Multiple sequence alignment - TraesCS2D01G148800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G148800 chr2D 100.000 3137 0 0 1 3137 90310839 90307703 0.000000e+00 5794.0
1 TraesCS2D01G148800 chr2D 73.752 781 165 32 1356 2122 96680070 96680824 1.430000e-68 270.0
2 TraesCS2D01G148800 chr2D 96.689 151 5 0 2987 3137 90280081 90279931 5.190000e-63 252.0
3 TraesCS2D01G148800 chr2D 92.617 149 8 3 2988 3135 636087388 636087242 8.810000e-51 211.0
4 TraesCS2D01G148800 chr2D 93.443 61 4 0 1206 1266 96774908 96774968 1.200000e-14 91.6
5 TraesCS2D01G148800 chr2D 94.545 55 2 1 1208 1262 96679884 96679937 2.000000e-12 84.2
6 TraesCS2D01G148800 chr2D 94.545 55 2 1 1208 1262 96749671 96749724 2.000000e-12 84.2
7 TraesCS2D01G148800 chr2D 78.400 125 19 7 2557 2677 383079416 383079536 1.210000e-09 75.0
8 TraesCS2D01G148800 chr2D 96.970 33 0 1 2603 2635 333120485 333120454 2.000000e-03 54.7
9 TraesCS2D01G148800 chr2A 90.921 2368 164 22 1 2359 90046947 90044622 0.000000e+00 3134.0
10 TraesCS2D01G148800 chr2A 83.539 1051 132 20 1312 2345 90030032 90029006 0.000000e+00 944.0
11 TraesCS2D01G148800 chr2A 74.425 782 156 37 1356 2121 95273083 95273836 2.370000e-76 296.0
12 TraesCS2D01G148800 chr2A 87.251 251 26 4 2724 2969 90042233 90041984 6.620000e-72 281.0
13 TraesCS2D01G148800 chr2A 74.008 781 163 31 1356 2122 95158374 95159128 6.620000e-72 281.0
14 TraesCS2D01G148800 chr2A 81.132 371 36 19 754 1094 90030741 90030375 1.850000e-67 267.0
15 TraesCS2D01G148800 chr2A 87.727 220 27 0 1101 1320 90030335 90030116 1.120000e-64 257.0
16 TraesCS2D01G148800 chr2A 93.548 93 5 1 2356 2448 90028738 90028647 1.520000e-28 137.0
17 TraesCS2D01G148800 chr2B 94.934 1283 57 5 1090 2366 142945602 142944322 0.000000e+00 2002.0
18 TraesCS2D01G148800 chr2B 92.735 234 17 0 861 1094 142945861 142945628 3.880000e-89 339.0
19 TraesCS2D01G148800 chr2B 84.802 329 30 11 436 762 142946173 142945863 2.350000e-81 313.0
20 TraesCS2D01G148800 chr2B 74.013 785 156 37 1356 2122 148037152 148037906 3.080000e-70 276.0
21 TraesCS2D01G148800 chr2B 73.800 771 162 31 1356 2112 147830407 147831151 5.160000e-68 268.0
22 TraesCS2D01G148800 chr2B 73.800 771 162 31 1356 2112 147870160 147870904 5.160000e-68 268.0
23 TraesCS2D01G148800 chr2B 90.968 155 13 1 2984 3137 767494567 767494721 1.140000e-49 207.0
24 TraesCS2D01G148800 chr2B 90.441 136 12 1 3001 3135 767489480 767489615 8.940000e-41 178.0
25 TraesCS2D01G148800 chr2B 84.615 65 5 4 328 388 412741478 412741541 3.380000e-05 60.2
26 TraesCS2D01G148800 chrUn 76.759 611 103 27 1217 1816 17364995 17365577 3.930000e-79 305.0
27 TraesCS2D01G148800 chr6D 78.426 394 63 18 1581 1969 410054899 410054523 1.450000e-58 237.0
28 TraesCS2D01G148800 chr6D 86.321 212 23 5 1582 1791 409882866 409883073 3.150000e-55 226.0
29 TraesCS2D01G148800 chr6D 87.742 155 16 3 2984 3137 411581093 411580941 8.940000e-41 178.0
30 TraesCS2D01G148800 chr6D 86.452 155 18 3 2984 3137 411556822 411556670 1.940000e-37 167.0
31 TraesCS2D01G148800 chr6D 77.340 203 35 7 1354 1555 409872560 409872752 3.310000e-20 110.0
32 TraesCS2D01G148800 chr6D 92.308 52 3 1 1211 1262 409882474 409882524 4.340000e-09 73.1
33 TraesCS2D01G148800 chr7A 80.000 295 37 13 103 388 178299661 178299380 6.860000e-47 198.0
34 TraesCS2D01G148800 chr7A 76.786 112 20 3 1438 1549 54818186 54818291 1.220000e-04 58.4
35 TraesCS2D01G148800 chr5D 91.429 140 9 3 2997 3135 515570992 515570855 4.130000e-44 189.0
36 TraesCS2D01G148800 chr5D 90.000 140 10 4 2997 3135 551246375 551246239 8.940000e-41 178.0
37 TraesCS2D01G148800 chr1D 88.387 155 13 5 2985 3137 461565541 461565692 6.910000e-42 182.0
38 TraesCS2D01G148800 chr3D 80.226 177 21 10 214 388 89258569 89258405 1.530000e-23 121.0
39 TraesCS2D01G148800 chr1A 73.824 340 71 14 1438 1771 497585179 497584852 5.500000e-23 119.0
40 TraesCS2D01G148800 chr3B 79.558 181 17 13 213 388 138526602 138526437 9.200000e-21 111.0
41 TraesCS2D01G148800 chr4B 78.107 169 31 5 2511 2677 138132286 138132450 5.540000e-18 102.0
42 TraesCS2D01G148800 chr3A 77.528 178 25 13 214 388 106025645 106025480 3.330000e-15 93.5
43 TraesCS2D01G148800 chr7D 88.889 45 5 0 1438 1482 52000059 52000103 4.370000e-04 56.5
44 TraesCS2D01G148800 chr5B 80.769 78 10 3 2608 2681 244965456 244965532 4.370000e-04 56.5
45 TraesCS2D01G148800 chr5A 100.000 28 0 0 361 388 704593530 704593503 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G148800 chr2D 90307703 90310839 3136 True 5794.000000 5794 100.000000 1 3137 1 chr2D.!!$R2 3136
1 TraesCS2D01G148800 chr2A 90041984 90046947 4963 True 1707.500000 3134 89.086000 1 2969 2 chr2A.!!$R2 2968
2 TraesCS2D01G148800 chr2A 90028647 90030741 2094 True 401.250000 944 86.486500 754 2448 4 chr2A.!!$R1 1694
3 TraesCS2D01G148800 chr2A 95273083 95273836 753 False 296.000000 296 74.425000 1356 2121 1 chr2A.!!$F2 765
4 TraesCS2D01G148800 chr2A 95158374 95159128 754 False 281.000000 281 74.008000 1356 2122 1 chr2A.!!$F1 766
5 TraesCS2D01G148800 chr2B 142944322 142946173 1851 True 884.666667 2002 90.823667 436 2366 3 chr2B.!!$R1 1930
6 TraesCS2D01G148800 chr2B 148037152 148037906 754 False 276.000000 276 74.013000 1356 2122 1 chr2B.!!$F3 766
7 TraesCS2D01G148800 chr2B 147830407 147831151 744 False 268.000000 268 73.800000 1356 2112 1 chr2B.!!$F1 756
8 TraesCS2D01G148800 chr2B 147870160 147870904 744 False 268.000000 268 73.800000 1356 2112 1 chr2B.!!$F2 756
9 TraesCS2D01G148800 chrUn 17364995 17365577 582 False 305.000000 305 76.759000 1217 1816 1 chrUn.!!$F1 599

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
351 364 0.251787 GGTGGGAGGTGAGGCAAAAT 60.252 55.0 0.00 0.0 0.0 1.82 F
384 397 0.896226 AACCGGTGAGGAGAAGCTAC 59.104 55.0 8.52 0.0 45.0 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2091 2271 1.067283 CGGCACTTGTGTCTGATCTCT 60.067 52.381 3.84 0.0 0.00 3.10 R
2371 4931 1.153745 GCAGAAGCGGATGTCGAGT 60.154 57.895 0.00 0.0 42.43 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 7.866729 TGTTGTATTACGATTGTTGTGATTGT 58.133 30.769 0.00 0.00 0.00 2.71
70 71 9.554724 GTATTACGATTGTTGTGATTGTCATTT 57.445 29.630 0.00 0.00 0.00 2.32
113 114 9.612620 GTAACAATATATGGAAGCACATTAAGC 57.387 33.333 0.00 0.00 32.39 3.09
120 121 5.772825 TGGAAGCACATTAAGCAATATCC 57.227 39.130 0.00 0.00 0.00 2.59
182 189 6.037786 TGTCTTTTACGAAGGTGATCTCAT 57.962 37.500 0.00 0.00 0.00 2.90
193 200 6.699204 CGAAGGTGATCTCATATATATGGTGC 59.301 42.308 20.18 9.77 34.50 5.01
199 206 9.750125 GTGATCTCATATATATGGTGCGAATTA 57.250 33.333 20.18 0.00 34.50 1.40
234 243 8.483307 AATTGTGATTGAATTAAATCAGCACC 57.517 30.769 17.19 7.50 44.96 5.01
235 244 6.839124 TGTGATTGAATTAAATCAGCACCT 57.161 33.333 17.19 0.00 44.96 4.00
237 246 6.433716 TGTGATTGAATTAAATCAGCACCTGA 59.566 34.615 17.19 0.00 44.96 3.86
257 266 4.299155 TGACAAAACAAGCACGAAACAAA 58.701 34.783 0.00 0.00 0.00 2.83
258 267 4.384247 TGACAAAACAAGCACGAAACAAAG 59.616 37.500 0.00 0.00 0.00 2.77
262 271 4.434713 AACAAGCACGAAACAAAGTCTT 57.565 36.364 0.00 0.00 0.00 3.01
274 283 6.089417 CGAAACAAAGTCTTCCCATTTAATGC 59.911 38.462 0.00 0.00 0.00 3.56
281 290 5.652014 AGTCTTCCCATTTAATGCGATTTGA 59.348 36.000 0.00 0.00 0.00 2.69
287 296 9.658799 TTCCCATTTAATGCGATTTGATTTTTA 57.341 25.926 0.00 0.00 0.00 1.52
318 328 6.153510 AGGAGAAAATAAACCAATGAGAAGGC 59.846 38.462 0.00 0.00 0.00 4.35
319 329 6.071391 GGAGAAAATAAACCAATGAGAAGGCA 60.071 38.462 0.00 0.00 0.00 4.75
320 330 7.301868 AGAAAATAAACCAATGAGAAGGCAA 57.698 32.000 0.00 0.00 0.00 4.52
321 331 7.910584 AGAAAATAAACCAATGAGAAGGCAAT 58.089 30.769 0.00 0.00 0.00 3.56
322 332 7.820872 AGAAAATAAACCAATGAGAAGGCAATG 59.179 33.333 0.00 0.00 0.00 2.82
323 333 6.855763 AATAAACCAATGAGAAGGCAATGA 57.144 33.333 0.00 0.00 0.00 2.57
324 334 4.796038 AAACCAATGAGAAGGCAATGAG 57.204 40.909 0.00 0.00 0.00 2.90
325 335 3.726557 ACCAATGAGAAGGCAATGAGA 57.273 42.857 0.00 0.00 0.00 3.27
326 336 3.618351 ACCAATGAGAAGGCAATGAGAG 58.382 45.455 0.00 0.00 0.00 3.20
327 337 2.950309 CCAATGAGAAGGCAATGAGAGG 59.050 50.000 0.00 0.00 0.00 3.69
328 338 2.950309 CAATGAGAAGGCAATGAGAGGG 59.050 50.000 0.00 0.00 0.00 4.30
333 343 0.554792 AAGGCAATGAGAGGGGATGG 59.445 55.000 0.00 0.00 0.00 3.51
347 357 2.204136 ATGGTGGGAGGTGAGGCA 60.204 61.111 0.00 0.00 0.00 4.75
351 364 0.251787 GGTGGGAGGTGAGGCAAAAT 60.252 55.000 0.00 0.00 0.00 1.82
353 366 2.556559 GGTGGGAGGTGAGGCAAAATAA 60.557 50.000 0.00 0.00 0.00 1.40
355 368 3.769300 GTGGGAGGTGAGGCAAAATAAAT 59.231 43.478 0.00 0.00 0.00 1.40
357 370 5.420739 GTGGGAGGTGAGGCAAAATAAATAA 59.579 40.000 0.00 0.00 0.00 1.40
359 372 6.671779 TGGGAGGTGAGGCAAAATAAATAAAT 59.328 34.615 0.00 0.00 0.00 1.40
384 397 0.896226 AACCGGTGAGGAGAAGCTAC 59.104 55.000 8.52 0.00 45.00 3.58
385 398 0.971447 ACCGGTGAGGAGAAGCTACC 60.971 60.000 6.12 0.00 45.00 3.18
434 447 7.070074 AGTCCTGTAATAATCCTACTTGTGAGG 59.930 40.741 0.00 0.00 35.17 3.86
455 468 4.078278 AGGAGAAGCCCTTTAGGAGTAGAT 60.078 45.833 0.00 0.00 38.24 1.98
537 550 2.552743 GGAACCCAAAGAACAGTACTGC 59.447 50.000 22.90 7.58 0.00 4.40
538 551 2.271944 ACCCAAAGAACAGTACTGCC 57.728 50.000 22.90 14.47 0.00 4.85
539 552 1.493022 ACCCAAAGAACAGTACTGCCA 59.507 47.619 22.90 0.00 0.00 4.92
540 553 2.092103 ACCCAAAGAACAGTACTGCCAA 60.092 45.455 22.90 0.00 0.00 4.52
586 599 2.202987 CTGCTCCCATGCTCCGAC 60.203 66.667 0.00 0.00 0.00 4.79
591 604 2.021068 CTCCCATGCTCCGACGTGAT 62.021 60.000 0.00 0.00 0.00 3.06
595 608 1.141881 ATGCTCCGACGTGATGTCC 59.858 57.895 0.00 0.00 45.23 4.02
609 622 3.532155 GTCCGCCGCTGGATCTCT 61.532 66.667 7.13 0.00 40.91 3.10
622 635 2.149578 GGATCTCTGATTCAATGGGCG 58.850 52.381 0.00 0.00 0.00 6.13
637 650 1.134753 TGGGCGACATTTGATCAATGC 59.865 47.619 9.40 8.50 45.74 3.56
659 672 4.792704 GCGAGTTTTGCAGAAAATCCTTCA 60.793 41.667 12.72 0.00 33.63 3.02
666 679 5.787953 TGCAGAAAATCCTTCAAACATCA 57.212 34.783 0.00 0.00 0.00 3.07
668 681 5.302568 TGCAGAAAATCCTTCAAACATCACT 59.697 36.000 0.00 0.00 0.00 3.41
684 705 5.503927 ACATCACTGAGATAATGCTTTGGT 58.496 37.500 0.00 0.00 34.43 3.67
687 708 4.019411 TCACTGAGATAATGCTTTGGTCCA 60.019 41.667 0.00 0.00 0.00 4.02
688 709 4.095483 CACTGAGATAATGCTTTGGTCCAC 59.905 45.833 0.00 0.00 0.00 4.02
689 710 4.263462 ACTGAGATAATGCTTTGGTCCACA 60.263 41.667 0.00 0.00 0.00 4.17
690 711 4.858850 TGAGATAATGCTTTGGTCCACAT 58.141 39.130 0.00 0.00 0.00 3.21
691 712 5.263599 TGAGATAATGCTTTGGTCCACATT 58.736 37.500 10.21 10.21 36.70 2.71
692 713 5.357878 TGAGATAATGCTTTGGTCCACATTC 59.642 40.000 8.97 0.00 34.69 2.67
693 714 4.646492 AGATAATGCTTTGGTCCACATTCC 59.354 41.667 8.97 4.51 34.69 3.01
694 715 1.560505 ATGCTTTGGTCCACATTCCC 58.439 50.000 0.00 0.00 0.00 3.97
700 721 4.519213 CTTTGGTCCACATTCCCGTAATA 58.481 43.478 0.00 0.00 0.00 0.98
703 724 4.288398 TGGTCCACATTCCCGTAATACTA 58.712 43.478 0.00 0.00 0.00 1.82
738 760 3.321968 TGATATACAGCTGAGGTCGCATT 59.678 43.478 23.35 0.00 0.00 3.56
814 836 2.030805 GCATGTTCCTGGTTGACTTGAC 60.031 50.000 13.33 5.64 0.00 3.18
826 848 1.134128 TGACTTGACCACACACATGCT 60.134 47.619 0.00 0.00 0.00 3.79
1006 1055 1.414181 GAGAGCTAGCAACCATGGCTA 59.586 52.381 18.83 6.83 42.62 3.93
1129 1211 2.181021 CGCTCACCTACGGTCACC 59.819 66.667 0.00 0.00 31.02 4.02
1173 1255 1.043816 ATGGAGCGGAGATGATCGTT 58.956 50.000 0.00 0.00 0.00 3.85
1296 1380 4.729595 CAGAGTTACATACGCTGTACACA 58.270 43.478 0.00 0.00 46.05 3.72
1827 2007 3.431626 CCATGGCCATGAACTCTACGTTA 60.432 47.826 41.32 0.00 41.20 3.18
1932 2112 7.380536 ACAACCAATACTACAAGAACGTGATA 58.619 34.615 0.00 0.00 0.00 2.15
2011 2191 3.896122 TCCGTGAAACAAAATGCTAAGC 58.104 40.909 0.00 0.00 35.74 3.09
2017 2197 6.128553 CGTGAAACAAAATGCTAAGCTCTCTA 60.129 38.462 0.00 0.00 35.74 2.43
2026 2206 5.311844 TGCTAAGCTCTCTATAGACTGGA 57.688 43.478 0.00 0.00 0.00 3.86
2091 2271 2.783135 GTGAAGACCAGCAAGAATGGA 58.217 47.619 0.00 0.00 40.51 3.41
2135 2315 4.932200 GTCCATCAACAAGAACTACTCCTG 59.068 45.833 0.00 0.00 0.00 3.86
2276 2472 8.836268 TTTACTGAAATTGTTATCGGTGTACT 57.164 30.769 0.00 0.00 35.95 2.73
2335 2531 1.960689 TGGCTTTGTTTTAGAGGCACC 59.039 47.619 0.00 0.00 40.48 5.01
2336 2532 2.239400 GGCTTTGTTTTAGAGGCACCT 58.761 47.619 0.00 0.00 36.15 4.00
2354 2550 2.224450 ACCTGTCACTTTTCCCGGTAAG 60.224 50.000 0.00 3.60 0.00 2.34
2404 4964 3.274288 CTTCTGCCTCCTATGTTTGACC 58.726 50.000 0.00 0.00 0.00 4.02
2413 4973 2.093447 CCTATGTTTGACCTCGGCTCTT 60.093 50.000 0.00 0.00 0.00 2.85
2416 4976 0.673956 GTTTGACCTCGGCTCTTCCC 60.674 60.000 0.00 0.00 0.00 3.97
2449 5009 8.581057 ACTTAGAAAGAGCATGTATTATGACG 57.419 34.615 0.00 0.00 0.00 4.35
2450 5010 7.653713 ACTTAGAAAGAGCATGTATTATGACGG 59.346 37.037 0.00 0.00 0.00 4.79
2451 5011 5.918608 AGAAAGAGCATGTATTATGACGGT 58.081 37.500 0.00 0.00 0.00 4.83
2452 5012 6.349300 AGAAAGAGCATGTATTATGACGGTT 58.651 36.000 0.00 0.00 0.00 4.44
2453 5013 5.991328 AAGAGCATGTATTATGACGGTTG 57.009 39.130 0.00 0.00 0.00 3.77
2454 5014 5.023533 AGAGCATGTATTATGACGGTTGT 57.976 39.130 0.00 0.00 0.00 3.32
2455 5015 6.156748 AGAGCATGTATTATGACGGTTGTA 57.843 37.500 0.00 0.00 0.00 2.41
2456 5016 6.578944 AGAGCATGTATTATGACGGTTGTAA 58.421 36.000 0.00 0.00 0.00 2.41
2457 5017 7.217200 AGAGCATGTATTATGACGGTTGTAAT 58.783 34.615 0.00 4.93 0.00 1.89
2458 5018 8.364894 AGAGCATGTATTATGACGGTTGTAATA 58.635 33.333 0.00 3.50 0.00 0.98
2459 5019 9.151471 GAGCATGTATTATGACGGTTGTAATAT 57.849 33.333 0.00 0.00 0.00 1.28
2460 5020 9.502091 AGCATGTATTATGACGGTTGTAATATT 57.498 29.630 0.00 0.00 0.00 1.28
2461 5021 9.755064 GCATGTATTATGACGGTTGTAATATTC 57.245 33.333 0.00 0.00 0.00 1.75
2468 5028 9.701098 TTATGACGGTTGTAATATTCCTACATC 57.299 33.333 0.00 0.00 0.00 3.06
2469 5029 6.518493 TGACGGTTGTAATATTCCTACATCC 58.482 40.000 0.00 0.00 36.44 3.51
2470 5030 6.098552 TGACGGTTGTAATATTCCTACATCCA 59.901 38.462 13.61 0.00 38.34 3.41
2471 5031 6.891388 ACGGTTGTAATATTCCTACATCCAA 58.109 36.000 13.61 0.00 38.34 3.53
2472 5032 6.764560 ACGGTTGTAATATTCCTACATCCAAC 59.235 38.462 13.61 0.00 38.34 3.77
2473 5033 6.204108 CGGTTGTAATATTCCTACATCCAACC 59.796 42.308 13.61 0.00 43.56 3.77
2474 5034 7.287810 GGTTGTAATATTCCTACATCCAACCT 58.712 38.462 9.76 0.00 43.62 3.50
2475 5035 7.228706 GGTTGTAATATTCCTACATCCAACCTG 59.771 40.741 9.76 0.00 43.62 4.00
2476 5036 6.296026 TGTAATATTCCTACATCCAACCTGC 58.704 40.000 0.00 0.00 0.00 4.85
2477 5037 2.736670 ATTCCTACATCCAACCTGCC 57.263 50.000 0.00 0.00 0.00 4.85
2478 5038 1.367346 TTCCTACATCCAACCTGCCA 58.633 50.000 0.00 0.00 0.00 4.92
2479 5039 1.367346 TCCTACATCCAACCTGCCAA 58.633 50.000 0.00 0.00 0.00 4.52
2480 5040 1.281867 TCCTACATCCAACCTGCCAAG 59.718 52.381 0.00 0.00 0.00 3.61
2481 5041 1.098050 CTACATCCAACCTGCCAAGC 58.902 55.000 0.00 0.00 0.00 4.01
2482 5042 0.676466 TACATCCAACCTGCCAAGCG 60.676 55.000 0.00 0.00 0.00 4.68
2483 5043 1.675310 CATCCAACCTGCCAAGCGA 60.675 57.895 0.00 0.00 0.00 4.93
2484 5044 1.033746 CATCCAACCTGCCAAGCGAT 61.034 55.000 0.00 0.00 0.00 4.58
2485 5045 0.323725 ATCCAACCTGCCAAGCGATT 60.324 50.000 0.00 0.00 0.00 3.34
2486 5046 0.539438 TCCAACCTGCCAAGCGATTT 60.539 50.000 0.00 0.00 0.00 2.17
2487 5047 0.318120 CCAACCTGCCAAGCGATTTT 59.682 50.000 0.00 0.00 0.00 1.82
2488 5048 1.421382 CAACCTGCCAAGCGATTTTG 58.579 50.000 0.00 0.00 0.00 2.44
2489 5049 1.039856 AACCTGCCAAGCGATTTTGT 58.960 45.000 0.00 0.00 0.00 2.83
2490 5050 0.314935 ACCTGCCAAGCGATTTTGTG 59.685 50.000 0.00 0.00 0.00 3.33
2491 5051 1.010419 CCTGCCAAGCGATTTTGTGC 61.010 55.000 0.00 0.00 0.00 4.57
2492 5052 0.318869 CTGCCAAGCGATTTTGTGCA 60.319 50.000 0.00 0.00 34.95 4.57
2493 5053 0.317799 TGCCAAGCGATTTTGTGCAT 59.682 45.000 0.00 0.00 32.85 3.96
2494 5054 0.717224 GCCAAGCGATTTTGTGCATG 59.283 50.000 0.00 0.00 0.00 4.06
2495 5055 1.936203 GCCAAGCGATTTTGTGCATGT 60.936 47.619 0.00 0.00 0.00 3.21
2496 5056 2.406130 CCAAGCGATTTTGTGCATGTT 58.594 42.857 0.00 0.00 0.00 2.71
2497 5057 2.156117 CCAAGCGATTTTGTGCATGTTG 59.844 45.455 0.00 0.00 0.00 3.33
2498 5058 2.796031 CAAGCGATTTTGTGCATGTTGT 59.204 40.909 0.00 0.00 0.00 3.32
2499 5059 2.396601 AGCGATTTTGTGCATGTTGTG 58.603 42.857 0.00 0.00 0.00 3.33
2500 5060 2.034432 AGCGATTTTGTGCATGTTGTGA 59.966 40.909 0.00 0.00 0.00 3.58
2501 5061 2.153627 GCGATTTTGTGCATGTTGTGAC 59.846 45.455 0.00 0.00 0.00 3.67
2502 5062 3.370276 CGATTTTGTGCATGTTGTGACA 58.630 40.909 0.00 0.00 40.71 3.58
2503 5063 3.422876 CGATTTTGTGCATGTTGTGACAG 59.577 43.478 0.00 0.00 39.58 3.51
2504 5064 3.865011 TTTTGTGCATGTTGTGACAGT 57.135 38.095 0.00 0.00 39.58 3.55
2505 5065 3.419264 TTTGTGCATGTTGTGACAGTC 57.581 42.857 0.00 0.00 39.58 3.51
2506 5066 2.035530 TGTGCATGTTGTGACAGTCA 57.964 45.000 0.00 0.00 39.58 3.41
2507 5067 1.941975 TGTGCATGTTGTGACAGTCAG 59.058 47.619 2.53 0.00 39.58 3.51
2508 5068 2.212652 GTGCATGTTGTGACAGTCAGA 58.787 47.619 2.53 0.00 39.58 3.27
2509 5069 2.032549 GTGCATGTTGTGACAGTCAGAC 60.033 50.000 2.53 6.77 39.58 3.51
2510 5070 2.158914 TGCATGTTGTGACAGTCAGACT 60.159 45.455 2.53 0.00 39.58 3.24
2511 5071 2.874701 GCATGTTGTGACAGTCAGACTT 59.125 45.455 2.53 1.85 39.58 3.01
2512 5072 3.059325 GCATGTTGTGACAGTCAGACTTC 60.059 47.826 2.53 3.31 39.58 3.01
2513 5073 2.809446 TGTTGTGACAGTCAGACTTCG 58.191 47.619 2.53 0.00 0.00 3.79
2514 5074 2.128035 GTTGTGACAGTCAGACTTCGG 58.872 52.381 2.53 0.00 0.00 4.30
2515 5075 0.032130 TGTGACAGTCAGACTTCGGC 59.968 55.000 2.53 0.00 0.00 5.54
2516 5076 0.315568 GTGACAGTCAGACTTCGGCT 59.684 55.000 2.53 0.00 0.00 5.52
2517 5077 1.540267 GTGACAGTCAGACTTCGGCTA 59.460 52.381 2.53 0.00 0.00 3.93
2518 5078 1.540267 TGACAGTCAGACTTCGGCTAC 59.460 52.381 0.00 0.00 0.00 3.58
2519 5079 1.540267 GACAGTCAGACTTCGGCTACA 59.460 52.381 0.00 0.00 0.00 2.74
2520 5080 1.269998 ACAGTCAGACTTCGGCTACAC 59.730 52.381 0.00 0.00 0.00 2.90
2521 5081 0.889306 AGTCAGACTTCGGCTACACC 59.111 55.000 0.00 0.00 0.00 4.16
2522 5082 0.108756 GTCAGACTTCGGCTACACCC 60.109 60.000 0.00 0.00 33.26 4.61
2523 5083 0.541063 TCAGACTTCGGCTACACCCA 60.541 55.000 0.00 0.00 33.26 4.51
2524 5084 0.537188 CAGACTTCGGCTACACCCAT 59.463 55.000 0.00 0.00 33.26 4.00
2525 5085 0.824759 AGACTTCGGCTACACCCATC 59.175 55.000 0.00 0.00 33.26 3.51
2526 5086 0.824759 GACTTCGGCTACACCCATCT 59.175 55.000 0.00 0.00 33.26 2.90
2527 5087 0.537188 ACTTCGGCTACACCCATCTG 59.463 55.000 0.00 0.00 33.26 2.90
2528 5088 0.824109 CTTCGGCTACACCCATCTGA 59.176 55.000 0.00 0.00 33.26 3.27
2529 5089 0.824109 TTCGGCTACACCCATCTGAG 59.176 55.000 0.00 0.00 33.26 3.35
2530 5090 1.043116 TCGGCTACACCCATCTGAGG 61.043 60.000 0.00 0.00 33.26 3.86
2531 5091 1.330655 CGGCTACACCCATCTGAGGT 61.331 60.000 0.00 0.00 38.48 3.85
2532 5092 1.789523 GGCTACACCCATCTGAGGTA 58.210 55.000 0.00 0.00 35.24 3.08
2533 5093 1.413077 GGCTACACCCATCTGAGGTAC 59.587 57.143 0.00 0.00 35.24 3.34
2535 5095 2.766828 GCTACACCCATCTGAGGTACTT 59.233 50.000 0.00 0.00 41.55 2.24
2536 5096 3.958798 GCTACACCCATCTGAGGTACTTA 59.041 47.826 0.00 0.00 41.55 2.24
2537 5097 4.404715 GCTACACCCATCTGAGGTACTTAA 59.595 45.833 0.00 0.00 41.55 1.85
2538 5098 4.820894 ACACCCATCTGAGGTACTTAAC 57.179 45.455 0.00 0.00 41.55 2.01
2572 5132 9.959721 AATTAGAAGTAACAATCACATAGGTGT 57.040 29.630 7.49 0.00 45.45 4.16
2573 5133 9.959721 ATTAGAAGTAACAATCACATAGGTGTT 57.040 29.630 7.49 0.00 45.45 3.32
2574 5134 7.907214 AGAAGTAACAATCACATAGGTGTTC 57.093 36.000 7.49 1.64 45.45 3.18
2575 5135 6.879458 AGAAGTAACAATCACATAGGTGTTCC 59.121 38.462 7.49 0.00 45.45 3.62
2576 5136 5.175859 AGTAACAATCACATAGGTGTTCCG 58.824 41.667 7.49 0.00 45.45 4.30
2577 5137 2.985896 ACAATCACATAGGTGTTCCGG 58.014 47.619 7.49 0.00 45.45 5.14
2578 5138 1.670811 CAATCACATAGGTGTTCCGGC 59.329 52.381 7.49 0.00 45.45 6.13
2579 5139 0.908910 ATCACATAGGTGTTCCGGCA 59.091 50.000 7.49 0.00 45.45 5.69
2580 5140 0.036765 TCACATAGGTGTTCCGGCAC 60.037 55.000 7.49 0.00 45.45 5.01
2581 5141 0.036388 CACATAGGTGTTCCGGCACT 60.036 55.000 5.66 0.00 40.24 4.40
2582 5142 0.249398 ACATAGGTGTTCCGGCACTC 59.751 55.000 5.66 1.19 39.21 3.51
2583 5143 0.462047 CATAGGTGTTCCGGCACTCC 60.462 60.000 16.36 16.36 39.21 3.85
2584 5144 1.623542 ATAGGTGTTCCGGCACTCCC 61.624 60.000 19.73 12.55 39.21 4.30
2585 5145 2.741878 TAGGTGTTCCGGCACTCCCT 62.742 60.000 19.73 18.28 39.21 4.20
2586 5146 2.047179 GTGTTCCGGCACTCCCTC 60.047 66.667 5.66 0.00 36.51 4.30
2587 5147 2.525629 TGTTCCGGCACTCCCTCA 60.526 61.111 5.66 0.00 0.00 3.86
2588 5148 2.266055 GTTCCGGCACTCCCTCAG 59.734 66.667 0.00 0.00 0.00 3.35
2589 5149 3.706373 TTCCGGCACTCCCTCAGC 61.706 66.667 0.00 0.00 0.00 4.26
2593 5153 3.706373 GGCACTCCCTCAGCCGAA 61.706 66.667 0.00 0.00 38.86 4.30
2594 5154 2.435059 GCACTCCCTCAGCCGAAC 60.435 66.667 0.00 0.00 0.00 3.95
2595 5155 3.059982 CACTCCCTCAGCCGAACA 58.940 61.111 0.00 0.00 0.00 3.18
2596 5156 1.371183 CACTCCCTCAGCCGAACAA 59.629 57.895 0.00 0.00 0.00 2.83
2597 5157 0.036010 CACTCCCTCAGCCGAACAAT 60.036 55.000 0.00 0.00 0.00 2.71
2598 5158 1.207089 CACTCCCTCAGCCGAACAATA 59.793 52.381 0.00 0.00 0.00 1.90
2599 5159 1.207329 ACTCCCTCAGCCGAACAATAC 59.793 52.381 0.00 0.00 0.00 1.89
2600 5160 0.174845 TCCCTCAGCCGAACAATACG 59.825 55.000 0.00 0.00 0.00 3.06
2611 5171 4.789095 CGAACAATACGGACATAAAGGG 57.211 45.455 0.00 0.00 0.00 3.95
2612 5172 3.558418 CGAACAATACGGACATAAAGGGG 59.442 47.826 0.00 0.00 0.00 4.79
2613 5173 4.520179 GAACAATACGGACATAAAGGGGT 58.480 43.478 0.00 0.00 0.00 4.95
2614 5174 5.673514 GAACAATACGGACATAAAGGGGTA 58.326 41.667 0.00 0.00 0.00 3.69
2615 5175 5.697082 ACAATACGGACATAAAGGGGTAA 57.303 39.130 0.00 0.00 0.00 2.85
2616 5176 6.064735 ACAATACGGACATAAAGGGGTAAA 57.935 37.500 0.00 0.00 0.00 2.01
2617 5177 5.882000 ACAATACGGACATAAAGGGGTAAAC 59.118 40.000 0.00 0.00 0.00 2.01
2618 5178 5.697082 ATACGGACATAAAGGGGTAAACA 57.303 39.130 0.00 0.00 0.00 2.83
2619 5179 4.579647 ACGGACATAAAGGGGTAAACAT 57.420 40.909 0.00 0.00 0.00 2.71
2620 5180 5.697082 ACGGACATAAAGGGGTAAACATA 57.303 39.130 0.00 0.00 0.00 2.29
2621 5181 5.677567 ACGGACATAAAGGGGTAAACATAG 58.322 41.667 0.00 0.00 0.00 2.23
2622 5182 5.061179 CGGACATAAAGGGGTAAACATAGG 58.939 45.833 0.00 0.00 0.00 2.57
2623 5183 5.163280 CGGACATAAAGGGGTAAACATAGGA 60.163 44.000 0.00 0.00 0.00 2.94
2624 5184 6.296803 GGACATAAAGGGGTAAACATAGGAG 58.703 44.000 0.00 0.00 0.00 3.69
2625 5185 5.691896 ACATAAAGGGGTAAACATAGGAGC 58.308 41.667 0.00 0.00 0.00 4.70
2626 5186 3.664551 AAAGGGGTAAACATAGGAGCC 57.335 47.619 0.00 0.00 0.00 4.70
2627 5187 2.280308 AGGGGTAAACATAGGAGCCA 57.720 50.000 0.00 0.00 32.17 4.75
2628 5188 2.127708 AGGGGTAAACATAGGAGCCAG 58.872 52.381 0.00 0.00 32.17 4.85
2629 5189 1.143073 GGGGTAAACATAGGAGCCAGG 59.857 57.143 0.00 0.00 32.17 4.45
2630 5190 1.477014 GGGTAAACATAGGAGCCAGGC 60.477 57.143 1.84 1.84 0.00 4.85
2631 5191 1.211949 GGTAAACATAGGAGCCAGGCA 59.788 52.381 15.80 0.00 0.00 4.75
2632 5192 2.356741 GGTAAACATAGGAGCCAGGCAA 60.357 50.000 15.80 0.00 0.00 4.52
2633 5193 1.839424 AAACATAGGAGCCAGGCAAC 58.161 50.000 15.80 5.65 0.00 4.17
2634 5194 0.034089 AACATAGGAGCCAGGCAACC 60.034 55.000 15.80 16.54 37.17 3.77
2635 5195 0.916358 ACATAGGAGCCAGGCAACCT 60.916 55.000 26.44 26.44 39.73 3.50
2636 5196 1.131638 CATAGGAGCCAGGCAACCTA 58.868 55.000 28.28 28.28 41.15 3.08
2637 5197 1.701847 CATAGGAGCCAGGCAACCTAT 59.298 52.381 29.52 29.52 44.39 2.57
2638 5198 1.893315 TAGGAGCCAGGCAACCTATT 58.107 50.000 24.77 11.39 38.21 1.73
2639 5199 0.257039 AGGAGCCAGGCAACCTATTG 59.743 55.000 23.50 0.00 36.32 1.90
2640 5200 0.255890 GGAGCCAGGCAACCTATTGA 59.744 55.000 15.80 0.00 38.15 2.57
2641 5201 1.673168 GAGCCAGGCAACCTATTGAG 58.327 55.000 15.80 0.00 38.15 3.02
2642 5202 0.394899 AGCCAGGCAACCTATTGAGC 60.395 55.000 15.80 0.00 38.15 4.26
2646 5206 2.799176 GGCAACCTATTGAGCCAGG 58.201 57.895 0.00 0.00 46.26 4.45
2647 5207 0.255890 GGCAACCTATTGAGCCAGGA 59.744 55.000 0.00 0.00 46.26 3.86
2648 5208 1.383523 GCAACCTATTGAGCCAGGAC 58.616 55.000 0.00 0.00 38.15 3.85
2649 5209 1.340017 GCAACCTATTGAGCCAGGACA 60.340 52.381 0.00 0.00 38.15 4.02
2650 5210 2.359900 CAACCTATTGAGCCAGGACAC 58.640 52.381 0.00 0.00 38.15 3.67
2651 5211 1.656587 ACCTATTGAGCCAGGACACA 58.343 50.000 0.00 0.00 35.76 3.72
2652 5212 1.985159 ACCTATTGAGCCAGGACACAA 59.015 47.619 0.00 0.00 35.76 3.33
2653 5213 2.026822 ACCTATTGAGCCAGGACACAAG 60.027 50.000 0.00 0.00 35.76 3.16
2654 5214 2.026822 CCTATTGAGCCAGGACACAAGT 60.027 50.000 0.00 0.00 33.42 3.16
2655 5215 2.191128 ATTGAGCCAGGACACAAGTC 57.809 50.000 0.00 0.00 44.21 3.01
2656 5216 0.249868 TTGAGCCAGGACACAAGTCG 60.250 55.000 0.00 0.00 45.92 4.18
2657 5217 1.112916 TGAGCCAGGACACAAGTCGA 61.113 55.000 0.00 0.00 45.92 4.20
2658 5218 0.033504 GAGCCAGGACACAAGTCGAA 59.966 55.000 0.00 0.00 45.92 3.71
2659 5219 0.468226 AGCCAGGACACAAGTCGAAA 59.532 50.000 0.00 0.00 45.92 3.46
2660 5220 1.072331 AGCCAGGACACAAGTCGAAAT 59.928 47.619 0.00 0.00 45.92 2.17
2661 5221 1.464997 GCCAGGACACAAGTCGAAATC 59.535 52.381 0.00 0.00 45.92 2.17
2662 5222 1.726791 CCAGGACACAAGTCGAAATCG 59.273 52.381 0.00 0.00 45.92 3.34
2663 5223 2.609491 CCAGGACACAAGTCGAAATCGA 60.609 50.000 0.58 0.58 45.92 3.59
2676 5236 5.469373 TCGAAATCGATGCATATAATGGC 57.531 39.130 0.00 0.00 44.22 4.40
2677 5237 4.032786 TCGAAATCGATGCATATAATGGCG 59.967 41.667 0.00 0.00 44.22 5.69
2678 5238 4.201714 CGAAATCGATGCATATAATGGCGT 60.202 41.667 0.00 0.00 43.02 5.68
2679 5239 5.005299 CGAAATCGATGCATATAATGGCGTA 59.995 40.000 0.00 0.00 43.02 4.42
2680 5240 6.454981 CGAAATCGATGCATATAATGGCGTAA 60.455 38.462 0.00 0.00 43.02 3.18
2681 5241 5.973651 ATCGATGCATATAATGGCGTAAG 57.026 39.130 0.00 0.00 43.44 2.34
2682 5242 4.180817 TCGATGCATATAATGGCGTAAGG 58.819 43.478 0.00 0.00 38.28 2.69
2683 5243 3.932710 CGATGCATATAATGGCGTAAGGT 59.067 43.478 0.00 0.00 38.28 3.50
2684 5244 4.032900 CGATGCATATAATGGCGTAAGGTC 59.967 45.833 0.00 0.00 38.28 3.85
2685 5245 3.670625 TGCATATAATGGCGTAAGGTCC 58.329 45.455 0.00 0.00 38.28 4.46
2686 5246 2.671396 GCATATAATGGCGTAAGGTCCG 59.329 50.000 0.00 0.00 38.28 4.79
2687 5247 3.615592 GCATATAATGGCGTAAGGTCCGA 60.616 47.826 0.00 0.00 38.28 4.55
2688 5248 2.814280 ATAATGGCGTAAGGTCCGAG 57.186 50.000 0.00 0.00 38.28 4.63
2689 5249 0.748450 TAATGGCGTAAGGTCCGAGG 59.252 55.000 0.00 0.00 38.28 4.63
2690 5250 0.974010 AATGGCGTAAGGTCCGAGGA 60.974 55.000 0.00 0.00 38.28 3.71
2691 5251 0.974010 ATGGCGTAAGGTCCGAGGAA 60.974 55.000 0.00 0.00 38.28 3.36
2692 5252 1.141234 GGCGTAAGGTCCGAGGAAG 59.859 63.158 0.00 0.00 38.28 3.46
2693 5253 1.602327 GGCGTAAGGTCCGAGGAAGT 61.602 60.000 0.00 0.00 38.28 3.01
2694 5254 0.179142 GCGTAAGGTCCGAGGAAGTC 60.179 60.000 0.00 0.00 38.28 3.01
2695 5255 1.171308 CGTAAGGTCCGAGGAAGTCA 58.829 55.000 0.00 0.00 0.00 3.41
2696 5256 1.749634 CGTAAGGTCCGAGGAAGTCAT 59.250 52.381 0.00 0.00 0.00 3.06
2697 5257 2.223525 CGTAAGGTCCGAGGAAGTCATC 60.224 54.545 0.00 0.00 0.00 2.92
2702 5262 2.278857 CGAGGAAGTCATCGGCGG 60.279 66.667 7.21 0.00 45.11 6.13
2703 5263 2.586357 GAGGAAGTCATCGGCGGC 60.586 66.667 7.21 0.00 0.00 6.53
2704 5264 3.077556 AGGAAGTCATCGGCGGCT 61.078 61.111 7.21 0.00 0.00 5.52
2705 5265 2.586357 GGAAGTCATCGGCGGCTC 60.586 66.667 7.21 0.00 0.00 4.70
2706 5266 2.586357 GAAGTCATCGGCGGCTCC 60.586 66.667 7.21 0.00 0.00 4.70
2707 5267 3.371097 GAAGTCATCGGCGGCTCCA 62.371 63.158 7.21 0.00 34.01 3.86
2708 5268 3.665675 AAGTCATCGGCGGCTCCAC 62.666 63.158 7.21 0.00 34.01 4.02
2721 5281 0.250513 GCTCCACGGAGAACCTTGAT 59.749 55.000 17.47 0.00 44.53 2.57
2722 5282 2.009042 GCTCCACGGAGAACCTTGATG 61.009 57.143 17.47 0.00 44.53 3.07
2751 5311 1.774856 ACTGGTTGTCTTTGTAGCCCT 59.225 47.619 0.00 0.00 0.00 5.19
2762 5322 1.035932 TGTAGCCCTCGAGTACCTGC 61.036 60.000 12.31 8.30 0.00 4.85
2763 5323 1.035932 GTAGCCCTCGAGTACCTGCA 61.036 60.000 12.31 0.00 0.00 4.41
2776 5336 0.893270 ACCTGCATTGGCGCTTAACA 60.893 50.000 7.64 0.00 45.35 2.41
2778 5338 1.135024 CCTGCATTGGCGCTTAACAAT 60.135 47.619 7.64 5.48 45.35 2.71
2785 5345 0.096454 GGCGCTTAACAATGTCCGAC 59.904 55.000 7.64 0.00 0.00 4.79
2818 5378 4.443598 GGTCCGAGGAGAATGAAATAGCTT 60.444 45.833 0.00 0.00 0.00 3.74
2826 5386 6.995091 AGGAGAATGAAATAGCTTTAGCGATT 59.005 34.615 4.52 4.52 45.88 3.34
2878 5443 0.536233 TGTATGCGCAAACTGTGGGT 60.536 50.000 17.11 0.00 42.13 4.51
2881 5446 1.391157 ATGCGCAAACTGTGGGTGTT 61.391 50.000 17.11 0.00 42.13 3.32
2916 5481 7.787725 ATATTAAAAAGAGTCGAGCCGAAAT 57.212 32.000 0.00 0.00 37.72 2.17
2928 5493 3.846896 CGAGCCGAAATATCTAGCTAACG 59.153 47.826 0.00 0.00 34.21 3.18
2969 5534 7.912056 AGATATTACAAATCATCGTGATGGG 57.088 36.000 9.81 1.27 37.15 4.00
2970 5535 7.453393 AGATATTACAAATCATCGTGATGGGT 58.547 34.615 9.81 6.38 37.15 4.51
2971 5536 7.604164 AGATATTACAAATCATCGTGATGGGTC 59.396 37.037 9.81 0.00 37.15 4.46
2972 5537 2.643551 ACAAATCATCGTGATGGGTCC 58.356 47.619 9.81 0.00 37.15 4.46
2973 5538 1.599071 CAAATCATCGTGATGGGTCCG 59.401 52.381 9.81 0.00 37.15 4.79
2974 5539 1.119684 AATCATCGTGATGGGTCCGA 58.880 50.000 9.81 0.00 37.15 4.55
2975 5540 1.119684 ATCATCGTGATGGGTCCGAA 58.880 50.000 9.81 0.00 35.43 4.30
2976 5541 0.174845 TCATCGTGATGGGTCCGAAC 59.825 55.000 9.81 0.00 39.24 3.95
2977 5542 0.175760 CATCGTGATGGGTCCGAACT 59.824 55.000 1.81 0.00 35.24 3.01
2978 5543 0.902531 ATCGTGATGGGTCCGAACTT 59.097 50.000 0.00 0.00 33.15 2.66
2979 5544 0.245539 TCGTGATGGGTCCGAACTTC 59.754 55.000 0.00 0.00 0.00 3.01
2980 5545 0.739813 CGTGATGGGTCCGAACTTCC 60.740 60.000 0.00 0.00 0.00 3.46
2981 5546 0.739813 GTGATGGGTCCGAACTTCCG 60.740 60.000 0.00 0.00 0.00 4.30
2990 5555 2.443887 CCGAACTTCCGGTTGTTAGA 57.556 50.000 17.93 0.00 44.23 2.10
2991 5556 2.968675 CCGAACTTCCGGTTGTTAGAT 58.031 47.619 17.93 0.00 44.23 1.98
2992 5557 3.332034 CCGAACTTCCGGTTGTTAGATT 58.668 45.455 17.93 0.00 44.23 2.40
2993 5558 3.370061 CCGAACTTCCGGTTGTTAGATTC 59.630 47.826 17.93 6.25 44.23 2.52
2994 5559 4.243270 CGAACTTCCGGTTGTTAGATTCT 58.757 43.478 13.09 0.00 38.41 2.40
2995 5560 4.326548 CGAACTTCCGGTTGTTAGATTCTC 59.673 45.833 13.09 1.58 38.41 2.87
2996 5561 5.480205 GAACTTCCGGTTGTTAGATTCTCT 58.520 41.667 13.09 0.00 38.41 3.10
2997 5562 4.822026 ACTTCCGGTTGTTAGATTCTCTG 58.178 43.478 0.00 0.00 0.00 3.35
2998 5563 3.887621 TCCGGTTGTTAGATTCTCTGG 57.112 47.619 0.00 0.00 0.00 3.86
2999 5564 3.437213 TCCGGTTGTTAGATTCTCTGGA 58.563 45.455 0.00 0.00 0.00 3.86
3000 5565 4.030913 TCCGGTTGTTAGATTCTCTGGAT 58.969 43.478 0.00 0.00 0.00 3.41
3001 5566 4.099573 TCCGGTTGTTAGATTCTCTGGATC 59.900 45.833 0.00 0.00 0.00 3.36
3002 5567 4.045104 CGGTTGTTAGATTCTCTGGATCG 58.955 47.826 0.00 0.00 0.00 3.69
3003 5568 4.372656 GGTTGTTAGATTCTCTGGATCGG 58.627 47.826 0.00 0.00 0.00 4.18
3004 5569 4.141914 GGTTGTTAGATTCTCTGGATCGGT 60.142 45.833 0.00 0.00 0.00 4.69
3005 5570 5.420409 GTTGTTAGATTCTCTGGATCGGTT 58.580 41.667 0.00 0.00 0.00 4.44
3006 5571 6.406624 GGTTGTTAGATTCTCTGGATCGGTTA 60.407 42.308 0.00 0.00 0.00 2.85
3007 5572 6.392625 TGTTAGATTCTCTGGATCGGTTAG 57.607 41.667 0.00 0.00 0.00 2.34
3008 5573 5.302059 TGTTAGATTCTCTGGATCGGTTAGG 59.698 44.000 0.00 0.00 0.00 2.69
3009 5574 2.630580 AGATTCTCTGGATCGGTTAGGC 59.369 50.000 0.00 0.00 0.00 3.93
3010 5575 2.160721 TTCTCTGGATCGGTTAGGCT 57.839 50.000 0.00 0.00 0.00 4.58
3011 5576 3.308035 TTCTCTGGATCGGTTAGGCTA 57.692 47.619 0.00 0.00 0.00 3.93
3012 5577 2.865079 TCTCTGGATCGGTTAGGCTAG 58.135 52.381 0.00 0.00 0.00 3.42
3013 5578 2.442126 TCTCTGGATCGGTTAGGCTAGA 59.558 50.000 0.00 0.00 0.00 2.43
3014 5579 3.074687 TCTCTGGATCGGTTAGGCTAGAT 59.925 47.826 0.00 0.00 0.00 1.98
3015 5580 3.422796 TCTGGATCGGTTAGGCTAGATC 58.577 50.000 11.78 11.78 38.88 2.75
3016 5581 3.157881 CTGGATCGGTTAGGCTAGATCA 58.842 50.000 18.49 8.38 40.74 2.92
3017 5582 3.572642 TGGATCGGTTAGGCTAGATCAA 58.427 45.455 18.49 9.06 40.74 2.57
3018 5583 4.160329 TGGATCGGTTAGGCTAGATCAAT 58.840 43.478 18.49 2.62 40.74 2.57
3019 5584 4.220821 TGGATCGGTTAGGCTAGATCAATC 59.779 45.833 18.49 9.60 40.74 2.67
3020 5585 4.382147 GGATCGGTTAGGCTAGATCAATCC 60.382 50.000 18.49 13.43 40.74 3.01
3021 5586 2.557056 TCGGTTAGGCTAGATCAATCCG 59.443 50.000 0.00 0.10 37.29 4.18
3022 5587 2.352814 CGGTTAGGCTAGATCAATCCGG 60.353 54.545 0.00 0.00 33.20 5.14
3023 5588 2.633481 GGTTAGGCTAGATCAATCCGGT 59.367 50.000 0.00 0.00 0.00 5.28
3024 5589 3.830755 GGTTAGGCTAGATCAATCCGGTA 59.169 47.826 0.00 0.00 0.00 4.02
3025 5590 4.282703 GGTTAGGCTAGATCAATCCGGTAA 59.717 45.833 0.00 0.00 0.00 2.85
3026 5591 5.046520 GGTTAGGCTAGATCAATCCGGTAAT 60.047 44.000 0.00 0.00 0.00 1.89
3027 5592 4.810191 AGGCTAGATCAATCCGGTAATC 57.190 45.455 0.00 0.62 0.00 1.75
3028 5593 3.515901 AGGCTAGATCAATCCGGTAATCC 59.484 47.826 0.00 0.00 0.00 3.01
3029 5594 3.515901 GGCTAGATCAATCCGGTAATCCT 59.484 47.826 0.00 0.00 0.00 3.24
3030 5595 4.710375 GGCTAGATCAATCCGGTAATCCTA 59.290 45.833 0.00 0.00 0.00 2.94
3031 5596 5.394333 GGCTAGATCAATCCGGTAATCCTAC 60.394 48.000 0.00 0.00 0.00 3.18
3032 5597 5.394333 GCTAGATCAATCCGGTAATCCTACC 60.394 48.000 0.00 0.00 43.86 3.18
3033 5598 4.753186 AGATCAATCCGGTAATCCTACCT 58.247 43.478 0.00 0.00 44.96 3.08
3034 5599 5.155905 AGATCAATCCGGTAATCCTACCTT 58.844 41.667 0.00 0.00 44.96 3.50
3035 5600 4.950205 TCAATCCGGTAATCCTACCTTC 57.050 45.455 0.00 0.00 44.96 3.46
3036 5601 4.553678 TCAATCCGGTAATCCTACCTTCT 58.446 43.478 0.00 0.00 44.96 2.85
3037 5602 4.587684 TCAATCCGGTAATCCTACCTTCTC 59.412 45.833 0.00 0.00 44.96 2.87
3038 5603 2.954792 TCCGGTAATCCTACCTTCTCC 58.045 52.381 0.00 0.00 44.96 3.71
3039 5604 2.517127 TCCGGTAATCCTACCTTCTCCT 59.483 50.000 0.00 0.00 44.96 3.69
3040 5605 3.052338 TCCGGTAATCCTACCTTCTCCTT 60.052 47.826 0.00 0.00 44.96 3.36
3041 5606 3.069729 CCGGTAATCCTACCTTCTCCTTG 59.930 52.174 0.00 0.00 44.96 3.61
3042 5607 3.069729 CGGTAATCCTACCTTCTCCTTGG 59.930 52.174 0.17 0.00 44.96 3.61
3043 5608 3.391626 GGTAATCCTACCTTCTCCTTGGG 59.608 52.174 0.00 0.00 43.92 4.12
3044 5609 2.972153 ATCCTACCTTCTCCTTGGGT 57.028 50.000 0.00 0.00 37.16 4.51
3045 5610 2.735259 TCCTACCTTCTCCTTGGGTT 57.265 50.000 0.00 0.00 34.86 4.11
3046 5611 2.266279 TCCTACCTTCTCCTTGGGTTG 58.734 52.381 0.00 0.00 34.86 3.77
3047 5612 2.158066 TCCTACCTTCTCCTTGGGTTGA 60.158 50.000 0.00 0.00 34.86 3.18
3048 5613 2.846827 CCTACCTTCTCCTTGGGTTGAT 59.153 50.000 0.00 0.00 34.86 2.57
3049 5614 2.887151 ACCTTCTCCTTGGGTTGATG 57.113 50.000 0.00 0.00 0.00 3.07
3050 5615 2.348472 ACCTTCTCCTTGGGTTGATGA 58.652 47.619 0.00 0.00 0.00 2.92
3051 5616 2.716424 ACCTTCTCCTTGGGTTGATGAA 59.284 45.455 0.00 0.00 0.00 2.57
3052 5617 3.084786 CCTTCTCCTTGGGTTGATGAAC 58.915 50.000 0.00 0.00 0.00 3.18
3053 5618 3.245052 CCTTCTCCTTGGGTTGATGAACT 60.245 47.826 0.00 0.00 32.15 3.01
3054 5619 3.703001 TCTCCTTGGGTTGATGAACTC 57.297 47.619 0.00 0.00 32.55 3.01
3055 5620 2.028112 TCTCCTTGGGTTGATGAACTCG 60.028 50.000 0.00 0.00 34.99 4.18
3056 5621 1.974957 TCCTTGGGTTGATGAACTCGA 59.025 47.619 0.00 0.00 34.99 4.04
3057 5622 2.028112 TCCTTGGGTTGATGAACTCGAG 60.028 50.000 11.84 11.84 42.08 4.04
3058 5623 1.734465 CTTGGGTTGATGAACTCGAGC 59.266 52.381 13.61 0.00 37.27 5.03
3059 5624 2.768834 GGGTTGATGAACTCGAGCC 58.231 57.895 13.61 5.33 46.19 4.70
3060 5625 1.084370 GGGTTGATGAACTCGAGCCG 61.084 60.000 13.61 0.00 44.15 5.52
3061 5626 1.084370 GGTTGATGAACTCGAGCCGG 61.084 60.000 13.61 0.00 30.69 6.13
3062 5627 0.108804 GTTGATGAACTCGAGCCGGA 60.109 55.000 13.61 0.00 0.00 5.14
3063 5628 0.173481 TTGATGAACTCGAGCCGGAG 59.827 55.000 13.61 0.00 39.97 4.63
3064 5629 1.590259 GATGAACTCGAGCCGGAGC 60.590 63.158 13.61 0.00 37.57 4.70
3065 5630 2.962697 GATGAACTCGAGCCGGAGCC 62.963 65.000 13.61 0.00 41.25 4.70
3066 5631 4.856607 GAACTCGAGCCGGAGCCG 62.857 72.222 13.61 4.70 41.25 5.52
3080 5645 2.185867 GCCGGTCATGGCGAAGTA 59.814 61.111 1.90 0.00 46.75 2.24
3081 5646 1.883084 GCCGGTCATGGCGAAGTAG 60.883 63.158 1.90 0.00 46.75 2.57
3082 5647 1.515954 CCGGTCATGGCGAAGTAGT 59.484 57.895 0.00 0.00 0.00 2.73
3083 5648 0.806102 CCGGTCATGGCGAAGTAGTG 60.806 60.000 0.00 0.00 0.00 2.74
3084 5649 0.806102 CGGTCATGGCGAAGTAGTGG 60.806 60.000 0.00 0.00 0.00 4.00
3085 5650 1.090052 GGTCATGGCGAAGTAGTGGC 61.090 60.000 0.00 0.00 0.00 5.01
3089 5654 4.078516 GGCGAAGTAGTGGCCGGT 62.079 66.667 1.90 0.00 41.76 5.28
3090 5655 2.813908 GCGAAGTAGTGGCCGGTG 60.814 66.667 1.90 0.00 0.00 4.94
3091 5656 2.967397 CGAAGTAGTGGCCGGTGA 59.033 61.111 1.90 0.00 0.00 4.02
3092 5657 1.515954 CGAAGTAGTGGCCGGTGAT 59.484 57.895 1.90 0.00 0.00 3.06
3093 5658 0.806102 CGAAGTAGTGGCCGGTGATG 60.806 60.000 1.90 0.00 0.00 3.07
3094 5659 0.462047 GAAGTAGTGGCCGGTGATGG 60.462 60.000 1.90 0.00 0.00 3.51
3102 5667 3.303189 CCGGTGATGGCAGAGAGT 58.697 61.111 0.00 0.00 0.00 3.24
3103 5668 1.153489 CCGGTGATGGCAGAGAGTG 60.153 63.158 0.00 0.00 0.00 3.51
3104 5669 1.153489 CGGTGATGGCAGAGAGTGG 60.153 63.158 0.00 0.00 0.00 4.00
3105 5670 1.607801 CGGTGATGGCAGAGAGTGGA 61.608 60.000 0.00 0.00 0.00 4.02
3106 5671 0.835941 GGTGATGGCAGAGAGTGGAT 59.164 55.000 0.00 0.00 0.00 3.41
3107 5672 1.474677 GGTGATGGCAGAGAGTGGATG 60.475 57.143 0.00 0.00 0.00 3.51
3108 5673 0.835276 TGATGGCAGAGAGTGGATGG 59.165 55.000 0.00 0.00 0.00 3.51
3109 5674 0.534652 GATGGCAGAGAGTGGATGGC 60.535 60.000 0.00 0.00 39.75 4.40
3110 5675 2.202987 GGCAGAGAGTGGATGGCG 60.203 66.667 0.00 0.00 0.00 5.69
3111 5676 2.202987 GCAGAGAGTGGATGGCGG 60.203 66.667 0.00 0.00 0.00 6.13
3112 5677 3.023949 GCAGAGAGTGGATGGCGGT 62.024 63.158 0.00 0.00 0.00 5.68
3113 5678 1.153489 CAGAGAGTGGATGGCGGTG 60.153 63.158 0.00 0.00 0.00 4.94
3114 5679 2.187946 GAGAGTGGATGGCGGTGG 59.812 66.667 0.00 0.00 0.00 4.61
3115 5680 2.607750 AGAGTGGATGGCGGTGGT 60.608 61.111 0.00 0.00 0.00 4.16
3116 5681 2.436646 GAGTGGATGGCGGTGGTG 60.437 66.667 0.00 0.00 0.00 4.17
3117 5682 3.976701 GAGTGGATGGCGGTGGTGG 62.977 68.421 0.00 0.00 0.00 4.61
3118 5683 4.028490 GTGGATGGCGGTGGTGGA 62.028 66.667 0.00 0.00 0.00 4.02
3119 5684 3.716195 TGGATGGCGGTGGTGGAG 61.716 66.667 0.00 0.00 0.00 3.86
3121 5686 4.101448 GATGGCGGTGGTGGAGCT 62.101 66.667 0.00 0.00 0.00 4.09
3122 5687 3.628646 GATGGCGGTGGTGGAGCTT 62.629 63.158 0.00 0.00 0.00 3.74
3123 5688 3.628646 ATGGCGGTGGTGGAGCTTC 62.629 63.158 0.00 0.00 0.00 3.86
3126 5691 4.760047 CGGTGGTGGAGCTTCCCG 62.760 72.222 0.00 0.00 35.03 5.14
3127 5692 3.637273 GGTGGTGGAGCTTCCCGT 61.637 66.667 0.00 0.00 35.03 5.28
3128 5693 2.358737 GTGGTGGAGCTTCCCGTG 60.359 66.667 0.00 0.00 35.03 4.94
3129 5694 2.525629 TGGTGGAGCTTCCCGTGA 60.526 61.111 0.00 0.00 35.03 4.35
3130 5695 2.266055 GGTGGAGCTTCCCGTGAG 59.734 66.667 0.00 0.00 35.03 3.51
3131 5696 2.435059 GTGGAGCTTCCCGTGAGC 60.435 66.667 0.00 0.00 40.43 4.26
3132 5697 2.922503 TGGAGCTTCCCGTGAGCA 60.923 61.111 0.00 0.00 42.56 4.26
3133 5698 2.435059 GGAGCTTCCCGTGAGCAC 60.435 66.667 0.00 0.00 42.56 4.40
3134 5699 2.435059 GAGCTTCCCGTGAGCACC 60.435 66.667 0.00 0.00 42.56 5.01
3135 5700 4.379243 AGCTTCCCGTGAGCACCG 62.379 66.667 4.99 0.00 42.56 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 8.775220 TCACAACAATCGTAATACAACAAAAG 57.225 30.769 0.00 0.00 0.00 2.27
43 44 7.659652 TGACAATCACAACAATCGTAATACA 57.340 32.000 0.00 0.00 0.00 2.29
50 51 9.773328 ACTATTAAATGACAATCACAACAATCG 57.227 29.630 0.00 0.00 0.00 3.34
54 55 9.173021 CCCTACTATTAAATGACAATCACAACA 57.827 33.333 0.00 0.00 0.00 3.33
87 88 9.612620 GCTTAATGTGCTTCCATATATTGTTAC 57.387 33.333 0.00 0.00 0.00 2.50
96 97 7.233632 AGGATATTGCTTAATGTGCTTCCATA 58.766 34.615 0.00 0.00 0.00 2.74
98 99 5.448654 AGGATATTGCTTAATGTGCTTCCA 58.551 37.500 0.00 0.00 0.00 3.53
152 153 9.543018 GATCACCTTCGTAAAAGACAAAATAAG 57.457 33.333 0.00 0.00 0.00 1.73
160 161 9.915629 ATATATGAGATCACCTTCGTAAAAGAC 57.084 33.333 0.00 0.00 0.00 3.01
167 168 7.631594 GCACCATATATATGAGATCACCTTCGT 60.632 40.741 21.97 5.83 35.75 3.85
168 169 6.699204 GCACCATATATATGAGATCACCTTCG 59.301 42.308 21.97 5.27 35.75 3.79
169 170 6.699204 CGCACCATATATATGAGATCACCTTC 59.301 42.308 21.97 1.44 35.75 3.46
210 217 7.762615 CAGGTGCTGATTTAATTCAATCACAAT 59.237 33.333 21.27 13.24 38.09 2.71
224 233 4.685924 CTTGTTTTGTCAGGTGCTGATTT 58.314 39.130 0.00 0.00 42.73 2.17
230 239 1.559831 GTGCTTGTTTTGTCAGGTGC 58.440 50.000 0.00 0.00 0.00 5.01
234 243 3.497118 TGTTTCGTGCTTGTTTTGTCAG 58.503 40.909 0.00 0.00 0.00 3.51
235 244 3.560902 TGTTTCGTGCTTGTTTTGTCA 57.439 38.095 0.00 0.00 0.00 3.58
237 246 4.303282 ACTTTGTTTCGTGCTTGTTTTGT 58.697 34.783 0.00 0.00 0.00 2.83
274 283 7.333528 TCTCCTCCCATTAAAAATCAAATCG 57.666 36.000 0.00 0.00 0.00 3.34
287 296 6.959366 TCATTGGTTTATTTTCTCCTCCCATT 59.041 34.615 0.00 0.00 0.00 3.16
290 299 6.187682 TCTCATTGGTTTATTTTCTCCTCCC 58.812 40.000 0.00 0.00 0.00 4.30
318 328 0.184451 CCCACCATCCCCTCTCATTG 59.816 60.000 0.00 0.00 0.00 2.82
319 329 0.046242 TCCCACCATCCCCTCTCATT 59.954 55.000 0.00 0.00 0.00 2.57
320 330 0.401105 CTCCCACCATCCCCTCTCAT 60.401 60.000 0.00 0.00 0.00 2.90
321 331 1.003442 CTCCCACCATCCCCTCTCA 59.997 63.158 0.00 0.00 0.00 3.27
322 332 1.768077 CCTCCCACCATCCCCTCTC 60.768 68.421 0.00 0.00 0.00 3.20
323 333 2.374342 CCTCCCACCATCCCCTCT 59.626 66.667 0.00 0.00 0.00 3.69
324 334 2.042930 ACCTCCCACCATCCCCTC 59.957 66.667 0.00 0.00 0.00 4.30
325 335 2.286425 CACCTCCCACCATCCCCT 60.286 66.667 0.00 0.00 0.00 4.79
326 336 2.286121 TCACCTCCCACCATCCCC 60.286 66.667 0.00 0.00 0.00 4.81
327 337 2.378634 CCTCACCTCCCACCATCCC 61.379 68.421 0.00 0.00 0.00 3.85
328 338 3.049080 GCCTCACCTCCCACCATCC 62.049 68.421 0.00 0.00 0.00 3.51
333 343 2.507407 TATTTTGCCTCACCTCCCAC 57.493 50.000 0.00 0.00 0.00 4.61
353 366 9.689501 TTCTCCTCACCGGTTTATTTATTTATT 57.310 29.630 2.97 0.00 0.00 1.40
355 368 7.281549 GCTTCTCCTCACCGGTTTATTTATTTA 59.718 37.037 2.97 0.00 0.00 1.40
357 370 5.589050 GCTTCTCCTCACCGGTTTATTTATT 59.411 40.000 2.97 0.00 0.00 1.40
359 372 4.224370 AGCTTCTCCTCACCGGTTTATTTA 59.776 41.667 2.97 0.00 0.00 1.40
367 380 0.970937 TGGTAGCTTCTCCTCACCGG 60.971 60.000 0.00 0.00 31.64 5.28
370 383 3.618690 ACATTGGTAGCTTCTCCTCAC 57.381 47.619 0.00 0.00 0.00 3.51
409 422 7.069578 TCCTCACAAGTAGGATTATTACAGGAC 59.930 40.741 0.00 0.00 38.24 3.85
422 435 1.208293 GGGCTTCTCCTCACAAGTAGG 59.792 57.143 0.00 0.00 35.26 3.18
434 447 6.308566 TCTATCTACTCCTAAAGGGCTTCTC 58.691 44.000 0.00 0.00 35.41 2.87
498 511 1.760613 TCCCCAACGGAGCAATAGTAG 59.239 52.381 0.00 0.00 34.86 2.57
522 535 5.499139 TTCTTTGGCAGTACTGTTCTTTG 57.501 39.130 23.44 10.32 0.00 2.77
523 536 7.665559 TGATATTCTTTGGCAGTACTGTTCTTT 59.334 33.333 23.44 5.12 0.00 2.52
524 537 7.168219 TGATATTCTTTGGCAGTACTGTTCTT 58.832 34.615 23.44 4.55 0.00 2.52
525 538 6.711277 TGATATTCTTTGGCAGTACTGTTCT 58.289 36.000 23.44 3.94 0.00 3.01
526 539 6.037610 CCTGATATTCTTTGGCAGTACTGTTC 59.962 42.308 23.44 16.11 0.00 3.18
527 540 5.882557 CCTGATATTCTTTGGCAGTACTGTT 59.117 40.000 23.44 2.68 0.00 3.16
528 541 5.045578 ACCTGATATTCTTTGGCAGTACTGT 60.046 40.000 23.44 4.27 0.00 3.55
529 542 5.295292 CACCTGATATTCTTTGGCAGTACTG 59.705 44.000 18.93 18.93 0.00 2.74
530 543 5.431765 CACCTGATATTCTTTGGCAGTACT 58.568 41.667 0.00 0.00 0.00 2.73
531 544 4.035675 GCACCTGATATTCTTTGGCAGTAC 59.964 45.833 0.00 0.00 0.00 2.73
532 545 4.080356 AGCACCTGATATTCTTTGGCAGTA 60.080 41.667 0.00 0.00 0.00 2.74
533 546 3.019564 GCACCTGATATTCTTTGGCAGT 58.980 45.455 0.00 0.00 0.00 4.40
534 547 3.285484 AGCACCTGATATTCTTTGGCAG 58.715 45.455 0.00 0.00 0.00 4.85
535 548 3.282021 GAGCACCTGATATTCTTTGGCA 58.718 45.455 0.00 0.00 0.00 4.92
536 549 2.620585 GGAGCACCTGATATTCTTTGGC 59.379 50.000 0.00 0.00 0.00 4.52
537 550 2.874701 CGGAGCACCTGATATTCTTTGG 59.125 50.000 0.00 0.00 0.00 3.28
538 551 2.874701 CCGGAGCACCTGATATTCTTTG 59.125 50.000 0.00 0.00 0.00 2.77
539 552 2.771943 TCCGGAGCACCTGATATTCTTT 59.228 45.455 0.00 0.00 0.00 2.52
540 553 2.366916 CTCCGGAGCACCTGATATTCTT 59.633 50.000 20.67 0.00 0.00 2.52
591 604 3.838271 GAGATCCAGCGGCGGACA 61.838 66.667 9.78 0.00 38.07 4.02
595 608 0.943359 GAATCAGAGATCCAGCGGCG 60.943 60.000 0.51 0.51 0.00 6.46
609 622 3.087781 TCAAATGTCGCCCATTGAATCA 58.912 40.909 1.60 0.00 43.04 2.57
622 635 5.443693 GCAAAACTCGCATTGATCAAATGTC 60.444 40.000 13.09 7.08 46.37 3.06
637 650 4.858935 TGAAGGATTTTCTGCAAAACTCG 58.141 39.130 0.00 0.00 34.24 4.18
659 672 6.435277 ACCAAAGCATTATCTCAGTGATGTTT 59.565 34.615 0.00 0.00 36.65 2.83
666 679 4.263462 TGTGGACCAAAGCATTATCTCAGT 60.263 41.667 0.00 0.00 0.00 3.41
668 681 4.299586 TGTGGACCAAAGCATTATCTCA 57.700 40.909 0.00 0.00 0.00 3.27
684 705 5.202765 TGACTAGTATTACGGGAATGTGGA 58.797 41.667 0.00 0.00 0.00 4.02
687 708 6.099269 ACCAATGACTAGTATTACGGGAATGT 59.901 38.462 0.00 0.00 0.00 2.71
688 709 6.522054 ACCAATGACTAGTATTACGGGAATG 58.478 40.000 0.00 0.00 0.00 2.67
689 710 6.742559 ACCAATGACTAGTATTACGGGAAT 57.257 37.500 0.00 0.00 0.00 3.01
690 711 6.549433 AACCAATGACTAGTATTACGGGAA 57.451 37.500 0.00 0.00 0.00 3.97
691 712 6.835488 AGTAACCAATGACTAGTATTACGGGA 59.165 38.462 0.00 0.00 0.00 5.14
692 713 6.921857 CAGTAACCAATGACTAGTATTACGGG 59.078 42.308 0.00 0.00 0.00 5.28
693 714 7.709947 TCAGTAACCAATGACTAGTATTACGG 58.290 38.462 0.00 0.00 0.00 4.02
700 721 8.361139 GCTGTATATCAGTAACCAATGACTAGT 58.639 37.037 0.00 0.00 45.23 2.57
703 724 7.069950 TCAGCTGTATATCAGTAACCAATGACT 59.930 37.037 14.67 0.00 45.23 3.41
724 746 1.220206 CTCCAATGCGACCTCAGCT 59.780 57.895 0.00 0.00 35.28 4.24
774 796 1.089112 CATGGCGAGCACAATCTCAA 58.911 50.000 0.00 0.00 33.41 3.02
814 836 1.277842 TGGTAGGTAGCATGTGTGTGG 59.722 52.381 0.00 0.00 0.00 4.17
826 848 4.283978 TGTTTCTTGAACCGATGGTAGGTA 59.716 41.667 0.00 0.00 41.95 3.08
971 998 6.095021 TGCTAGCTCTCGAAACTAATACTGAA 59.905 38.462 17.23 0.00 0.00 3.02
1006 1055 4.338400 GGTGGCAAACTTCTTTTCACTACT 59.662 41.667 0.00 0.00 0.00 2.57
1129 1211 1.005924 AGTATTCTTGGCCTTGGGGTG 59.994 52.381 3.32 0.00 34.45 4.61
1173 1255 6.727231 TCACCTCCTCCTTTACAATGTTACTA 59.273 38.462 0.00 0.00 0.00 1.82
1296 1380 1.071857 ACATGCATGCCAGAGATCGAT 59.928 47.619 26.53 0.00 0.00 3.59
1605 1785 1.364901 GAGGGACACGTTTCCGTCA 59.635 57.895 29.34 0.00 46.28 4.35
1611 1791 1.080025 GCTAGCGAGGGACACGTTT 60.080 57.895 0.00 0.00 45.83 3.60
1791 1971 1.271840 CCATGGGGTCCGAAGAAGGA 61.272 60.000 2.85 0.00 38.11 3.36
1845 2025 2.357881 TCGCCTCTGCTGCACTTG 60.358 61.111 0.00 0.00 34.43 3.16
1932 2112 6.638610 TGATTTCAACAACACTTCATGGTTT 58.361 32.000 0.00 0.00 0.00 3.27
1975 2155 4.014569 TCACGGATTCAATTGTCTTGGA 57.985 40.909 5.13 0.00 0.00 3.53
2011 2191 7.817418 ACTTTAGCTTCCAGTCTATAGAGAG 57.183 40.000 1.64 0.00 30.20 3.20
2017 2197 4.141914 CCCGAACTTTAGCTTCCAGTCTAT 60.142 45.833 0.00 0.00 0.00 1.98
2026 2206 1.613520 GGCTTCCCCGAACTTTAGCTT 60.614 52.381 0.00 0.00 0.00 3.74
2091 2271 1.067283 CGGCACTTGTGTCTGATCTCT 60.067 52.381 3.84 0.00 0.00 3.10
2135 2315 2.818432 TCTGGTCGGTTTCTAGTCACTC 59.182 50.000 0.00 0.00 0.00 3.51
2295 2491 5.413833 AGCCATGCCGATTAATCTCATTAAG 59.586 40.000 13.45 8.45 38.05 1.85
2335 2531 2.423577 CCTTACCGGGAAAAGTGACAG 58.576 52.381 6.32 0.00 0.00 3.51
2336 2532 1.543871 GCCTTACCGGGAAAAGTGACA 60.544 52.381 6.32 0.00 0.00 3.58
2371 4931 1.153745 GCAGAAGCGGATGTCGAGT 60.154 57.895 0.00 0.00 42.43 4.18
2404 4964 2.028125 TTATGCCGGGAAGAGCCGAG 62.028 60.000 0.00 0.00 37.63 4.63
2413 4973 4.766375 CTCTTTCTAAGTTTATGCCGGGA 58.234 43.478 2.18 0.00 0.00 5.14
2416 4976 5.065218 ACATGCTCTTTCTAAGTTTATGCCG 59.935 40.000 0.00 0.00 0.00 5.69
2417 4977 6.442513 ACATGCTCTTTCTAAGTTTATGCC 57.557 37.500 0.00 0.00 0.00 4.40
2448 5008 6.204108 GGTTGGATGTAGGAATATTACAACCG 59.796 42.308 0.00 0.00 43.21 4.44
2449 5009 7.506328 GGTTGGATGTAGGAATATTACAACC 57.494 40.000 0.00 0.00 45.51 3.77
2450 5010 7.255139 GCAGGTTGGATGTAGGAATATTACAAC 60.255 40.741 0.00 0.00 34.92 3.32
2451 5011 6.770785 GCAGGTTGGATGTAGGAATATTACAA 59.229 38.462 0.00 0.00 34.92 2.41
2452 5012 6.296026 GCAGGTTGGATGTAGGAATATTACA 58.704 40.000 0.00 0.00 35.66 2.41
2453 5013 5.705905 GGCAGGTTGGATGTAGGAATATTAC 59.294 44.000 0.00 0.00 0.00 1.89
2454 5014 5.371176 TGGCAGGTTGGATGTAGGAATATTA 59.629 40.000 0.00 0.00 0.00 0.98
2455 5015 4.167892 TGGCAGGTTGGATGTAGGAATATT 59.832 41.667 0.00 0.00 0.00 1.28
2456 5016 3.721575 TGGCAGGTTGGATGTAGGAATAT 59.278 43.478 0.00 0.00 0.00 1.28
2457 5017 3.119319 TGGCAGGTTGGATGTAGGAATA 58.881 45.455 0.00 0.00 0.00 1.75
2458 5018 1.922447 TGGCAGGTTGGATGTAGGAAT 59.078 47.619 0.00 0.00 0.00 3.01
2459 5019 1.367346 TGGCAGGTTGGATGTAGGAA 58.633 50.000 0.00 0.00 0.00 3.36
2460 5020 1.281867 CTTGGCAGGTTGGATGTAGGA 59.718 52.381 0.00 0.00 0.00 2.94
2461 5021 1.755179 CTTGGCAGGTTGGATGTAGG 58.245 55.000 0.00 0.00 0.00 3.18
2462 5022 1.098050 GCTTGGCAGGTTGGATGTAG 58.902 55.000 0.00 0.00 0.00 2.74
2463 5023 0.676466 CGCTTGGCAGGTTGGATGTA 60.676 55.000 0.00 0.00 0.00 2.29
2464 5024 1.973281 CGCTTGGCAGGTTGGATGT 60.973 57.895 0.00 0.00 0.00 3.06
2465 5025 1.033746 ATCGCTTGGCAGGTTGGATG 61.034 55.000 0.00 0.00 0.00 3.51
2466 5026 0.323725 AATCGCTTGGCAGGTTGGAT 60.324 50.000 0.00 0.00 0.00 3.41
2467 5027 0.539438 AAATCGCTTGGCAGGTTGGA 60.539 50.000 0.00 0.00 0.00 3.53
2468 5028 0.318120 AAAATCGCTTGGCAGGTTGG 59.682 50.000 0.00 0.00 0.00 3.77
2469 5029 1.269726 ACAAAATCGCTTGGCAGGTTG 60.270 47.619 0.00 0.00 0.00 3.77
2470 5030 1.039856 ACAAAATCGCTTGGCAGGTT 58.960 45.000 0.00 0.00 0.00 3.50
2471 5031 0.314935 CACAAAATCGCTTGGCAGGT 59.685 50.000 0.00 0.00 0.00 4.00
2472 5032 1.010419 GCACAAAATCGCTTGGCAGG 61.010 55.000 0.00 0.00 0.00 4.85
2473 5033 0.318869 TGCACAAAATCGCTTGGCAG 60.319 50.000 0.00 0.00 32.39 4.85
2474 5034 0.317799 ATGCACAAAATCGCTTGGCA 59.682 45.000 0.00 0.00 37.10 4.92
2475 5035 0.717224 CATGCACAAAATCGCTTGGC 59.283 50.000 0.00 0.00 31.57 4.52
2476 5036 2.068837 ACATGCACAAAATCGCTTGG 57.931 45.000 0.00 0.00 37.55 3.61
2477 5037 2.796031 ACAACATGCACAAAATCGCTTG 59.204 40.909 0.00 0.00 38.76 4.01
2478 5038 2.796031 CACAACATGCACAAAATCGCTT 59.204 40.909 0.00 0.00 0.00 4.68
2479 5039 2.034432 TCACAACATGCACAAAATCGCT 59.966 40.909 0.00 0.00 0.00 4.93
2480 5040 2.153627 GTCACAACATGCACAAAATCGC 59.846 45.455 0.00 0.00 0.00 4.58
2481 5041 3.370276 TGTCACAACATGCACAAAATCG 58.630 40.909 0.00 0.00 0.00 3.34
2482 5042 4.362279 ACTGTCACAACATGCACAAAATC 58.638 39.130 0.00 0.00 34.13 2.17
2483 5043 4.142204 TGACTGTCACAACATGCACAAAAT 60.142 37.500 6.36 0.00 34.13 1.82
2484 5044 3.192212 TGACTGTCACAACATGCACAAAA 59.808 39.130 6.36 0.00 34.13 2.44
2485 5045 2.751806 TGACTGTCACAACATGCACAAA 59.248 40.909 6.36 0.00 34.13 2.83
2486 5046 2.355444 CTGACTGTCACAACATGCACAA 59.645 45.455 6.36 0.00 34.13 3.33
2487 5047 1.941975 CTGACTGTCACAACATGCACA 59.058 47.619 6.36 0.00 34.13 4.57
2488 5048 2.032549 GTCTGACTGTCACAACATGCAC 60.033 50.000 6.36 0.00 34.13 4.57
2489 5049 2.158914 AGTCTGACTGTCACAACATGCA 60.159 45.455 10.00 0.00 34.13 3.96
2490 5050 2.487934 AGTCTGACTGTCACAACATGC 58.512 47.619 10.00 0.00 34.13 4.06
2491 5051 3.183172 CGAAGTCTGACTGTCACAACATG 59.817 47.826 11.71 0.00 34.13 3.21
2492 5052 3.384668 CGAAGTCTGACTGTCACAACAT 58.615 45.455 11.71 1.43 34.13 2.71
2493 5053 2.481276 CCGAAGTCTGACTGTCACAACA 60.481 50.000 11.71 0.00 0.00 3.33
2494 5054 2.128035 CCGAAGTCTGACTGTCACAAC 58.872 52.381 11.71 8.27 0.00 3.32
2495 5055 1.538204 GCCGAAGTCTGACTGTCACAA 60.538 52.381 11.71 0.00 0.00 3.33
2496 5056 0.032130 GCCGAAGTCTGACTGTCACA 59.968 55.000 11.71 0.00 0.00 3.58
2497 5057 0.315568 AGCCGAAGTCTGACTGTCAC 59.684 55.000 11.71 2.27 0.00 3.67
2498 5058 1.540267 GTAGCCGAAGTCTGACTGTCA 59.460 52.381 11.71 10.50 0.00 3.58
2499 5059 1.540267 TGTAGCCGAAGTCTGACTGTC 59.460 52.381 11.71 9.91 0.00 3.51
2500 5060 1.269998 GTGTAGCCGAAGTCTGACTGT 59.730 52.381 11.71 1.70 0.00 3.55
2501 5061 1.402984 GGTGTAGCCGAAGTCTGACTG 60.403 57.143 11.71 0.00 0.00 3.51
2502 5062 0.889306 GGTGTAGCCGAAGTCTGACT 59.111 55.000 4.06 4.06 0.00 3.41
2503 5063 0.108756 GGGTGTAGCCGAAGTCTGAC 60.109 60.000 0.00 0.00 38.44 3.51
2504 5064 0.541063 TGGGTGTAGCCGAAGTCTGA 60.541 55.000 0.00 0.00 38.44 3.27
2505 5065 0.537188 ATGGGTGTAGCCGAAGTCTG 59.463 55.000 0.00 0.00 38.44 3.51
2506 5066 0.824759 GATGGGTGTAGCCGAAGTCT 59.175 55.000 0.00 0.00 38.44 3.24
2507 5067 0.824759 AGATGGGTGTAGCCGAAGTC 59.175 55.000 0.00 0.00 38.44 3.01
2508 5068 0.537188 CAGATGGGTGTAGCCGAAGT 59.463 55.000 0.00 0.00 38.44 3.01
2509 5069 0.824109 TCAGATGGGTGTAGCCGAAG 59.176 55.000 0.00 0.00 38.44 3.79
2510 5070 0.824109 CTCAGATGGGTGTAGCCGAA 59.176 55.000 0.00 0.00 38.44 4.30
2511 5071 1.043116 CCTCAGATGGGTGTAGCCGA 61.043 60.000 0.00 0.00 38.44 5.54
2512 5072 1.330655 ACCTCAGATGGGTGTAGCCG 61.331 60.000 0.00 0.00 38.44 5.52
2513 5073 1.413077 GTACCTCAGATGGGTGTAGCC 59.587 57.143 0.00 0.00 37.65 3.93
2514 5074 2.389715 AGTACCTCAGATGGGTGTAGC 58.610 52.381 0.00 0.00 37.65 3.58
2515 5075 5.163437 GGTTAAGTACCTCAGATGGGTGTAG 60.163 48.000 0.00 0.00 44.10 2.74
2516 5076 4.713321 GGTTAAGTACCTCAGATGGGTGTA 59.287 45.833 0.00 0.00 44.10 2.90
2517 5077 3.518303 GGTTAAGTACCTCAGATGGGTGT 59.482 47.826 0.00 0.00 44.10 4.16
2518 5078 3.430374 CGGTTAAGTACCTCAGATGGGTG 60.430 52.174 0.00 0.00 45.40 4.61
2519 5079 2.764572 CGGTTAAGTACCTCAGATGGGT 59.235 50.000 0.00 0.00 45.40 4.51
2520 5080 3.028850 TCGGTTAAGTACCTCAGATGGG 58.971 50.000 0.00 0.00 45.40 4.00
2521 5081 4.939052 ATCGGTTAAGTACCTCAGATGG 57.061 45.455 0.00 0.00 45.40 3.51
2522 5082 8.712285 TTTAAATCGGTTAAGTACCTCAGATG 57.288 34.615 0.00 0.00 45.40 2.90
2523 5083 9.901172 AATTTAAATCGGTTAAGTACCTCAGAT 57.099 29.630 0.10 0.00 45.40 2.90
2546 5106 9.959721 ACACCTATGTGATTGTTACTTCTAATT 57.040 29.630 5.05 0.00 45.76 1.40
2547 5107 9.959721 AACACCTATGTGATTGTTACTTCTAAT 57.040 29.630 5.05 0.00 45.76 1.73
2548 5108 9.431887 GAACACCTATGTGATTGTTACTTCTAA 57.568 33.333 5.05 0.00 45.76 2.10
2549 5109 8.038944 GGAACACCTATGTGATTGTTACTTCTA 58.961 37.037 5.05 0.00 45.76 2.10
2550 5110 6.879458 GGAACACCTATGTGATTGTTACTTCT 59.121 38.462 5.05 0.00 45.76 2.85
2551 5111 6.183360 CGGAACACCTATGTGATTGTTACTTC 60.183 42.308 5.05 0.00 45.76 3.01
2552 5112 5.642063 CGGAACACCTATGTGATTGTTACTT 59.358 40.000 5.05 0.00 45.76 2.24
2553 5113 5.175859 CGGAACACCTATGTGATTGTTACT 58.824 41.667 5.05 0.00 45.76 2.24
2554 5114 4.331717 CCGGAACACCTATGTGATTGTTAC 59.668 45.833 0.00 0.00 45.76 2.50
2555 5115 4.509616 CCGGAACACCTATGTGATTGTTA 58.490 43.478 0.00 0.00 45.76 2.41
2556 5116 3.343617 CCGGAACACCTATGTGATTGTT 58.656 45.455 0.00 0.00 45.76 2.83
2557 5117 2.939640 GCCGGAACACCTATGTGATTGT 60.940 50.000 5.05 0.00 45.76 2.71
2558 5118 1.670811 GCCGGAACACCTATGTGATTG 59.329 52.381 5.05 0.00 45.76 2.67
2559 5119 1.280710 TGCCGGAACACCTATGTGATT 59.719 47.619 5.05 0.00 45.76 2.57
2560 5120 0.908910 TGCCGGAACACCTATGTGAT 59.091 50.000 5.05 0.00 45.76 3.06
2561 5121 0.036765 GTGCCGGAACACCTATGTGA 60.037 55.000 8.05 0.00 45.76 3.58
2563 5123 0.249398 GAGTGCCGGAACACCTATGT 59.751 55.000 16.99 0.00 41.67 2.29
2564 5124 0.462047 GGAGTGCCGGAACACCTATG 60.462 60.000 21.18 0.00 41.67 2.23
2565 5125 1.623542 GGGAGTGCCGGAACACCTAT 61.624 60.000 26.34 0.00 41.67 2.57
2566 5126 2.288025 GGGAGTGCCGGAACACCTA 61.288 63.158 26.34 0.00 41.67 3.08
2567 5127 3.637273 GGGAGTGCCGGAACACCT 61.637 66.667 26.34 0.00 41.67 4.00
2568 5128 3.607370 GAGGGAGTGCCGGAACACC 62.607 68.421 20.39 20.39 41.67 4.16
2569 5129 2.047179 GAGGGAGTGCCGGAACAC 60.047 66.667 16.99 8.75 41.02 3.32
2570 5130 2.525629 TGAGGGAGTGCCGGAACA 60.526 61.111 16.99 0.00 33.83 3.18
2571 5131 2.266055 CTGAGGGAGTGCCGGAAC 59.734 66.667 5.05 4.25 33.83 3.62
2572 5132 3.706373 GCTGAGGGAGTGCCGGAA 61.706 66.667 5.05 0.00 33.83 4.30
2576 5136 3.706373 TTCGGCTGAGGGAGTGCC 61.706 66.667 0.00 0.00 42.94 5.01
2577 5137 2.435059 GTTCGGCTGAGGGAGTGC 60.435 66.667 0.00 0.00 0.00 4.40
2578 5138 0.036010 ATTGTTCGGCTGAGGGAGTG 60.036 55.000 0.00 0.00 0.00 3.51
2579 5139 1.207329 GTATTGTTCGGCTGAGGGAGT 59.793 52.381 0.00 0.00 0.00 3.85
2580 5140 1.802880 CGTATTGTTCGGCTGAGGGAG 60.803 57.143 0.00 0.00 0.00 4.30
2581 5141 0.174845 CGTATTGTTCGGCTGAGGGA 59.825 55.000 0.00 0.00 0.00 4.20
2582 5142 0.810031 CCGTATTGTTCGGCTGAGGG 60.810 60.000 0.00 0.00 41.48 4.30
2583 5143 0.174845 TCCGTATTGTTCGGCTGAGG 59.825 55.000 0.00 0.00 46.49 3.86
2584 5144 1.278238 GTCCGTATTGTTCGGCTGAG 58.722 55.000 0.00 0.00 46.49 3.35
2585 5145 0.604073 TGTCCGTATTGTTCGGCTGA 59.396 50.000 0.00 0.00 46.49 4.26
2586 5146 1.651987 ATGTCCGTATTGTTCGGCTG 58.348 50.000 0.00 0.00 46.49 4.85
2587 5147 3.530265 TTATGTCCGTATTGTTCGGCT 57.470 42.857 0.00 0.00 46.49 5.52
2588 5148 3.001939 CCTTTATGTCCGTATTGTTCGGC 59.998 47.826 0.00 0.00 46.49 5.54
2590 5150 3.558418 CCCCTTTATGTCCGTATTGTTCG 59.442 47.826 0.00 0.00 0.00 3.95
2591 5151 4.520179 ACCCCTTTATGTCCGTATTGTTC 58.480 43.478 0.00 0.00 0.00 3.18
2592 5152 4.579647 ACCCCTTTATGTCCGTATTGTT 57.420 40.909 0.00 0.00 0.00 2.83
2593 5153 5.697082 TTACCCCTTTATGTCCGTATTGT 57.303 39.130 0.00 0.00 0.00 2.71
2594 5154 5.881443 TGTTTACCCCTTTATGTCCGTATTG 59.119 40.000 0.00 0.00 0.00 1.90
2595 5155 6.064735 TGTTTACCCCTTTATGTCCGTATT 57.935 37.500 0.00 0.00 0.00 1.89
2596 5156 5.697082 TGTTTACCCCTTTATGTCCGTAT 57.303 39.130 0.00 0.00 0.00 3.06
2597 5157 5.697082 ATGTTTACCCCTTTATGTCCGTA 57.303 39.130 0.00 0.00 0.00 4.02
2598 5158 4.579647 ATGTTTACCCCTTTATGTCCGT 57.420 40.909 0.00 0.00 0.00 4.69
2599 5159 5.061179 CCTATGTTTACCCCTTTATGTCCG 58.939 45.833 0.00 0.00 0.00 4.79
2600 5160 6.256643 TCCTATGTTTACCCCTTTATGTCC 57.743 41.667 0.00 0.00 0.00 4.02
2601 5161 5.763698 GCTCCTATGTTTACCCCTTTATGTC 59.236 44.000 0.00 0.00 0.00 3.06
2602 5162 5.398695 GGCTCCTATGTTTACCCCTTTATGT 60.399 44.000 0.00 0.00 0.00 2.29
2603 5163 5.070685 GGCTCCTATGTTTACCCCTTTATG 58.929 45.833 0.00 0.00 0.00 1.90
2604 5164 4.729881 TGGCTCCTATGTTTACCCCTTTAT 59.270 41.667 0.00 0.00 0.00 1.40
2605 5165 4.113085 TGGCTCCTATGTTTACCCCTTTA 58.887 43.478 0.00 0.00 0.00 1.85
2606 5166 2.923629 TGGCTCCTATGTTTACCCCTTT 59.076 45.455 0.00 0.00 0.00 3.11
2607 5167 2.509964 CTGGCTCCTATGTTTACCCCTT 59.490 50.000 0.00 0.00 0.00 3.95
2608 5168 2.127708 CTGGCTCCTATGTTTACCCCT 58.872 52.381 0.00 0.00 0.00 4.79
2609 5169 1.143073 CCTGGCTCCTATGTTTACCCC 59.857 57.143 0.00 0.00 0.00 4.95
2610 5170 1.477014 GCCTGGCTCCTATGTTTACCC 60.477 57.143 12.43 0.00 0.00 3.69
2611 5171 1.211949 TGCCTGGCTCCTATGTTTACC 59.788 52.381 21.03 0.00 0.00 2.85
2612 5172 2.683362 GTTGCCTGGCTCCTATGTTTAC 59.317 50.000 21.03 0.00 0.00 2.01
2613 5173 2.356741 GGTTGCCTGGCTCCTATGTTTA 60.357 50.000 21.03 0.00 0.00 2.01
2614 5174 1.616994 GGTTGCCTGGCTCCTATGTTT 60.617 52.381 21.03 0.00 0.00 2.83
2615 5175 0.034089 GGTTGCCTGGCTCCTATGTT 60.034 55.000 21.03 0.00 0.00 2.71
2616 5176 0.916358 AGGTTGCCTGGCTCCTATGT 60.916 55.000 25.90 9.61 33.74 2.29
2617 5177 1.131638 TAGGTTGCCTGGCTCCTATG 58.868 55.000 26.79 0.00 35.91 2.23
2618 5178 2.107204 CAATAGGTTGCCTGGCTCCTAT 59.893 50.000 30.97 30.97 42.70 2.57
2619 5179 1.490490 CAATAGGTTGCCTGGCTCCTA 59.510 52.381 29.93 29.93 38.89 2.94
2620 5180 0.257039 CAATAGGTTGCCTGGCTCCT 59.743 55.000 28.33 28.33 37.37 3.69
2621 5181 0.255890 TCAATAGGTTGCCTGGCTCC 59.744 55.000 21.03 20.52 34.61 4.70
2622 5182 1.673168 CTCAATAGGTTGCCTGGCTC 58.327 55.000 21.03 12.58 34.61 4.70
2623 5183 0.394899 GCTCAATAGGTTGCCTGGCT 60.395 55.000 21.03 1.26 34.61 4.75
2624 5184 1.387295 GGCTCAATAGGTTGCCTGGC 61.387 60.000 12.87 12.87 41.92 4.85
2625 5185 0.034186 TGGCTCAATAGGTTGCCTGG 60.034 55.000 0.00 0.00 45.11 4.45
2626 5186 1.386533 CTGGCTCAATAGGTTGCCTG 58.613 55.000 0.00 0.00 45.11 4.85
2627 5187 0.257039 CCTGGCTCAATAGGTTGCCT 59.743 55.000 0.00 0.00 45.11 4.75
2628 5188 0.255890 TCCTGGCTCAATAGGTTGCC 59.744 55.000 0.00 0.00 45.10 4.52
2629 5189 1.340017 TGTCCTGGCTCAATAGGTTGC 60.340 52.381 0.00 0.00 35.26 4.17
2630 5190 2.290260 TGTGTCCTGGCTCAATAGGTTG 60.290 50.000 0.00 0.00 35.54 3.77
2631 5191 1.985159 TGTGTCCTGGCTCAATAGGTT 59.015 47.619 0.00 0.00 35.54 3.50
2632 5192 1.656587 TGTGTCCTGGCTCAATAGGT 58.343 50.000 0.00 0.00 35.54 3.08
2633 5193 2.026822 ACTTGTGTCCTGGCTCAATAGG 60.027 50.000 0.00 0.00 35.34 2.57
2634 5194 3.265791 GACTTGTGTCCTGGCTCAATAG 58.734 50.000 0.00 0.00 37.24 1.73
2635 5195 2.353704 CGACTTGTGTCCTGGCTCAATA 60.354 50.000 0.00 0.00 39.94 1.90
2636 5196 1.609061 CGACTTGTGTCCTGGCTCAAT 60.609 52.381 0.00 0.00 39.94 2.57
2637 5197 0.249868 CGACTTGTGTCCTGGCTCAA 60.250 55.000 0.00 0.00 39.94 3.02
2638 5198 1.112916 TCGACTTGTGTCCTGGCTCA 61.113 55.000 0.00 0.00 39.94 4.26
2639 5199 0.033504 TTCGACTTGTGTCCTGGCTC 59.966 55.000 0.00 0.00 39.94 4.70
2640 5200 0.468226 TTTCGACTTGTGTCCTGGCT 59.532 50.000 0.00 0.00 39.94 4.75
2641 5201 1.464997 GATTTCGACTTGTGTCCTGGC 59.535 52.381 0.00 0.00 39.94 4.85
2642 5202 1.726791 CGATTTCGACTTGTGTCCTGG 59.273 52.381 0.00 0.00 43.02 4.45
2643 5203 2.672714 TCGATTTCGACTTGTGTCCTG 58.327 47.619 0.00 0.00 44.22 3.86
2655 5215 4.201714 ACGCCATTATATGCATCGATTTCG 60.202 41.667 0.19 3.02 41.45 3.46
2656 5216 5.221891 ACGCCATTATATGCATCGATTTC 57.778 39.130 0.19 0.00 0.00 2.17
2657 5217 6.183360 CCTTACGCCATTATATGCATCGATTT 60.183 38.462 0.19 0.00 0.00 2.17
2658 5218 5.294306 CCTTACGCCATTATATGCATCGATT 59.706 40.000 0.19 0.00 0.00 3.34
2659 5219 4.811024 CCTTACGCCATTATATGCATCGAT 59.189 41.667 0.19 0.00 0.00 3.59
2660 5220 4.180817 CCTTACGCCATTATATGCATCGA 58.819 43.478 0.19 0.00 0.00 3.59
2661 5221 3.932710 ACCTTACGCCATTATATGCATCG 59.067 43.478 0.19 0.50 0.00 3.84
2662 5222 4.332819 GGACCTTACGCCATTATATGCATC 59.667 45.833 0.19 0.00 0.00 3.91
2663 5223 4.261801 GGACCTTACGCCATTATATGCAT 58.738 43.478 3.79 3.79 0.00 3.96
2664 5224 3.670625 GGACCTTACGCCATTATATGCA 58.329 45.455 0.00 0.00 0.00 3.96
2665 5225 2.671396 CGGACCTTACGCCATTATATGC 59.329 50.000 0.00 0.00 0.00 3.14
2666 5226 4.174009 CTCGGACCTTACGCCATTATATG 58.826 47.826 0.00 0.00 0.00 1.78
2667 5227 3.194968 CCTCGGACCTTACGCCATTATAT 59.805 47.826 0.00 0.00 0.00 0.86
2668 5228 2.559668 CCTCGGACCTTACGCCATTATA 59.440 50.000 0.00 0.00 0.00 0.98
2669 5229 1.343465 CCTCGGACCTTACGCCATTAT 59.657 52.381 0.00 0.00 0.00 1.28
2670 5230 0.748450 CCTCGGACCTTACGCCATTA 59.252 55.000 0.00 0.00 0.00 1.90
2671 5231 0.974010 TCCTCGGACCTTACGCCATT 60.974 55.000 0.00 0.00 0.00 3.16
2672 5232 0.974010 TTCCTCGGACCTTACGCCAT 60.974 55.000 0.00 0.00 0.00 4.40
2673 5233 1.601419 CTTCCTCGGACCTTACGCCA 61.601 60.000 0.00 0.00 0.00 5.69
2674 5234 1.141234 CTTCCTCGGACCTTACGCC 59.859 63.158 0.00 0.00 0.00 5.68
2675 5235 0.179142 GACTTCCTCGGACCTTACGC 60.179 60.000 0.00 0.00 0.00 4.42
2676 5236 1.171308 TGACTTCCTCGGACCTTACG 58.829 55.000 0.00 0.00 0.00 3.18
2677 5237 2.223525 CGATGACTTCCTCGGACCTTAC 60.224 54.545 0.00 0.00 0.00 2.34
2678 5238 2.022195 CGATGACTTCCTCGGACCTTA 58.978 52.381 0.00 0.00 0.00 2.69
2679 5239 0.818296 CGATGACTTCCTCGGACCTT 59.182 55.000 0.00 0.00 0.00 3.50
2680 5240 2.494677 CGATGACTTCCTCGGACCT 58.505 57.895 0.00 0.00 0.00 3.85
2685 5245 2.278857 CCGCCGATGACTTCCTCG 60.279 66.667 0.00 0.00 34.73 4.63
2686 5246 2.586357 GCCGCCGATGACTTCCTC 60.586 66.667 0.00 0.00 0.00 3.71
2687 5247 3.077556 AGCCGCCGATGACTTCCT 61.078 61.111 0.00 0.00 0.00 3.36
2688 5248 2.586357 GAGCCGCCGATGACTTCC 60.586 66.667 0.00 0.00 0.00 3.46
2689 5249 2.586357 GGAGCCGCCGATGACTTC 60.586 66.667 0.00 0.00 0.00 3.01
2690 5250 3.390521 TGGAGCCGCCGATGACTT 61.391 61.111 0.00 0.00 40.66 3.01
2691 5251 4.148825 GTGGAGCCGCCGATGACT 62.149 66.667 0.00 0.00 40.66 3.41
2700 5260 2.943978 AAGGTTCTCCGTGGAGCCG 61.944 63.158 11.17 0.00 40.73 5.52
2701 5261 1.376037 CAAGGTTCTCCGTGGAGCC 60.376 63.158 11.17 7.66 41.71 4.70
2702 5262 0.250513 ATCAAGGTTCTCCGTGGAGC 59.749 55.000 11.17 0.00 42.12 4.70
2703 5263 2.009042 GCATCAAGGTTCTCCGTGGAG 61.009 57.143 9.73 9.73 42.12 3.86
2704 5264 0.036388 GCATCAAGGTTCTCCGTGGA 60.036 55.000 1.03 0.00 42.12 4.02
2705 5265 0.036010 AGCATCAAGGTTCTCCGTGG 60.036 55.000 1.03 0.00 42.12 4.94
2706 5266 1.813513 AAGCATCAAGGTTCTCCGTG 58.186 50.000 0.00 0.00 42.96 4.94
2707 5267 2.568623 AAAGCATCAAGGTTCTCCGT 57.431 45.000 0.00 0.00 36.83 4.69
2708 5268 3.923017 AAAAAGCATCAAGGTTCTCCG 57.077 42.857 0.00 0.00 36.83 4.63
2731 5291 1.774856 AGGGCTACAAAGACAACCAGT 59.225 47.619 0.00 0.00 29.10 4.00
2732 5292 2.427506 GAGGGCTACAAAGACAACCAG 58.572 52.381 0.00 0.00 29.10 4.00
2733 5293 1.270625 CGAGGGCTACAAAGACAACCA 60.271 52.381 0.00 0.00 29.10 3.67
2735 5295 2.288886 ACTCGAGGGCTACAAAGACAAC 60.289 50.000 18.41 0.00 29.10 3.32
2736 5296 1.968493 ACTCGAGGGCTACAAAGACAA 59.032 47.619 18.41 0.00 29.10 3.18
2742 5302 1.471119 CAGGTACTCGAGGGCTACAA 58.529 55.000 18.41 0.00 34.60 2.41
2745 5305 0.106167 ATGCAGGTACTCGAGGGCTA 60.106 55.000 18.41 0.00 34.60 3.93
2751 5311 1.153647 CGCCAATGCAGGTACTCGA 60.154 57.895 0.00 0.00 34.60 4.04
2763 5323 1.132262 CGGACATTGTTAAGCGCCAAT 59.868 47.619 2.29 3.41 0.00 3.16
2776 5336 2.486951 CGAATACCTCGTCGGACATT 57.513 50.000 9.10 0.00 42.89 2.71
2833 5393 6.118170 TCATGGTGAATCCTTTCTCTCATTC 58.882 40.000 0.00 0.00 37.07 2.67
2864 5424 0.869880 GAAACACCCACAGTTTGCGC 60.870 55.000 0.00 0.00 39.15 6.09
2903 5468 3.150767 AGCTAGATATTTCGGCTCGACT 58.849 45.455 0.00 0.00 34.89 4.18
2911 5476 8.182227 TGTATCCATCGTTAGCTAGATATTTCG 58.818 37.037 0.00 0.00 0.00 3.46
2916 5481 6.603599 AGCATGTATCCATCGTTAGCTAGATA 59.396 38.462 0.00 0.00 0.00 1.98
2957 5522 0.174845 GTTCGGACCCATCACGATGA 59.825 55.000 8.62 0.00 41.20 2.92
2959 5524 0.902531 AAGTTCGGACCCATCACGAT 59.097 50.000 0.00 0.00 36.43 3.73
2961 5526 0.739813 GGAAGTTCGGACCCATCACG 60.740 60.000 0.00 0.00 0.00 4.35
2972 5537 4.243270 AGAATCTAACAACCGGAAGTTCG 58.757 43.478 9.46 8.67 36.18 3.95
2973 5538 5.781452 GAGAATCTAACAACCGGAAGTTC 57.219 43.478 9.46 0.00 36.18 3.01
2989 5554 2.630580 AGCCTAACCGATCCAGAGAATC 59.369 50.000 0.00 0.00 0.00 2.52
2990 5555 2.683768 AGCCTAACCGATCCAGAGAAT 58.316 47.619 0.00 0.00 0.00 2.40
2991 5556 2.160721 AGCCTAACCGATCCAGAGAA 57.839 50.000 0.00 0.00 0.00 2.87
2992 5557 2.442126 TCTAGCCTAACCGATCCAGAGA 59.558 50.000 0.00 0.00 0.00 3.10
2993 5558 2.865079 TCTAGCCTAACCGATCCAGAG 58.135 52.381 0.00 0.00 0.00 3.35
2994 5559 3.181433 TGATCTAGCCTAACCGATCCAGA 60.181 47.826 0.00 0.00 33.15 3.86
2995 5560 3.157881 TGATCTAGCCTAACCGATCCAG 58.842 50.000 0.00 0.00 33.15 3.86
2996 5561 3.238788 TGATCTAGCCTAACCGATCCA 57.761 47.619 0.00 0.00 33.15 3.41
2997 5562 4.382147 GGATTGATCTAGCCTAACCGATCC 60.382 50.000 4.07 0.00 33.15 3.36
2998 5563 4.675671 CGGATTGATCTAGCCTAACCGATC 60.676 50.000 9.73 0.00 40.16 3.69
2999 5564 3.193691 CGGATTGATCTAGCCTAACCGAT 59.806 47.826 9.73 0.00 40.16 4.18
3000 5565 2.557056 CGGATTGATCTAGCCTAACCGA 59.443 50.000 9.73 0.00 40.16 4.69
3001 5566 2.352814 CCGGATTGATCTAGCCTAACCG 60.353 54.545 9.73 0.00 37.98 4.44
3002 5567 2.633481 ACCGGATTGATCTAGCCTAACC 59.367 50.000 9.46 0.00 0.00 2.85
3003 5568 5.464030 TTACCGGATTGATCTAGCCTAAC 57.536 43.478 9.46 0.00 0.00 2.34
3004 5569 5.187186 GGATTACCGGATTGATCTAGCCTAA 59.813 44.000 9.46 3.22 0.00 2.69
3005 5570 4.710375 GGATTACCGGATTGATCTAGCCTA 59.290 45.833 9.46 0.00 0.00 3.93
3006 5571 3.515901 GGATTACCGGATTGATCTAGCCT 59.484 47.826 9.46 0.00 0.00 4.58
3007 5572 3.515901 AGGATTACCGGATTGATCTAGCC 59.484 47.826 9.46 0.93 41.83 3.93
3008 5573 4.810191 AGGATTACCGGATTGATCTAGC 57.190 45.455 9.46 0.00 41.83 3.42
3009 5574 6.210287 GGTAGGATTACCGGATTGATCTAG 57.790 45.833 9.46 0.00 40.02 2.43
3022 5587 4.038633 ACCCAAGGAGAAGGTAGGATTAC 58.961 47.826 0.00 0.00 30.13 1.89
3023 5588 4.363546 ACCCAAGGAGAAGGTAGGATTA 57.636 45.455 0.00 0.00 30.13 1.75
3024 5589 3.222394 ACCCAAGGAGAAGGTAGGATT 57.778 47.619 0.00 0.00 30.13 3.01
3025 5590 2.846827 CAACCCAAGGAGAAGGTAGGAT 59.153 50.000 0.00 0.00 32.21 3.24
3026 5591 2.158066 TCAACCCAAGGAGAAGGTAGGA 60.158 50.000 0.00 0.00 32.21 2.94
3027 5592 2.266279 TCAACCCAAGGAGAAGGTAGG 58.734 52.381 0.00 0.00 32.21 3.18
3028 5593 3.519510 TCATCAACCCAAGGAGAAGGTAG 59.480 47.826 0.00 0.00 32.21 3.18
3029 5594 3.526899 TCATCAACCCAAGGAGAAGGTA 58.473 45.455 0.00 0.00 32.21 3.08
3030 5595 2.348472 TCATCAACCCAAGGAGAAGGT 58.652 47.619 0.00 0.00 34.60 3.50
3031 5596 3.084786 GTTCATCAACCCAAGGAGAAGG 58.915 50.000 0.00 0.00 0.00 3.46
3032 5597 4.006319 GAGTTCATCAACCCAAGGAGAAG 58.994 47.826 0.00 0.00 32.22 2.85
3033 5598 3.557054 CGAGTTCATCAACCCAAGGAGAA 60.557 47.826 0.00 0.00 32.22 2.87
3034 5599 2.028112 CGAGTTCATCAACCCAAGGAGA 60.028 50.000 0.00 0.00 32.22 3.71
3035 5600 2.028112 TCGAGTTCATCAACCCAAGGAG 60.028 50.000 0.00 0.00 32.22 3.69
3036 5601 1.974957 TCGAGTTCATCAACCCAAGGA 59.025 47.619 0.00 0.00 32.22 3.36
3037 5602 2.350522 CTCGAGTTCATCAACCCAAGG 58.649 52.381 3.62 0.00 32.22 3.61
3038 5603 1.734465 GCTCGAGTTCATCAACCCAAG 59.266 52.381 15.13 0.00 32.22 3.61
3039 5604 1.610624 GGCTCGAGTTCATCAACCCAA 60.611 52.381 15.13 0.00 32.22 4.12
3040 5605 0.036388 GGCTCGAGTTCATCAACCCA 60.036 55.000 15.13 0.00 32.22 4.51
3041 5606 1.084370 CGGCTCGAGTTCATCAACCC 61.084 60.000 15.13 2.01 32.22 4.11
3042 5607 1.084370 CCGGCTCGAGTTCATCAACC 61.084 60.000 15.13 2.77 32.22 3.77
3043 5608 0.108804 TCCGGCTCGAGTTCATCAAC 60.109 55.000 15.13 0.00 0.00 3.18
3044 5609 0.173481 CTCCGGCTCGAGTTCATCAA 59.827 55.000 15.13 0.00 0.00 2.57
3045 5610 1.809869 CTCCGGCTCGAGTTCATCA 59.190 57.895 15.13 0.00 0.00 3.07
3046 5611 1.590259 GCTCCGGCTCGAGTTCATC 60.590 63.158 15.13 0.00 35.22 2.92
3047 5612 2.496817 GCTCCGGCTCGAGTTCAT 59.503 61.111 15.13 0.00 35.22 2.57
3048 5613 3.760035 GGCTCCGGCTCGAGTTCA 61.760 66.667 15.13 0.00 38.73 3.18
3049 5614 4.856607 CGGCTCCGGCTCGAGTTC 62.857 72.222 15.13 6.08 38.73 3.01
3064 5629 0.806102 CACTACTTCGCCATGACCGG 60.806 60.000 0.00 0.00 0.00 5.28
3065 5630 0.806102 CCACTACTTCGCCATGACCG 60.806 60.000 0.00 0.00 0.00 4.79
3066 5631 1.090052 GCCACTACTTCGCCATGACC 61.090 60.000 0.00 0.00 0.00 4.02
3067 5632 1.090052 GGCCACTACTTCGCCATGAC 61.090 60.000 0.00 0.00 42.52 3.06
3068 5633 1.220749 GGCCACTACTTCGCCATGA 59.779 57.895 0.00 0.00 42.52 3.07
3069 5634 2.173669 CGGCCACTACTTCGCCATG 61.174 63.158 2.24 0.00 43.17 3.66
3070 5635 2.186903 CGGCCACTACTTCGCCAT 59.813 61.111 2.24 0.00 43.17 4.40
3071 5636 4.077184 CCGGCCACTACTTCGCCA 62.077 66.667 2.24 0.00 43.17 5.69
3072 5637 4.078516 ACCGGCCACTACTTCGCC 62.079 66.667 0.00 0.00 39.41 5.54
3073 5638 2.573609 ATCACCGGCCACTACTTCGC 62.574 60.000 0.00 0.00 0.00 4.70
3074 5639 0.806102 CATCACCGGCCACTACTTCG 60.806 60.000 0.00 0.00 0.00 3.79
3075 5640 0.462047 CCATCACCGGCCACTACTTC 60.462 60.000 0.00 0.00 0.00 3.01
3076 5641 1.602237 CCATCACCGGCCACTACTT 59.398 57.895 0.00 0.00 0.00 2.24
3077 5642 3.309582 CCATCACCGGCCACTACT 58.690 61.111 0.00 0.00 0.00 2.57
3085 5650 1.153489 CACTCTCTGCCATCACCGG 60.153 63.158 0.00 0.00 0.00 5.28
3086 5651 1.153489 CCACTCTCTGCCATCACCG 60.153 63.158 0.00 0.00 0.00 4.94
3087 5652 0.835941 ATCCACTCTCTGCCATCACC 59.164 55.000 0.00 0.00 0.00 4.02
3088 5653 1.474677 CCATCCACTCTCTGCCATCAC 60.475 57.143 0.00 0.00 0.00 3.06
3089 5654 0.835276 CCATCCACTCTCTGCCATCA 59.165 55.000 0.00 0.00 0.00 3.07
3090 5655 0.534652 GCCATCCACTCTCTGCCATC 60.535 60.000 0.00 0.00 0.00 3.51
3091 5656 1.530771 GCCATCCACTCTCTGCCAT 59.469 57.895 0.00 0.00 0.00 4.40
3092 5657 2.993008 GCCATCCACTCTCTGCCA 59.007 61.111 0.00 0.00 0.00 4.92
3093 5658 2.202987 CGCCATCCACTCTCTGCC 60.203 66.667 0.00 0.00 0.00 4.85
3094 5659 2.202987 CCGCCATCCACTCTCTGC 60.203 66.667 0.00 0.00 0.00 4.26
3095 5660 1.153489 CACCGCCATCCACTCTCTG 60.153 63.158 0.00 0.00 0.00 3.35
3096 5661 2.362369 CCACCGCCATCCACTCTCT 61.362 63.158 0.00 0.00 0.00 3.10
3097 5662 2.187946 CCACCGCCATCCACTCTC 59.812 66.667 0.00 0.00 0.00 3.20
3098 5663 2.607750 ACCACCGCCATCCACTCT 60.608 61.111 0.00 0.00 0.00 3.24
3099 5664 2.436646 CACCACCGCCATCCACTC 60.437 66.667 0.00 0.00 0.00 3.51
3100 5665 4.033776 CCACCACCGCCATCCACT 62.034 66.667 0.00 0.00 0.00 4.00
3101 5666 3.976701 CTCCACCACCGCCATCCAC 62.977 68.421 0.00 0.00 0.00 4.02
3102 5667 3.716195 CTCCACCACCGCCATCCA 61.716 66.667 0.00 0.00 0.00 3.41
3104 5669 3.628646 AAGCTCCACCACCGCCATC 62.629 63.158 0.00 0.00 0.00 3.51
3105 5670 3.628646 GAAGCTCCACCACCGCCAT 62.629 63.158 0.00 0.00 0.00 4.40
3106 5671 4.329545 GAAGCTCCACCACCGCCA 62.330 66.667 0.00 0.00 0.00 5.69
3109 5674 4.760047 CGGGAAGCTCCACCACCG 62.760 72.222 6.83 0.00 38.64 4.94
3110 5675 3.637273 ACGGGAAGCTCCACCACC 61.637 66.667 6.83 0.00 38.64 4.61
3111 5676 2.358737 CACGGGAAGCTCCACCAC 60.359 66.667 6.83 0.00 38.64 4.16
3112 5677 2.525629 TCACGGGAAGCTCCACCA 60.526 61.111 0.00 0.00 38.64 4.17
3113 5678 2.266055 CTCACGGGAAGCTCCACC 59.734 66.667 0.00 0.00 38.64 4.61
3114 5679 2.435059 GCTCACGGGAAGCTCCAC 60.435 66.667 0.00 0.00 38.64 4.02
3115 5680 2.922503 TGCTCACGGGAAGCTCCA 60.923 61.111 9.89 0.00 38.64 3.86
3116 5681 2.435059 GTGCTCACGGGAAGCTCC 60.435 66.667 9.89 0.00 35.23 4.70
3117 5682 2.435059 GGTGCTCACGGGAAGCTC 60.435 66.667 9.89 6.64 0.00 4.09
3118 5683 4.379243 CGGTGCTCACGGGAAGCT 62.379 66.667 9.89 0.00 0.00 3.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.