 58.525 34.615 12.95 6.39 34.04 2.40
174 175 6.458751 GCCAAACAATGTTCATCGATACATCT 60.459 38.462 12.95 3.31 34.04 2.90
175 176 5.682862 GCCAAACAATGTTCATCGATACATC 59.317 40.000 12.95 0.00 34.04 3.06
176 177 5.125257 TGCCAAACAATGTTCATCGATACAT 59.875 36.000 7.81 7.81 36.58 2.29
177 178 4.457257 TGCCAAACAATGTTCATCGATACA 59.543 37.500 0.00 0.00 0.00 2.29
178 179 4.980590 TGCCAAACAATGTTCATCGATAC 58.019 39.130 0.00 0.00 0.00 2.24
179 180 5.635417 TTGCCAAACAATGTTCATCGATA 57.365 34.783 0.00 0.00 31.73 2.92
180 181 4.517952 TTGCCAAACAATGTTCATCGAT 57.482 36.364 0.00 0.00 31.73 3.59
181 182 3.998099 TTGCCAAACAATGTTCATCGA 57.002 38.095 0.00 0.00 31.73 3.59
198 199 4.455533 TCATATGTATTTCCGAGGCATTGC 59.544 41.667 1.90 0.00 0.00 3.56
199 200 5.934043 TCTCATATGTATTTCCGAGGCATTG 59.066 40.000 1.90 0.00 0.00 2.82
200 201 6.114187 TCTCATATGTATTTCCGAGGCATT 57.886 37.500 1.90 0.00 0.00 3.56
201 202 5.745312 TCTCATATGTATTTCCGAGGCAT 57.255 39.130 1.90 0.00 0.00 4.40
202 203 5.070446 ACTTCTCATATGTATTTCCGAGGCA 59.930 40.000 1.90 0.00 0.00 4.75
203 204 5.542779 ACTTCTCATATGTATTTCCGAGGC 58.457 41.667 1.90 0.00 0.00 4.70
204 205 8.438676 AAAACTTCTCATATGTATTTCCGAGG 57.561 34.615 1.90 0.00 0.00 4.63
244 245 2.198304 AAATCCCACCACGAGCCTCC 62.198 60.000 0.00 0.00 0.00 4.30
245 246 0.322546 AAAATCCCACCACGAGCCTC 60.323 55.000 0.00 0.00 0.00 4.70
246 247 0.609131 CAAAATCCCACCACGAGCCT 60.609 55.000 0.00 0.00 0.00 4.58
247 248 1.595093 CCAAAATCCCACCACGAGCC 61.595 60.000 0.00 0.00 0.00 4.70
248 249 0.893727 ACCAAAATCCCACCACGAGC 60.894 55.000 0.00 0.00 0.00 5.03
249 250 0.881118 CACCAAAATCCCACCACGAG 59.119 55.000 0.00 0.00 0.00 4.18
250 251 0.538516 CCACCAAAATCCCACCACGA 60.539 55.000 0.00 0.00 0.00 4.35
251 252 1.963679 CCACCAAAATCCCACCACG 59.036 57.895 0.00 0.00 0.00 4.94
252 253 0.831711 AGCCACCAAAATCCCACCAC 60.832 55.000 0.00 0.00 0.00 4.16
253 254 0.105246 AAGCCACCAAAATCCCACCA 60.105 50.000 0.00 0.00 0.00 4.17
254 255 0.321346 CAAGCCACCAAAATCCCACC 59.679 55.000 0.00 0.00 0.00 4.61
255 256 0.321346 CCAAGCCACCAAAATCCCAC 59.679 55.000 0.00 0.00 0.00 4.61
256 257 0.835543 CCCAAGCCACCAAAATCCCA 60.836 55.000 0.00 0.00 0.00 4.37
257 258 0.544120 TCCCAAGCCACCAAAATCCC 60.544 55.000 0.00 0.00 0.00 3.85
258 259 1.207811 CATCCCAAGCCACCAAAATCC 59.792 52.381 0.00 0.00 0.00 3.01
259 260 2.094026 GTCATCCCAAGCCACCAAAATC 60.094 50.000 0.00 0.00 0.00 2.17
260 261 1.901833 GTCATCCCAAGCCACCAAAAT 59.098 47.619 0.00 0.00 0.00 1.82
261 262 1.133199 AGTCATCCCAAGCCACCAAAA 60.133 47.619 0.00 0.00 0.00 2.44
262 263 0.482446 AGTCATCCCAAGCCACCAAA 59.518 50.000 0.00 0.00 0.00 3.28
263 264 0.038166 GAGTCATCCCAAGCCACCAA 59.962 55.000 0.00 0.00 0.00 3.67
264 265 1.685224 GAGTCATCCCAAGCCACCA 59.315 57.895 0.00 0.00 0.00 4.17
265 266 1.077429 GGAGTCATCCCAAGCCACC 60.077 63.158 0.00 0.00 40.03 4.61
266 267 0.257039 ATGGAGTCATCCCAAGCCAC 59.743 55.000 0.00 0.00 46.04 5.01
267 268 0.548031 GATGGAGTCATCCCAAGCCA 59.452 55.000 0.00 0.00 46.04 4.75
268 269 0.548031 TGATGGAGTCATCCCAAGCC 59.452 55.000 4.22 0.00 46.92 4.35
269 270 1.673168 GTGATGGAGTCATCCCAAGC 58.327 55.000 4.22 0.00 46.92 4.01
270 271 2.338577 GGTGATGGAGTCATCCCAAG 57.661 55.000 4.22 0.00 46.92 3.61
276 277 2.505819 GGTAGTTGGGTGATGGAGTCAT 59.494 50.000 0.00 0.00 39.48 3.06
277 278 1.906574 GGTAGTTGGGTGATGGAGTCA 59.093 52.381 0.00 0.00 0.00 3.41
278 279 1.906574 TGGTAGTTGGGTGATGGAGTC 59.093 52.381 0.00 0.00 0.00 3.36
279 280 2.038863 TGGTAGTTGGGTGATGGAGT 57.961 50.000 0.00 0.00 0.00 3.85
280 281 3.081804 GTTTGGTAGTTGGGTGATGGAG 58.918 50.000 0.00 0.00 0.00 3.86
281 282 2.714250 AGTTTGGTAGTTGGGTGATGGA 59.286 45.455 0.00 0.00 0.00 3.41
282 283 3.081804 GAGTTTGGTAGTTGGGTGATGG 58.918 50.000 0.00 0.00 0.00 3.51
283 284 3.502211 GTGAGTTTGGTAGTTGGGTGATG 59.498 47.826 0.00 0.00 0.00 3.07
284 285 3.137544 TGTGAGTTTGGTAGTTGGGTGAT 59.862 43.478 0.00 0.00 0.00 3.06
285 286 2.506231 TGTGAGTTTGGTAGTTGGGTGA 59.494 45.455 0.00 0.00 0.00 4.02
286 287 2.925724 TGTGAGTTTGGTAGTTGGGTG 58.074 47.619 0.00 0.00 0.00 4.61
287 288 3.876309 ATGTGAGTTTGGTAGTTGGGT 57.124 42.857 0.00 0.00 0.00 4.51
288 289 5.048991 GTGTAATGTGAGTTTGGTAGTTGGG 60.049 44.000 0.00 0.00 0.00 4.12
289 290 5.763204 AGTGTAATGTGAGTTTGGTAGTTGG 59.237 40.000 0.00 0.00 0.00 3.77
290 291 6.861065 AGTGTAATGTGAGTTTGGTAGTTG 57.139 37.500 0.00 0.00 0.00 3.16
291 292 7.443272 GGTTAGTGTAATGTGAGTTTGGTAGTT 59.557 37.037 0.00 0.00 0.00 2.24
292 293 6.932960 GGTTAGTGTAATGTGAGTTTGGTAGT 59.067 38.462 0.00 0.00 0.00 2.73
293 294 6.932400 TGGTTAGTGTAATGTGAGTTTGGTAG 59.068 38.462 0.00 0.00 0.00 3.18
294 295 6.828788 TGGTTAGTGTAATGTGAGTTTGGTA 58.171 36.000 0.00 0.00 0.00 3.25
295 296 5.686753 TGGTTAGTGTAATGTGAGTTTGGT 58.313 37.500 0.00 0.00 0.00 3.67
296 297 6.817765 ATGGTTAGTGTAATGTGAGTTTGG 57.182 37.500 0.00 0.00 0.00 3.28
304 305 9.273016 GCAGTCATTATATGGTTAGTGTAATGT 57.727 33.333 0.00 0.00 35.39 2.71
305 306 9.271828 TGCAGTCATTATATGGTTAGTGTAATG 57.728 33.333 0.00 0.00 35.26 1.90
306 307 9.494271 CTGCAGTCATTATATGGTTAGTGTAAT 57.506 33.333 5.25 0.00 0.00 1.89
307 308 8.482943 ACTGCAGTCATTATATGGTTAGTGTAA 58.517 33.333 15.25 0.00 0.00 2.41
308 309 8.018537 ACTGCAGTCATTATATGGTTAGTGTA 57.981 34.615 15.25 0.00 0.00 2.90
309 310 6.889198 ACTGCAGTCATTATATGGTTAGTGT 58.111 36.000 15.25 0.00 0.00 3.55
310 311 7.280876 ACAACTGCAGTCATTATATGGTTAGTG 59.719 37.037 21.95 10.97 0.00 2.74
311 312 7.338710 ACAACTGCAGTCATTATATGGTTAGT 58.661 34.615 21.95 0.00 0.00 2.24
312 313 7.495606 TGACAACTGCAGTCATTATATGGTTAG 59.504 37.037 21.95 0.00 40.80 2.34
313 314 7.334858 TGACAACTGCAGTCATTATATGGTTA 58.665 34.615 21.95 1.08 40.80 2.85
314 315 6.179756 TGACAACTGCAGTCATTATATGGTT 58.820 36.000 21.95 0.00 40.80 3.67
315 316 5.744171 TGACAACTGCAGTCATTATATGGT 58.256 37.500 21.95 7.24 40.80 3.55
316 317 6.317140 ACTTGACAACTGCAGTCATTATATGG 59.683 38.462 21.95 7.78 44.66 2.74
317 318 7.184779 CACTTGACAACTGCAGTCATTATATG 58.815 38.462 21.95 15.13 44.66 1.78
318 319 6.183360 GCACTTGACAACTGCAGTCATTATAT 60.183 38.462 21.95 0.00 44.66 0.86
319 320 5.122239 GCACTTGACAACTGCAGTCATTATA 59.878 40.000 21.95 3.67 44.66 0.98
320 321 4.083110 GCACTTGACAACTGCAGTCATTAT 60.083 41.667 21.95 0.00 44.66 1.28
321 322 3.250762 GCACTTGACAACTGCAGTCATTA 59.749 43.478 21.95 5.20 44.66 1.90
322 323 2.033801 GCACTTGACAACTGCAGTCATT 59.966 45.455 21.95 7.21 44.66 2.57
323 324 1.605710 GCACTTGACAACTGCAGTCAT 59.394 47.619 21.95 11.48 44.66 3.06
324 325 1.016627 GCACTTGACAACTGCAGTCA 58.983 50.000 21.95 11.75 43.72 3.41
325 326 0.308993 GGCACTTGACAACTGCAGTC 59.691 55.000 21.95 8.86 36.55 3.51
326 327 1.103398 GGGCACTTGACAACTGCAGT 61.103 55.000 15.25 15.25 32.20 4.40
327 328 1.656441 GGGCACTTGACAACTGCAG 59.344 57.895 13.48 13.48 32.20 4.41
328 329 2.186160 CGGGCACTTGACAACTGCA 61.186 57.895 17.88 0.00 32.20 4.41
329 330 2.639286 CGGGCACTTGACAACTGC 59.361 61.111 10.37 10.37 0.00 4.40
330 331 1.227823 TCCGGGCACTTGACAACTG 60.228 57.895 0.00 0.00 0.00 3.16
331 332 1.071471 CTCCGGGCACTTGACAACT 59.929 57.895 0.00 0.00 0.00 3.16
332 333 1.966451 CCTCCGGGCACTTGACAAC 60.966 63.158 0.00 0.00 0.00 3.32
333 334 1.488705 ATCCTCCGGGCACTTGACAA 61.489 55.000 0.00 0.00 0.00 3.18
334 335 1.918293 ATCCTCCGGGCACTTGACA 60.918 57.895 0.00 0.00 0.00 3.58
335 336 1.450312 CATCCTCCGGGCACTTGAC 60.450 63.158 0.00 0.00 0.00 3.18
336 337 1.612146 TCATCCTCCGGGCACTTGA 60.612 57.895 0.00 0.00 0.00 3.02
337 338 1.153289 CTCATCCTCCGGGCACTTG 60.153 63.158 0.00 0.00 0.00 3.16
338 339 3.036429 GCTCATCCTCCGGGCACTT 62.036 63.158 0.00 0.00 0.00 3.16
339 340 3.474570 GCTCATCCTCCGGGCACT 61.475 66.667 0.00 0.00 0.00 4.40
340 341 3.746949 CTGCTCATCCTCCGGGCAC 62.747 68.421 0.00 0.00 0.00 5.01
341 342 3.473647 CTGCTCATCCTCCGGGCA 61.474 66.667 0.00 0.00 0.00 5.36
342 343 4.247380 CCTGCTCATCCTCCGGGC 62.247 72.222 0.00 0.00 0.00 6.13
343 344 4.247380 GCCTGCTCATCCTCCGGG 62.247 72.222 0.00 0.00 0.00 5.73
344 345 4.598894 CGCCTGCTCATCCTCCGG 62.599 72.222 0.00 0.00 0.00 5.14
345 346 3.842923 ACGCCTGCTCATCCTCCG 61.843 66.667 0.00 0.00 0.00 4.63
346 347 2.202987 CACGCCTGCTCATCCTCC 60.203 66.667 0.00 0.00 0.00 4.30
347 348 2.202987 CCACGCCTGCTCATCCTC 60.203 66.667 0.00 0.00 0.00 3.71
348 349 3.005539 ACCACGCCTGCTCATCCT 61.006 61.111 0.00 0.00 0.00 3.24
349 350 2.821366 CACCACGCCTGCTCATCC 60.821 66.667 0.00 0.00 0.00 3.51
350 351 2.821366 CCACCACGCCTGCTCATC 60.821 66.667 0.00 0.00 0.00 2.92
354 355 4.586235 AAAGCCACCACGCCTGCT 62.586 61.111 0.00 0.00 35.08 4.24
355 356 4.043200 GAAAGCCACCACGCCTGC 62.043 66.667 0.00 0.00 0.00 4.85
356 357 1.973281 ATGAAAGCCACCACGCCTG 60.973 57.895 0.00 0.00 0.00 4.85
357 358 1.973281 CATGAAAGCCACCACGCCT 60.973 57.895 0.00 0.00 0.00 5.52
358 359 2.268076 ACATGAAAGCCACCACGCC 61.268 57.895 0.00 0.00 0.00 5.68
359 360 1.081242 CACATGAAAGCCACCACGC 60.081 57.895 0.00 0.00 0.00 5.34
360 361 0.238289 GACACATGAAAGCCACCACG 59.762 55.000 0.00 0.00 0.00 4.94
361 362 1.609208 AGACACATGAAAGCCACCAC 58.391 50.000 0.00 0.00 0.00 4.16
362 363 3.346315 CATAGACACATGAAAGCCACCA 58.654 45.455 0.00 0.00 0.00 4.17
363 364 2.684881 CCATAGACACATGAAAGCCACC 59.315 50.000 0.00 0.00 0.00 4.61
364 365 2.098117 GCCATAGACACATGAAAGCCAC 59.902 50.000 0.00 0.00 0.00 5.01
365 366 2.368439 GCCATAGACACATGAAAGCCA 58.632 47.619 0.00 0.00 0.00 4.75
366 367 1.678101 GGCCATAGACACATGAAAGCC 59.322 52.381 0.00 0.00 0.00 4.35
367 368 1.678101 GGGCCATAGACACATGAAAGC 59.322 52.381 4.39 0.00 0.00 3.51
368 369 2.684881 GTGGGCCATAGACACATGAAAG 59.315 50.000 10.70 0.00 35.30 2.62
369 370 2.040947 TGTGGGCCATAGACACATGAAA 59.959 45.455 10.70 0.00 39.92 2.69
370 371 1.632920 TGTGGGCCATAGACACATGAA 59.367 47.619 10.70 0.00 39.92 2.57
371 372 1.284313 TGTGGGCCATAGACACATGA 58.716 50.000 10.70 0.00 39.92 3.07
372 373 2.019249 CTTGTGGGCCATAGACACATG 58.981 52.381 10.70 10.56 43.75 3.21
373 374 1.915489 TCTTGTGGGCCATAGACACAT 59.085 47.619 10.70 0.00 43.75 3.21
374 375 1.357137 TCTTGTGGGCCATAGACACA 58.643 50.000 10.70 6.35 42.77 3.72
375 376 2.092968 TCATCTTGTGGGCCATAGACAC 60.093 50.000 19.64 3.18 35.75 3.67
376 377 2.195727 TCATCTTGTGGGCCATAGACA 58.804 47.619 19.64 6.94 0.00 3.41
377 378 3.144506 CATCATCTTGTGGGCCATAGAC 58.855 50.000 19.64 4.34 0.00 2.59
378 379 2.487805 GCATCATCTTGTGGGCCATAGA 60.488 50.000 19.56 19.56 0.00 1.98
379 380 1.884579 GCATCATCTTGTGGGCCATAG 59.115 52.381 10.70 11.06 0.00 2.23
380 381 1.479205 GGCATCATCTTGTGGGCCATA 60.479 52.381 10.70 3.21 43.68 2.74
381 382 0.757935 GGCATCATCTTGTGGGCCAT 60.758 55.000 10.70 0.00 43.68 4.40
382 383 1.380246 GGCATCATCTTGTGGGCCA 60.380 57.895 0.00 0.00 43.68 5.36
383 384 1.380246 TGGCATCATCTTGTGGGCC 60.380 57.895 0.00 0.00 44.15 5.80
384 385 1.669999 GGTGGCATCATCTTGTGGGC 61.670 60.000 0.00 0.00 0.00 5.36
385 386 1.039233 GGGTGGCATCATCTTGTGGG 61.039 60.000 0.00 0.00 0.00 4.61
386 387 0.033796 AGGGTGGCATCATCTTGTGG 60.034 55.000 0.00 0.00 0.00 4.17
387 388 1.100510 CAGGGTGGCATCATCTTGTG 58.899 55.000 0.00 0.00 0.00 3.33
388 389 0.682209 GCAGGGTGGCATCATCTTGT 60.682 55.000 0.00 0.00 34.09 3.16
389 390 1.389609 GGCAGGGTGGCATCATCTTG 61.390 60.000 0.00 0.00 43.14 3.02
390 391 1.076485 GGCAGGGTGGCATCATCTT 60.076 57.895 0.00 0.00 43.14 2.40
391 392 2.599597 GGCAGGGTGGCATCATCT 59.400 61.111 0.00 0.00 43.14 2.90
392 393 2.903855 CGGCAGGGTGGCATCATC 60.904 66.667 0.00 0.00 43.94 2.92
393 394 4.511246 CCGGCAGGGTGGCATCAT 62.511 66.667 0.00 0.00 43.94 2.45
418 419 4.501071 CAGGATGGAAAGGAAAATTGCTG 58.499 43.478 0.00 0.00 0.00 4.41
458 459 1.000394 TCTGCAAACCTTCATCGACGA 60.000 47.619 0.00 0.00 0.00 4.20
459 460 1.428448 TCTGCAAACCTTCATCGACG 58.572 50.000 0.00 0.00 0.00 5.12
481 482 4.500603 TTATCGCCGTCTAAGAAGGATC 57.499 45.455 0.00 0.00 33.09 3.36
486 487 3.381045 CTGCATTATCGCCGTCTAAGAA 58.619 45.455 0.00 0.00 0.00 2.52
510 511 0.034863 GGGACGTTATTTGGGGCTCA 60.035 55.000 0.00 0.00 0.00 4.26
557 558 2.771089 TCTTCTGGATGTGTTGTCTGC 58.229 47.619 0.00 0.00 0.00 4.26
572 573 0.035152 TGTGCCGGCATTGATCTTCT 60.035 50.000 35.23 0.00 0.00 2.85
574 575 1.027357 GATGTGCCGGCATTGATCTT 58.973 50.000 35.23 17.22 0.00 2.40
618 621 1.873591 GCGGACTGATCACAAACTTGT 59.126 47.619 0.00 0.00 43.36 3.16
665 668 4.154918 GGATGAGCTTTGTTCGATTTCTGT 59.845 41.667 0.00 0.00 0.00 3.41
675 678 3.152341 CCAGACAAGGATGAGCTTTGTT 58.848 45.455 0.00 0.00 45.56 2.83
741 744 0.250684 TCATGCAAGGACGGCAAGAA 60.251 50.000 0.00 0.00 45.60 2.52
745 748 0.608856 ACATTCATGCAAGGACGGCA 60.609 50.000 0.00 0.00 46.66 5.69
764 767 1.679977 GGCAAGGCATCCTCAAGCA 60.680 57.895 0.00 0.00 30.89 3.91
868 893 2.995283 ACTACTTAATGGAAACCCCGC 58.005 47.619 0.00 0.00 37.93 6.13
885 910 5.642919 GTCCTCTTCTTCGTCAAGAGTACTA 59.357 44.000 15.09 0.00 43.76 1.82
943 968 2.676822 ACGAGCAGAGGAAGCCGA 60.677 61.111 0.00 0.00 32.57 5.54
1391 1433 4.742201 GCGCGCTGAGGACCTCAA 62.742 66.667 26.67 9.23 40.18 3.02
1429 1471 2.298661 GGAAGAAGGGGAGGGCGAA 61.299 63.158 0.00 0.00 0.00 4.70
1826 1868 4.809496 CTTCCTGGCCCAGCGCAT 62.809 66.667 11.47 0.00 40.31 4.73
2317 2359 0.982704 ACAGTCTCAGAGCTTGGCAT 59.017 50.000 0.00 0.00 0.00 4.40
2427 2469 7.001674 TCAAGAAGTGCCCTAAAAATTCTACA 58.998 34.615 0.00 0.00 0.00 2.74
2441 2483 1.538950 CAAAGAGCCTCAAGAAGTGCC 59.461 52.381 0.00 0.00 0.00 5.01
2443 2485 2.224606 TGCAAAGAGCCTCAAGAAGTG 58.775 47.619 0.00 0.00 44.83 3.16
2667 2709 8.087750 TCAATATTTCCTTCATCCACAAAACAC 58.912 33.333 0.00 0.00 0.00 3.32
2763 2805 0.107703 TGCATAGCCCTTTCACGAGG 60.108 55.000 0.00 0.00 36.52 4.63
3299 3341 5.924475 AAATGCGTCCTATATCTTTTCCG 57.076 39.130 0.00 0.00 0.00 4.30
3318 3360 1.415374 CGAACGATCGCCGGATAAAT 58.585 50.000 16.60 0.00 42.96 1.40
3348 3390 0.179100 TTGAGGTGCTCGCTGATAGC 60.179 55.000 0.00 0.00 40.50 2.97
3389 3431 2.487762 CCTCACACATACACGGCAATTT 59.512 45.455 0.00 0.00 0.00 1.82
3505 3547 9.724839 TTAGTTGCTTGATTTGTAGTTGTTTAC 57.275 29.630 0.00 0.00 0.00 2.01
3532 3574 6.017400 ACGAAATAACTCTCCTTGTTCGTA 57.983 37.500 6.74 0.00 0.00 3.43
3542 3584 6.780706 TCTTTGTTGGACGAAATAACTCTC 57.219 37.500 0.00 0.00 0.00 3.20
3614 3656 2.202756 GGTAGGTTCGAGCGGCTG 60.203 66.667 7.50 0.00 0.00 4.85
3622 3664 0.682852 TGTGGTGGAAGGTAGGTTCG 59.317 55.000 0.00 0.00 0.00 3.95
3706 3748 2.162681 CAACGGAGCAATCCCTCTTTT 58.837 47.619 0.00 0.00 32.43 2.27
3856 3900 1.604593 CCAGGGCAACAAGGTCTGG 60.605 63.158 0.00 0.00 38.96 3.86
3858 3902 2.845345 CCCCAGGGCAACAAGGTCT 61.845 63.158 0.00 0.00 39.74 3.85
3894 3938 0.325933 CCTGAGCTCCACCAATGTGA 59.674 55.000 12.15 0.00 45.76 3.58
3955 3999 4.351054 AACCCGCTCCTTGCCAGG 62.351 66.667 0.00 0.00 42.50 4.45
4084 4128 4.346418 AGATCTAGTCGAAGAAATGCCCAT 59.654 41.667 0.00 0.00 39.69 4.00
4099 4143 4.033709 ACCACCATAGCAACAGATCTAGT 58.966 43.478 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.