Multiple sequence alignment - TraesCS2D01G148500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G148500 chr2D 100.000 3151 0 0 1 3151 89906962 89910112 0.000000e+00 5819
1 TraesCS2D01G148500 chr2D 94.787 633 27 6 2523 3151 443511042 443510412 0.000000e+00 981
2 TraesCS2D01G148500 chr2D 88.338 343 38 2 1 342 453611702 453612043 8.130000e-111 411
3 TraesCS2D01G148500 chr2D 83.893 447 52 12 887 1319 89940582 89941022 2.930000e-110 409
4 TraesCS2D01G148500 chr2D 77.830 212 44 3 1633 1842 89941602 89941812 9.170000e-26 128
5 TraesCS2D01G148500 chr2A 89.527 1480 60 40 405 1823 89584916 89586361 0.000000e+00 1786
6 TraesCS2D01G148500 chr2A 89.017 346 36 2 1 345 717206427 717206083 8.080000e-116 427
7 TraesCS2D01G148500 chr2A 84.065 433 51 8 887 1302 89596670 89597101 4.900000e-108 401
8 TraesCS2D01G148500 chr2A 91.259 286 20 4 2090 2373 89595255 89595537 4.930000e-103 385
9 TraesCS2D01G148500 chr2A 78.462 195 40 2 1659 1851 89600342 89600536 3.300000e-25 126
10 TraesCS2D01G148500 chr2B 85.008 1274 93 46 417 1622 142445397 142446640 0.000000e+00 1205
11 TraesCS2D01G148500 chr2B 81.086 571 72 23 887 1433 142675451 142676009 1.040000e-114 424
12 TraesCS2D01G148500 chr2B 84.375 384 42 8 1620 1998 142446753 142447123 8.310000e-96 361
13 TraesCS2D01G148500 chr2B 82.778 180 27 4 925 1104 142449450 142449625 1.170000e-34 158
14 TraesCS2D01G148500 chr4D 95.426 634 23 6 2522 3151 234595043 234594412 0.000000e+00 1005
15 TraesCS2D01G148500 chr4D 94.462 632 29 4 2522 3151 189783374 189784001 0.000000e+00 968
16 TraesCS2D01G148500 chr4D 94.462 632 30 5 2524 3151 234602569 234601939 0.000000e+00 968
17 TraesCS2D01G148500 chr4D 94.025 636 31 6 2522 3151 166410089 166410723 0.000000e+00 957
18 TraesCS2D01G148500 chr6D 94.523 639 25 10 2522 3151 425653653 425653016 0.000000e+00 977
19 TraesCS2D01G148500 chr6D 94.703 623 22 9 2524 3142 33359029 33359644 0.000000e+00 957
20 TraesCS2D01G148500 chr6D 93.574 638 30 8 2522 3151 33396204 33396838 0.000000e+00 941
21 TraesCS2D01G148500 chr5D 94.629 633 28 6 2522 3151 300447295 300447924 0.000000e+00 976
22 TraesCS2D01G148500 chr1B 91.643 347 25 4 1 345 666830349 666830005 7.910000e-131 477
23 TraesCS2D01G148500 chr1B 89.337 347 34 3 1 345 353765440 353765095 1.740000e-117 433
24 TraesCS2D01G148500 chr1B 88.439 346 38 2 1 345 160510450 160510106 1.750000e-112 416
25 TraesCS2D01G148500 chrUn 89.213 343 35 2 1 342 88840771 88841112 8.080000e-116 427
26 TraesCS2D01G148500 chrUn 88.338 343 38 2 1 342 88860669 88861010 8.130000e-111 411
27 TraesCS2D01G148500 chr7B 88.047 343 38 3 1 342 333114635 333114975 1.360000e-108 403
28 TraesCS2D01G148500 chr5B 87.896 347 34 6 1 345 491632123 491631783 4.900000e-108 401


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G148500 chr2D 89906962 89910112 3150 False 5819.000000 5819 100.000000 1 3151 1 chr2D.!!$F1 3150
1 TraesCS2D01G148500 chr2D 443510412 443511042 630 True 981.000000 981 94.787000 2523 3151 1 chr2D.!!$R1 628
2 TraesCS2D01G148500 chr2D 89940582 89941812 1230 False 268.500000 409 80.861500 887 1842 2 chr2D.!!$F3 955
3 TraesCS2D01G148500 chr2A 89584916 89586361 1445 False 1786.000000 1786 89.527000 405 1823 1 chr2A.!!$F1 1418
4 TraesCS2D01G148500 chr2A 89595255 89600536 5281 False 304.000000 401 84.595333 887 2373 3 chr2A.!!$F2 1486
5 TraesCS2D01G148500 chr2B 142445397 142449625 4228 False 574.666667 1205 84.053667 417 1998 3 chr2B.!!$F2 1581
6 TraesCS2D01G148500 chr2B 142675451 142676009 558 False 424.000000 424 81.086000 887 1433 1 chr2B.!!$F1 546
7 TraesCS2D01G148500 chr4D 234594412 234595043 631 True 1005.000000 1005 95.426000 2522 3151 1 chr4D.!!$R1 629
8 TraesCS2D01G148500 chr4D 189783374 189784001 627 False 968.000000 968 94.462000 2522 3151 1 chr4D.!!$F2 629
9 TraesCS2D01G148500 chr4D 234601939 234602569 630 True 968.000000 968 94.462000 2524 3151 1 chr4D.!!$R2 627
10 TraesCS2D01G148500 chr4D 166410089 166410723 634 False 957.000000 957 94.025000 2522 3151 1 chr4D.!!$F1 629
11 TraesCS2D01G148500 chr6D 425653016 425653653 637 True 977.000000 977 94.523000 2522 3151 1 chr6D.!!$R1 629
12 TraesCS2D01G148500 chr6D 33359029 33359644 615 False 957.000000 957 94.703000 2524 3142 1 chr6D.!!$F1 618
13 TraesCS2D01G148500 chr6D 33396204 33396838 634 False 941.000000 941 93.574000 2522 3151 1 chr6D.!!$F2 629
14 TraesCS2D01G148500 chr5D 300447295 300447924 629 False 976.000000 976 94.629000 2522 3151 1 chr5D.!!$F1 629

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
202 203 0.109919 GCAAAGCCGACCCGTAAAAG 60.110 55.0 0.00 0.00 0.00 2.27 F
257 258 0.250295 TTTTGCGGGGTCTGACTCTG 60.250 55.0 12.25 12.25 0.00 3.35 F
346 347 0.330604 TACGGGGTCTGCTAGTGACT 59.669 55.0 14.49 0.00 35.04 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2010 5515 0.251832 TCAGTGGAGGAGAGTGGGAC 60.252 60.0 0.0 0.0 0.0 4.46 R
2063 5870 0.321653 ACAAAGGATGAGGACGGTGC 60.322 55.0 0.0 0.0 0.0 5.01 R
2216 6023 1.057851 TTCACCCTCAACCGACCCTT 61.058 55.0 0.0 0.0 0.0 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.449251 AAAATGCATAATTGTGGTTCTTGTTT 57.551 26.923 0.00 0.00 0.00 2.83
27 28 8.449251 AAATGCATAATTGTGGTTCTTGTTTT 57.551 26.923 0.00 0.00 0.00 2.43
28 29 7.656707 ATGCATAATTGTGGTTCTTGTTTTC 57.343 32.000 0.00 0.00 0.00 2.29
29 30 6.815089 TGCATAATTGTGGTTCTTGTTTTCT 58.185 32.000 4.23 0.00 0.00 2.52
30 31 7.271511 TGCATAATTGTGGTTCTTGTTTTCTT 58.728 30.769 4.23 0.00 0.00 2.52
31 32 7.768120 TGCATAATTGTGGTTCTTGTTTTCTTT 59.232 29.630 4.23 0.00 0.00 2.52
34 35 5.476091 TTGTGGTTCTTGTTTTCTTTGGT 57.524 34.783 0.00 0.00 0.00 3.67
35 36 5.066968 TGTGGTTCTTGTTTTCTTTGGTC 57.933 39.130 0.00 0.00 0.00 4.02
37 38 5.245075 TGTGGTTCTTGTTTTCTTTGGTCTT 59.755 36.000 0.00 0.00 0.00 3.01
38 39 6.434652 TGTGGTTCTTGTTTTCTTTGGTCTTA 59.565 34.615 0.00 0.00 0.00 2.10
39 40 6.750501 GTGGTTCTTGTTTTCTTTGGTCTTAC 59.249 38.462 0.00 0.00 0.00 2.34
41 42 7.830201 TGGTTCTTGTTTTCTTTGGTCTTACTA 59.170 33.333 0.00 0.00 0.00 1.82
45 46 9.847224 TCTTGTTTTCTTTGGTCTTACTATTCT 57.153 29.630 0.00 0.00 0.00 2.40
48 49 9.216117 TGTTTTCTTTGGTCTTACTATTCTAGC 57.784 33.333 0.00 0.00 0.00 3.42
51 52 8.773404 TTCTTTGGTCTTACTATTCTAGCAAC 57.227 34.615 0.00 0.00 0.00 4.17
52 53 7.033791 TCTTTGGTCTTACTATTCTAGCAACG 58.966 38.462 0.00 0.00 0.00 4.10
54 55 6.710597 TGGTCTTACTATTCTAGCAACGAT 57.289 37.500 0.00 0.00 0.00 3.73
57 58 7.491372 TGGTCTTACTATTCTAGCAACGATTTG 59.509 37.037 0.00 0.00 35.62 2.32
60 61 7.491372 TCTTACTATTCTAGCAACGATTTGGTG 59.509 37.037 1.13 0.00 43.37 4.17
62 63 6.170506 ACTATTCTAGCAACGATTTGGTGAA 58.829 36.000 1.13 3.95 43.37 3.18
63 64 6.823689 ACTATTCTAGCAACGATTTGGTGAAT 59.176 34.615 14.04 14.04 43.37 2.57
64 65 5.957842 TTCTAGCAACGATTTGGTGAATT 57.042 34.783 1.13 0.00 43.37 2.17
66 67 6.417191 TCTAGCAACGATTTGGTGAATTAC 57.583 37.500 1.13 0.00 43.37 1.89
67 68 6.170506 TCTAGCAACGATTTGGTGAATTACT 58.829 36.000 1.13 0.00 43.37 2.24
68 69 7.324935 TCTAGCAACGATTTGGTGAATTACTA 58.675 34.615 1.13 0.00 43.37 1.82
69 70 7.985184 TCTAGCAACGATTTGGTGAATTACTAT 59.015 33.333 1.13 0.00 43.37 2.12
70 71 6.785191 AGCAACGATTTGGTGAATTACTATG 58.215 36.000 0.00 0.00 41.96 2.23
71 72 6.374333 AGCAACGATTTGGTGAATTACTATGT 59.626 34.615 0.00 0.00 41.96 2.29
72 73 7.551262 AGCAACGATTTGGTGAATTACTATGTA 59.449 33.333 0.00 0.00 41.96 2.29
73 74 8.342634 GCAACGATTTGGTGAATTACTATGTAT 58.657 33.333 0.00 0.00 32.81 2.29
75 76 8.603242 ACGATTTGGTGAATTACTATGTATCC 57.397 34.615 0.00 0.00 0.00 2.59
76 77 8.208224 ACGATTTGGTGAATTACTATGTATCCA 58.792 33.333 0.00 0.00 0.00 3.41
80 81 7.744087 TGGTGAATTACTATGTATCCAATGC 57.256 36.000 0.00 0.00 0.00 3.56
81 82 6.714810 TGGTGAATTACTATGTATCCAATGCC 59.285 38.462 0.00 0.00 0.00 4.40
82 83 6.128282 GGTGAATTACTATGTATCCAATGCCG 60.128 42.308 0.00 0.00 0.00 5.69
83 84 6.426937 GTGAATTACTATGTATCCAATGCCGT 59.573 38.462 0.00 0.00 0.00 5.68
85 86 6.801539 ATTACTATGTATCCAATGCCGTTG 57.198 37.500 0.00 0.00 37.57 4.10
86 87 4.415881 ACTATGTATCCAATGCCGTTGA 57.584 40.909 0.00 0.00 40.37 3.18
88 89 4.816385 ACTATGTATCCAATGCCGTTGAAG 59.184 41.667 0.00 0.00 40.37 3.02
89 90 3.342377 TGTATCCAATGCCGTTGAAGA 57.658 42.857 0.00 0.00 40.37 2.87
90 91 3.680490 TGTATCCAATGCCGTTGAAGAA 58.320 40.909 0.00 0.00 40.37 2.52
91 92 4.075682 TGTATCCAATGCCGTTGAAGAAA 58.924 39.130 0.00 0.00 40.37 2.52
93 94 4.806640 ATCCAATGCCGTTGAAGAAAAT 57.193 36.364 0.00 0.00 40.37 1.82
94 95 5.913137 ATCCAATGCCGTTGAAGAAAATA 57.087 34.783 0.00 0.00 40.37 1.40
95 96 5.713792 TCCAATGCCGTTGAAGAAAATAA 57.286 34.783 0.00 0.00 40.37 1.40
96 97 6.090483 TCCAATGCCGTTGAAGAAAATAAA 57.910 33.333 0.00 0.00 40.37 1.40
98 99 6.986817 TCCAATGCCGTTGAAGAAAATAAAAA 59.013 30.769 0.00 0.00 40.37 1.94
125 126 9.926158 AGCAAATAAATGTATTTTCATGTGTGA 57.074 25.926 0.00 0.00 37.75 3.58
138 139 7.731882 TTTCATGTGTGAAATTGAAATGCAT 57.268 28.000 0.00 0.00 46.49 3.96
140 141 9.438228 TTTCATGTGTGAAATTGAAATGCATAT 57.562 25.926 0.00 0.00 46.49 1.78
141 142 9.438228 TTCATGTGTGAAATTGAAATGCATATT 57.562 25.926 0.00 0.00 41.22 1.28
142 143 9.438228 TCATGTGTGAAATTGAAATGCATATTT 57.562 25.926 0.00 1.79 39.16 1.40
152 153 5.241378 GAAATGCATATTTCGGATTTGCG 57.759 39.130 0.00 0.00 41.81 4.85
153 154 2.772568 TGCATATTTCGGATTTGCGG 57.227 45.000 9.26 0.00 36.11 5.69
154 155 1.336440 TGCATATTTCGGATTTGCGGG 59.664 47.619 9.26 0.00 36.11 6.13
155 156 1.930371 GCATATTTCGGATTTGCGGGC 60.930 52.381 0.00 0.00 0.00 6.13
156 157 0.958822 ATATTTCGGATTTGCGGGCC 59.041 50.000 0.00 0.00 0.00 5.80
157 158 1.440938 TATTTCGGATTTGCGGGCCG 61.441 55.000 24.35 24.35 46.08 6.13
162 163 3.595758 GATTTGCGGGCCGATGGG 61.596 66.667 33.44 0.00 0.00 4.00
172 173 4.838152 CCGATGGGGCAGTGTCCG 62.838 72.222 7.89 0.00 0.00 4.79
173 174 3.770040 CGATGGGGCAGTGTCCGA 61.770 66.667 7.89 3.73 0.00 4.55
174 175 2.187946 GATGGGGCAGTGTCCGAG 59.812 66.667 7.89 0.00 0.00 4.63
175 176 4.101448 ATGGGGCAGTGTCCGAGC 62.101 66.667 7.89 0.00 0.00 5.03
177 178 4.767255 GGGGCAGTGTCCGAGCAG 62.767 72.222 7.89 0.00 0.00 4.24
179 180 2.433318 GGCAGTGTCCGAGCAGAC 60.433 66.667 0.00 0.00 37.28 3.51
180 181 2.433318 GCAGTGTCCGAGCAGACC 60.433 66.667 0.00 0.00 35.83 3.85
181 182 2.262915 CAGTGTCCGAGCAGACCC 59.737 66.667 0.00 0.00 35.83 4.46
182 183 2.997897 AGTGTCCGAGCAGACCCC 60.998 66.667 0.00 0.00 35.83 4.95
183 184 4.436998 GTGTCCGAGCAGACCCCG 62.437 72.222 0.00 0.00 35.83 5.73
189 190 3.435186 GAGCAGACCCCGCAAAGC 61.435 66.667 0.00 0.00 0.00 3.51
193 194 4.699522 AGACCCCGCAAAGCCGAC 62.700 66.667 0.00 0.00 0.00 4.79
199 200 2.739287 CGCAAAGCCGACCCGTAA 60.739 61.111 0.00 0.00 0.00 3.18
202 203 0.109919 GCAAAGCCGACCCGTAAAAG 60.110 55.000 0.00 0.00 0.00 2.27
203 204 1.515081 CAAAGCCGACCCGTAAAAGA 58.485 50.000 0.00 0.00 0.00 2.52
204 205 1.463444 CAAAGCCGACCCGTAAAAGAG 59.537 52.381 0.00 0.00 0.00 2.85
205 206 0.672711 AAGCCGACCCGTAAAAGAGC 60.673 55.000 0.00 0.00 0.00 4.09
206 207 1.375013 GCCGACCCGTAAAAGAGCA 60.375 57.895 0.00 0.00 0.00 4.26
207 208 0.743345 GCCGACCCGTAAAAGAGCAT 60.743 55.000 0.00 0.00 0.00 3.79
208 209 1.472026 GCCGACCCGTAAAAGAGCATA 60.472 52.381 0.00 0.00 0.00 3.14
209 210 2.805657 GCCGACCCGTAAAAGAGCATAT 60.806 50.000 0.00 0.00 0.00 1.78
210 211 3.463944 CCGACCCGTAAAAGAGCATATT 58.536 45.455 0.00 0.00 0.00 1.28
211 212 3.493503 CCGACCCGTAAAAGAGCATATTC 59.506 47.826 0.00 0.00 0.00 1.75
212 213 3.493503 CGACCCGTAAAAGAGCATATTCC 59.506 47.826 0.00 0.00 0.00 3.01
213 214 4.448210 GACCCGTAAAAGAGCATATTCCA 58.552 43.478 0.00 0.00 0.00 3.53
214 215 4.196971 ACCCGTAAAAGAGCATATTCCAC 58.803 43.478 0.00 0.00 0.00 4.02
215 216 4.196193 CCCGTAAAAGAGCATATTCCACA 58.804 43.478 0.00 0.00 0.00 4.17
216 217 4.638421 CCCGTAAAAGAGCATATTCCACAA 59.362 41.667 0.00 0.00 0.00 3.33
217 218 5.124776 CCCGTAAAAGAGCATATTCCACAAA 59.875 40.000 0.00 0.00 0.00 2.83
218 219 6.183360 CCCGTAAAAGAGCATATTCCACAAAT 60.183 38.462 0.00 0.00 0.00 2.32
219 220 7.012894 CCCGTAAAAGAGCATATTCCACAAATA 59.987 37.037 0.00 0.00 34.37 1.40
220 221 8.567948 CCGTAAAAGAGCATATTCCACAAATAT 58.432 33.333 0.00 0.00 40.49 1.28
221 222 9.599322 CGTAAAAGAGCATATTCCACAAATATC 57.401 33.333 0.00 0.00 38.28 1.63
222 223 9.899226 GTAAAAGAGCATATTCCACAAATATCC 57.101 33.333 0.00 0.00 38.28 2.59
223 224 8.773033 AAAAGAGCATATTCCACAAATATCCT 57.227 30.769 0.00 0.00 38.28 3.24
224 225 8.773033 AAAGAGCATATTCCACAAATATCCTT 57.227 30.769 0.00 0.00 38.28 3.36
225 226 8.773033 AAGAGCATATTCCACAAATATCCTTT 57.227 30.769 0.00 0.00 38.28 3.11
226 227 8.773033 AGAGCATATTCCACAAATATCCTTTT 57.227 30.769 0.00 0.00 38.28 2.27
245 246 3.495670 TTTTACGGATCCATTTTGCGG 57.504 42.857 13.41 0.00 31.68 5.69
246 247 1.384525 TTACGGATCCATTTTGCGGG 58.615 50.000 13.41 0.00 31.68 6.13
247 248 0.464735 TACGGATCCATTTTGCGGGG 60.465 55.000 13.41 0.00 31.68 5.73
248 249 1.752694 CGGATCCATTTTGCGGGGT 60.753 57.895 13.41 0.00 0.00 4.95
250 251 0.395724 GGATCCATTTTGCGGGGTCT 60.396 55.000 6.95 0.00 34.61 3.85
251 252 0.740737 GATCCATTTTGCGGGGTCTG 59.259 55.000 0.00 0.00 31.36 3.51
253 254 0.608035 TCCATTTTGCGGGGTCTGAC 60.608 55.000 0.00 0.00 0.00 3.51
254 255 0.609131 CCATTTTGCGGGGTCTGACT 60.609 55.000 7.85 0.00 0.00 3.41
256 257 0.693049 ATTTTGCGGGGTCTGACTCT 59.307 50.000 7.74 0.00 0.00 3.24
257 258 0.250295 TTTTGCGGGGTCTGACTCTG 60.250 55.000 12.25 12.25 0.00 3.35
259 260 4.459089 GCGGGGTCTGACTCTGCC 62.459 72.222 27.39 11.86 45.15 4.85
260 261 4.135153 CGGGGTCTGACTCTGCCG 62.135 72.222 7.74 0.00 0.00 5.69
261 262 4.459089 GGGGTCTGACTCTGCCGC 62.459 72.222 7.74 0.00 0.00 6.53
263 264 4.803426 GGTCTGACTCTGCCGCCG 62.803 72.222 7.85 0.00 0.00 6.46
285 286 3.053291 CGCTAGCCCGCAAAACCA 61.053 61.111 9.66 0.00 0.00 3.67
286 287 2.406616 CGCTAGCCCGCAAAACCAT 61.407 57.895 9.66 0.00 0.00 3.55
287 288 1.890174 GCTAGCCCGCAAAACCATT 59.110 52.632 2.29 0.00 0.00 3.16
289 290 1.337728 GCTAGCCCGCAAAACCATTTT 60.338 47.619 2.29 0.00 0.00 1.82
290 291 2.870035 GCTAGCCCGCAAAACCATTTTT 60.870 45.455 2.29 0.00 35.15 1.94
317 318 2.455295 GTGTAAACACGTTTTGCGGA 57.545 45.000 0.00 0.00 46.52 5.54
318 319 2.989641 GTGTAAACACGTTTTGCGGAT 58.010 42.857 0.00 0.00 46.52 4.18
319 320 2.968655 GTGTAAACACGTTTTGCGGATC 59.031 45.455 0.00 0.00 46.52 3.36
320 321 2.227556 GTAAACACGTTTTGCGGATCG 58.772 47.619 0.00 0.00 46.52 3.69
322 323 2.202298 CACGTTTTGCGGATCGGC 60.202 61.111 17.70 17.70 46.52 5.54
323 324 3.784412 ACGTTTTGCGGATCGGCG 61.784 61.111 19.00 0.00 46.52 6.46
324 325 3.784412 CGTTTTGCGGATCGGCGT 61.784 61.111 19.00 0.00 36.85 5.68
326 327 1.789116 GTTTTGCGGATCGGCGTTA 59.211 52.632 19.00 5.73 35.06 3.18
327 328 0.375803 GTTTTGCGGATCGGCGTTAT 59.624 50.000 19.00 0.00 35.06 1.89
328 329 1.593933 GTTTTGCGGATCGGCGTTATA 59.406 47.619 19.00 0.00 35.06 0.98
330 331 0.935831 TTGCGGATCGGCGTTATACG 60.936 55.000 19.00 7.92 45.88 3.06
331 332 2.084681 GCGGATCGGCGTTATACGG 61.085 63.158 14.02 5.42 42.82 4.02
332 333 1.443194 CGGATCGGCGTTATACGGG 60.443 63.158 6.85 0.00 42.82 5.28
333 334 1.080298 GGATCGGCGTTATACGGGG 60.080 63.158 6.85 0.00 42.82 5.73
334 335 1.662044 GATCGGCGTTATACGGGGT 59.338 57.895 6.85 0.00 42.82 4.95
335 336 0.387750 GATCGGCGTTATACGGGGTC 60.388 60.000 6.85 0.00 42.82 4.46
336 337 0.825010 ATCGGCGTTATACGGGGTCT 60.825 55.000 6.85 0.00 42.82 3.85
337 338 1.299620 CGGCGTTATACGGGGTCTG 60.300 63.158 0.00 0.00 42.82 3.51
338 339 1.593479 GGCGTTATACGGGGTCTGC 60.593 63.158 1.14 0.00 42.82 4.26
339 340 1.440476 GCGTTATACGGGGTCTGCT 59.560 57.895 1.14 0.00 42.82 4.24
340 341 0.670162 GCGTTATACGGGGTCTGCTA 59.330 55.000 1.14 0.00 42.82 3.49
343 344 2.287427 CGTTATACGGGGTCTGCTAGTG 60.287 54.545 0.00 0.00 38.08 2.74
344 345 2.954318 GTTATACGGGGTCTGCTAGTGA 59.046 50.000 0.00 0.00 0.00 3.41
345 346 1.400737 ATACGGGGTCTGCTAGTGAC 58.599 55.000 8.79 8.79 0.00 3.67
346 347 0.330604 TACGGGGTCTGCTAGTGACT 59.669 55.000 14.49 0.00 35.04 3.41
347 348 0.966370 ACGGGGTCTGCTAGTGACTC 60.966 60.000 14.49 11.75 35.04 3.36
348 349 2.203806 GGGGTCTGCTAGTGACTCC 58.796 63.158 17.14 17.14 46.30 3.85
349 350 1.331399 GGGGTCTGCTAGTGACTCCC 61.331 65.000 19.79 19.11 46.53 4.30
350 351 1.668101 GGGTCTGCTAGTGACTCCCG 61.668 65.000 14.49 0.00 35.04 5.14
351 352 0.680280 GGTCTGCTAGTGACTCCCGA 60.680 60.000 14.49 0.00 35.04 5.14
353 354 1.751924 GTCTGCTAGTGACTCCCGAAT 59.248 52.381 9.69 0.00 0.00 3.34
355 356 2.832129 TCTGCTAGTGACTCCCGAATTT 59.168 45.455 0.00 0.00 0.00 1.82
356 357 3.260884 TCTGCTAGTGACTCCCGAATTTT 59.739 43.478 0.00 0.00 0.00 1.82
381 382 8.925161 TTTTGAGTAAAAGGACATCTGTTTTG 57.075 30.769 0.00 0.00 32.31 2.44
382 383 6.072112 TGAGTAAAAGGACATCTGTTTTGC 57.928 37.500 0.00 0.00 0.00 3.68
383 384 5.592282 TGAGTAAAAGGACATCTGTTTTGCA 59.408 36.000 0.00 0.00 30.75 4.08
385 386 6.872920 AGTAAAAGGACATCTGTTTTGCAAA 58.127 32.000 8.05 8.05 30.75 3.68
387 388 6.849588 AAAAGGACATCTGTTTTGCAAATC 57.150 33.333 13.65 12.94 0.00 2.17
388 389 4.164822 AGGACATCTGTTTTGCAAATCG 57.835 40.909 13.65 8.85 0.00 3.34
390 391 2.663119 GACATCTGTTTTGCAAATCGCC 59.337 45.455 13.65 2.44 41.33 5.54
391 392 2.297033 ACATCTGTTTTGCAAATCGCCT 59.703 40.909 13.65 0.00 41.33 5.52
392 393 3.243839 ACATCTGTTTTGCAAATCGCCTT 60.244 39.130 13.65 0.00 41.33 4.35
393 394 3.451141 TCTGTTTTGCAAATCGCCTTT 57.549 38.095 13.65 0.00 41.33 3.11
394 395 3.791245 TCTGTTTTGCAAATCGCCTTTT 58.209 36.364 13.65 0.00 41.33 2.27
413 414 3.944055 TTTTCTCTCCCGAGTTCTCTG 57.056 47.619 0.00 0.00 38.45 3.35
801 842 1.886655 GCATCTTTCGGTGGGGAAACT 60.887 52.381 0.00 0.00 32.76 2.66
813 854 4.200092 GTGGGGAAACTAGCTTCCATTAG 58.800 47.826 23.16 0.00 45.86 1.73
816 857 4.640647 GGGGAAACTAGCTTCCATTAGTTG 59.359 45.833 23.16 0.00 45.86 3.16
916 1446 4.574674 TTCTGATATGCACCCACTTCTT 57.425 40.909 0.00 0.00 0.00 2.52
1056 1606 1.571460 CAACCACAGCGAACAGAGC 59.429 57.895 0.00 0.00 0.00 4.09
1340 1901 6.767902 AGGATAAGAGCATTTCGAGCAAATTA 59.232 34.615 0.00 0.00 31.79 1.40
1353 1914 4.999950 CGAGCAAATTATAGGAGGATGCTT 59.000 41.667 0.00 0.00 42.24 3.91
1410 1977 1.019278 TGCGTTCGGAAGGATTGCTC 61.019 55.000 14.13 0.00 32.50 4.26
1446 2050 3.830744 TCTCACCGTTTCTCCTTTTCA 57.169 42.857 0.00 0.00 0.00 2.69
1459 2063 9.965824 GTTTCTCCTTTTCATTTTACATCAAGA 57.034 29.630 0.00 0.00 0.00 3.02
1715 5214 1.632920 TGATACCCCTCATTGCACACA 59.367 47.619 0.00 0.00 0.00 3.72
1727 5227 4.340666 TCATTGCACACAGTGTTACCAAAT 59.659 37.500 2.45 0.00 35.19 2.32
1831 5335 4.630069 AGTTGTCCGAAGAAAATGATACCG 59.370 41.667 0.00 0.00 0.00 4.02
1854 5359 3.480470 ACCTCATTGAAGTTGGACACAG 58.520 45.455 0.00 0.00 0.00 3.66
1858 5363 4.780815 TCATTGAAGTTGGACACAGACTT 58.219 39.130 0.00 0.00 36.40 3.01
1869 5374 2.808543 GACACAGACTTTGTTGCCCTAG 59.191 50.000 0.00 0.00 38.16 3.02
1989 5494 1.322442 GACCATTAGGCCCATTGAGC 58.678 55.000 0.00 0.00 39.06 4.26
1998 5503 0.743097 GCCCATTGAGCTGTCCAATC 59.257 55.000 0.00 0.00 32.40 2.67
1999 5504 1.019673 CCCATTGAGCTGTCCAATCG 58.980 55.000 0.00 0.00 32.40 3.34
2000 5505 0.379669 CCATTGAGCTGTCCAATCGC 59.620 55.000 0.00 0.00 32.40 4.58
2001 5506 0.379669 CATTGAGCTGTCCAATCGCC 59.620 55.000 0.00 0.00 32.40 5.54
2002 5507 0.749454 ATTGAGCTGTCCAATCGCCC 60.749 55.000 0.00 0.00 28.89 6.13
2005 5510 4.115199 GCTGTCCAATCGCCCCCT 62.115 66.667 0.00 0.00 0.00 4.79
2006 5511 2.190578 CTGTCCAATCGCCCCCTC 59.809 66.667 0.00 0.00 0.00 4.30
2007 5512 3.406595 CTGTCCAATCGCCCCCTCC 62.407 68.421 0.00 0.00 0.00 4.30
2019 5524 4.400251 CCCTCCCCGTCCCACTCT 62.400 72.222 0.00 0.00 0.00 3.24
2020 5525 2.760385 CCTCCCCGTCCCACTCTC 60.760 72.222 0.00 0.00 0.00 3.20
2025 5832 2.037367 CCGTCCCACTCTCCTCCA 59.963 66.667 0.00 0.00 0.00 3.86
2027 5834 1.304547 CGTCCCACTCTCCTCCACT 60.305 63.158 0.00 0.00 0.00 4.00
2031 5838 1.079490 TCCCACTCTCCTCCACTGAAT 59.921 52.381 0.00 0.00 0.00 2.57
2047 5854 3.826729 ACTGAATTCCTTTGGCAACTACC 59.173 43.478 0.00 0.00 37.61 3.18
2056 5863 3.502123 TTGGCAACTACCAACTAGCTT 57.498 42.857 0.00 0.00 44.80 3.74
2057 5864 3.502123 TGGCAACTACCAACTAGCTTT 57.498 42.857 0.00 0.00 36.55 3.51
2060 5867 5.566469 TGGCAACTACCAACTAGCTTTAAT 58.434 37.500 0.00 0.00 36.55 1.40
2063 5870 7.335924 TGGCAACTACCAACTAGCTTTAATTAG 59.664 37.037 0.00 0.00 36.55 1.73
2070 5877 5.220605 CCAACTAGCTTTAATTAGCACCGTC 60.221 44.000 0.00 0.00 43.68 4.79
2071 5878 4.439968 ACTAGCTTTAATTAGCACCGTCC 58.560 43.478 0.00 0.00 43.68 4.79
2077 5884 2.622064 AATTAGCACCGTCCTCATCC 57.378 50.000 0.00 0.00 0.00 3.51
2080 5887 1.568504 TAGCACCGTCCTCATCCTTT 58.431 50.000 0.00 0.00 0.00 3.11
2095 5902 7.038302 TCCTCATCCTTTGTGTTTACTCAGTAT 60.038 37.037 0.00 0.00 0.00 2.12
2097 5904 9.653287 CTCATCCTTTGTGTTTACTCAGTATAA 57.347 33.333 0.00 0.00 0.00 0.98
2141 5948 5.134725 AGAGGAATATGTTTGGCAGGAAT 57.865 39.130 0.00 0.00 0.00 3.01
2160 5967 8.154649 CAGGAATTGCTTCGTAATAAATACCT 57.845 34.615 0.00 0.00 31.75 3.08
2164 5971 9.859692 GAATTGCTTCGTAATAAATACCTACAC 57.140 33.333 0.00 0.00 0.00 2.90
2165 5972 8.951787 ATTGCTTCGTAATAAATACCTACACA 57.048 30.769 0.00 0.00 0.00 3.72
2167 5974 7.321908 TGCTTCGTAATAAATACCTACACACA 58.678 34.615 0.00 0.00 0.00 3.72
2187 5994 8.594550 ACACACAAAGACTTTATACTAGGTGAT 58.405 33.333 15.35 4.64 0.00 3.06
2216 6023 2.208431 CAACAAAATCGCCCTTTTGCA 58.792 42.857 14.90 0.00 45.66 4.08
2225 6032 4.174305 CCTTTTGCAAGGGTCGGT 57.826 55.556 0.00 0.00 45.63 4.69
2241 6048 0.889186 CGGTTGAGGGTGAAGGTTGG 60.889 60.000 0.00 0.00 0.00 3.77
2252 6059 4.770531 GGGTGAAGGTTGGTTTATTTAGCT 59.229 41.667 0.00 0.00 0.00 3.32
2259 6066 4.398358 GGTTGGTTTATTTAGCTGAGGGAC 59.602 45.833 0.00 0.00 0.00 4.46
2261 6068 5.514500 TGGTTTATTTAGCTGAGGGACTT 57.486 39.130 0.00 0.00 41.55 3.01
2262 6069 5.497474 TGGTTTATTTAGCTGAGGGACTTC 58.503 41.667 0.00 0.00 41.55 3.01
2263 6070 4.571176 GGTTTATTTAGCTGAGGGACTTCG 59.429 45.833 0.00 0.00 41.55 3.79
2264 6071 5.176592 GTTTATTTAGCTGAGGGACTTCGT 58.823 41.667 0.00 0.00 41.55 3.85
2265 6072 6.335777 GTTTATTTAGCTGAGGGACTTCGTA 58.664 40.000 0.00 0.00 41.55 3.43
2267 6074 5.615925 ATTTAGCTGAGGGACTTCGTAAT 57.384 39.130 0.00 0.00 41.55 1.89
2268 6075 6.726490 ATTTAGCTGAGGGACTTCGTAATA 57.274 37.500 0.00 0.00 41.55 0.98
2269 6076 5.769484 TTAGCTGAGGGACTTCGTAATAG 57.231 43.478 0.00 0.00 41.55 1.73
2289 6097 6.952773 ATAGGCAACAGTCAAACTAAACAA 57.047 33.333 0.00 0.00 41.41 2.83
2296 6104 7.064016 GCAACAGTCAAACTAAACAATTTTGGA 59.936 33.333 0.00 0.00 30.71 3.53
2343 6157 3.956199 GGTAGGCCTTAAATACCCAAACC 59.044 47.826 12.58 3.36 34.14 3.27
2344 6158 3.837399 AGGCCTTAAATACCCAAACCA 57.163 42.857 0.00 0.00 0.00 3.67
2345 6159 4.346478 AGGCCTTAAATACCCAAACCAT 57.654 40.909 0.00 0.00 0.00 3.55
2346 6160 4.694512 AGGCCTTAAATACCCAAACCATT 58.305 39.130 0.00 0.00 0.00 3.16
2347 6161 5.844601 AGGCCTTAAATACCCAAACCATTA 58.155 37.500 0.00 0.00 0.00 1.90
2348 6162 6.449078 AGGCCTTAAATACCCAAACCATTAT 58.551 36.000 0.00 0.00 0.00 1.28
2349 6163 7.597327 AGGCCTTAAATACCCAAACCATTATA 58.403 34.615 0.00 0.00 0.00 0.98
2350 6164 8.238769 AGGCCTTAAATACCCAAACCATTATAT 58.761 33.333 0.00 0.00 0.00 0.86
2351 6165 9.536510 GGCCTTAAATACCCAAACCATTATATA 57.463 33.333 0.00 0.00 0.00 0.86
2373 6187 9.998106 ATATACCATTAAGTAGCGAAAGAACAT 57.002 29.630 0.00 0.00 0.00 2.71
2376 6190 6.430000 ACCATTAAGTAGCGAAAGAACATGTT 59.570 34.615 11.78 11.78 0.00 2.71
2380 6194 5.095691 AGTAGCGAAAGAACATGTTTGTG 57.904 39.130 13.36 3.00 35.83 3.33
2399 6213 3.516578 GCTTCTGTGTTAGAGGCGT 57.483 52.632 0.00 0.00 46.64 5.68
2400 6214 1.071605 GCTTCTGTGTTAGAGGCGTG 58.928 55.000 0.00 0.00 46.64 5.34
2403 6217 0.601558 TCTGTGTTAGAGGCGTGTCC 59.398 55.000 0.00 0.00 0.00 4.02
2404 6218 0.317160 CTGTGTTAGAGGCGTGTCCA 59.683 55.000 0.00 0.00 37.29 4.02
2415 6229 4.130118 GAGGCGTGTCCATTGAATATTCT 58.870 43.478 16.24 0.00 37.29 2.40
2421 6235 6.403636 GCGTGTCCATTGAATATTCTGTTTCT 60.404 38.462 16.24 0.00 0.00 2.52
2451 6265 5.954296 CTTATTGGGCATAAGTGGATCTG 57.046 43.478 0.00 0.00 39.73 2.90
2452 6266 5.624159 CTTATTGGGCATAAGTGGATCTGA 58.376 41.667 0.00 0.00 39.73 3.27
2455 6269 4.897509 TGGGCATAAGTGGATCTGATAG 57.102 45.455 0.00 0.00 0.00 2.08
2456 6270 4.492646 TGGGCATAAGTGGATCTGATAGA 58.507 43.478 0.00 0.00 0.00 1.98
2458 6272 5.046087 TGGGCATAAGTGGATCTGATAGATG 60.046 44.000 0.00 0.00 34.53 2.90
2459 6273 5.188555 GGGCATAAGTGGATCTGATAGATGA 59.811 44.000 0.00 0.00 34.53 2.92
2462 6276 8.481314 GGCATAAGTGGATCTGATAGATGAATA 58.519 37.037 0.00 0.00 34.53 1.75
2463 6277 9.881649 GCATAAGTGGATCTGATAGATGAATAA 57.118 33.333 0.00 0.00 34.53 1.40
2487 6301 6.727824 AACTACTGCTTATGTTTAGCACAG 57.272 37.500 0.00 0.00 43.30 3.66
2488 6302 5.178797 ACTACTGCTTATGTTTAGCACAGG 58.821 41.667 0.00 0.00 43.30 4.00
2489 6303 3.347216 ACTGCTTATGTTTAGCACAGGG 58.653 45.455 0.00 0.00 43.30 4.45
2491 6305 4.019681 ACTGCTTATGTTTAGCACAGGGTA 60.020 41.667 0.00 0.00 43.30 3.69
2492 6306 4.258543 TGCTTATGTTTAGCACAGGGTAC 58.741 43.478 0.00 0.00 43.30 3.34
2493 6307 4.258543 GCTTATGTTTAGCACAGGGTACA 58.741 43.478 0.00 0.00 39.40 2.90
2494 6308 4.881850 GCTTATGTTTAGCACAGGGTACAT 59.118 41.667 0.00 0.00 39.40 2.29
2495 6309 5.220854 GCTTATGTTTAGCACAGGGTACATG 60.221 44.000 0.00 0.00 39.40 3.21
2496 6310 3.066291 TGTTTAGCACAGGGTACATGG 57.934 47.619 0.00 0.00 0.00 3.66
2497 6311 2.373836 TGTTTAGCACAGGGTACATGGT 59.626 45.455 0.00 0.00 0.00 3.55
2498 6312 3.181438 TGTTTAGCACAGGGTACATGGTT 60.181 43.478 0.00 0.00 0.00 3.67
2501 6315 6.070136 TGTTTAGCACAGGGTACATGGTTATA 60.070 38.462 0.00 0.00 0.00 0.98
2502 6316 6.757173 TTAGCACAGGGTACATGGTTATAT 57.243 37.500 0.00 0.00 0.00 0.86
2504 6318 6.952605 AGCACAGGGTACATGGTTATATAT 57.047 37.500 0.00 0.00 0.00 0.86
2505 6319 9.549984 TTAGCACAGGGTACATGGTTATATATA 57.450 33.333 0.00 0.00 0.00 0.86
2506 6320 8.624019 AGCACAGGGTACATGGTTATATATAT 57.376 34.615 0.00 0.00 0.00 0.86
2508 6322 9.109393 GCACAGGGTACATGGTTATATATATTG 57.891 37.037 0.00 0.00 0.00 1.90
2509 6323 9.613428 CACAGGGTACATGGTTATATATATTGG 57.387 37.037 0.00 0.00 0.00 3.16
2536 6722 4.028993 ACCGACTTTGTAACATCCCAAT 57.971 40.909 0.00 0.00 0.00 3.16
2635 6822 0.981183 TACGCAACTCAAGGACCCAT 59.019 50.000 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.449251 AAACAAGAACCACAATTATGCATTTT 57.551 26.923 3.54 0.00 0.00 1.82
3 4 7.933033 AGAAAACAAGAACCACAATTATGCATT 59.067 29.630 3.54 0.00 0.00 3.56
6 7 7.713764 AAGAAAACAAGAACCACAATTATGC 57.286 32.000 0.00 0.00 0.00 3.14
7 8 8.550376 CCAAAGAAAACAAGAACCACAATTATG 58.450 33.333 0.00 0.00 0.00 1.90
10 11 6.472016 ACCAAAGAAAACAAGAACCACAATT 58.528 32.000 0.00 0.00 0.00 2.32
12 13 5.245075 AGACCAAAGAAAACAAGAACCACAA 59.755 36.000 0.00 0.00 0.00 3.33
14 15 5.324784 AGACCAAAGAAAACAAGAACCAC 57.675 39.130 0.00 0.00 0.00 4.16
16 17 7.096884 AGTAAGACCAAAGAAAACAAGAACC 57.903 36.000 0.00 0.00 0.00 3.62
19 20 9.847224 AGAATAGTAAGACCAAAGAAAACAAGA 57.153 29.630 0.00 0.00 0.00 3.02
23 24 9.216117 TGCTAGAATAGTAAGACCAAAGAAAAC 57.784 33.333 0.00 0.00 41.93 2.43
24 25 9.787435 TTGCTAGAATAGTAAGACCAAAGAAAA 57.213 29.630 0.00 0.00 38.39 2.29
26 27 7.544566 CGTTGCTAGAATAGTAAGACCAAAGAA 59.455 37.037 0.00 0.00 43.91 2.52
27 28 7.033791 CGTTGCTAGAATAGTAAGACCAAAGA 58.966 38.462 0.00 0.00 43.91 2.52
28 29 7.033791 TCGTTGCTAGAATAGTAAGACCAAAG 58.966 38.462 0.00 0.00 43.91 2.77
29 30 6.927416 TCGTTGCTAGAATAGTAAGACCAAA 58.073 36.000 0.00 0.00 43.91 3.28
30 31 6.519679 TCGTTGCTAGAATAGTAAGACCAA 57.480 37.500 0.00 0.00 43.91 3.67
31 32 6.710597 ATCGTTGCTAGAATAGTAAGACCA 57.289 37.500 0.00 0.00 43.91 4.02
34 35 7.491372 CACCAAATCGTTGCTAGAATAGTAAGA 59.509 37.037 0.00 0.00 43.91 2.10
35 36 7.491372 TCACCAAATCGTTGCTAGAATAGTAAG 59.509 37.037 0.00 0.00 43.91 2.34
37 38 6.869695 TCACCAAATCGTTGCTAGAATAGTA 58.130 36.000 0.00 0.00 41.93 1.82
38 39 5.730550 TCACCAAATCGTTGCTAGAATAGT 58.269 37.500 0.00 0.00 41.93 2.12
39 40 6.662414 TTCACCAAATCGTTGCTAGAATAG 57.338 37.500 0.00 0.00 43.09 1.73
41 42 6.515272 AATTCACCAAATCGTTGCTAGAAT 57.485 33.333 0.00 0.00 33.32 2.40
43 44 6.170506 AGTAATTCACCAAATCGTTGCTAGA 58.829 36.000 0.00 0.00 33.01 2.43
44 45 6.422776 AGTAATTCACCAAATCGTTGCTAG 57.577 37.500 0.00 0.00 33.01 3.42
45 46 7.551262 ACATAGTAATTCACCAAATCGTTGCTA 59.449 33.333 0.00 0.00 33.01 3.49
47 48 6.551736 ACATAGTAATTCACCAAATCGTTGC 58.448 36.000 0.00 0.00 33.01 4.17
48 49 9.864034 GATACATAGTAATTCACCAAATCGTTG 57.136 33.333 0.00 0.00 34.25 4.10
51 52 8.601845 TGGATACATAGTAATTCACCAAATCG 57.398 34.615 0.00 0.00 46.17 3.34
70 71 4.695217 TTTCTTCAACGGCATTGGATAC 57.305 40.909 0.00 0.00 38.98 2.24
71 72 5.913137 ATTTTCTTCAACGGCATTGGATA 57.087 34.783 0.00 0.00 38.98 2.59
72 73 4.806640 ATTTTCTTCAACGGCATTGGAT 57.193 36.364 0.00 0.00 38.98 3.41
73 74 5.713792 TTATTTTCTTCAACGGCATTGGA 57.286 34.783 0.00 0.00 38.98 3.53
99 100 9.926158 TCACACATGAAAATACATTTATTTGCT 57.074 25.926 0.00 0.00 37.85 3.91
116 117 9.438228 AAATATGCATTTCAATTTCACACATGA 57.562 25.926 3.54 0.00 27.60 3.07
117 118 9.697250 GAAATATGCATTTCAATTTCACACATG 57.303 29.630 20.39 0.00 46.29 3.21
131 132 4.050553 CCGCAAATCCGAAATATGCATTT 58.949 39.130 3.54 0.00 37.06 2.32
132 133 3.552684 CCCGCAAATCCGAAATATGCATT 60.553 43.478 3.54 0.00 36.84 3.56
133 134 2.030007 CCCGCAAATCCGAAATATGCAT 60.030 45.455 3.79 3.79 36.84 3.96
134 135 1.336440 CCCGCAAATCCGAAATATGCA 59.664 47.619 0.00 0.00 36.84 3.96
136 137 1.335872 GGCCCGCAAATCCGAAATATG 60.336 52.381 0.00 0.00 0.00 1.78
137 138 0.958822 GGCCCGCAAATCCGAAATAT 59.041 50.000 0.00 0.00 0.00 1.28
138 139 1.440938 CGGCCCGCAAATCCGAAATA 61.441 55.000 0.00 0.00 45.53 1.40
140 141 3.436055 CGGCCCGCAAATCCGAAA 61.436 61.111 0.00 0.00 45.53 3.46
143 144 3.952675 CATCGGCCCGCAAATCCG 61.953 66.667 0.00 0.00 44.16 4.18
145 146 3.595758 CCCATCGGCCCGCAAATC 61.596 66.667 0.00 0.00 0.00 2.17
155 156 4.838152 CGGACACTGCCCCATCGG 62.838 72.222 0.00 0.00 0.00 4.18
156 157 3.723235 CTCGGACACTGCCCCATCG 62.723 68.421 0.00 0.00 0.00 3.84
157 158 2.187946 CTCGGACACTGCCCCATC 59.812 66.667 0.00 0.00 0.00 3.51
158 159 4.101448 GCTCGGACACTGCCCCAT 62.101 66.667 0.00 0.00 0.00 4.00
160 161 4.767255 CTGCTCGGACACTGCCCC 62.767 72.222 0.00 0.00 0.00 5.80
162 163 2.433318 GTCTGCTCGGACACTGCC 60.433 66.667 4.09 0.00 36.35 4.85
163 164 2.433318 GGTCTGCTCGGACACTGC 60.433 66.667 10.63 0.00 37.91 4.40
164 165 2.262915 GGGTCTGCTCGGACACTG 59.737 66.667 10.63 0.00 36.75 3.66
170 171 4.697756 TTTGCGGGGTCTGCTCGG 62.698 66.667 0.30 0.00 0.00 4.63
171 172 3.121030 CTTTGCGGGGTCTGCTCG 61.121 66.667 0.30 0.00 0.00 5.03
172 173 3.435186 GCTTTGCGGGGTCTGCTC 61.435 66.667 0.30 0.00 0.00 4.26
175 176 4.697756 TCGGCTTTGCGGGGTCTG 62.698 66.667 0.00 0.00 0.00 3.51
176 177 4.699522 GTCGGCTTTGCGGGGTCT 62.700 66.667 0.00 0.00 0.00 3.85
181 182 4.745751 TACGGGTCGGCTTTGCGG 62.746 66.667 0.00 0.00 0.00 5.69
182 183 1.843734 TTTTACGGGTCGGCTTTGCG 61.844 55.000 0.00 0.00 0.00 4.85
183 184 0.109919 CTTTTACGGGTCGGCTTTGC 60.110 55.000 0.00 0.00 0.00 3.68
184 185 1.463444 CTCTTTTACGGGTCGGCTTTG 59.537 52.381 0.00 0.00 0.00 2.77
186 187 0.672711 GCTCTTTTACGGGTCGGCTT 60.673 55.000 0.00 0.00 0.00 4.35
189 190 2.589798 TATGCTCTTTTACGGGTCGG 57.410 50.000 0.00 0.00 0.00 4.79
191 192 4.272748 GTGGAATATGCTCTTTTACGGGTC 59.727 45.833 0.00 0.00 0.00 4.46
193 194 4.196193 TGTGGAATATGCTCTTTTACGGG 58.804 43.478 0.00 0.00 0.00 5.28
195 196 9.599322 GATATTTGTGGAATATGCTCTTTTACG 57.401 33.333 0.00 0.00 40.26 3.18
196 197 9.899226 GGATATTTGTGGAATATGCTCTTTTAC 57.101 33.333 3.86 0.00 42.52 2.01
224 225 3.367498 CCCGCAAAATGGATCCGTAAAAA 60.367 43.478 6.97 0.00 0.00 1.94
225 226 2.164624 CCCGCAAAATGGATCCGTAAAA 59.835 45.455 6.97 0.00 0.00 1.52
226 227 1.746220 CCCGCAAAATGGATCCGTAAA 59.254 47.619 6.97 0.00 0.00 2.01
228 229 0.464735 CCCCGCAAAATGGATCCGTA 60.465 55.000 6.97 0.00 0.00 4.02
229 230 1.752694 CCCCGCAAAATGGATCCGT 60.753 57.895 7.39 3.27 0.00 4.69
230 231 1.724582 GACCCCGCAAAATGGATCCG 61.725 60.000 7.39 0.00 0.00 4.18
231 232 0.395724 AGACCCCGCAAAATGGATCC 60.396 55.000 4.20 4.20 0.00 3.36
233 234 0.331278 TCAGACCCCGCAAAATGGAT 59.669 50.000 0.00 0.00 0.00 3.41
234 235 0.608035 GTCAGACCCCGCAAAATGGA 60.608 55.000 0.00 0.00 0.00 3.41
235 236 0.609131 AGTCAGACCCCGCAAAATGG 60.609 55.000 0.00 0.00 0.00 3.16
236 237 0.804989 GAGTCAGACCCCGCAAAATG 59.195 55.000 0.00 0.00 0.00 2.32
237 238 0.693049 AGAGTCAGACCCCGCAAAAT 59.307 50.000 0.00 0.00 0.00 1.82
238 239 0.250295 CAGAGTCAGACCCCGCAAAA 60.250 55.000 0.00 0.00 0.00 2.44
239 240 1.371183 CAGAGTCAGACCCCGCAAA 59.629 57.895 0.00 0.00 0.00 3.68
240 241 3.059982 CAGAGTCAGACCCCGCAA 58.940 61.111 0.00 0.00 0.00 4.85
242 243 4.459089 GGCAGAGTCAGACCCCGC 62.459 72.222 0.00 0.00 0.00 6.13
243 244 4.135153 CGGCAGAGTCAGACCCCG 62.135 72.222 0.00 1.18 0.00 5.73
244 245 4.459089 GCGGCAGAGTCAGACCCC 62.459 72.222 0.00 0.00 0.00 4.95
245 246 4.459089 GGCGGCAGAGTCAGACCC 62.459 72.222 3.07 0.00 0.00 4.46
246 247 4.803426 CGGCGGCAGAGTCAGACC 62.803 72.222 10.53 0.00 0.00 3.85
267 268 4.476410 GGTTTTGCGGGCTAGCGC 62.476 66.667 21.18 21.18 40.67 5.92
268 269 1.933115 AATGGTTTTGCGGGCTAGCG 61.933 55.000 9.00 0.00 40.67 4.26
270 271 2.741759 AAAATGGTTTTGCGGGCTAG 57.258 45.000 0.00 0.00 0.00 3.42
287 288 3.181522 ACGTGTTTACACTTCGCGAAAAA 60.182 39.130 23.54 16.75 44.34 1.94
289 290 1.925847 ACGTGTTTACACTTCGCGAAA 59.074 42.857 23.54 4.74 44.34 3.46
290 291 1.558741 ACGTGTTTACACTTCGCGAA 58.441 45.000 22.01 22.01 44.34 4.70
291 292 1.558741 AACGTGTTTACACTTCGCGA 58.441 45.000 3.71 3.71 44.34 5.87
293 294 2.212466 GCAAAACGTGTTTACACTTCGC 59.788 45.455 10.92 7.31 44.34 4.70
294 295 2.457537 CGCAAAACGTGTTTACACTTCG 59.542 45.455 10.92 1.26 44.34 3.79
296 297 2.419324 TCCGCAAAACGTGTTTACACTT 59.581 40.909 10.92 0.00 44.34 3.16
297 298 2.008329 TCCGCAAAACGTGTTTACACT 58.992 42.857 10.92 0.00 44.34 3.55
300 301 2.227556 CGATCCGCAAAACGTGTTTAC 58.772 47.619 0.00 0.00 41.42 2.01
301 302 1.194997 CCGATCCGCAAAACGTGTTTA 59.805 47.619 0.00 0.00 41.42 2.01
303 304 1.572447 CCGATCCGCAAAACGTGTT 59.428 52.632 0.00 0.00 41.42 3.32
304 305 2.961669 GCCGATCCGCAAAACGTGT 61.962 57.895 0.82 0.00 41.42 4.49
305 306 2.202298 GCCGATCCGCAAAACGTG 60.202 61.111 0.82 0.00 41.42 4.49
306 307 3.784412 CGCCGATCCGCAAAACGT 61.784 61.111 6.84 0.00 41.42 3.99
307 308 1.957711 TAACGCCGATCCGCAAAACG 61.958 55.000 6.84 0.00 43.15 3.60
308 309 0.375803 ATAACGCCGATCCGCAAAAC 59.624 50.000 6.84 0.00 0.00 2.43
311 312 0.935831 CGTATAACGCCGATCCGCAA 60.936 55.000 6.84 0.00 33.65 4.85
312 313 1.370778 CGTATAACGCCGATCCGCA 60.371 57.895 6.84 0.00 33.65 5.69
313 314 2.084681 CCGTATAACGCCGATCCGC 61.085 63.158 0.00 0.00 40.91 5.54
314 315 1.443194 CCCGTATAACGCCGATCCG 60.443 63.158 0.00 0.00 40.91 4.18
317 318 0.825010 AGACCCCGTATAACGCCGAT 60.825 55.000 0.00 0.00 40.91 4.18
318 319 1.453745 AGACCCCGTATAACGCCGA 60.454 57.895 0.00 0.00 40.91 5.54
319 320 1.299620 CAGACCCCGTATAACGCCG 60.300 63.158 0.00 0.00 40.91 6.46
320 321 1.593479 GCAGACCCCGTATAACGCC 60.593 63.158 0.00 0.00 40.91 5.68
322 323 1.952296 ACTAGCAGACCCCGTATAACG 59.048 52.381 0.00 0.00 42.11 3.18
323 324 2.954318 TCACTAGCAGACCCCGTATAAC 59.046 50.000 0.00 0.00 0.00 1.89
324 325 2.954318 GTCACTAGCAGACCCCGTATAA 59.046 50.000 4.92 0.00 0.00 0.98
326 327 1.063867 AGTCACTAGCAGACCCCGTAT 60.064 52.381 11.19 0.00 36.68 3.06
327 328 0.330604 AGTCACTAGCAGACCCCGTA 59.669 55.000 11.19 0.00 36.68 4.02
328 329 0.966370 GAGTCACTAGCAGACCCCGT 60.966 60.000 11.19 0.00 36.68 5.28
330 331 1.331399 GGGAGTCACTAGCAGACCCC 61.331 65.000 18.25 18.25 38.46 4.95
331 332 1.668101 CGGGAGTCACTAGCAGACCC 61.668 65.000 11.19 11.45 36.68 4.46
332 333 0.680280 TCGGGAGTCACTAGCAGACC 60.680 60.000 11.19 4.75 36.68 3.85
333 334 1.174783 TTCGGGAGTCACTAGCAGAC 58.825 55.000 7.63 7.63 36.26 3.51
334 335 2.145397 ATTCGGGAGTCACTAGCAGA 57.855 50.000 0.00 0.00 0.00 4.26
335 336 2.969628 AATTCGGGAGTCACTAGCAG 57.030 50.000 0.00 0.00 0.00 4.24
336 337 3.695830 AAAATTCGGGAGTCACTAGCA 57.304 42.857 0.00 0.00 0.00 3.49
355 356 9.364989 CAAAACAGATGTCCTTTTACTCAAAAA 57.635 29.630 0.00 0.00 33.33 1.94
356 357 7.491048 GCAAAACAGATGTCCTTTTACTCAAAA 59.509 33.333 0.00 0.00 32.73 2.44
358 359 6.096141 TGCAAAACAGATGTCCTTTTACTCAA 59.904 34.615 0.00 0.00 0.00 3.02
359 360 5.592282 TGCAAAACAGATGTCCTTTTACTCA 59.408 36.000 0.00 0.00 0.00 3.41
360 361 6.072112 TGCAAAACAGATGTCCTTTTACTC 57.928 37.500 0.00 0.00 0.00 2.59
362 363 7.358352 CGATTTGCAAAACAGATGTCCTTTTAC 60.358 37.037 17.19 0.00 0.00 2.01
365 366 4.984161 CGATTTGCAAAACAGATGTCCTTT 59.016 37.500 17.19 0.00 0.00 3.11
366 367 4.549458 CGATTTGCAAAACAGATGTCCTT 58.451 39.130 17.19 0.00 0.00 3.36
367 368 3.612479 GCGATTTGCAAAACAGATGTCCT 60.612 43.478 17.19 0.00 45.45 3.85
368 369 2.663119 GCGATTTGCAAAACAGATGTCC 59.337 45.455 17.19 0.00 45.45 4.02
369 370 3.959609 GCGATTTGCAAAACAGATGTC 57.040 42.857 17.19 6.30 45.45 3.06
398 399 1.351350 TCAGACAGAGAACTCGGGAGA 59.649 52.381 2.08 0.00 37.31 3.71
401 402 2.417924 CCAATCAGACAGAGAACTCGGG 60.418 54.545 6.87 0.00 34.09 5.14
402 403 2.417924 CCCAATCAGACAGAGAACTCGG 60.418 54.545 0.87 0.87 34.09 4.63
413 414 4.778143 ACGCCGGCCCAATCAGAC 62.778 66.667 23.46 0.00 0.00 3.51
689 712 2.029073 CACCGACTCGCAACCACT 59.971 61.111 0.00 0.00 0.00 4.00
801 842 4.551702 TGTGCTCAACTAATGGAAGCTA 57.448 40.909 0.00 0.00 0.00 3.32
816 857 2.147150 GGAAGGACTCTTGTTGTGCTC 58.853 52.381 0.00 0.00 35.08 4.26
825 866 6.001460 CGTATCTCTATCAGGAAGGACTCTT 58.999 44.000 0.00 0.00 35.62 2.85
896 1426 3.519107 TGAAGAAGTGGGTGCATATCAGA 59.481 43.478 0.00 0.00 0.00 3.27
916 1446 6.337356 TGTATGATTGATTTCGTGTAGCTGA 58.663 36.000 0.00 0.00 0.00 4.26
1056 1606 7.427030 CGTAGTCTTTTCTCTGTCTAAATCTCG 59.573 40.741 0.00 0.00 0.00 4.04
1340 1901 2.196742 TGGGTGAAGCATCCTCCTAT 57.803 50.000 0.00 0.00 35.30 2.57
1353 1914 2.927856 ACGCAGGTGGATGGGTGA 60.928 61.111 0.00 0.00 43.86 4.02
1410 1977 4.260375 CGGTGAGAAGAGAACACAAACAAG 60.260 45.833 0.00 0.00 36.42 3.16
1446 2050 9.747898 TTAACCCATGTAGTCTTGATGTAAAAT 57.252 29.630 0.00 0.00 0.00 1.82
1459 2063 4.161754 GGAGCAGTAGTTAACCCATGTAGT 59.838 45.833 0.88 0.00 0.00 2.73
1597 2212 5.757886 ACGTTACAGAAACACATTTCATGG 58.242 37.500 2.86 0.00 45.78 3.66
1727 5227 3.120979 CTCTCGGTCGCGCATACCA 62.121 63.158 24.09 12.90 36.78 3.25
1831 5335 3.882888 TGTGTCCAACTTCAATGAGGTTC 59.117 43.478 7.82 0.00 29.52 3.62
1918 5423 6.778834 TTGATCTGTTTGTGATAATGGCAT 57.221 33.333 0.00 0.00 0.00 4.40
1919 5424 6.587206 TTTGATCTGTTTGTGATAATGGCA 57.413 33.333 0.00 0.00 0.00 4.92
1934 5439 8.537049 TGTTAAATGCTGGAAATTTTGATCTG 57.463 30.769 0.00 0.00 0.00 2.90
1980 5485 1.019673 CGATTGGACAGCTCAATGGG 58.980 55.000 4.00 0.00 35.26 4.00
1989 5494 2.190578 GAGGGGGCGATTGGACAG 59.809 66.667 0.00 0.00 0.00 3.51
2002 5507 4.400251 AGAGTGGGACGGGGAGGG 62.400 72.222 0.00 0.00 0.00 4.30
2005 5510 3.273654 AGGAGAGTGGGACGGGGA 61.274 66.667 0.00 0.00 0.00 4.81
2006 5511 2.760385 GAGGAGAGTGGGACGGGG 60.760 72.222 0.00 0.00 0.00 5.73
2007 5512 2.760385 GGAGGAGAGTGGGACGGG 60.760 72.222 0.00 0.00 0.00 5.28
2009 5514 1.304547 AGTGGAGGAGAGTGGGACG 60.305 63.158 0.00 0.00 0.00 4.79
2010 5515 0.251832 TCAGTGGAGGAGAGTGGGAC 60.252 60.000 0.00 0.00 0.00 4.46
2011 5516 0.487325 TTCAGTGGAGGAGAGTGGGA 59.513 55.000 0.00 0.00 0.00 4.37
2012 5517 1.577736 ATTCAGTGGAGGAGAGTGGG 58.422 55.000 0.00 0.00 0.00 4.61
2013 5518 2.093235 GGAATTCAGTGGAGGAGAGTGG 60.093 54.545 7.93 0.00 0.00 4.00
2014 5519 2.836981 AGGAATTCAGTGGAGGAGAGTG 59.163 50.000 7.93 0.00 0.00 3.51
2019 5524 2.555227 GCCAAAGGAATTCAGTGGAGGA 60.555 50.000 19.90 0.00 0.00 3.71
2020 5525 1.821136 GCCAAAGGAATTCAGTGGAGG 59.179 52.381 19.90 9.87 0.00 4.30
2025 5832 3.826729 GGTAGTTGCCAAAGGAATTCAGT 59.173 43.478 7.93 0.00 0.00 3.41
2027 5834 3.838565 TGGTAGTTGCCAAAGGAATTCA 58.161 40.909 7.93 0.00 35.25 2.57
2047 5854 5.220605 GGACGGTGCTAATTAAAGCTAGTTG 60.221 44.000 2.08 0.00 43.19 3.16
2056 5863 3.709653 AGGATGAGGACGGTGCTAATTAA 59.290 43.478 0.88 0.00 0.00 1.40
2057 5864 3.305720 AGGATGAGGACGGTGCTAATTA 58.694 45.455 0.88 0.00 0.00 1.40
2060 5867 1.568504 AAGGATGAGGACGGTGCTAA 58.431 50.000 0.88 0.00 0.00 3.09
2063 5870 0.321653 ACAAAGGATGAGGACGGTGC 60.322 55.000 0.00 0.00 0.00 5.01
2070 5877 5.308825 ACTGAGTAAACACAAAGGATGAGG 58.691 41.667 0.00 0.00 0.00 3.86
2071 5878 9.653287 TTATACTGAGTAAACACAAAGGATGAG 57.347 33.333 0.00 0.00 0.00 2.90
2097 5904 9.606631 CCTCTTTGAGTAGCTTGAATAGTTATT 57.393 33.333 0.00 0.00 0.00 1.40
2098 5905 8.982723 TCCTCTTTGAGTAGCTTGAATAGTTAT 58.017 33.333 0.00 0.00 0.00 1.89
2099 5906 8.362464 TCCTCTTTGAGTAGCTTGAATAGTTA 57.638 34.615 0.00 0.00 0.00 2.24
2100 5907 7.246171 TCCTCTTTGAGTAGCTTGAATAGTT 57.754 36.000 0.00 0.00 0.00 2.24
2101 5908 6.859112 TCCTCTTTGAGTAGCTTGAATAGT 57.141 37.500 0.00 0.00 0.00 2.12
2110 5917 6.458888 GCCAAACATATTCCTCTTTGAGTAGC 60.459 42.308 0.00 0.00 0.00 3.58
2121 5928 4.141869 GCAATTCCTGCCAAACATATTCCT 60.142 41.667 0.00 0.00 46.13 3.36
2141 5948 7.818446 TGTGTGTAGGTATTTATTACGAAGCAA 59.182 33.333 0.00 0.00 0.00 3.91
2160 5967 9.081204 TCACCTAGTATAAAGTCTTTGTGTGTA 57.919 33.333 8.14 0.00 0.00 2.90
2164 5971 7.011482 GCCATCACCTAGTATAAAGTCTTTGTG 59.989 40.741 8.14 5.85 0.00 3.33
2165 5972 7.048512 GCCATCACCTAGTATAAAGTCTTTGT 58.951 38.462 8.14 3.93 0.00 2.83
2167 5974 7.439108 AGCCATCACCTAGTATAAAGTCTTT 57.561 36.000 2.81 2.81 0.00 2.52
2216 6023 1.057851 TTCACCCTCAACCGACCCTT 61.058 55.000 0.00 0.00 0.00 3.95
2225 6032 2.838637 AAACCAACCTTCACCCTCAA 57.161 45.000 0.00 0.00 0.00 3.02
2241 6048 5.176592 ACGAAGTCCCTCAGCTAAATAAAC 58.823 41.667 0.00 0.00 29.74 2.01
2252 6059 2.742348 TGCCTATTACGAAGTCCCTCA 58.258 47.619 0.00 0.00 43.93 3.86
2259 6066 5.408604 AGTTTGACTGTTGCCTATTACGAAG 59.591 40.000 0.00 0.00 0.00 3.79
2261 6068 4.890088 AGTTTGACTGTTGCCTATTACGA 58.110 39.130 0.00 0.00 0.00 3.43
2262 6069 6.715344 TTAGTTTGACTGTTGCCTATTACG 57.285 37.500 0.00 0.00 0.00 3.18
2263 6070 7.867752 TGTTTAGTTTGACTGTTGCCTATTAC 58.132 34.615 0.00 0.00 0.00 1.89
2264 6071 8.453238 TTGTTTAGTTTGACTGTTGCCTATTA 57.547 30.769 0.00 0.00 0.00 0.98
2265 6072 6.952773 TGTTTAGTTTGACTGTTGCCTATT 57.047 33.333 0.00 0.00 0.00 1.73
2267 6074 6.952773 ATTGTTTAGTTTGACTGTTGCCTA 57.047 33.333 0.00 0.00 0.00 3.93
2268 6075 5.852282 ATTGTTTAGTTTGACTGTTGCCT 57.148 34.783 0.00 0.00 0.00 4.75
2269 6076 6.902224 AAATTGTTTAGTTTGACTGTTGCC 57.098 33.333 0.00 0.00 0.00 4.52
2289 6097 9.942526 ATTCCTATCCAAGTATCTTTCCAAAAT 57.057 29.630 0.00 0.00 0.00 1.82
2296 6104 6.226787 CGAGCATTCCTATCCAAGTATCTTT 58.773 40.000 0.00 0.00 0.00 2.52
2347 6161 9.998106 ATGTTCTTTCGCTACTTAATGGTATAT 57.002 29.630 0.00 0.00 0.00 0.86
2348 6162 9.256477 CATGTTCTTTCGCTACTTAATGGTATA 57.744 33.333 0.00 0.00 0.00 1.47
2349 6163 7.769044 ACATGTTCTTTCGCTACTTAATGGTAT 59.231 33.333 0.00 0.00 0.00 2.73
2350 6164 7.101054 ACATGTTCTTTCGCTACTTAATGGTA 58.899 34.615 0.00 0.00 0.00 3.25
2351 6165 5.938125 ACATGTTCTTTCGCTACTTAATGGT 59.062 36.000 0.00 0.00 0.00 3.55
2352 6166 6.422776 ACATGTTCTTTCGCTACTTAATGG 57.577 37.500 0.00 0.00 0.00 3.16
2353 6167 7.803189 ACAAACATGTTCTTTCGCTACTTAATG 59.197 33.333 12.39 3.01 0.00 1.90
2365 6179 4.160252 ACAGAAGCCACAAACATGTTCTTT 59.840 37.500 12.39 0.00 0.00 2.52
2368 6182 3.181487 ACACAGAAGCCACAAACATGTTC 60.181 43.478 12.39 0.00 0.00 3.18
2369 6183 2.760092 ACACAGAAGCCACAAACATGTT 59.240 40.909 4.92 4.92 0.00 2.71
2373 6187 3.876914 CTCTAACACAGAAGCCACAAACA 59.123 43.478 0.00 0.00 31.12 2.83
2376 6190 2.810400 GCCTCTAACACAGAAGCCACAA 60.810 50.000 0.00 0.00 35.05 3.33
2380 6194 0.037232 ACGCCTCTAACACAGAAGCC 60.037 55.000 0.00 0.00 37.42 4.35
2397 6211 7.076842 AGAAACAGAATATTCAATGGACACG 57.923 36.000 17.56 0.00 0.00 4.49
2399 6213 9.513906 TTGTAGAAACAGAATATTCAATGGACA 57.486 29.630 17.56 9.20 36.83 4.02
2400 6214 9.994432 CTTGTAGAAACAGAATATTCAATGGAC 57.006 33.333 17.56 7.01 36.83 4.02
2403 6217 9.282247 GTGCTTGTAGAAACAGAATATTCAATG 57.718 33.333 17.56 10.21 36.83 2.82
2404 6218 9.236006 AGTGCTTGTAGAAACAGAATATTCAAT 57.764 29.630 17.56 2.09 36.83 2.57
2415 6229 4.217550 GCCCAATAAGTGCTTGTAGAAACA 59.782 41.667 0.00 0.00 0.00 2.83
2471 6285 4.258543 TGTACCCTGTGCTAAACATAAGC 58.741 43.478 0.00 0.00 38.39 3.09
2473 6287 5.189928 CCATGTACCCTGTGCTAAACATAA 58.810 41.667 0.00 0.00 38.39 1.90
2475 6289 3.010138 ACCATGTACCCTGTGCTAAACAT 59.990 43.478 0.00 0.00 38.39 2.71
2476 6290 2.373836 ACCATGTACCCTGTGCTAAACA 59.626 45.455 0.00 0.00 37.22 2.83
2477 6291 3.067684 ACCATGTACCCTGTGCTAAAC 57.932 47.619 0.00 0.00 0.00 2.01
2478 6292 3.799432 AACCATGTACCCTGTGCTAAA 57.201 42.857 0.00 0.00 0.00 1.85
2479 6293 6.757173 ATATAACCATGTACCCTGTGCTAA 57.243 37.500 0.00 0.00 0.00 3.09
2480 6294 9.723760 ATATATATAACCATGTACCCTGTGCTA 57.276 33.333 0.00 0.00 0.00 3.49
2481 6295 6.952605 ATATATAACCATGTACCCTGTGCT 57.047 37.500 0.00 0.00 0.00 4.40
2482 6296 9.109393 CAATATATATAACCATGTACCCTGTGC 57.891 37.037 0.00 0.00 0.00 4.57
2483 6297 9.613428 CCAATATATATAACCATGTACCCTGTG 57.387 37.037 0.00 0.00 0.00 3.66
2502 6316 9.748708 GTTACAAAGTCGGTATGTACCAATATA 57.251 33.333 9.69 0.00 46.80 0.86
2504 6318 7.609960 TGTTACAAAGTCGGTATGTACCAATA 58.390 34.615 9.69 0.00 46.80 1.90
2505 6319 6.465948 TGTTACAAAGTCGGTATGTACCAAT 58.534 36.000 9.69 0.00 46.80 3.16
2506 6320 5.851720 TGTTACAAAGTCGGTATGTACCAA 58.148 37.500 9.69 0.00 46.80 3.67
2508 6322 5.521372 GGATGTTACAAAGTCGGTATGTACC 59.479 44.000 0.00 0.00 42.98 3.34
2509 6323 5.521372 GGGATGTTACAAAGTCGGTATGTAC 59.479 44.000 0.00 0.00 29.78 2.90
2511 6325 4.020039 TGGGATGTTACAAAGTCGGTATGT 60.020 41.667 0.00 0.00 0.00 2.29
2513 6327 4.829872 TGGGATGTTACAAAGTCGGTAT 57.170 40.909 0.00 0.00 0.00 2.73
2514 6328 4.620589 TTGGGATGTTACAAAGTCGGTA 57.379 40.909 0.00 0.00 0.00 4.02
2515 6329 3.495434 TTGGGATGTTACAAAGTCGGT 57.505 42.857 0.00 0.00 0.00 4.69
2516 6330 5.385509 AAATTGGGATGTTACAAAGTCGG 57.614 39.130 0.00 0.00 0.00 4.79
2517 6331 6.920758 TGAAAAATTGGGATGTTACAAAGTCG 59.079 34.615 0.00 0.00 0.00 4.18
2635 6822 1.555075 CGAAATCCCCAACTCTCTCCA 59.445 52.381 0.00 0.00 0.00 3.86
2863 7189 7.554118 TGACCCTAAATGCAATTTTGAAAAACA 59.446 29.630 0.00 0.00 46.10 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.