Multiple sequence alignment - TraesCS2D01G148600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G148600 chr2D 100.000 2210 0 0 1 2210 89939805 89942014 0.000000e+00 4082.0
1 TraesCS2D01G148600 chr2D 83.893 447 52 12 778 1218 89907848 89908280 2.040000e-110 409.0
2 TraesCS2D01G148600 chr2D 77.830 212 44 3 1798 2008 89908594 89908803 6.400000e-26 128.0
3 TraesCS2D01G148600 chr2B 89.345 779 59 12 699 1464 142675372 142676139 0.000000e+00 957.0
4 TraesCS2D01G148600 chr2B 78.631 716 112 32 858 1548 142445941 142446640 9.370000e-119 436.0
5 TraesCS2D01G148600 chr2B 86.058 416 47 3 1799 2210 142729672 142730080 9.370000e-119 436.0
6 TraesCS2D01G148600 chr2B 77.113 284 42 17 739 1003 142449346 142449625 2.290000e-30 143.0
7 TraesCS2D01G148600 chr2B 94.595 74 4 0 1486 1559 142728911 142728984 4.990000e-22 115.0
8 TraesCS2D01G148600 chr2B 100.000 29 0 0 1485 1513 142728890 142728918 1.000000e-03 54.7
9 TraesCS2D01G148600 chr2A 87.339 853 69 17 723 1559 89596615 89597444 0.000000e+00 941.0
10 TraesCS2D01G148600 chr2A 89.286 392 37 2 1822 2208 89600340 89600731 9.170000e-134 486.0
11 TraesCS2D01G148600 chr2A 78.811 774 104 38 784 1532 89585405 89586143 1.200000e-127 466.0
12 TraesCS2D01G148600 chr2A 81.761 159 29 0 1798 1956 89586170 89586328 1.380000e-27 134.0
13 TraesCS2D01G148600 chr7D 92.058 277 22 0 1 277 420418897 420418621 7.400000e-105 390.0
14 TraesCS2D01G148600 chr7D 91.071 280 22 1 1 277 182497521 182497800 2.070000e-100 375.0
15 TraesCS2D01G148600 chr3D 91.336 277 24 0 1 277 407215692 407215968 1.600000e-101 379.0
16 TraesCS2D01G148600 chr3D 93.299 194 13 0 1559 1752 255424678 255424485 9.990000e-74 287.0
17 TraesCS2D01G148600 chr4B 90.614 277 26 0 1 277 665386679 665386955 3.470000e-98 368.0
18 TraesCS2D01G148600 chr4B 92.308 195 12 3 1558 1752 182177529 182177338 7.770000e-70 274.0
19 TraesCS2D01G148600 chr7B 90.357 280 24 1 1 277 150845525 150845804 4.480000e-97 364.0
20 TraesCS2D01G148600 chr7B 90.511 274 20 3 4 277 72515048 72514781 7.500000e-95 357.0
21 TraesCS2D01G148600 chr1D 90.253 277 27 0 1 277 51048643 51048367 1.610000e-96 363.0
22 TraesCS2D01G148600 chr1B 90.217 276 27 0 2 277 22164519 22164794 5.800000e-96 361.0
23 TraesCS2D01G148600 chr5A 89.892 277 27 1 1 277 473956494 473956769 2.700000e-94 355.0
24 TraesCS2D01G148600 chr4D 93.814 194 12 0 1559 1752 439770757 439770564 2.150000e-75 292.0
25 TraesCS2D01G148600 chr3B 93.814 194 11 1 1559 1752 377115405 377115213 7.720000e-75 291.0
26 TraesCS2D01G148600 chr5D 92.746 193 14 0 1559 1751 133319934 133320126 1.670000e-71 279.0
27 TraesCS2D01G148600 chr5D 92.308 195 15 0 1558 1752 484404580 484404774 6.010000e-71 278.0
28 TraesCS2D01G148600 chr5D 92.268 194 15 0 1559 1752 451067143 451067336 2.160000e-70 276.0
29 TraesCS2D01G148600 chr6D 92.268 194 13 2 1559 1752 26033933 26033742 7.770000e-70 274.0
30 TraesCS2D01G148600 chr6D 91.414 198 17 0 1558 1755 327022156 327021959 2.800000e-69 272.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G148600 chr2D 89939805 89942014 2209 False 4082.0 4082 100.0000 1 2210 1 chr2D.!!$F1 2209
1 TraesCS2D01G148600 chr2D 89907848 89908803 955 False 268.5 409 80.8615 778 2008 2 chr2D.!!$F2 1230
2 TraesCS2D01G148600 chr2B 142675372 142676139 767 False 957.0 957 89.3450 699 1464 1 chr2B.!!$F1 765
3 TraesCS2D01G148600 chr2B 142445941 142449625 3684 False 289.5 436 77.8720 739 1548 2 chr2B.!!$F2 809
4 TraesCS2D01G148600 chr2B 142728890 142730080 1190 False 201.9 436 93.5510 1485 2210 3 chr2B.!!$F3 725
5 TraesCS2D01G148600 chr2A 89596615 89600731 4116 False 713.5 941 88.3125 723 2208 2 chr2A.!!$F2 1485
6 TraesCS2D01G148600 chr2A 89585405 89586328 923 False 300.0 466 80.2860 784 1956 2 chr2A.!!$F1 1172

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
22 23 0.030638 CAAAGTTGTTCACGGCCTGG 59.969 55.0 0.0 0.0 0.00 4.45 F
187 188 0.032678 AAGGAGCATACGATGGAGCG 59.967 55.0 0.0 0.0 37.29 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1092 1112 0.179215 CAACGATTGCCGAGAAGTGC 60.179 55.0 0.0 0.0 41.76 4.40 R
1254 1282 0.400213 TTGGACTCCATTTGCTCGGT 59.600 50.0 0.0 0.0 31.53 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.872028 CAGCAAAGTTGTTCACGGC 58.128 52.632 0.00 0.00 0.00 5.68
19 20 0.594796 CAGCAAAGTTGTTCACGGCC 60.595 55.000 0.00 0.00 0.00 6.13
20 21 0.751643 AGCAAAGTTGTTCACGGCCT 60.752 50.000 0.00 0.00 0.00 5.19
21 22 0.594796 GCAAAGTTGTTCACGGCCTG 60.595 55.000 0.00 0.00 0.00 4.85
22 23 0.030638 CAAAGTTGTTCACGGCCTGG 59.969 55.000 0.00 0.00 0.00 4.45
23 24 0.106918 AAAGTTGTTCACGGCCTGGA 60.107 50.000 0.00 0.00 0.00 3.86
24 25 0.535102 AAGTTGTTCACGGCCTGGAG 60.535 55.000 0.00 0.00 0.00 3.86
25 26 1.070786 GTTGTTCACGGCCTGGAGA 59.929 57.895 0.00 0.00 0.00 3.71
26 27 0.534203 GTTGTTCACGGCCTGGAGAA 60.534 55.000 0.00 1.20 0.00 2.87
27 28 0.181587 TTGTTCACGGCCTGGAGAAA 59.818 50.000 0.00 0.00 0.00 2.52
28 29 0.250295 TGTTCACGGCCTGGAGAAAG 60.250 55.000 0.00 0.00 0.00 2.62
29 30 0.955919 GTTCACGGCCTGGAGAAAGG 60.956 60.000 0.00 0.00 40.63 3.11
35 36 2.352805 CCTGGAGAAAGGCGGCTT 59.647 61.111 19.90 19.90 0.00 4.35
36 37 2.042831 CCTGGAGAAAGGCGGCTTG 61.043 63.158 26.23 11.17 0.00 4.01
37 38 1.003355 CTGGAGAAAGGCGGCTTGA 60.003 57.895 26.23 6.26 0.00 3.02
38 39 0.393537 CTGGAGAAAGGCGGCTTGAT 60.394 55.000 26.23 16.61 0.00 2.57
39 40 0.392998 TGGAGAAAGGCGGCTTGATC 60.393 55.000 26.23 23.33 0.00 2.92
40 41 1.098129 GGAGAAAGGCGGCTTGATCC 61.098 60.000 28.43 28.43 0.00 3.36
41 42 1.077429 AGAAAGGCGGCTTGATCCC 60.077 57.895 26.23 11.84 0.00 3.85
42 43 1.378514 GAAAGGCGGCTTGATCCCA 60.379 57.895 26.23 0.00 0.00 4.37
43 44 1.379044 AAAGGCGGCTTGATCCCAG 60.379 57.895 26.23 0.00 0.00 4.45
44 45 4.496336 AGGCGGCTTGATCCCAGC 62.496 66.667 5.25 5.58 0.00 4.85
45 46 4.496336 GGCGGCTTGATCCCAGCT 62.496 66.667 12.46 0.00 0.00 4.24
46 47 2.899339 GCGGCTTGATCCCAGCTC 60.899 66.667 12.46 4.04 0.00 4.09
47 48 2.587194 CGGCTTGATCCCAGCTCG 60.587 66.667 12.46 10.60 0.00 5.03
48 49 2.203126 GGCTTGATCCCAGCTCGG 60.203 66.667 12.46 0.00 0.00 4.63
49 50 2.899339 GCTTGATCCCAGCTCGGC 60.899 66.667 6.73 0.00 0.00 5.54
50 51 2.586245 CTTGATCCCAGCTCGGCA 59.414 61.111 0.00 0.00 0.00 5.69
51 52 1.523258 CTTGATCCCAGCTCGGCAG 60.523 63.158 0.00 0.00 0.00 4.85
52 53 2.249413 CTTGATCCCAGCTCGGCAGT 62.249 60.000 0.00 0.00 0.00 4.40
53 54 2.202987 GATCCCAGCTCGGCAGTG 60.203 66.667 0.00 0.00 0.00 3.66
54 55 4.479993 ATCCCAGCTCGGCAGTGC 62.480 66.667 6.55 6.55 37.15 4.40
58 59 4.694233 CAGCTCGGCAGTGCAGGT 62.694 66.667 18.61 9.47 39.17 4.00
59 60 4.694233 AGCTCGGCAGTGCAGGTG 62.694 66.667 18.61 10.70 39.17 4.00
60 61 4.687215 GCTCGGCAGTGCAGGTGA 62.687 66.667 18.61 7.86 36.90 4.02
61 62 2.433838 CTCGGCAGTGCAGGTGAG 60.434 66.667 18.61 13.61 0.00 3.51
62 63 3.947132 CTCGGCAGTGCAGGTGAGG 62.947 68.421 18.61 0.00 0.00 3.86
63 64 4.320456 CGGCAGTGCAGGTGAGGT 62.320 66.667 18.61 0.00 0.00 3.85
64 65 2.113986 GGCAGTGCAGGTGAGGTT 59.886 61.111 18.61 0.00 0.00 3.50
65 66 2.263741 GGCAGTGCAGGTGAGGTTG 61.264 63.158 18.61 0.00 0.00 3.77
66 67 2.263741 GCAGTGCAGGTGAGGTTGG 61.264 63.158 11.09 0.00 0.00 3.77
67 68 1.149174 CAGTGCAGGTGAGGTTGGT 59.851 57.895 0.00 0.00 0.00 3.67
68 69 1.149174 AGTGCAGGTGAGGTTGGTG 59.851 57.895 0.00 0.00 0.00 4.17
69 70 1.152963 GTGCAGGTGAGGTTGGTGT 60.153 57.895 0.00 0.00 0.00 4.16
70 71 1.152984 TGCAGGTGAGGTTGGTGTG 60.153 57.895 0.00 0.00 0.00 3.82
71 72 1.898574 GCAGGTGAGGTTGGTGTGG 60.899 63.158 0.00 0.00 0.00 4.17
72 73 1.228245 CAGGTGAGGTTGGTGTGGG 60.228 63.158 0.00 0.00 0.00 4.61
73 74 1.696314 AGGTGAGGTTGGTGTGGGT 60.696 57.895 0.00 0.00 0.00 4.51
74 75 0.400815 AGGTGAGGTTGGTGTGGGTA 60.401 55.000 0.00 0.00 0.00 3.69
75 76 0.036306 GGTGAGGTTGGTGTGGGTAG 59.964 60.000 0.00 0.00 0.00 3.18
76 77 0.605589 GTGAGGTTGGTGTGGGTAGC 60.606 60.000 0.00 0.00 0.00 3.58
77 78 1.057275 TGAGGTTGGTGTGGGTAGCA 61.057 55.000 0.00 0.00 0.00 3.49
78 79 0.321653 GAGGTTGGTGTGGGTAGCAG 60.322 60.000 0.00 0.00 0.00 4.24
79 80 1.971695 GGTTGGTGTGGGTAGCAGC 60.972 63.158 0.00 0.00 35.19 5.25
80 81 2.031919 TTGGTGTGGGTAGCAGCG 59.968 61.111 0.00 0.00 37.18 5.18
81 82 4.697756 TGGTGTGGGTAGCAGCGC 62.698 66.667 0.00 0.00 37.18 5.92
83 84 4.697756 GTGTGGGTAGCAGCGCCA 62.698 66.667 2.29 0.00 0.00 5.69
84 85 4.393155 TGTGGGTAGCAGCGCCAG 62.393 66.667 2.29 0.00 0.00 4.85
95 96 3.720193 GCGCCAGCTGATATGCCG 61.720 66.667 17.39 8.68 41.01 5.69
96 97 2.029518 CGCCAGCTGATATGCCGA 59.970 61.111 17.39 0.00 0.00 5.54
97 98 1.375140 CGCCAGCTGATATGCCGAT 60.375 57.895 17.39 0.00 0.00 4.18
98 99 1.632948 CGCCAGCTGATATGCCGATG 61.633 60.000 17.39 0.00 0.00 3.84
99 100 0.321034 GCCAGCTGATATGCCGATGA 60.321 55.000 17.39 0.00 0.00 2.92
100 101 1.879372 GCCAGCTGATATGCCGATGAA 60.879 52.381 17.39 0.00 0.00 2.57
101 102 2.074576 CCAGCTGATATGCCGATGAAG 58.925 52.381 17.39 0.00 0.00 3.02
102 103 2.074576 CAGCTGATATGCCGATGAAGG 58.925 52.381 8.42 0.00 0.00 3.46
111 112 2.093216 CCGATGAAGGCAGAACAGC 58.907 57.895 0.00 0.00 0.00 4.40
118 119 2.811317 GGCAGAACAGCCGACGAG 60.811 66.667 0.00 0.00 46.12 4.18
119 120 2.811317 GCAGAACAGCCGACGAGG 60.811 66.667 0.00 0.00 44.97 4.63
120 121 2.125912 CAGAACAGCCGACGAGGG 60.126 66.667 0.00 0.00 41.48 4.30
128 129 3.207354 CCGACGAGGGCATGTAGT 58.793 61.111 0.00 0.00 35.97 2.73
129 130 2.411535 CCGACGAGGGCATGTAGTA 58.588 57.895 0.00 0.00 35.97 1.82
130 131 0.311165 CCGACGAGGGCATGTAGTAG 59.689 60.000 0.00 0.00 35.97 2.57
131 132 1.306148 CGACGAGGGCATGTAGTAGA 58.694 55.000 0.00 0.00 0.00 2.59
132 133 1.264557 CGACGAGGGCATGTAGTAGAG 59.735 57.143 0.00 0.00 0.00 2.43
133 134 2.573369 GACGAGGGCATGTAGTAGAGA 58.427 52.381 0.00 0.00 0.00 3.10
134 135 2.291190 GACGAGGGCATGTAGTAGAGAC 59.709 54.545 0.00 0.00 0.00 3.36
135 136 2.092321 ACGAGGGCATGTAGTAGAGACT 60.092 50.000 0.00 0.00 39.92 3.24
136 137 2.952978 CGAGGGCATGTAGTAGAGACTT 59.047 50.000 0.00 0.00 37.10 3.01
137 138 3.003897 CGAGGGCATGTAGTAGAGACTTC 59.996 52.174 0.00 0.00 37.10 3.01
138 139 3.301274 AGGGCATGTAGTAGAGACTTCC 58.699 50.000 0.00 0.00 37.10 3.46
139 140 2.034812 GGGCATGTAGTAGAGACTTCCG 59.965 54.545 0.00 0.00 37.10 4.30
140 141 2.688958 GGCATGTAGTAGAGACTTCCGT 59.311 50.000 0.00 0.00 37.10 4.69
141 142 3.243134 GGCATGTAGTAGAGACTTCCGTC 60.243 52.174 0.00 0.00 40.54 4.79
142 143 3.377485 GCATGTAGTAGAGACTTCCGTCA 59.623 47.826 0.00 0.00 42.73 4.35
143 144 4.496673 GCATGTAGTAGAGACTTCCGTCAG 60.497 50.000 0.00 0.00 42.73 3.51
144 145 3.008330 TGTAGTAGAGACTTCCGTCAGC 58.992 50.000 0.00 0.00 42.73 4.26
145 146 2.201921 AGTAGAGACTTCCGTCAGCA 57.798 50.000 0.00 0.00 42.73 4.41
146 147 2.088423 AGTAGAGACTTCCGTCAGCAG 58.912 52.381 0.00 0.00 42.73 4.24
147 148 1.133407 GTAGAGACTTCCGTCAGCAGG 59.867 57.143 0.00 0.00 42.73 4.85
148 149 0.251386 AGAGACTTCCGTCAGCAGGA 60.251 55.000 0.00 0.00 42.73 3.86
149 150 0.172352 GAGACTTCCGTCAGCAGGAG 59.828 60.000 0.00 0.00 42.73 3.69
150 151 0.251386 AGACTTCCGTCAGCAGGAGA 60.251 55.000 0.00 0.00 42.73 3.71
151 152 0.172352 GACTTCCGTCAGCAGGAGAG 59.828 60.000 0.00 0.00 39.98 3.20
152 153 1.254284 ACTTCCGTCAGCAGGAGAGG 61.254 60.000 0.00 0.00 39.22 3.69
153 154 1.954362 CTTCCGTCAGCAGGAGAGGG 61.954 65.000 0.00 0.00 41.25 4.30
154 155 4.154347 CCGTCAGCAGGAGAGGGC 62.154 72.222 0.00 0.00 34.67 5.19
155 156 4.504916 CGTCAGCAGGAGAGGGCG 62.505 72.222 0.00 0.00 34.54 6.13
156 157 3.071206 GTCAGCAGGAGAGGGCGA 61.071 66.667 0.00 0.00 34.54 5.54
157 158 2.757508 TCAGCAGGAGAGGGCGAG 60.758 66.667 0.00 0.00 34.54 5.03
158 159 3.847602 CAGCAGGAGAGGGCGAGG 61.848 72.222 0.00 0.00 34.54 4.63
159 160 4.067512 AGCAGGAGAGGGCGAGGA 62.068 66.667 0.00 0.00 34.54 3.71
160 161 3.077556 GCAGGAGAGGGCGAGGAA 61.078 66.667 0.00 0.00 0.00 3.36
161 162 3.087666 GCAGGAGAGGGCGAGGAAG 62.088 68.421 0.00 0.00 0.00 3.46
162 163 2.762043 AGGAGAGGGCGAGGAAGC 60.762 66.667 0.00 0.00 0.00 3.86
163 164 3.077556 GGAGAGGGCGAGGAAGCA 61.078 66.667 0.00 0.00 39.27 3.91
164 165 2.185608 GAGAGGGCGAGGAAGCAC 59.814 66.667 0.00 0.00 41.77 4.40
165 166 3.378399 GAGAGGGCGAGGAAGCACC 62.378 68.421 0.00 0.00 42.61 5.01
166 167 3.706373 GAGGGCGAGGAAGCACCA 61.706 66.667 2.96 0.00 42.61 4.17
167 168 3.011517 AGGGCGAGGAAGCACCAT 61.012 61.111 2.96 0.00 42.61 3.55
168 169 1.686325 GAGGGCGAGGAAGCACCATA 61.686 60.000 2.96 0.00 42.61 2.74
169 170 1.223487 GGGCGAGGAAGCACCATAA 59.777 57.895 2.96 0.00 42.04 1.90
170 171 0.815615 GGGCGAGGAAGCACCATAAG 60.816 60.000 2.96 0.00 42.04 1.73
171 172 0.815615 GGCGAGGAAGCACCATAAGG 60.816 60.000 2.96 0.00 42.04 2.69
172 173 0.178068 GCGAGGAAGCACCATAAGGA 59.822 55.000 0.00 0.00 42.04 3.36
173 174 1.808133 GCGAGGAAGCACCATAAGGAG 60.808 57.143 0.00 0.00 42.04 3.69
183 184 3.329386 CACCATAAGGAGCATACGATGG 58.671 50.000 0.00 5.65 39.80 3.51
184 185 3.006859 CACCATAAGGAGCATACGATGGA 59.993 47.826 12.34 0.00 37.78 3.41
185 186 3.259374 ACCATAAGGAGCATACGATGGAG 59.741 47.826 12.34 0.00 37.78 3.86
186 187 3.257393 CATAAGGAGCATACGATGGAGC 58.743 50.000 0.00 0.00 0.00 4.70
187 188 0.032678 AAGGAGCATACGATGGAGCG 59.967 55.000 0.00 0.00 37.29 5.03
188 189 1.373497 GGAGCATACGATGGAGCGG 60.373 63.158 0.00 0.00 35.12 5.52
189 190 2.024319 GAGCATACGATGGAGCGGC 61.024 63.158 0.00 0.00 35.12 6.53
190 191 2.280119 GCATACGATGGAGCGGCA 60.280 61.111 1.45 0.00 35.12 5.69
191 192 1.669115 GCATACGATGGAGCGGCAT 60.669 57.895 1.45 0.00 35.12 4.40
192 193 1.904852 GCATACGATGGAGCGGCATG 61.905 60.000 1.45 0.00 35.12 4.06
193 194 0.319813 CATACGATGGAGCGGCATGA 60.320 55.000 1.45 0.00 32.81 3.07
194 195 0.610174 ATACGATGGAGCGGCATGAT 59.390 50.000 1.45 0.00 35.12 2.45
195 196 1.253100 TACGATGGAGCGGCATGATA 58.747 50.000 1.45 0.00 35.12 2.15
196 197 0.610174 ACGATGGAGCGGCATGATAT 59.390 50.000 1.45 0.00 35.12 1.63
197 198 1.004595 CGATGGAGCGGCATGATATG 58.995 55.000 1.45 0.00 0.00 1.78
207 208 1.492873 CATGATATGCGTTCGCCGG 59.507 57.895 14.44 0.00 36.94 6.13
208 209 2.317609 ATGATATGCGTTCGCCGGC 61.318 57.895 19.07 19.07 36.94 6.13
209 210 2.661866 GATATGCGTTCGCCGGCT 60.662 61.111 26.68 6.03 36.94 5.52
210 211 2.943345 GATATGCGTTCGCCGGCTG 61.943 63.158 26.68 18.23 36.94 4.85
211 212 3.733344 ATATGCGTTCGCCGGCTGT 62.733 57.895 26.68 0.00 36.94 4.40
221 222 3.072468 CCGGCTGTCGAGGGGTAA 61.072 66.667 1.87 0.00 42.43 2.85
222 223 2.494918 CGGCTGTCGAGGGGTAAG 59.505 66.667 0.00 0.00 42.43 2.34
223 224 2.187163 GGCTGTCGAGGGGTAAGC 59.813 66.667 0.00 0.00 0.00 3.09
224 225 2.656069 GGCTGTCGAGGGGTAAGCA 61.656 63.158 0.00 0.00 35.55 3.91
225 226 1.295423 GCTGTCGAGGGGTAAGCAA 59.705 57.895 0.00 0.00 34.01 3.91
226 227 1.019805 GCTGTCGAGGGGTAAGCAAC 61.020 60.000 0.00 0.00 34.01 4.17
234 235 4.320910 GGTAAGCAACCCAGAGGC 57.679 61.111 0.00 0.00 43.16 4.70
235 236 1.378762 GGTAAGCAACCCAGAGGCA 59.621 57.895 0.00 0.00 43.16 4.75
236 237 0.960861 GGTAAGCAACCCAGAGGCAC 60.961 60.000 0.00 0.00 43.16 5.01
237 238 0.960861 GTAAGCAACCCAGAGGCACC 60.961 60.000 0.00 0.00 36.11 5.01
238 239 1.422977 TAAGCAACCCAGAGGCACCA 61.423 55.000 0.00 0.00 36.11 4.17
239 240 2.674380 GCAACCCAGAGGCACCAG 60.674 66.667 0.00 0.00 36.11 4.00
240 241 2.839098 CAACCCAGAGGCACCAGT 59.161 61.111 0.00 0.00 36.11 4.00
241 242 2.066340 CAACCCAGAGGCACCAGTA 58.934 57.895 0.00 0.00 36.11 2.74
242 243 0.620556 CAACCCAGAGGCACCAGTAT 59.379 55.000 0.00 0.00 36.11 2.12
243 244 0.620556 AACCCAGAGGCACCAGTATG 59.379 55.000 0.00 0.00 36.11 2.39
244 245 1.153086 CCCAGAGGCACCAGTATGC 60.153 63.158 0.00 0.00 45.34 3.14
250 251 4.910956 GCACCAGTATGCAGACGA 57.089 55.556 5.71 0.00 45.39 4.20
251 252 3.137484 GCACCAGTATGCAGACGAA 57.863 52.632 5.71 0.00 45.39 3.85
252 253 1.438651 GCACCAGTATGCAGACGAAA 58.561 50.000 5.71 0.00 45.39 3.46
253 254 1.394917 GCACCAGTATGCAGACGAAAG 59.605 52.381 5.71 0.00 45.39 2.62
254 255 1.394917 CACCAGTATGCAGACGAAAGC 59.605 52.381 5.71 0.00 31.97 3.51
255 256 1.009829 CCAGTATGCAGACGAAAGCC 58.990 55.000 5.71 0.00 31.97 4.35
256 257 1.675714 CCAGTATGCAGACGAAAGCCA 60.676 52.381 5.71 0.00 31.97 4.75
257 258 1.662629 CAGTATGCAGACGAAAGCCAG 59.337 52.381 5.71 0.00 0.00 4.85
258 259 1.009829 GTATGCAGACGAAAGCCAGG 58.990 55.000 0.00 0.00 0.00 4.45
259 260 0.613260 TATGCAGACGAAAGCCAGGT 59.387 50.000 0.00 0.00 0.00 4.00
260 261 0.250901 ATGCAGACGAAAGCCAGGTT 60.251 50.000 0.00 0.00 0.00 3.50
261 262 1.165907 TGCAGACGAAAGCCAGGTTG 61.166 55.000 0.00 0.00 0.00 3.77
262 263 1.576421 CAGACGAAAGCCAGGTTGC 59.424 57.895 0.00 0.00 0.00 4.17
263 264 1.600916 AGACGAAAGCCAGGTTGCC 60.601 57.895 0.00 0.00 0.00 4.52
264 265 1.896660 GACGAAAGCCAGGTTGCCA 60.897 57.895 0.00 0.00 0.00 4.92
265 266 1.452145 GACGAAAGCCAGGTTGCCAA 61.452 55.000 0.00 0.00 0.00 4.52
266 267 1.286880 CGAAAGCCAGGTTGCCAAG 59.713 57.895 0.00 0.00 0.00 3.61
267 268 1.005748 GAAAGCCAGGTTGCCAAGC 60.006 57.895 0.00 0.00 0.00 4.01
268 269 1.747325 GAAAGCCAGGTTGCCAAGCA 61.747 55.000 9.58 0.00 36.47 3.91
269 270 2.031674 AAAGCCAGGTTGCCAAGCAC 62.032 55.000 9.58 0.00 38.71 4.40
270 271 3.994853 GCCAGGTTGCCAAGCACC 61.995 66.667 9.58 0.00 38.71 5.01
271 272 3.673484 CCAGGTTGCCAAGCACCG 61.673 66.667 9.58 0.00 38.71 4.94
272 273 3.673484 CAGGTTGCCAAGCACCGG 61.673 66.667 9.58 0.00 38.71 5.28
273 274 4.204028 AGGTTGCCAAGCACCGGT 62.204 61.111 0.00 0.00 38.71 5.28
274 275 3.977244 GGTTGCCAAGCACCGGTG 61.977 66.667 30.66 30.66 38.71 4.94
275 276 3.216292 GTTGCCAAGCACCGGTGT 61.216 61.111 33.92 18.91 38.71 4.16
276 277 1.894756 GTTGCCAAGCACCGGTGTA 60.895 57.895 33.92 12.24 38.71 2.90
277 278 1.074072 TTGCCAAGCACCGGTGTAT 59.926 52.632 33.92 21.19 38.71 2.29
278 279 0.538516 TTGCCAAGCACCGGTGTATT 60.539 50.000 33.92 25.36 38.71 1.89
279 280 0.538516 TGCCAAGCACCGGTGTATTT 60.539 50.000 33.92 22.52 31.71 1.40
280 281 1.271434 TGCCAAGCACCGGTGTATTTA 60.271 47.619 33.92 14.84 31.71 1.40
281 282 1.813786 GCCAAGCACCGGTGTATTTAA 59.186 47.619 33.92 0.00 0.00 1.52
282 283 2.425668 GCCAAGCACCGGTGTATTTAAT 59.574 45.455 33.92 11.12 0.00 1.40
283 284 3.628487 GCCAAGCACCGGTGTATTTAATA 59.372 43.478 33.92 0.00 0.00 0.98
284 285 4.096682 GCCAAGCACCGGTGTATTTAATAA 59.903 41.667 33.92 0.00 0.00 1.40
285 286 5.393243 GCCAAGCACCGGTGTATTTAATAAA 60.393 40.000 33.92 0.00 0.00 1.40
286 287 6.681865 GCCAAGCACCGGTGTATTTAATAAAT 60.682 38.462 33.92 3.56 34.90 1.40
287 288 6.695278 CCAAGCACCGGTGTATTTAATAAATG 59.305 38.462 33.92 15.36 32.38 2.32
288 289 7.254852 CAAGCACCGGTGTATTTAATAAATGT 58.745 34.615 33.92 3.35 32.38 2.71
289 290 6.791303 AGCACCGGTGTATTTAATAAATGTG 58.209 36.000 33.92 4.37 32.38 3.21
290 291 5.457473 GCACCGGTGTATTTAATAAATGTGC 59.543 40.000 33.92 15.70 36.68 4.57
291 292 6.556212 CACCGGTGTATTTAATAAATGTGCA 58.444 36.000 26.95 2.81 32.38 4.57
292 293 7.199766 CACCGGTGTATTTAATAAATGTGCAT 58.800 34.615 26.95 0.00 32.38 3.96
293 294 7.167302 CACCGGTGTATTTAATAAATGTGCATG 59.833 37.037 26.95 0.00 32.38 4.06
294 295 6.640499 CCGGTGTATTTAATAAATGTGCATGG 59.360 38.462 8.39 7.25 32.38 3.66
295 296 6.143758 CGGTGTATTTAATAAATGTGCATGGC 59.856 38.462 8.39 0.00 32.38 4.40
296 297 6.983307 GGTGTATTTAATAAATGTGCATGGCA 59.017 34.615 8.39 0.00 32.11 4.92
297 298 7.656948 GGTGTATTTAATAAATGTGCATGGCAT 59.343 33.333 8.39 0.00 35.08 4.40
298 299 9.689976 GTGTATTTAATAAATGTGCATGGCATA 57.310 29.630 8.39 0.00 35.08 3.14
311 312 9.999660 ATGTGCATGGCATATTAATAAAAATCA 57.000 25.926 0.00 0.00 41.91 2.57
312 313 9.828039 TGTGCATGGCATATTAATAAAAATCAA 57.172 25.926 0.00 0.00 41.91 2.57
395 396 9.713713 AATCATCATGTGTTTGAAAATTGATCA 57.286 25.926 0.00 0.00 0.00 2.92
396 397 9.884636 ATCATCATGTGTTTGAAAATTGATCAT 57.115 25.926 0.00 0.00 0.00 2.45
397 398 9.361315 TCATCATGTGTTTGAAAATTGATCATC 57.639 29.630 0.00 0.00 0.00 2.92
398 399 7.800015 TCATGTGTTTGAAAATTGATCATCG 57.200 32.000 0.00 0.00 0.00 3.84
399 400 7.592051 TCATGTGTTTGAAAATTGATCATCGA 58.408 30.769 0.00 0.00 0.00 3.59
400 401 7.751793 TCATGTGTTTGAAAATTGATCATCGAG 59.248 33.333 0.00 0.00 0.00 4.04
401 402 6.969366 TGTGTTTGAAAATTGATCATCGAGT 58.031 32.000 0.00 0.00 0.00 4.18
402 403 8.093659 TGTGTTTGAAAATTGATCATCGAGTA 57.906 30.769 0.00 0.00 0.00 2.59
403 404 8.729756 TGTGTTTGAAAATTGATCATCGAGTAT 58.270 29.630 0.00 0.00 0.00 2.12
404 405 9.559958 GTGTTTGAAAATTGATCATCGAGTATT 57.440 29.630 0.00 0.00 0.00 1.89
418 419 9.702726 ATCATCGAGTATTAAAAATGTTCAACG 57.297 29.630 0.00 0.00 0.00 4.10
419 420 8.714179 TCATCGAGTATTAAAAATGTTCAACGT 58.286 29.630 0.00 0.00 0.00 3.99
420 421 9.961266 CATCGAGTATTAAAAATGTTCAACGTA 57.039 29.630 0.00 0.00 0.00 3.57
431 432 9.612620 AAAAATGTTCAACGTATTTTGCAAAAA 57.387 22.222 27.10 14.23 35.05 1.94
432 433 8.819152 AAATGTTCAACGTATTTTGCAAAAAG 57.181 26.923 27.10 21.72 0.00 2.27
433 434 5.790547 TGTTCAACGTATTTTGCAAAAAGC 58.209 33.333 27.10 20.15 45.96 3.51
448 449 6.885735 GCAAAAAGCATTCACCGTATATTT 57.114 33.333 0.00 0.00 44.79 1.40
449 450 6.695245 GCAAAAAGCATTCACCGTATATTTG 58.305 36.000 0.00 0.00 44.79 2.32
450 451 6.529829 GCAAAAAGCATTCACCGTATATTTGA 59.470 34.615 0.00 0.00 44.79 2.69
451 452 7.062839 GCAAAAAGCATTCACCGTATATTTGAA 59.937 33.333 0.00 0.00 44.79 2.69
452 453 8.920665 CAAAAAGCATTCACCGTATATTTGAAA 58.079 29.630 0.00 0.00 33.13 2.69
453 454 8.687824 AAAAGCATTCACCGTATATTTGAAAG 57.312 30.769 0.00 0.00 33.13 2.62
454 455 7.624360 AAGCATTCACCGTATATTTGAAAGA 57.376 32.000 0.00 0.00 33.13 2.52
455 456 7.807977 AGCATTCACCGTATATTTGAAAGAT 57.192 32.000 0.00 0.00 33.13 2.40
456 457 7.642669 AGCATTCACCGTATATTTGAAAGATG 58.357 34.615 0.00 0.00 33.13 2.90
457 458 7.283127 AGCATTCACCGTATATTTGAAAGATGT 59.717 33.333 0.00 0.00 33.13 3.06
458 459 7.915397 GCATTCACCGTATATTTGAAAGATGTT 59.085 33.333 0.00 0.00 33.13 2.71
478 479 9.753674 AGATGTTAATGTAGAAAATTTCCCTCA 57.246 29.630 1.57 0.44 0.00 3.86
513 514 5.532025 AAAGAAGAATAAAAGAGTCGCCG 57.468 39.130 0.00 0.00 0.00 6.46
514 515 4.189639 AGAAGAATAAAAGAGTCGCCGT 57.810 40.909 0.00 0.00 0.00 5.68
515 516 3.927142 AGAAGAATAAAAGAGTCGCCGTG 59.073 43.478 0.00 0.00 0.00 4.94
516 517 3.314541 AGAATAAAAGAGTCGCCGTGT 57.685 42.857 0.00 0.00 0.00 4.49
517 518 3.660865 AGAATAAAAGAGTCGCCGTGTT 58.339 40.909 0.00 0.00 0.00 3.32
518 519 4.062991 AGAATAAAAGAGTCGCCGTGTTT 58.937 39.130 0.00 0.00 0.00 2.83
519 520 5.232463 AGAATAAAAGAGTCGCCGTGTTTA 58.768 37.500 0.00 0.00 0.00 2.01
520 521 5.697633 AGAATAAAAGAGTCGCCGTGTTTAA 59.302 36.000 0.00 0.00 0.00 1.52
521 522 5.927954 ATAAAAGAGTCGCCGTGTTTAAA 57.072 34.783 0.00 0.00 0.00 1.52
522 523 4.619437 AAAAGAGTCGCCGTGTTTAAAA 57.381 36.364 0.00 0.00 0.00 1.52
523 524 4.619437 AAAGAGTCGCCGTGTTTAAAAA 57.381 36.364 0.00 0.00 0.00 1.94
524 525 4.823790 AAGAGTCGCCGTGTTTAAAAAT 57.176 36.364 0.00 0.00 0.00 1.82
525 526 4.823790 AGAGTCGCCGTGTTTAAAAATT 57.176 36.364 0.00 0.00 0.00 1.82
526 527 4.533222 AGAGTCGCCGTGTTTAAAAATTG 58.467 39.130 0.00 0.00 0.00 2.32
527 528 4.035909 AGAGTCGCCGTGTTTAAAAATTGT 59.964 37.500 0.00 0.00 0.00 2.71
528 529 4.674475 AGTCGCCGTGTTTAAAAATTGTT 58.326 34.783 0.00 0.00 0.00 2.83
529 530 4.736307 AGTCGCCGTGTTTAAAAATTGTTC 59.264 37.500 0.00 0.00 0.00 3.18
530 531 4.499758 GTCGCCGTGTTTAAAAATTGTTCA 59.500 37.500 0.00 0.00 0.00 3.18
531 532 5.004535 GTCGCCGTGTTTAAAAATTGTTCAA 59.995 36.000 0.00 0.00 0.00 2.69
532 533 5.749109 TCGCCGTGTTTAAAAATTGTTCAAT 59.251 32.000 0.00 0.00 0.00 2.57
533 534 5.838214 CGCCGTGTTTAAAAATTGTTCAATG 59.162 36.000 0.00 0.00 0.00 2.82
534 535 6.508721 CGCCGTGTTTAAAAATTGTTCAATGT 60.509 34.615 0.00 0.00 0.00 2.71
535 536 6.626882 GCCGTGTTTAAAAATTGTTCAATGTG 59.373 34.615 0.00 0.00 0.00 3.21
536 537 7.675170 GCCGTGTTTAAAAATTGTTCAATGTGT 60.675 33.333 0.00 0.00 0.00 3.72
537 538 8.808529 CCGTGTTTAAAAATTGTTCAATGTGTA 58.191 29.630 0.00 0.00 0.00 2.90
565 566 9.654663 TTTAAAAATCTTCCAAAACGAAAAGGA 57.345 25.926 0.00 0.00 0.00 3.36
566 567 9.654663 TTAAAAATCTTCCAAAACGAAAAGGAA 57.345 25.926 0.00 0.00 37.79 3.36
567 568 8.554835 AAAAATCTTCCAAAACGAAAAGGAAA 57.445 26.923 0.00 0.00 39.47 3.13
568 569 8.554835 AAAATCTTCCAAAACGAAAAGGAAAA 57.445 26.923 0.00 0.00 39.47 2.29
569 570 8.731275 AAATCTTCCAAAACGAAAAGGAAAAT 57.269 26.923 0.00 0.00 39.47 1.82
570 571 8.731275 AATCTTCCAAAACGAAAAGGAAAATT 57.269 26.923 0.00 0.00 39.47 1.82
571 572 8.731275 ATCTTCCAAAACGAAAAGGAAAATTT 57.269 26.923 0.00 0.00 39.47 1.82
572 573 9.825109 ATCTTCCAAAACGAAAAGGAAAATTTA 57.175 25.926 0.00 0.00 39.47 1.40
573 574 9.654663 TCTTCCAAAACGAAAAGGAAAATTTAA 57.345 25.926 0.00 0.00 39.47 1.52
576 577 9.438228 TCCAAAACGAAAAGGAAAATTTAAAGT 57.562 25.926 0.00 0.00 0.00 2.66
633 634 5.500645 AAGAAACTGAAAGGGAGAAAACG 57.499 39.130 0.00 0.00 39.30 3.60
634 635 4.524053 AGAAACTGAAAGGGAGAAAACGT 58.476 39.130 0.00 0.00 39.30 3.99
635 636 4.335594 AGAAACTGAAAGGGAGAAAACGTG 59.664 41.667 0.00 0.00 39.30 4.49
636 637 3.553828 ACTGAAAGGGAGAAAACGTGA 57.446 42.857 0.00 0.00 39.30 4.35
637 638 3.881220 ACTGAAAGGGAGAAAACGTGAA 58.119 40.909 0.00 0.00 39.30 3.18
638 639 4.266714 ACTGAAAGGGAGAAAACGTGAAA 58.733 39.130 0.00 0.00 39.30 2.69
639 640 4.703093 ACTGAAAGGGAGAAAACGTGAAAA 59.297 37.500 0.00 0.00 39.30 2.29
640 641 4.989044 TGAAAGGGAGAAAACGTGAAAAC 58.011 39.130 0.00 0.00 0.00 2.43
641 642 4.459685 TGAAAGGGAGAAAACGTGAAAACA 59.540 37.500 0.00 0.00 0.00 2.83
642 643 5.047943 TGAAAGGGAGAAAACGTGAAAACAA 60.048 36.000 0.00 0.00 0.00 2.83
643 644 5.394224 AAGGGAGAAAACGTGAAAACAAA 57.606 34.783 0.00 0.00 0.00 2.83
644 645 5.394224 AGGGAGAAAACGTGAAAACAAAA 57.606 34.783 0.00 0.00 0.00 2.44
645 646 5.785243 AGGGAGAAAACGTGAAAACAAAAA 58.215 33.333 0.00 0.00 0.00 1.94
646 647 5.636121 AGGGAGAAAACGTGAAAACAAAAAC 59.364 36.000 0.00 0.00 0.00 2.43
647 648 5.636121 GGGAGAAAACGTGAAAACAAAAACT 59.364 36.000 0.00 0.00 0.00 2.66
648 649 6.400621 GGGAGAAAACGTGAAAACAAAAACTG 60.401 38.462 0.00 0.00 0.00 3.16
649 650 6.400621 GGAGAAAACGTGAAAACAAAAACTGG 60.401 38.462 0.00 0.00 0.00 4.00
650 651 6.217294 AGAAAACGTGAAAACAAAAACTGGA 58.783 32.000 0.00 0.00 0.00 3.86
651 652 6.702282 AGAAAACGTGAAAACAAAAACTGGAA 59.298 30.769 0.00 0.00 0.00 3.53
652 653 7.386573 AGAAAACGTGAAAACAAAAACTGGAAT 59.613 29.630 0.00 0.00 0.00 3.01
653 654 6.401955 AACGTGAAAACAAAAACTGGAATG 57.598 33.333 0.00 0.00 0.00 2.67
654 655 5.715070 ACGTGAAAACAAAAACTGGAATGA 58.285 33.333 0.00 0.00 0.00 2.57
655 656 6.159988 ACGTGAAAACAAAAACTGGAATGAA 58.840 32.000 0.00 0.00 0.00 2.57
656 657 6.647067 ACGTGAAAACAAAAACTGGAATGAAA 59.353 30.769 0.00 0.00 0.00 2.69
657 658 7.171678 ACGTGAAAACAAAAACTGGAATGAAAA 59.828 29.630 0.00 0.00 0.00 2.29
658 659 8.012241 CGTGAAAACAAAAACTGGAATGAAAAA 58.988 29.630 0.00 0.00 0.00 1.94
659 660 9.112789 GTGAAAACAAAAACTGGAATGAAAAAC 57.887 29.630 0.00 0.00 0.00 2.43
660 661 8.293157 TGAAAACAAAAACTGGAATGAAAAACC 58.707 29.630 0.00 0.00 0.00 3.27
661 662 7.751768 AAACAAAAACTGGAATGAAAAACCA 57.248 28.000 0.00 0.00 0.00 3.67
662 663 7.751768 AACAAAAACTGGAATGAAAAACCAA 57.248 28.000 0.00 0.00 33.14 3.67
663 664 7.751768 ACAAAAACTGGAATGAAAAACCAAA 57.248 28.000 0.00 0.00 33.14 3.28
664 665 8.347004 ACAAAAACTGGAATGAAAAACCAAAT 57.653 26.923 0.00 0.00 33.14 2.32
665 666 8.458052 ACAAAAACTGGAATGAAAAACCAAATC 58.542 29.630 0.00 0.00 33.14 2.17
666 667 6.843069 AAACTGGAATGAAAAACCAAATCG 57.157 33.333 0.00 0.00 33.14 3.34
667 668 5.782893 ACTGGAATGAAAAACCAAATCGA 57.217 34.783 0.00 0.00 33.14 3.59
668 669 6.155475 ACTGGAATGAAAAACCAAATCGAA 57.845 33.333 0.00 0.00 33.14 3.71
669 670 6.578023 ACTGGAATGAAAAACCAAATCGAAA 58.422 32.000 0.00 0.00 33.14 3.46
670 671 7.044798 ACTGGAATGAAAAACCAAATCGAAAA 58.955 30.769 0.00 0.00 33.14 2.29
671 672 7.011016 ACTGGAATGAAAAACCAAATCGAAAAC 59.989 33.333 0.00 0.00 33.14 2.43
672 673 6.818644 TGGAATGAAAAACCAAATCGAAAACA 59.181 30.769 0.00 0.00 0.00 2.83
673 674 7.010923 TGGAATGAAAAACCAAATCGAAAACAG 59.989 33.333 0.00 0.00 0.00 3.16
674 675 7.223777 GGAATGAAAAACCAAATCGAAAACAGA 59.776 33.333 0.00 0.00 0.00 3.41
675 676 8.485976 AATGAAAAACCAAATCGAAAACAGAA 57.514 26.923 0.00 0.00 0.00 3.02
676 677 7.891183 TGAAAAACCAAATCGAAAACAGAAA 57.109 28.000 0.00 0.00 0.00 2.52
677 678 8.311650 TGAAAAACCAAATCGAAAACAGAAAA 57.688 26.923 0.00 0.00 0.00 2.29
678 679 8.224437 TGAAAAACCAAATCGAAAACAGAAAAC 58.776 29.630 0.00 0.00 0.00 2.43
679 680 6.656314 AAACCAAATCGAAAACAGAAAACC 57.344 33.333 0.00 0.00 0.00 3.27
680 681 4.689071 ACCAAATCGAAAACAGAAAACCC 58.311 39.130 0.00 0.00 0.00 4.11
681 682 4.160626 ACCAAATCGAAAACAGAAAACCCA 59.839 37.500 0.00 0.00 0.00 4.51
682 683 5.112686 CCAAATCGAAAACAGAAAACCCAA 58.887 37.500 0.00 0.00 0.00 4.12
683 684 5.006261 CCAAATCGAAAACAGAAAACCCAAC 59.994 40.000 0.00 0.00 0.00 3.77
684 685 4.993029 ATCGAAAACAGAAAACCCAACA 57.007 36.364 0.00 0.00 0.00 3.33
685 686 4.785511 TCGAAAACAGAAAACCCAACAA 57.214 36.364 0.00 0.00 0.00 2.83
686 687 4.739195 TCGAAAACAGAAAACCCAACAAG 58.261 39.130 0.00 0.00 0.00 3.16
687 688 4.459685 TCGAAAACAGAAAACCCAACAAGA 59.540 37.500 0.00 0.00 0.00 3.02
688 689 5.047943 TCGAAAACAGAAAACCCAACAAGAA 60.048 36.000 0.00 0.00 0.00 2.52
689 690 5.635700 CGAAAACAGAAAACCCAACAAGAAA 59.364 36.000 0.00 0.00 0.00 2.52
690 691 6.146347 CGAAAACAGAAAACCCAACAAGAAAA 59.854 34.615 0.00 0.00 0.00 2.29
691 692 6.795098 AAACAGAAAACCCAACAAGAAAAC 57.205 33.333 0.00 0.00 0.00 2.43
692 693 5.738619 ACAGAAAACCCAACAAGAAAACT 57.261 34.783 0.00 0.00 0.00 2.66
693 694 5.478407 ACAGAAAACCCAACAAGAAAACTG 58.522 37.500 0.00 0.00 0.00 3.16
694 695 4.869861 CAGAAAACCCAACAAGAAAACTGG 59.130 41.667 0.00 0.00 0.00 4.00
695 696 2.979814 AACCCAACAAGAAAACTGGC 57.020 45.000 0.00 0.00 0.00 4.85
696 697 1.119684 ACCCAACAAGAAAACTGGCC 58.880 50.000 0.00 0.00 0.00 5.36
697 698 0.392706 CCCAACAAGAAAACTGGCCC 59.607 55.000 0.00 0.00 0.00 5.80
700 701 2.962421 CCAACAAGAAAACTGGCCCTTA 59.038 45.455 0.00 0.00 0.00 2.69
769 770 1.337387 GCGACAGTATCTGGGTAGGTC 59.663 57.143 1.90 0.00 35.51 3.85
806 807 1.027357 CCTGATATGCAACCACCTGC 58.973 55.000 0.00 0.00 42.95 4.85
832 833 6.032094 CAGCTCATGAAACCAAATCATACAC 58.968 40.000 0.00 0.00 35.80 2.90
854 855 4.022935 ACGATGTCCTACAGTAAAACACGA 60.023 41.667 15.72 0.00 0.00 4.35
874 875 3.941188 CCGCACCACCACCTCACT 61.941 66.667 0.00 0.00 0.00 3.41
964 982 3.764434 AGCGAACAGGTTGAGATCTAGAA 59.236 43.478 0.00 0.00 0.00 2.10
966 984 4.564769 GCGAACAGGTTGAGATCTAGAAAG 59.435 45.833 0.00 0.00 0.00 2.62
967 985 5.105752 CGAACAGGTTGAGATCTAGAAAGG 58.894 45.833 0.00 0.00 0.00 3.11
972 990 5.068987 CAGGTTGAGATCTAGAAAGGGAGAG 59.931 48.000 0.00 0.00 0.00 3.20
1005 1025 6.988580 CAGATACATACTGAGAGAAAATGCCA 59.011 38.462 0.00 0.00 37.54 4.92
1040 1060 2.135933 GGTGAAGTGGTTCAACGAGAG 58.864 52.381 0.00 0.00 44.44 3.20
1056 1076 1.603739 GAGCAAGGGGTTCGGCTTT 60.604 57.895 0.00 0.00 36.59 3.51
1109 1129 1.005037 TGCACTTCTCGGCAATCGT 60.005 52.632 0.00 0.00 37.03 3.73
1112 1132 1.428448 CACTTCTCGGCAATCGTTGA 58.572 50.000 2.51 0.00 40.32 3.18
1157 1177 1.421485 GCCAGCGTGTCGAATTCAG 59.579 57.895 6.22 0.00 0.00 3.02
1171 1191 0.652592 ATTCAGAATCGAAAGCGGCG 59.347 50.000 0.51 0.51 38.28 6.46
1254 1282 2.570415 TTGTAATTTGCTCCACCCGA 57.430 45.000 0.00 0.00 0.00 5.14
1288 1324 4.383118 GGAGTCCAAGAGTATGCTGCTTTA 60.383 45.833 3.60 0.00 0.00 1.85
1299 1336 3.439857 TGCTGCTTTAGGAAGGATTGT 57.560 42.857 0.00 0.00 32.46 2.71
1565 1743 5.662674 ATGTATTTCCGGGATACTAGAGC 57.337 43.478 21.58 3.88 32.48 4.09
1567 1745 4.897076 TGTATTTCCGGGATACTAGAGCAA 59.103 41.667 21.58 5.23 32.48 3.91
1569 1747 4.336889 TTTCCGGGATACTAGAGCAATG 57.663 45.455 0.00 0.00 0.00 2.82
1570 1748 1.618837 TCCGGGATACTAGAGCAATGC 59.381 52.381 0.00 0.00 0.00 3.56
1571 1749 1.338200 CCGGGATACTAGAGCAATGCC 60.338 57.143 0.00 0.00 0.00 4.40
1572 1750 1.338200 CGGGATACTAGAGCAATGCCC 60.338 57.143 0.00 0.00 0.00 5.36
1573 1751 1.338200 GGGATACTAGAGCAATGCCCG 60.338 57.143 0.00 0.00 0.00 6.13
1575 1753 2.408050 GATACTAGAGCAATGCCCGTG 58.592 52.381 0.00 0.00 0.00 4.94
1576 1754 0.179084 TACTAGAGCAATGCCCGTGC 60.179 55.000 0.00 0.00 42.55 5.34
1577 1755 2.511373 TAGAGCAATGCCCGTGCG 60.511 61.111 0.00 0.00 46.86 5.34
1583 1761 3.600694 AATGCCCGTGCGTTGCAA 61.601 55.556 0.00 0.00 44.90 4.08
1605 2541 9.865321 TGCAACGGGATATAAATATTCTAGTAC 57.135 33.333 0.00 0.00 0.00 2.73
1623 2559 9.595823 TTCTAGTACATTAGCTTGTGAATTACC 57.404 33.333 1.14 0.00 0.00 2.85
1624 2560 8.202137 TCTAGTACATTAGCTTGTGAATTACCC 58.798 37.037 1.14 0.00 0.00 3.69
1626 2562 4.585879 ACATTAGCTTGTGAATTACCCGT 58.414 39.130 0.00 0.00 0.00 5.28
1627 2563 4.634443 ACATTAGCTTGTGAATTACCCGTC 59.366 41.667 0.00 0.00 0.00 4.79
1630 2566 3.686016 AGCTTGTGAATTACCCGTCAAT 58.314 40.909 0.00 0.00 0.00 2.57
1633 2569 5.885912 AGCTTGTGAATTACCCGTCAATAAT 59.114 36.000 0.00 0.00 0.00 1.28
1635 2571 7.554835 AGCTTGTGAATTACCCGTCAATAATAA 59.445 33.333 0.00 0.00 0.00 1.40
1636 2572 8.349983 GCTTGTGAATTACCCGTCAATAATAAT 58.650 33.333 0.00 0.00 0.00 1.28
1637 2573 9.663904 CTTGTGAATTACCCGTCAATAATAATG 57.336 33.333 0.00 0.00 0.00 1.90
1641 2577 9.567776 TGAATTACCCGTCAATAATAATGTGAT 57.432 29.630 0.00 0.00 0.00 3.06
1644 2580 8.740123 TTACCCGTCAATAATAATGTGATTGT 57.260 30.769 0.00 0.00 33.27 2.71
1645 2581 7.026631 ACCCGTCAATAATAATGTGATTGTG 57.973 36.000 0.00 0.00 33.27 3.33
1646 2582 6.601613 ACCCGTCAATAATAATGTGATTGTGT 59.398 34.615 0.00 0.00 33.27 3.72
1675 2801 3.256558 TGTTCATCAGATTCTGCTCGTG 58.743 45.455 8.89 5.55 0.00 4.35
1683 2809 2.012673 GATTCTGCTCGTGAATTGCCT 58.987 47.619 0.00 0.00 34.67 4.75
1685 2811 2.760634 TCTGCTCGTGAATTGCCTTA 57.239 45.000 0.00 0.00 0.00 2.69
1687 2813 4.400529 TCTGCTCGTGAATTGCCTTATA 57.599 40.909 0.00 0.00 0.00 0.98
1691 2817 6.318648 TCTGCTCGTGAATTGCCTTATATTTT 59.681 34.615 0.00 0.00 0.00 1.82
1692 2818 6.264832 TGCTCGTGAATTGCCTTATATTTTG 58.735 36.000 0.00 0.00 0.00 2.44
1694 2820 7.141363 GCTCGTGAATTGCCTTATATTTTGAT 58.859 34.615 0.00 0.00 0.00 2.57
1695 2821 7.649306 GCTCGTGAATTGCCTTATATTTTGATT 59.351 33.333 0.00 0.00 0.00 2.57
1737 2894 6.648879 TTAAACTGGAATTGGTTCAGAAGG 57.351 37.500 0.00 0.00 36.01 3.46
1738 2895 3.884037 ACTGGAATTGGTTCAGAAGGT 57.116 42.857 0.00 0.00 36.01 3.50
1743 3107 6.043938 ACTGGAATTGGTTCAGAAGGTAAGTA 59.956 38.462 0.00 0.00 36.01 2.24
1774 3138 9.656323 AAGGAAAGAAAGGTAAAATAGAAACCT 57.344 29.630 0.00 0.00 45.62 3.50
1911 4790 2.024176 ACTTTATGCGCAACCGAGAT 57.976 45.000 17.11 0.00 36.29 2.75
1942 4825 4.621068 ACAATTGAATGTGTAGCGATGG 57.379 40.909 13.59 0.00 30.82 3.51
1951 4834 4.335082 TGTGTAGCGATGGAATTTTTCG 57.665 40.909 0.00 2.40 36.02 3.46
2008 4892 6.384886 AGAAAATGATAGCAAATCCCCATTGT 59.615 34.615 0.00 0.00 0.00 2.71
2010 4894 4.248174 TGATAGCAAATCCCCATTGTCA 57.752 40.909 0.00 0.00 0.00 3.58
2068 4956 5.175126 CGGTGTACTAGGCAATATTCTTTCG 59.825 44.000 0.00 0.00 0.00 3.46
2075 4963 6.828785 ACTAGGCAATATTCTTTCGGAAATGT 59.171 34.615 3.24 0.00 37.49 2.71
2090 4978 4.687483 CGGAAATGTTAAGTACCTGACGTT 59.313 41.667 0.00 0.00 0.00 3.99
2127 6590 7.440856 ACATGGCAAATTAAACTTTTTCGATGT 59.559 29.630 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 0.106918 TCCAGGCCGTGAACAACTTT 60.107 50.000 0.00 0.00 0.00 2.66
6 7 1.071471 CTCCAGGCCGTGAACAACT 59.929 57.895 0.00 0.00 0.00 3.16
7 8 0.534203 TTCTCCAGGCCGTGAACAAC 60.534 55.000 0.00 0.00 0.00 3.32
9 10 0.250295 CTTTCTCCAGGCCGTGAACA 60.250 55.000 0.00 0.00 0.00 3.18
10 11 0.955919 CCTTTCTCCAGGCCGTGAAC 60.956 60.000 0.00 0.00 0.00 3.18
11 12 1.374947 CCTTTCTCCAGGCCGTGAA 59.625 57.895 0.00 0.00 0.00 3.18
12 13 3.068881 CCTTTCTCCAGGCCGTGA 58.931 61.111 0.00 0.00 0.00 4.35
18 19 2.042831 CAAGCCGCCTTTCTCCAGG 61.043 63.158 0.00 0.00 36.95 4.45
19 20 0.393537 ATCAAGCCGCCTTTCTCCAG 60.394 55.000 0.00 0.00 0.00 3.86
20 21 0.392998 GATCAAGCCGCCTTTCTCCA 60.393 55.000 0.00 0.00 0.00 3.86
21 22 1.098129 GGATCAAGCCGCCTTTCTCC 61.098 60.000 0.00 0.00 0.00 3.71
22 23 1.098129 GGGATCAAGCCGCCTTTCTC 61.098 60.000 0.00 0.00 0.00 2.87
23 24 1.077429 GGGATCAAGCCGCCTTTCT 60.077 57.895 0.00 0.00 0.00 2.52
24 25 1.378514 TGGGATCAAGCCGCCTTTC 60.379 57.895 0.00 0.00 0.00 2.62
25 26 1.379044 CTGGGATCAAGCCGCCTTT 60.379 57.895 0.00 0.00 0.00 3.11
26 27 2.273449 CTGGGATCAAGCCGCCTT 59.727 61.111 0.00 0.00 0.00 4.35
27 28 4.496336 GCTGGGATCAAGCCGCCT 62.496 66.667 8.14 0.00 0.00 5.52
28 29 4.496336 AGCTGGGATCAAGCCGCC 62.496 66.667 14.22 0.00 0.00 6.13
29 30 2.899339 GAGCTGGGATCAAGCCGC 60.899 66.667 14.22 5.50 0.00 6.53
30 31 2.587194 CGAGCTGGGATCAAGCCG 60.587 66.667 14.22 13.26 0.00 5.52
31 32 2.203126 CCGAGCTGGGATCAAGCC 60.203 66.667 9.58 6.92 0.00 4.35
32 33 2.899339 GCCGAGCTGGGATCAAGC 60.899 66.667 20.35 10.80 38.63 4.01
33 34 1.523258 CTGCCGAGCTGGGATCAAG 60.523 63.158 20.35 5.92 37.50 3.02
34 35 2.293318 ACTGCCGAGCTGGGATCAA 61.293 57.895 20.35 0.00 37.50 2.57
35 36 2.685017 ACTGCCGAGCTGGGATCA 60.685 61.111 20.35 6.93 37.50 2.92
36 37 2.202987 CACTGCCGAGCTGGGATC 60.203 66.667 20.35 1.83 37.50 3.36
37 38 4.479993 GCACTGCCGAGCTGGGAT 62.480 66.667 20.35 0.00 37.50 3.85
41 42 4.694233 ACCTGCACTGCCGAGCTG 62.694 66.667 0.00 0.00 0.00 4.24
42 43 4.694233 CACCTGCACTGCCGAGCT 62.694 66.667 0.00 0.00 0.00 4.09
43 44 4.687215 TCACCTGCACTGCCGAGC 62.687 66.667 0.00 0.00 0.00 5.03
44 45 2.433838 CTCACCTGCACTGCCGAG 60.434 66.667 0.00 0.00 0.00 4.63
45 46 4.007644 CCTCACCTGCACTGCCGA 62.008 66.667 0.00 0.00 0.00 5.54
46 47 3.832237 AACCTCACCTGCACTGCCG 62.832 63.158 0.00 0.00 0.00 5.69
47 48 2.113986 AACCTCACCTGCACTGCC 59.886 61.111 0.00 0.00 0.00 4.85
48 49 2.263741 CCAACCTCACCTGCACTGC 61.264 63.158 0.00 0.00 0.00 4.40
49 50 1.149174 ACCAACCTCACCTGCACTG 59.851 57.895 0.00 0.00 0.00 3.66
50 51 1.149174 CACCAACCTCACCTGCACT 59.851 57.895 0.00 0.00 0.00 4.40
51 52 1.152963 ACACCAACCTCACCTGCAC 60.153 57.895 0.00 0.00 0.00 4.57
52 53 1.152984 CACACCAACCTCACCTGCA 60.153 57.895 0.00 0.00 0.00 4.41
53 54 1.898574 CCACACCAACCTCACCTGC 60.899 63.158 0.00 0.00 0.00 4.85
54 55 1.228245 CCCACACCAACCTCACCTG 60.228 63.158 0.00 0.00 0.00 4.00
55 56 0.400815 TACCCACACCAACCTCACCT 60.401 55.000 0.00 0.00 0.00 4.00
56 57 0.036306 CTACCCACACCAACCTCACC 59.964 60.000 0.00 0.00 0.00 4.02
57 58 0.605589 GCTACCCACACCAACCTCAC 60.606 60.000 0.00 0.00 0.00 3.51
58 59 1.057275 TGCTACCCACACCAACCTCA 61.057 55.000 0.00 0.00 0.00 3.86
59 60 0.321653 CTGCTACCCACACCAACCTC 60.322 60.000 0.00 0.00 0.00 3.85
60 61 1.761174 CTGCTACCCACACCAACCT 59.239 57.895 0.00 0.00 0.00 3.50
61 62 1.971695 GCTGCTACCCACACCAACC 60.972 63.158 0.00 0.00 0.00 3.77
62 63 2.325082 CGCTGCTACCCACACCAAC 61.325 63.158 0.00 0.00 0.00 3.77
63 64 2.031919 CGCTGCTACCCACACCAA 59.968 61.111 0.00 0.00 0.00 3.67
64 65 4.697756 GCGCTGCTACCCACACCA 62.698 66.667 0.00 0.00 0.00 4.17
66 67 4.697756 TGGCGCTGCTACCCACAC 62.698 66.667 7.64 0.00 0.00 3.82
67 68 4.393155 CTGGCGCTGCTACCCACA 62.393 66.667 7.64 0.00 0.00 4.17
80 81 0.321034 TCATCGGCATATCAGCTGGC 60.321 55.000 15.13 9.11 41.26 4.85
81 82 2.074576 CTTCATCGGCATATCAGCTGG 58.925 52.381 15.13 0.00 41.26 4.85
82 83 2.074576 CCTTCATCGGCATATCAGCTG 58.925 52.381 7.63 7.63 42.28 4.24
83 84 2.469274 CCTTCATCGGCATATCAGCT 57.531 50.000 0.00 0.00 34.17 4.24
93 94 2.093216 GCTGTTCTGCCTTCATCGG 58.907 57.895 0.00 0.00 0.00 4.18
102 103 2.811317 CCTCGTCGGCTGTTCTGC 60.811 66.667 0.00 0.00 0.00 4.26
103 104 2.125912 CCCTCGTCGGCTGTTCTG 60.126 66.667 0.00 0.00 0.00 3.02
104 105 4.070552 GCCCTCGTCGGCTGTTCT 62.071 66.667 8.07 0.00 46.10 3.01
111 112 0.311165 CTACTACATGCCCTCGTCGG 59.689 60.000 0.00 0.00 0.00 4.79
112 113 1.264557 CTCTACTACATGCCCTCGTCG 59.735 57.143 0.00 0.00 0.00 5.12
113 114 2.291190 GTCTCTACTACATGCCCTCGTC 59.709 54.545 0.00 0.00 0.00 4.20
114 115 2.092321 AGTCTCTACTACATGCCCTCGT 60.092 50.000 0.00 0.00 32.84 4.18
115 116 2.577700 AGTCTCTACTACATGCCCTCG 58.422 52.381 0.00 0.00 32.84 4.63
116 117 3.319689 GGAAGTCTCTACTACATGCCCTC 59.680 52.174 0.00 0.00 33.75 4.30
117 118 3.301274 GGAAGTCTCTACTACATGCCCT 58.699 50.000 0.00 0.00 33.75 5.19
118 119 2.034812 CGGAAGTCTCTACTACATGCCC 59.965 54.545 0.00 0.00 33.75 5.36
119 120 2.688958 ACGGAAGTCTCTACTACATGCC 59.311 50.000 0.00 0.00 44.19 4.40
134 135 1.515020 CCTCTCCTGCTGACGGAAG 59.485 63.158 0.00 0.00 0.00 3.46
135 136 1.984570 CCCTCTCCTGCTGACGGAA 60.985 63.158 0.00 0.00 0.00 4.30
136 137 2.363018 CCCTCTCCTGCTGACGGA 60.363 66.667 0.00 0.00 0.00 4.69
137 138 4.154347 GCCCTCTCCTGCTGACGG 62.154 72.222 0.00 0.00 0.00 4.79
138 139 4.504916 CGCCCTCTCCTGCTGACG 62.505 72.222 0.00 0.00 0.00 4.35
139 140 3.071206 TCGCCCTCTCCTGCTGAC 61.071 66.667 0.00 0.00 0.00 3.51
140 141 2.757508 CTCGCCCTCTCCTGCTGA 60.758 66.667 0.00 0.00 0.00 4.26
141 142 3.847602 CCTCGCCCTCTCCTGCTG 61.848 72.222 0.00 0.00 0.00 4.41
142 143 3.608759 TTCCTCGCCCTCTCCTGCT 62.609 63.158 0.00 0.00 0.00 4.24
143 144 3.077556 TTCCTCGCCCTCTCCTGC 61.078 66.667 0.00 0.00 0.00 4.85
144 145 3.087666 GCTTCCTCGCCCTCTCCTG 62.088 68.421 0.00 0.00 0.00 3.86
145 146 2.762043 GCTTCCTCGCCCTCTCCT 60.762 66.667 0.00 0.00 0.00 3.69
146 147 3.077556 TGCTTCCTCGCCCTCTCC 61.078 66.667 0.00 0.00 0.00 3.71
147 148 2.185608 GTGCTTCCTCGCCCTCTC 59.814 66.667 0.00 0.00 0.00 3.20
148 149 3.394836 GGTGCTTCCTCGCCCTCT 61.395 66.667 0.00 0.00 0.00 3.69
149 150 1.686325 TATGGTGCTTCCTCGCCCTC 61.686 60.000 0.80 0.00 35.81 4.30
150 151 1.271840 TTATGGTGCTTCCTCGCCCT 61.272 55.000 0.80 0.00 35.81 5.19
151 152 0.815615 CTTATGGTGCTTCCTCGCCC 60.816 60.000 0.80 0.00 35.81 6.13
152 153 0.815615 CCTTATGGTGCTTCCTCGCC 60.816 60.000 0.80 0.00 37.07 5.54
153 154 0.178068 TCCTTATGGTGCTTCCTCGC 59.822 55.000 0.00 0.00 37.07 5.03
154 155 1.808133 GCTCCTTATGGTGCTTCCTCG 60.808 57.143 13.01 0.00 46.18 4.63
155 156 1.960417 GCTCCTTATGGTGCTTCCTC 58.040 55.000 13.01 0.00 46.18 3.71
162 163 3.006859 TCCATCGTATGCTCCTTATGGTG 59.993 47.826 0.00 0.00 36.19 4.17
163 164 3.239449 TCCATCGTATGCTCCTTATGGT 58.761 45.455 0.00 0.00 36.19 3.55
164 165 3.854666 CTCCATCGTATGCTCCTTATGG 58.145 50.000 0.00 0.00 36.11 2.74
165 166 3.257393 GCTCCATCGTATGCTCCTTATG 58.743 50.000 0.00 0.00 0.00 1.90
166 167 2.094494 CGCTCCATCGTATGCTCCTTAT 60.094 50.000 0.00 0.00 0.00 1.73
167 168 1.269723 CGCTCCATCGTATGCTCCTTA 59.730 52.381 0.00 0.00 0.00 2.69
168 169 0.032678 CGCTCCATCGTATGCTCCTT 59.967 55.000 0.00 0.00 0.00 3.36
169 170 1.662608 CGCTCCATCGTATGCTCCT 59.337 57.895 0.00 0.00 0.00 3.69
170 171 1.373497 CCGCTCCATCGTATGCTCC 60.373 63.158 0.00 0.00 0.00 4.70
171 172 2.024319 GCCGCTCCATCGTATGCTC 61.024 63.158 0.00 0.00 0.00 4.26
172 173 2.029666 GCCGCTCCATCGTATGCT 59.970 61.111 0.00 0.00 0.00 3.79
173 174 1.669115 ATGCCGCTCCATCGTATGC 60.669 57.895 0.00 0.00 0.00 3.14
174 175 0.319813 TCATGCCGCTCCATCGTATG 60.320 55.000 0.00 0.00 0.00 2.39
175 176 0.610174 ATCATGCCGCTCCATCGTAT 59.390 50.000 0.00 0.00 0.00 3.06
176 177 1.253100 TATCATGCCGCTCCATCGTA 58.747 50.000 0.00 0.00 0.00 3.43
177 178 0.610174 ATATCATGCCGCTCCATCGT 59.390 50.000 0.00 0.00 0.00 3.73
178 179 1.004595 CATATCATGCCGCTCCATCG 58.995 55.000 0.00 0.00 0.00 3.84
189 190 1.492873 CCGGCGAACGCATATCATG 59.507 57.895 20.16 0.00 44.11 3.07
190 191 2.317609 GCCGGCGAACGCATATCAT 61.318 57.895 12.58 0.00 44.11 2.45
191 192 2.964925 GCCGGCGAACGCATATCA 60.965 61.111 12.58 0.00 44.11 2.15
192 193 2.661866 AGCCGGCGAACGCATATC 60.662 61.111 23.20 6.68 44.11 1.63
193 194 2.967076 CAGCCGGCGAACGCATAT 60.967 61.111 23.20 0.00 44.11 1.78
194 195 4.444838 ACAGCCGGCGAACGCATA 62.445 61.111 23.20 0.00 44.11 3.14
204 205 3.072468 TTACCCCTCGACAGCCGG 61.072 66.667 0.00 0.00 39.14 6.13
205 206 2.494918 CTTACCCCTCGACAGCCG 59.505 66.667 0.00 0.00 40.25 5.52
206 207 2.180159 TTGCTTACCCCTCGACAGCC 62.180 60.000 0.00 0.00 0.00 4.85
207 208 1.019805 GTTGCTTACCCCTCGACAGC 61.020 60.000 0.00 0.00 0.00 4.40
208 209 0.391263 GGTTGCTTACCCCTCGACAG 60.391 60.000 0.00 0.00 41.43 3.51
209 210 1.675219 GGTTGCTTACCCCTCGACA 59.325 57.895 0.00 0.00 41.43 4.35
210 211 4.611961 GGTTGCTTACCCCTCGAC 57.388 61.111 0.00 0.00 41.43 4.20
217 218 0.960861 GTGCCTCTGGGTTGCTTACC 60.961 60.000 0.43 0.43 46.99 2.85
218 219 0.960861 GGTGCCTCTGGGTTGCTTAC 60.961 60.000 0.00 0.00 34.45 2.34
219 220 1.378762 GGTGCCTCTGGGTTGCTTA 59.621 57.895 0.00 0.00 34.45 3.09
220 221 2.116125 GGTGCCTCTGGGTTGCTT 59.884 61.111 0.00 0.00 34.45 3.91
221 222 3.177884 TGGTGCCTCTGGGTTGCT 61.178 61.111 0.00 0.00 34.45 3.91
222 223 2.124507 TACTGGTGCCTCTGGGTTGC 62.125 60.000 0.00 0.00 34.45 4.17
223 224 0.620556 ATACTGGTGCCTCTGGGTTG 59.379 55.000 0.00 0.00 34.45 3.77
224 225 0.620556 CATACTGGTGCCTCTGGGTT 59.379 55.000 0.00 0.00 34.45 4.11
225 226 1.915078 GCATACTGGTGCCTCTGGGT 61.915 60.000 0.00 0.00 39.18 4.51
226 227 1.153086 GCATACTGGTGCCTCTGGG 60.153 63.158 0.00 0.00 39.18 4.45
227 228 0.463295 CTGCATACTGGTGCCTCTGG 60.463 60.000 5.11 0.00 44.43 3.86
228 229 0.538584 TCTGCATACTGGTGCCTCTG 59.461 55.000 5.11 0.00 44.43 3.35
229 230 0.539051 GTCTGCATACTGGTGCCTCT 59.461 55.000 0.00 0.00 44.43 3.69
230 231 0.807667 CGTCTGCATACTGGTGCCTC 60.808 60.000 0.40 0.00 44.43 4.70
231 232 1.219124 CGTCTGCATACTGGTGCCT 59.781 57.895 0.40 0.00 44.43 4.75
232 233 0.391130 TTCGTCTGCATACTGGTGCC 60.391 55.000 0.40 0.00 44.43 5.01
233 234 1.394917 CTTTCGTCTGCATACTGGTGC 59.605 52.381 0.40 1.01 45.25 5.01
234 235 1.394917 GCTTTCGTCTGCATACTGGTG 59.605 52.381 0.40 0.00 0.00 4.17
235 236 1.676014 GGCTTTCGTCTGCATACTGGT 60.676 52.381 0.40 0.00 0.00 4.00
236 237 1.009829 GGCTTTCGTCTGCATACTGG 58.990 55.000 0.40 0.00 0.00 4.00
237 238 1.662629 CTGGCTTTCGTCTGCATACTG 59.337 52.381 0.40 0.00 0.00 2.74
238 239 1.406069 CCTGGCTTTCGTCTGCATACT 60.406 52.381 0.40 0.00 0.00 2.12
239 240 1.009829 CCTGGCTTTCGTCTGCATAC 58.990 55.000 0.00 0.00 0.00 2.39
240 241 0.613260 ACCTGGCTTTCGTCTGCATA 59.387 50.000 0.00 0.00 0.00 3.14
241 242 0.250901 AACCTGGCTTTCGTCTGCAT 60.251 50.000 0.00 0.00 0.00 3.96
242 243 1.148273 AACCTGGCTTTCGTCTGCA 59.852 52.632 0.00 0.00 0.00 4.41
243 244 1.576421 CAACCTGGCTTTCGTCTGC 59.424 57.895 0.00 0.00 0.00 4.26
244 245 1.576421 GCAACCTGGCTTTCGTCTG 59.424 57.895 0.00 0.00 0.00 3.51
245 246 1.600916 GGCAACCTGGCTTTCGTCT 60.601 57.895 0.00 0.00 40.14 4.18
246 247 1.452145 TTGGCAACCTGGCTTTCGTC 61.452 55.000 0.00 0.00 44.10 4.20
247 248 1.454847 TTGGCAACCTGGCTTTCGT 60.455 52.632 0.00 0.00 44.10 3.85
248 249 1.286880 CTTGGCAACCTGGCTTTCG 59.713 57.895 0.00 0.00 44.10 3.46
249 250 1.005748 GCTTGGCAACCTGGCTTTC 60.006 57.895 0.00 0.00 44.10 2.62
250 251 1.761667 TGCTTGGCAACCTGGCTTT 60.762 52.632 10.06 0.00 44.10 3.51
251 252 2.123338 TGCTTGGCAACCTGGCTT 60.123 55.556 10.06 0.00 44.10 4.35
252 253 2.914097 GTGCTTGGCAACCTGGCT 60.914 61.111 10.06 0.00 44.10 4.75
253 254 3.994853 GGTGCTTGGCAACCTGGC 61.995 66.667 0.00 0.00 40.86 4.85
254 255 3.673484 CGGTGCTTGGCAACCTGG 61.673 66.667 0.00 0.00 44.30 4.45
255 256 3.673484 CCGGTGCTTGGCAACCTG 61.673 66.667 0.00 0.00 44.30 4.00
256 257 4.204028 ACCGGTGCTTGGCAACCT 62.204 61.111 6.12 0.00 44.30 3.50
257 258 3.977244 CACCGGTGCTTGGCAACC 61.977 66.667 24.02 0.00 44.30 3.77
258 259 1.241315 ATACACCGGTGCTTGGCAAC 61.241 55.000 34.26 0.00 43.63 4.17
259 260 0.538516 AATACACCGGTGCTTGGCAA 60.539 50.000 34.26 11.33 41.47 4.52
260 261 0.538516 AAATACACCGGTGCTTGGCA 60.539 50.000 34.26 12.78 35.60 4.92
261 262 1.455248 TAAATACACCGGTGCTTGGC 58.545 50.000 34.26 0.00 0.00 4.52
262 263 5.821516 TTATTAAATACACCGGTGCTTGG 57.178 39.130 34.26 11.24 0.00 3.61
263 264 7.219917 CACATTTATTAAATACACCGGTGCTTG 59.780 37.037 34.26 11.74 0.00 4.01
264 265 7.254852 CACATTTATTAAATACACCGGTGCTT 58.745 34.615 34.26 24.88 0.00 3.91
265 266 6.679392 GCACATTTATTAAATACACCGGTGCT 60.679 38.462 34.26 22.43 38.85 4.40
266 267 5.457473 GCACATTTATTAAATACACCGGTGC 59.543 40.000 34.26 17.17 36.68 5.01
267 268 6.556212 TGCACATTTATTAAATACACCGGTG 58.444 36.000 32.83 32.83 0.00 4.94
268 269 6.761099 TGCACATTTATTAAATACACCGGT 57.239 33.333 0.00 0.00 0.00 5.28
269 270 6.640499 CCATGCACATTTATTAAATACACCGG 59.360 38.462 0.00 0.00 0.00 5.28
270 271 6.143758 GCCATGCACATTTATTAAATACACCG 59.856 38.462 1.41 0.00 0.00 4.94
271 272 6.983307 TGCCATGCACATTTATTAAATACACC 59.017 34.615 1.41 0.00 31.71 4.16
272 273 8.592105 ATGCCATGCACATTTATTAAATACAC 57.408 30.769 1.41 0.00 43.04 2.90
285 286 9.999660 TGATTTTTATTAATATGCCATGCACAT 57.000 25.926 0.00 5.01 43.04 3.21
286 287 9.828039 TTGATTTTTATTAATATGCCATGCACA 57.172 25.926 0.00 0.00 43.04 4.57
369 370 9.713713 TGATCAATTTTCAAACACATGATGATT 57.286 25.926 0.00 0.00 29.80 2.57
370 371 9.884636 ATGATCAATTTTCAAACACATGATGAT 57.115 25.926 0.00 0.00 31.41 2.45
371 372 9.361315 GATGATCAATTTTCAAACACATGATGA 57.639 29.630 0.00 0.00 0.00 2.92
372 373 8.318167 CGATGATCAATTTTCAAACACATGATG 58.682 33.333 0.00 0.00 0.00 3.07
373 374 8.245491 TCGATGATCAATTTTCAAACACATGAT 58.755 29.630 0.00 0.00 0.00 2.45
374 375 7.592051 TCGATGATCAATTTTCAAACACATGA 58.408 30.769 0.00 0.00 0.00 3.07
375 376 7.539710 ACTCGATGATCAATTTTCAAACACATG 59.460 33.333 0.00 0.00 0.00 3.21
376 377 7.596494 ACTCGATGATCAATTTTCAAACACAT 58.404 30.769 0.00 0.00 0.00 3.21
377 378 6.969366 ACTCGATGATCAATTTTCAAACACA 58.031 32.000 0.00 0.00 0.00 3.72
378 379 9.559958 AATACTCGATGATCAATTTTCAAACAC 57.440 29.630 0.00 0.00 0.00 3.32
392 393 9.702726 CGTTGAACATTTTTAATACTCGATGAT 57.297 29.630 0.00 0.00 0.00 2.45
393 394 8.714179 ACGTTGAACATTTTTAATACTCGATGA 58.286 29.630 0.00 0.00 0.00 2.92
394 395 8.874745 ACGTTGAACATTTTTAATACTCGATG 57.125 30.769 0.00 0.00 0.00 3.84
405 406 9.612620 TTTTTGCAAAATACGTTGAACATTTTT 57.387 22.222 24.39 0.55 31.27 1.94
406 407 9.271738 CTTTTTGCAAAATACGTTGAACATTTT 57.728 25.926 24.39 0.00 33.31 1.82
407 408 7.427895 GCTTTTTGCAAAATACGTTGAACATTT 59.572 29.630 24.39 0.00 42.31 2.32
408 409 6.904543 GCTTTTTGCAAAATACGTTGAACATT 59.095 30.769 24.39 0.00 42.31 2.71
409 410 6.418141 GCTTTTTGCAAAATACGTTGAACAT 58.582 32.000 24.39 0.00 42.31 2.71
410 411 5.790547 GCTTTTTGCAAAATACGTTGAACA 58.209 33.333 24.39 5.54 42.31 3.18
425 426 6.529829 TCAAATATACGGTGAATGCTTTTTGC 59.470 34.615 0.00 0.00 43.25 3.68
426 427 8.459521 TTCAAATATACGGTGAATGCTTTTTG 57.540 30.769 0.00 0.00 0.00 2.44
427 428 9.139174 CTTTCAAATATACGGTGAATGCTTTTT 57.861 29.630 0.00 0.00 31.66 1.94
428 429 8.519526 TCTTTCAAATATACGGTGAATGCTTTT 58.480 29.630 0.00 0.00 31.66 2.27
429 430 8.050778 TCTTTCAAATATACGGTGAATGCTTT 57.949 30.769 0.00 0.00 31.66 3.51
430 431 7.624360 TCTTTCAAATATACGGTGAATGCTT 57.376 32.000 0.00 0.00 31.66 3.91
431 432 7.283127 ACATCTTTCAAATATACGGTGAATGCT 59.717 33.333 0.00 0.00 31.66 3.79
432 433 7.417612 ACATCTTTCAAATATACGGTGAATGC 58.582 34.615 0.00 0.00 31.66 3.56
452 453 9.753674 TGAGGGAAATTTTCTACATTAACATCT 57.246 29.630 8.93 0.00 0.00 2.90
487 488 8.814235 CGGCGACTCTTTTATTCTTCTTTAATA 58.186 33.333 0.00 0.00 0.00 0.98
488 489 7.333672 ACGGCGACTCTTTTATTCTTCTTTAAT 59.666 33.333 16.62 0.00 0.00 1.40
489 490 6.647895 ACGGCGACTCTTTTATTCTTCTTTAA 59.352 34.615 16.62 0.00 0.00 1.52
490 491 6.090358 CACGGCGACTCTTTTATTCTTCTTTA 59.910 38.462 16.62 0.00 0.00 1.85
491 492 4.995487 ACGGCGACTCTTTTATTCTTCTTT 59.005 37.500 16.62 0.00 0.00 2.52
492 493 4.389077 CACGGCGACTCTTTTATTCTTCTT 59.611 41.667 16.62 0.00 0.00 2.52
493 494 3.927142 CACGGCGACTCTTTTATTCTTCT 59.073 43.478 16.62 0.00 0.00 2.85
494 495 3.678548 ACACGGCGACTCTTTTATTCTTC 59.321 43.478 16.62 0.00 0.00 2.87
495 496 3.660865 ACACGGCGACTCTTTTATTCTT 58.339 40.909 16.62 0.00 0.00 2.52
496 497 3.314541 ACACGGCGACTCTTTTATTCT 57.685 42.857 16.62 0.00 0.00 2.40
497 498 4.400036 AAACACGGCGACTCTTTTATTC 57.600 40.909 16.62 0.00 0.00 1.75
498 499 5.927954 TTAAACACGGCGACTCTTTTATT 57.072 34.783 16.62 0.00 0.00 1.40
499 500 5.927954 TTTAAACACGGCGACTCTTTTAT 57.072 34.783 16.62 0.00 0.00 1.40
500 501 5.731599 TTTTAAACACGGCGACTCTTTTA 57.268 34.783 16.62 6.49 0.00 1.52
501 502 4.619437 TTTTAAACACGGCGACTCTTTT 57.381 36.364 16.62 7.48 0.00 2.27
502 503 4.619437 TTTTTAAACACGGCGACTCTTT 57.381 36.364 16.62 7.44 0.00 2.52
503 504 4.823790 ATTTTTAAACACGGCGACTCTT 57.176 36.364 16.62 3.63 0.00 2.85
504 505 4.035909 ACAATTTTTAAACACGGCGACTCT 59.964 37.500 16.62 0.00 0.00 3.24
505 506 4.284485 ACAATTTTTAAACACGGCGACTC 58.716 39.130 16.62 0.00 0.00 3.36
506 507 4.295857 ACAATTTTTAAACACGGCGACT 57.704 36.364 16.62 0.00 0.00 4.18
507 508 4.499758 TGAACAATTTTTAAACACGGCGAC 59.500 37.500 16.62 0.00 0.00 5.19
508 509 4.669318 TGAACAATTTTTAAACACGGCGA 58.331 34.783 16.62 0.00 0.00 5.54
509 510 5.376947 TTGAACAATTTTTAAACACGGCG 57.623 34.783 4.80 4.80 0.00 6.46
510 511 6.626882 CACATTGAACAATTTTTAAACACGGC 59.373 34.615 0.00 0.00 0.00 5.68
511 512 7.680062 ACACATTGAACAATTTTTAAACACGG 58.320 30.769 0.00 0.00 0.00 4.94
539 540 9.654663 TCCTTTTCGTTTTGGAAGATTTTTAAA 57.345 25.926 0.00 0.00 0.00 1.52
540 541 9.654663 TTCCTTTTCGTTTTGGAAGATTTTTAA 57.345 25.926 0.00 0.00 34.11 1.52
541 542 9.654663 TTTCCTTTTCGTTTTGGAAGATTTTTA 57.345 25.926 0.00 0.00 39.39 1.52
542 543 8.554835 TTTCCTTTTCGTTTTGGAAGATTTTT 57.445 26.923 0.00 0.00 39.39 1.94
543 544 8.554835 TTTTCCTTTTCGTTTTGGAAGATTTT 57.445 26.923 0.00 0.00 39.39 1.82
544 545 8.731275 ATTTTCCTTTTCGTTTTGGAAGATTT 57.269 26.923 0.00 0.00 39.39 2.17
545 546 8.731275 AATTTTCCTTTTCGTTTTGGAAGATT 57.269 26.923 0.00 0.00 39.39 2.40
546 547 8.731275 AAATTTTCCTTTTCGTTTTGGAAGAT 57.269 26.923 0.00 0.00 39.39 2.40
547 548 9.654663 TTAAATTTTCCTTTTCGTTTTGGAAGA 57.345 25.926 0.00 0.00 39.39 2.87
550 551 9.438228 ACTTTAAATTTTCCTTTTCGTTTTGGA 57.562 25.926 0.00 0.00 0.00 3.53
608 609 6.811665 CGTTTTCTCCCTTTCAGTTTCTTTTT 59.188 34.615 0.00 0.00 0.00 1.94
609 610 6.071560 ACGTTTTCTCCCTTTCAGTTTCTTTT 60.072 34.615 0.00 0.00 0.00 2.27
610 611 5.417894 ACGTTTTCTCCCTTTCAGTTTCTTT 59.582 36.000 0.00 0.00 0.00 2.52
611 612 4.948004 ACGTTTTCTCCCTTTCAGTTTCTT 59.052 37.500 0.00 0.00 0.00 2.52
612 613 4.335594 CACGTTTTCTCCCTTTCAGTTTCT 59.664 41.667 0.00 0.00 0.00 2.52
613 614 4.334481 TCACGTTTTCTCCCTTTCAGTTTC 59.666 41.667 0.00 0.00 0.00 2.78
614 615 4.266714 TCACGTTTTCTCCCTTTCAGTTT 58.733 39.130 0.00 0.00 0.00 2.66
615 616 3.881220 TCACGTTTTCTCCCTTTCAGTT 58.119 40.909 0.00 0.00 0.00 3.16
616 617 3.553828 TCACGTTTTCTCCCTTTCAGT 57.446 42.857 0.00 0.00 0.00 3.41
617 618 4.893424 TTTCACGTTTTCTCCCTTTCAG 57.107 40.909 0.00 0.00 0.00 3.02
618 619 4.459685 TGTTTTCACGTTTTCTCCCTTTCA 59.540 37.500 0.00 0.00 0.00 2.69
619 620 4.989044 TGTTTTCACGTTTTCTCCCTTTC 58.011 39.130 0.00 0.00 0.00 2.62
620 621 5.394224 TTGTTTTCACGTTTTCTCCCTTT 57.606 34.783 0.00 0.00 0.00 3.11
621 622 5.394224 TTTGTTTTCACGTTTTCTCCCTT 57.606 34.783 0.00 0.00 0.00 3.95
622 623 5.394224 TTTTGTTTTCACGTTTTCTCCCT 57.606 34.783 0.00 0.00 0.00 4.20
623 624 5.636121 AGTTTTTGTTTTCACGTTTTCTCCC 59.364 36.000 0.00 0.00 0.00 4.30
624 625 6.400621 CCAGTTTTTGTTTTCACGTTTTCTCC 60.401 38.462 0.00 0.00 0.00 3.71
625 626 6.363896 TCCAGTTTTTGTTTTCACGTTTTCTC 59.636 34.615 0.00 0.00 0.00 2.87
626 627 6.217294 TCCAGTTTTTGTTTTCACGTTTTCT 58.783 32.000 0.00 0.00 0.00 2.52
627 628 6.455045 TCCAGTTTTTGTTTTCACGTTTTC 57.545 33.333 0.00 0.00 0.00 2.29
628 629 6.846325 TTCCAGTTTTTGTTTTCACGTTTT 57.154 29.167 0.00 0.00 0.00 2.43
629 630 6.647067 TCATTCCAGTTTTTGTTTTCACGTTT 59.353 30.769 0.00 0.00 0.00 3.60
630 631 6.159988 TCATTCCAGTTTTTGTTTTCACGTT 58.840 32.000 0.00 0.00 0.00 3.99
631 632 5.715070 TCATTCCAGTTTTTGTTTTCACGT 58.285 33.333 0.00 0.00 0.00 4.49
632 633 6.639671 TTCATTCCAGTTTTTGTTTTCACG 57.360 33.333 0.00 0.00 0.00 4.35
633 634 9.112789 GTTTTTCATTCCAGTTTTTGTTTTCAC 57.887 29.630 0.00 0.00 0.00 3.18
634 635 8.293157 GGTTTTTCATTCCAGTTTTTGTTTTCA 58.707 29.630 0.00 0.00 0.00 2.69
635 636 8.293157 TGGTTTTTCATTCCAGTTTTTGTTTTC 58.707 29.630 0.00 0.00 0.00 2.29
636 637 8.171164 TGGTTTTTCATTCCAGTTTTTGTTTT 57.829 26.923 0.00 0.00 0.00 2.43
637 638 7.751768 TGGTTTTTCATTCCAGTTTTTGTTT 57.248 28.000 0.00 0.00 0.00 2.83
638 639 7.751768 TTGGTTTTTCATTCCAGTTTTTGTT 57.248 28.000 0.00 0.00 32.63 2.83
639 640 7.751768 TTTGGTTTTTCATTCCAGTTTTTGT 57.248 28.000 0.00 0.00 32.63 2.83
640 641 7.639461 CGATTTGGTTTTTCATTCCAGTTTTTG 59.361 33.333 0.00 0.00 32.63 2.44
641 642 7.550906 TCGATTTGGTTTTTCATTCCAGTTTTT 59.449 29.630 0.00 0.00 32.63 1.94
642 643 7.044798 TCGATTTGGTTTTTCATTCCAGTTTT 58.955 30.769 0.00 0.00 32.63 2.43
643 644 6.578023 TCGATTTGGTTTTTCATTCCAGTTT 58.422 32.000 0.00 0.00 32.63 2.66
644 645 6.155475 TCGATTTGGTTTTTCATTCCAGTT 57.845 33.333 0.00 0.00 32.63 3.16
645 646 5.782893 TCGATTTGGTTTTTCATTCCAGT 57.217 34.783 0.00 0.00 32.63 4.00
646 647 7.010923 TGTTTTCGATTTGGTTTTTCATTCCAG 59.989 33.333 0.00 0.00 32.63 3.86
647 648 6.818644 TGTTTTCGATTTGGTTTTTCATTCCA 59.181 30.769 0.00 0.00 0.00 3.53
648 649 7.223777 TCTGTTTTCGATTTGGTTTTTCATTCC 59.776 33.333 0.00 0.00 0.00 3.01
649 650 8.125728 TCTGTTTTCGATTTGGTTTTTCATTC 57.874 30.769 0.00 0.00 0.00 2.67
650 651 8.485976 TTCTGTTTTCGATTTGGTTTTTCATT 57.514 26.923 0.00 0.00 0.00 2.57
651 652 8.485976 TTTCTGTTTTCGATTTGGTTTTTCAT 57.514 26.923 0.00 0.00 0.00 2.57
652 653 7.891183 TTTCTGTTTTCGATTTGGTTTTTCA 57.109 28.000 0.00 0.00 0.00 2.69
653 654 7.690637 GGTTTTCTGTTTTCGATTTGGTTTTTC 59.309 33.333 0.00 0.00 0.00 2.29
654 655 7.361371 GGGTTTTCTGTTTTCGATTTGGTTTTT 60.361 33.333 0.00 0.00 0.00 1.94
655 656 6.092944 GGGTTTTCTGTTTTCGATTTGGTTTT 59.907 34.615 0.00 0.00 0.00 2.43
656 657 5.583061 GGGTTTTCTGTTTTCGATTTGGTTT 59.417 36.000 0.00 0.00 0.00 3.27
657 658 5.113383 GGGTTTTCTGTTTTCGATTTGGTT 58.887 37.500 0.00 0.00 0.00 3.67
658 659 4.160626 TGGGTTTTCTGTTTTCGATTTGGT 59.839 37.500 0.00 0.00 0.00 3.67
659 660 4.688021 TGGGTTTTCTGTTTTCGATTTGG 58.312 39.130 0.00 0.00 0.00 3.28
660 661 5.578727 TGTTGGGTTTTCTGTTTTCGATTTG 59.421 36.000 0.00 0.00 0.00 2.32
661 662 5.725362 TGTTGGGTTTTCTGTTTTCGATTT 58.275 33.333 0.00 0.00 0.00 2.17
662 663 5.331876 TGTTGGGTTTTCTGTTTTCGATT 57.668 34.783 0.00 0.00 0.00 3.34
663 664 4.993029 TGTTGGGTTTTCTGTTTTCGAT 57.007 36.364 0.00 0.00 0.00 3.59
664 665 4.459685 TCTTGTTGGGTTTTCTGTTTTCGA 59.540 37.500 0.00 0.00 0.00 3.71
665 666 4.739195 TCTTGTTGGGTTTTCTGTTTTCG 58.261 39.130 0.00 0.00 0.00 3.46
666 667 7.172532 AGTTTTCTTGTTGGGTTTTCTGTTTTC 59.827 33.333 0.00 0.00 0.00 2.29
667 668 6.995686 AGTTTTCTTGTTGGGTTTTCTGTTTT 59.004 30.769 0.00 0.00 0.00 2.43
668 669 6.426633 CAGTTTTCTTGTTGGGTTTTCTGTTT 59.573 34.615 0.00 0.00 0.00 2.83
669 670 5.931724 CAGTTTTCTTGTTGGGTTTTCTGTT 59.068 36.000 0.00 0.00 0.00 3.16
670 671 5.478407 CAGTTTTCTTGTTGGGTTTTCTGT 58.522 37.500 0.00 0.00 0.00 3.41
671 672 4.869861 CCAGTTTTCTTGTTGGGTTTTCTG 59.130 41.667 0.00 0.00 0.00 3.02
672 673 4.622933 GCCAGTTTTCTTGTTGGGTTTTCT 60.623 41.667 0.00 0.00 0.00 2.52
673 674 3.621268 GCCAGTTTTCTTGTTGGGTTTTC 59.379 43.478 0.00 0.00 0.00 2.29
674 675 3.605634 GCCAGTTTTCTTGTTGGGTTTT 58.394 40.909 0.00 0.00 0.00 2.43
675 676 2.093181 GGCCAGTTTTCTTGTTGGGTTT 60.093 45.455 0.00 0.00 0.00 3.27
676 677 1.484653 GGCCAGTTTTCTTGTTGGGTT 59.515 47.619 0.00 0.00 0.00 4.11
677 678 1.119684 GGCCAGTTTTCTTGTTGGGT 58.880 50.000 0.00 0.00 0.00 4.51
678 679 0.392706 GGGCCAGTTTTCTTGTTGGG 59.607 55.000 4.39 0.00 0.00 4.12
679 680 1.413118 AGGGCCAGTTTTCTTGTTGG 58.587 50.000 6.18 0.00 0.00 3.77
680 681 3.243737 GGTAAGGGCCAGTTTTCTTGTTG 60.244 47.826 6.18 0.00 0.00 3.33
681 682 2.963101 GGTAAGGGCCAGTTTTCTTGTT 59.037 45.455 6.18 0.00 0.00 2.83
682 683 2.177016 AGGTAAGGGCCAGTTTTCTTGT 59.823 45.455 6.18 0.00 0.00 3.16
683 684 2.558359 CAGGTAAGGGCCAGTTTTCTTG 59.442 50.000 6.18 0.00 0.00 3.02
684 685 2.490902 CCAGGTAAGGGCCAGTTTTCTT 60.491 50.000 6.18 0.00 0.00 2.52
685 686 1.075536 CCAGGTAAGGGCCAGTTTTCT 59.924 52.381 6.18 0.00 0.00 2.52
686 687 1.074889 TCCAGGTAAGGGCCAGTTTTC 59.925 52.381 6.18 0.00 0.00 2.29
687 688 1.154430 TCCAGGTAAGGGCCAGTTTT 58.846 50.000 6.18 0.00 0.00 2.43
688 689 0.404426 GTCCAGGTAAGGGCCAGTTT 59.596 55.000 6.18 0.00 0.00 2.66
689 690 1.838073 CGTCCAGGTAAGGGCCAGTT 61.838 60.000 6.18 0.00 0.00 3.16
690 691 2.291043 CGTCCAGGTAAGGGCCAGT 61.291 63.158 6.18 0.00 0.00 4.00
691 692 2.584608 CGTCCAGGTAAGGGCCAG 59.415 66.667 6.18 0.00 0.00 4.85
692 693 3.006728 CCGTCCAGGTAAGGGCCA 61.007 66.667 6.18 0.00 34.51 5.36
693 694 2.686106 TCCGTCCAGGTAAGGGCC 60.686 66.667 0.00 0.00 41.99 5.80
694 695 1.677637 CTCTCCGTCCAGGTAAGGGC 61.678 65.000 0.00 0.00 41.99 5.19
695 696 1.677637 GCTCTCCGTCCAGGTAAGGG 61.678 65.000 0.00 0.00 41.99 3.95
696 697 0.684805 AGCTCTCCGTCCAGGTAAGG 60.685 60.000 0.00 0.00 41.99 2.69
697 698 1.677052 GTAGCTCTCCGTCCAGGTAAG 59.323 57.143 0.00 0.00 41.99 2.34
700 701 0.966370 GTGTAGCTCTCCGTCCAGGT 60.966 60.000 0.00 0.00 41.99 4.00
731 732 3.414700 GCCGTTCACGTGCTCCAG 61.415 66.667 11.67 0.00 37.74 3.86
769 770 2.079158 AGGATCAAATCACACACGCAG 58.921 47.619 0.00 0.00 0.00 5.18
806 807 2.827322 TGATTTGGTTTCATGAGCTGGG 59.173 45.455 0.00 0.00 0.00 4.45
832 833 4.478699 TCGTGTTTTACTGTAGGACATCG 58.521 43.478 8.07 11.59 0.00 3.84
964 982 4.479056 TGTATCTGTAGTCTCCTCTCCCTT 59.521 45.833 0.00 0.00 0.00 3.95
966 984 4.440826 TGTATCTGTAGTCTCCTCTCCC 57.559 50.000 0.00 0.00 0.00 4.30
967 985 6.653320 CAGTATGTATCTGTAGTCTCCTCTCC 59.347 46.154 0.00 0.00 0.00 3.71
972 990 7.446769 TCTCTCAGTATGTATCTGTAGTCTCC 58.553 42.308 0.00 0.00 37.40 3.71
1005 1025 1.185618 TCACCTGACCAGTAAGCGCT 61.186 55.000 2.64 2.64 0.00 5.92
1038 1058 0.322187 TAAAGCCGAACCCCTTGCTC 60.322 55.000 0.00 0.00 32.62 4.26
1040 1060 0.738975 GATAAAGCCGAACCCCTTGC 59.261 55.000 0.00 0.00 0.00 4.01
1092 1112 0.179215 CAACGATTGCCGAGAAGTGC 60.179 55.000 0.00 0.00 41.76 4.40
1109 1129 1.959226 GTCTTGAAGCCGGCGTCAA 60.959 57.895 41.65 41.65 40.86 3.18
1112 1132 4.699522 GGGTCTTGAAGCCGGCGT 62.700 66.667 23.20 20.21 35.40 5.68
1157 1177 0.727793 TTTTGCGCCGCTTTCGATTC 60.728 50.000 11.67 0.00 38.10 2.52
1254 1282 0.400213 TTGGACTCCATTTGCTCGGT 59.600 50.000 0.00 0.00 31.53 4.69
1288 1324 7.360113 ACACAAACAAATAACAATCCTTCCT 57.640 32.000 0.00 0.00 0.00 3.36
1299 1336 9.126151 TGGTGAGAATAGAACACAAACAAATAA 57.874 29.630 0.00 0.00 36.42 1.40
1362 1402 9.950680 GTGTAGATTTGATGTGAAAAGAAAAGA 57.049 29.630 0.00 0.00 0.00 2.52
1373 1413 6.677781 ATTAACCCGTGTAGATTTGATGTG 57.322 37.500 0.00 0.00 0.00 3.21
1559 1737 2.528743 CGCACGGGCATTGCTCTAG 61.529 63.158 11.77 0.00 41.24 2.43
1561 1739 4.704833 ACGCACGGGCATTGCTCT 62.705 61.111 11.77 0.00 41.24 4.09
1562 1740 3.737172 AACGCACGGGCATTGCTC 61.737 61.111 11.77 2.91 41.24 4.26
1565 1743 3.837908 TTGCAACGCACGGGCATTG 62.838 57.895 15.24 15.24 45.48 2.82
1567 1745 4.341502 GTTGCAACGCACGGGCAT 62.342 61.111 14.90 0.00 38.71 4.40
1577 1755 9.216117 ACTAGAATATTTATATCCCGTTGCAAC 57.784 33.333 19.89 19.89 0.00 4.17
1579 1757 9.865321 GTACTAGAATATTTATATCCCGTTGCA 57.135 33.333 0.00 0.00 0.00 4.08
1599 2535 7.169308 CGGGTAATTCACAAGCTAATGTACTAG 59.831 40.741 0.00 0.00 30.84 2.57
1605 2541 4.634004 TGACGGGTAATTCACAAGCTAATG 59.366 41.667 0.00 0.00 0.00 1.90
1607 2543 4.274602 TGACGGGTAATTCACAAGCTAA 57.725 40.909 0.00 0.00 0.00 3.09
1608 2544 3.965379 TGACGGGTAATTCACAAGCTA 57.035 42.857 0.00 0.00 0.00 3.32
1609 2545 2.851263 TGACGGGTAATTCACAAGCT 57.149 45.000 0.00 0.00 0.00 3.74
1612 2548 9.179909 ACATTATTATTGACGGGTAATTCACAA 57.820 29.630 0.00 0.00 0.00 3.33
1613 2549 8.616942 CACATTATTATTGACGGGTAATTCACA 58.383 33.333 0.00 0.00 0.00 3.58
1615 2551 8.966069 TCACATTATTATTGACGGGTAATTCA 57.034 30.769 0.00 0.00 0.00 2.57
1618 2554 9.349713 ACAATCACATTATTATTGACGGGTAAT 57.650 29.630 0.00 0.00 35.18 1.89
1619 2555 8.616942 CACAATCACATTATTATTGACGGGTAA 58.383 33.333 0.00 0.00 35.18 2.85
1621 2557 6.601613 ACACAATCACATTATTATTGACGGGT 59.398 34.615 0.00 0.00 35.18 5.28
1623 2559 9.995957 TTTACACAATCACATTATTATTGACGG 57.004 29.630 0.00 0.00 35.18 4.79
1652 2588 4.331992 CACGAGCAGAATCTGATGAACATT 59.668 41.667 15.38 0.00 32.44 2.71
1655 2591 3.515630 TCACGAGCAGAATCTGATGAAC 58.484 45.455 15.38 0.00 32.44 3.18
1656 2592 3.874392 TCACGAGCAGAATCTGATGAA 57.126 42.857 15.38 0.00 32.44 2.57
1657 2593 3.874392 TTCACGAGCAGAATCTGATGA 57.126 42.857 15.38 8.43 32.44 2.92
1662 2598 2.012673 GGCAATTCACGAGCAGAATCT 58.987 47.619 0.00 0.00 34.78 2.40
1664 2600 2.119801 AGGCAATTCACGAGCAGAAT 57.880 45.000 0.00 0.00 37.30 2.40
1665 2601 1.896220 AAGGCAATTCACGAGCAGAA 58.104 45.000 0.00 0.00 0.00 3.02
1666 2602 2.760634 TAAGGCAATTCACGAGCAGA 57.239 45.000 0.00 0.00 0.00 4.26
1667 2603 5.679734 AATATAAGGCAATTCACGAGCAG 57.320 39.130 0.00 0.00 0.00 4.24
1714 2871 6.133356 ACCTTCTGAACCAATTCCAGTTTAA 58.867 36.000 0.00 0.00 33.49 1.52
1715 2872 5.701224 ACCTTCTGAACCAATTCCAGTTTA 58.299 37.500 0.00 0.00 33.49 2.01
1718 2875 3.884037 ACCTTCTGAACCAATTCCAGT 57.116 42.857 0.00 0.00 33.49 4.00
1719 2876 5.316987 ACTTACCTTCTGAACCAATTCCAG 58.683 41.667 0.00 0.00 33.49 3.86
1721 2878 7.754851 TTTACTTACCTTCTGAACCAATTCC 57.245 36.000 0.00 0.00 33.49 3.01
1725 2882 9.292195 CCTTAATTTACTTACCTTCTGAACCAA 57.708 33.333 0.00 0.00 0.00 3.67
1816 4695 9.408069 GTAGTGGAACGACTTTATATGAATAGG 57.592 37.037 0.00 0.00 45.86 2.57
1911 4790 8.236586 GCTACACATTCAATTGTTCACAGAATA 58.763 33.333 5.13 0.00 0.00 1.75
1942 4825 7.883229 AAATACAATCACCACCGAAAAATTC 57.117 32.000 0.00 0.00 0.00 2.17
2008 4892 1.272490 GACCGTGTGAGAGTCCAATGA 59.728 52.381 0.00 0.00 0.00 2.57
2010 4894 1.000955 GTGACCGTGTGAGAGTCCAAT 59.999 52.381 0.00 0.00 0.00 3.16
2068 4956 6.312180 CCTAACGTCAGGTACTTAACATTTCC 59.688 42.308 0.00 0.00 34.60 3.13
2090 4978 0.899019 TTGCCATGTGCTCGTACCTA 59.101 50.000 7.54 0.00 42.00 3.08
2117 6580 6.740905 GCGTCATTAGAATTGACATCGAAAAA 59.259 34.615 0.00 0.00 33.20 1.94
2127 6590 4.576053 CCATCCTTGCGTCATTAGAATTGA 59.424 41.667 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.