Multiple sequence alignment - TraesCS2D01G148400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G148400 chr2D 100.000 6116 0 0 1 6116 89877470 89871355 0.000000e+00 11295.0
1 TraesCS2D01G148400 chr2D 94.810 2216 105 9 863 3074 142216325 142218534 0.000000e+00 3446.0
2 TraesCS2D01G148400 chr2D 82.374 278 44 5 5839 6114 306326661 306326387 2.850000e-58 237.0
3 TraesCS2D01G148400 chr2D 84.810 237 33 2 5847 6083 563758787 563758554 1.020000e-57 235.0
4 TraesCS2D01G148400 chr2A 94.623 5486 198 51 1 5439 89492390 89486955 0.000000e+00 8407.0
5 TraesCS2D01G148400 chr2B 93.709 4562 189 46 1 4526 142378636 142374137 0.000000e+00 6745.0
6 TraesCS2D01G148400 chr2B 87.453 1339 93 34 4558 5841 142374139 142372821 0.000000e+00 1472.0
7 TraesCS2D01G148400 chr2B 80.612 98 15 2 5509 5602 136146582 136146485 8.500000e-09 73.1
8 TraesCS2D01G148400 chr7D 95.171 2216 98 7 863 3074 83434788 83436998 0.000000e+00 3491.0
9 TraesCS2D01G148400 chr7D 94.856 2216 103 8 863 3074 292322914 292325122 0.000000e+00 3450.0
10 TraesCS2D01G148400 chr7D 83.158 285 37 6 5832 6114 631340014 631339739 3.660000e-62 250.0
11 TraesCS2D01G148400 chrUn 95.081 2216 101 7 863 3074 19136650 19138861 0.000000e+00 3482.0
12 TraesCS2D01G148400 chr5A 94.991 2216 100 7 863 3074 427853894 427851686 0.000000e+00 3467.0
13 TraesCS2D01G148400 chr6A 94.810 2216 106 6 863 3074 517540134 517537924 0.000000e+00 3446.0
14 TraesCS2D01G148400 chr4D 94.723 2217 102 11 863 3074 215025472 215023266 0.000000e+00 3432.0
15 TraesCS2D01G148400 chr7A 83.150 273 44 2 5832 6103 632480112 632479841 1.320000e-61 248.0
16 TraesCS2D01G148400 chr6D 83.704 270 29 8 5848 6116 367323624 367323369 2.200000e-59 241.0
17 TraesCS2D01G148400 chr6D 83.333 270 30 9 5848 6116 367541623 367541368 1.020000e-57 235.0
18 TraesCS2D01G148400 chr4A 83.936 249 37 2 5848 6095 162785029 162784783 1.020000e-57 235.0
19 TraesCS2D01G148400 chr1D 81.949 277 45 3 5839 6114 39029810 39029538 4.770000e-56 230.0
20 TraesCS2D01G148400 chr1D 78.873 142 22 6 5704 5841 80549582 80549445 8.440000e-14 89.8
21 TraesCS2D01G148400 chr3D 81.071 280 46 4 5841 6114 351453818 351454096 3.710000e-52 217.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G148400 chr2D 89871355 89877470 6115 True 11295.0 11295 100.000 1 6116 1 chr2D.!!$R1 6115
1 TraesCS2D01G148400 chr2D 142216325 142218534 2209 False 3446.0 3446 94.810 863 3074 1 chr2D.!!$F1 2211
2 TraesCS2D01G148400 chr2A 89486955 89492390 5435 True 8407.0 8407 94.623 1 5439 1 chr2A.!!$R1 5438
3 TraesCS2D01G148400 chr2B 142372821 142378636 5815 True 4108.5 6745 90.581 1 5841 2 chr2B.!!$R2 5840
4 TraesCS2D01G148400 chr7D 83434788 83436998 2210 False 3491.0 3491 95.171 863 3074 1 chr7D.!!$F1 2211
5 TraesCS2D01G148400 chr7D 292322914 292325122 2208 False 3450.0 3450 94.856 863 3074 1 chr7D.!!$F2 2211
6 TraesCS2D01G148400 chrUn 19136650 19138861 2211 False 3482.0 3482 95.081 863 3074 1 chrUn.!!$F1 2211
7 TraesCS2D01G148400 chr5A 427851686 427853894 2208 True 3467.0 3467 94.991 863 3074 1 chr5A.!!$R1 2211
8 TraesCS2D01G148400 chr6A 517537924 517540134 2210 True 3446.0 3446 94.810 863 3074 1 chr6A.!!$R1 2211
9 TraesCS2D01G148400 chr4D 215023266 215025472 2206 True 3432.0 3432 94.723 863 3074 1 chr4D.!!$R1 2211

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
277 280 0.041090 ATTGGGCCTTGGAATCGGTT 59.959 50.000 4.53 0.0 0.00 4.44 F
279 282 1.001393 GGGCCTTGGAATCGGTTCA 60.001 57.895 11.19 0.0 36.01 3.18 F
284 287 1.005984 TTGGAATCGGTTCACGCGA 60.006 52.632 15.93 0.0 43.86 5.87 F
294 297 1.006688 TTCACGCGAGCAAGCAGTA 60.007 52.632 15.93 0.0 36.85 2.74 F
337 340 1.073629 TGGAGTGGGTGGGTGGTTA 60.074 57.895 0.00 0.0 0.00 2.85 F
2396 2484 0.686224 CAGCAAAATTTCAGGGGCCA 59.314 50.000 4.39 0.0 0.00 5.36 F
2526 2614 0.807667 CTCTTGGATTGGCTCGTCGG 60.808 60.000 0.00 0.0 0.00 4.79 F
3842 3944 0.673956 GTTGGAGGGTCTCGAAAGCC 60.674 60.000 0.00 0.0 30.66 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2221 2306 1.332195 AGTTTTCCTCCAAAGCCAGC 58.668 50.000 0.00 0.00 0.00 4.85 R
2286 2374 5.163632 CCAACAAAGGCAAAATTTCAGCTTT 60.164 36.000 13.28 10.16 0.00 3.51 R
2334 2422 7.620880 AGCACCATTTCAAATCTGTAGTACTA 58.379 34.615 0.00 0.00 0.00 1.82 R
2396 2484 0.537143 TGCTCAACAAACCATCGGCT 60.537 50.000 0.00 0.00 0.00 5.52 R
2422 2510 5.106118 GGAAAATCAGGCAGAACTCCTAAAC 60.106 44.000 0.00 0.00 31.52 2.01 R
3287 3387 0.035458 AGGAAACTGGGAGCAGTTCG 59.965 55.000 0.00 0.00 43.83 3.95 R
4598 4704 1.542492 AAGGAGCAGAACAATGGCAG 58.458 50.000 0.00 0.00 0.00 4.85 R
5694 5857 0.035820 TTTACGGGTCACAGATGCCC 60.036 55.000 0.00 0.00 38.27 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 25 2.037121 GCAGCTCCCCTTTCTCTATCTC 59.963 54.545 0.00 0.00 0.00 2.75
33 35 3.406728 TTCTCTATCTCGAGCGTGTTG 57.593 47.619 7.81 0.00 0.00 3.33
95 97 4.785453 CTGCTTGGGACGGGAGGC 62.785 72.222 0.00 0.00 0.00 4.70
166 169 2.882137 CGTTTTGGTGCCTTTTCCTCTA 59.118 45.455 0.00 0.00 0.00 2.43
264 267 1.805943 GCAAATGTTGTTCCATTGGGC 59.194 47.619 2.09 0.00 35.30 5.36
271 274 0.189574 TGTTCCATTGGGCCTTGGAA 59.810 50.000 27.30 27.30 46.98 3.53
273 276 1.864669 TTCCATTGGGCCTTGGAATC 58.135 50.000 27.30 0.00 44.92 2.52
275 278 1.394266 CCATTGGGCCTTGGAATCGG 61.394 60.000 18.04 4.83 34.81 4.18
276 279 0.684153 CATTGGGCCTTGGAATCGGT 60.684 55.000 4.53 0.00 0.00 4.69
277 280 0.041090 ATTGGGCCTTGGAATCGGTT 59.959 50.000 4.53 0.00 0.00 4.44
279 282 1.001393 GGGCCTTGGAATCGGTTCA 60.001 57.895 11.19 0.00 36.01 3.18
280 283 1.313091 GGGCCTTGGAATCGGTTCAC 61.313 60.000 11.19 0.27 36.01 3.18
281 284 1.644786 GGCCTTGGAATCGGTTCACG 61.645 60.000 11.19 0.00 46.11 4.35
282 285 1.794222 CCTTGGAATCGGTTCACGC 59.206 57.895 11.19 0.00 43.86 5.34
283 286 1.419922 CTTGGAATCGGTTCACGCG 59.580 57.895 11.19 3.53 43.86 6.01
284 287 1.005984 TTGGAATCGGTTCACGCGA 60.006 52.632 15.93 0.00 43.86 5.87
285 288 1.011968 TTGGAATCGGTTCACGCGAG 61.012 55.000 15.93 4.59 43.86 5.03
286 289 2.695646 GAATCGGTTCACGCGAGC 59.304 61.111 15.93 0.00 43.86 5.03
287 290 2.048597 AATCGGTTCACGCGAGCA 60.049 55.556 15.93 0.00 43.86 4.26
288 291 1.623081 GAATCGGTTCACGCGAGCAA 61.623 55.000 15.93 0.00 43.86 3.91
289 292 1.626654 AATCGGTTCACGCGAGCAAG 61.627 55.000 15.93 0.00 43.86 4.01
290 293 4.430423 CGGTTCACGCGAGCAAGC 62.430 66.667 15.93 10.72 34.82 4.01
291 294 3.345808 GGTTCACGCGAGCAAGCA 61.346 61.111 15.93 0.00 36.85 3.91
292 295 2.171940 GTTCACGCGAGCAAGCAG 59.828 61.111 15.93 0.18 36.85 4.24
293 296 2.280119 TTCACGCGAGCAAGCAGT 60.280 55.556 15.93 0.74 36.85 4.40
294 297 1.006688 TTCACGCGAGCAAGCAGTA 60.007 52.632 15.93 0.00 36.85 2.74
295 298 1.282248 TTCACGCGAGCAAGCAGTAC 61.282 55.000 15.93 0.00 36.85 2.73
296 299 2.021584 CACGCGAGCAAGCAGTACA 61.022 57.895 15.93 0.00 36.85 2.90
335 338 3.175710 GTGGAGTGGGTGGGTGGT 61.176 66.667 0.00 0.00 0.00 4.16
336 339 2.369015 TGGAGTGGGTGGGTGGTT 60.369 61.111 0.00 0.00 0.00 3.67
337 340 1.073629 TGGAGTGGGTGGGTGGTTA 60.074 57.895 0.00 0.00 0.00 2.85
338 341 1.377612 GGAGTGGGTGGGTGGTTAC 59.622 63.158 0.00 0.00 0.00 2.50
361 364 6.637657 ACTGGTTAGCAATACAACCTAGTAC 58.362 40.000 5.21 0.00 43.84 2.73
392 401 2.113860 AGAGGCGCAAATTAAGAGCA 57.886 45.000 10.83 0.00 33.20 4.26
412 421 1.970917 AAGGCGCGCTTCGATTTCAG 61.971 55.000 32.29 0.00 41.67 3.02
452 468 1.860950 CCGTATGAAGCCGAGAATGTG 59.139 52.381 0.00 0.00 0.00 3.21
453 469 1.258982 CGTATGAAGCCGAGAATGTGC 59.741 52.381 0.00 0.00 0.00 4.57
454 470 1.599542 GTATGAAGCCGAGAATGTGCC 59.400 52.381 0.00 0.00 0.00 5.01
455 471 1.091771 ATGAAGCCGAGAATGTGCCG 61.092 55.000 0.00 0.00 0.00 5.69
458 474 1.298859 AAGCCGAGAATGTGCCGTTC 61.299 55.000 0.00 0.37 0.00 3.95
464 480 3.428452 CCGAGAATGTGCCGTTCTTAGTA 60.428 47.826 9.97 0.00 39.47 1.82
481 497 7.761038 TCTTAGTATGAGAAACTGAGTGTGA 57.239 36.000 0.00 0.00 33.53 3.58
495 511 9.520515 AAACTGAGTGTGAATTTTATATCCAGT 57.479 29.630 0.00 0.00 0.00 4.00
534 550 5.689961 CCAACTATTGCAAAAACTTAACGCT 59.310 36.000 1.71 0.00 0.00 5.07
535 551 6.200097 CCAACTATTGCAAAAACTTAACGCTT 59.800 34.615 1.71 0.00 0.00 4.68
550 566 8.865590 ACTTAACGCTTTATGTGTTTTTCAAT 57.134 26.923 2.54 0.00 46.01 2.57
575 630 5.815581 ACTATATTGCTGTTGGAAGGTCAA 58.184 37.500 0.00 0.00 0.00 3.18
595 675 9.971922 AGGTCAATATTTTTATTCATTAGCAGC 57.028 29.630 0.00 0.00 0.00 5.25
596 676 9.971922 GGTCAATATTTTTATTCATTAGCAGCT 57.028 29.630 0.00 0.00 0.00 4.24
651 731 8.842280 ACAATTAAACTGACACCGAAGAATTTA 58.158 29.630 0.00 0.00 0.00 1.40
661 741 7.065803 TGACACCGAAGAATTTATCCTTGATTC 59.934 37.037 0.00 0.00 0.00 2.52
664 744 7.066284 CACCGAAGAATTTATCCTTGATTCAGT 59.934 37.037 0.00 0.00 33.34 3.41
678 758 6.860023 CCTTGATTCAGTTGTTTCAACAGATC 59.140 38.462 13.74 12.60 40.50 2.75
694 774 2.791560 CAGATCGTAACCAGAATCAGCG 59.208 50.000 0.00 0.00 0.00 5.18
1030 1115 6.317789 TGTATGGCTTTTGTTCTCTTTCTG 57.682 37.500 0.00 0.00 0.00 3.02
1243 1328 7.710044 CAGCAGTGATCTTTTGATATACTGACT 59.290 37.037 18.52 14.08 46.26 3.41
1248 1333 8.547069 GTGATCTTTTGATATACTGACTCTTGC 58.453 37.037 0.00 0.00 39.67 4.01
1249 1334 8.260114 TGATCTTTTGATATACTGACTCTTGCA 58.740 33.333 0.00 0.00 39.67 4.08
1469 1554 2.069273 CACTTAAGGAGTCTGTTGCCG 58.931 52.381 7.53 0.00 36.10 5.69
2221 2306 2.557924 TGTGTATTTTCCCTGCTTGCTG 59.442 45.455 0.00 0.00 0.00 4.41
2286 2374 2.725637 TCTGCCATGATTAAGCAAGCA 58.274 42.857 17.52 17.52 35.79 3.91
2295 2383 5.199024 TGATTAAGCAAGCAAAGCTGAAA 57.801 34.783 0.00 0.00 42.53 2.69
2334 2422 5.181748 GGCTTCAGAAACAGACTATCACAT 58.818 41.667 0.00 0.00 0.00 3.21
2396 2484 0.686224 CAGCAAAATTTCAGGGGCCA 59.314 50.000 4.39 0.00 0.00 5.36
2422 2510 2.823984 TGGTTTGTTGAGCAGCAAATG 58.176 42.857 14.06 0.00 42.04 2.32
2446 2534 3.078891 AGGAGTTCTGCCTGATTTTCC 57.921 47.619 0.00 0.00 33.59 3.13
2526 2614 0.807667 CTCTTGGATTGGCTCGTCGG 60.808 60.000 0.00 0.00 0.00 4.79
2613 2707 7.654520 CCATTTCTTCATTTTCACACATCACTT 59.345 33.333 0.00 0.00 0.00 3.16
2683 2777 1.082117 AGAACGAACTAATGCCCGCG 61.082 55.000 0.00 0.00 0.00 6.46
2710 2804 4.948621 AGATTGAAAATGCTAGAGCTGCTT 59.051 37.500 2.53 0.00 42.66 3.91
2848 2942 2.489329 CACCATGCTTACCTGGAACTTG 59.511 50.000 0.00 0.00 36.35 3.16
2849 2943 1.474077 CCATGCTTACCTGGAACTTGC 59.526 52.381 0.00 0.00 34.24 4.01
3268 3368 5.483811 TGTTGCCGTGTTTCTCATTCTATA 58.516 37.500 0.00 0.00 0.00 1.31
3287 3387 0.752658 AAGTTGGTGCTTTTGGCCTC 59.247 50.000 3.32 0.00 40.92 4.70
3345 3445 7.281841 TCCATGTATGTTAAGAGATTGATGCA 58.718 34.615 0.00 0.00 0.00 3.96
3511 3611 5.929415 GCAAGGTAGACTTCATAGGCTTATC 59.071 44.000 0.00 0.00 35.73 1.75
3520 3620 6.636705 ACTTCATAGGCTTATCGTGTTGTTA 58.363 36.000 0.00 0.00 0.00 2.41
3842 3944 0.673956 GTTGGAGGGTCTCGAAAGCC 60.674 60.000 0.00 0.00 30.66 4.35
4548 4654 2.883026 ACTTGTACTCCTCAGCTCACT 58.117 47.619 0.00 0.00 0.00 3.41
4549 4655 2.560542 ACTTGTACTCCTCAGCTCACTG 59.439 50.000 0.00 0.00 45.95 3.66
4598 4704 4.507756 GCCTTCAAGTCATGTTTTTGAACC 59.492 41.667 13.86 7.85 36.28 3.62
4640 4746 3.892284 TGCTAGGTTGTTGTCCTTCAAA 58.108 40.909 0.00 0.00 37.81 2.69
4747 4853 4.591072 GTCATAGCCAGGGAATTCTACTCT 59.409 45.833 5.23 2.14 0.00 3.24
4814 4929 3.326588 ACTGGTTGTGTTACTGGCTATGA 59.673 43.478 0.00 0.00 0.00 2.15
4817 4932 4.069304 GGTTGTGTTACTGGCTATGACAA 58.931 43.478 0.00 0.00 0.00 3.18
4823 4938 4.513692 TGTTACTGGCTATGACAACACAAC 59.486 41.667 0.00 0.00 0.00 3.32
4919 5049 1.676967 GGAAGGCCTCAGCTTGGTG 60.677 63.158 5.23 0.00 39.73 4.17
4920 5050 1.073897 GAAGGCCTCAGCTTGGTGT 59.926 57.895 5.23 0.00 39.73 4.16
4924 5054 2.924105 GCCTCAGCTTGGTGTTGGC 61.924 63.158 17.37 17.37 35.50 4.52
4925 5055 1.228367 CCTCAGCTTGGTGTTGGCT 60.228 57.895 0.00 0.00 36.70 4.75
5026 5156 4.392445 CCATTCGTATTTTTGGACCGTGTA 59.608 41.667 0.00 0.00 0.00 2.90
5216 5349 3.352652 GCGTCTGTTTAGTAGTAGCTCG 58.647 50.000 0.00 0.00 0.00 5.03
5285 5422 3.059884 TCTTCTTTCACGTCATCACTGC 58.940 45.455 0.00 0.00 0.00 4.40
5330 5472 5.179555 GGTAGAGCACGTCTTTTGATTTTCT 59.820 40.000 0.00 0.00 36.64 2.52
5331 5473 5.100751 AGAGCACGTCTTTTGATTTTCTG 57.899 39.130 0.00 0.00 27.07 3.02
5332 5474 4.816385 AGAGCACGTCTTTTGATTTTCTGA 59.184 37.500 0.00 0.00 27.07 3.27
5333 5475 4.848757 AGCACGTCTTTTGATTTTCTGAC 58.151 39.130 0.00 0.00 0.00 3.51
5334 5476 4.335315 AGCACGTCTTTTGATTTTCTGACA 59.665 37.500 0.00 0.00 0.00 3.58
5335 5477 4.437820 GCACGTCTTTTGATTTTCTGACAC 59.562 41.667 0.00 0.00 0.00 3.67
5336 5478 5.568482 CACGTCTTTTGATTTTCTGACACA 58.432 37.500 0.00 0.00 0.00 3.72
5382 5525 7.096551 GTGTGCCAGTTCCATTGTAATTTTAT 58.903 34.615 0.00 0.00 0.00 1.40
5383 5526 8.247562 GTGTGCCAGTTCCATTGTAATTTTATA 58.752 33.333 0.00 0.00 0.00 0.98
5384 5527 8.247562 TGTGCCAGTTCCATTGTAATTTTATAC 58.752 33.333 0.00 0.00 0.00 1.47
5421 5565 3.632643 ATGTGATGCTGATGTACACCA 57.367 42.857 0.00 0.00 0.00 4.17
5440 5584 0.813184 ATCATGCCCAAGTTGCTTCG 59.187 50.000 0.00 0.00 0.00 3.79
5465 5609 0.250338 GAACCTTGGCCTGTTCGTCT 60.250 55.000 3.32 0.00 32.40 4.18
5482 5626 1.390463 GTCTGAGCAAATCGTTCGTCC 59.610 52.381 0.00 0.00 0.00 4.79
5491 5635 3.438297 AATCGTTCGTCCCTGACTATG 57.562 47.619 0.00 0.00 0.00 2.23
5492 5636 2.118313 TCGTTCGTCCCTGACTATGA 57.882 50.000 0.00 0.00 0.00 2.15
5493 5637 1.741706 TCGTTCGTCCCTGACTATGAC 59.258 52.381 0.00 0.00 0.00 3.06
5496 5640 1.807226 CGTCCCTGACTATGACGCA 59.193 57.895 0.00 0.00 44.29 5.24
5497 5641 0.248661 CGTCCCTGACTATGACGCAG 60.249 60.000 0.00 0.00 44.29 5.18
5498 5642 0.528684 GTCCCTGACTATGACGCAGC 60.529 60.000 0.00 0.00 0.00 5.25
5499 5643 0.684479 TCCCTGACTATGACGCAGCT 60.684 55.000 0.00 0.00 0.00 4.24
5500 5644 0.529337 CCCTGACTATGACGCAGCTG 60.529 60.000 10.11 10.11 0.00 4.24
5501 5645 1.150567 CCTGACTATGACGCAGCTGC 61.151 60.000 29.12 29.12 37.78 5.25
5502 5646 1.150567 CTGACTATGACGCAGCTGCC 61.151 60.000 32.07 19.77 37.91 4.85
5503 5647 2.202797 ACTATGACGCAGCTGCCG 60.203 61.111 32.07 26.91 37.91 5.69
5504 5648 2.963854 CTATGACGCAGCTGCCGG 60.964 66.667 32.07 21.48 37.91 6.13
5505 5649 3.723235 CTATGACGCAGCTGCCGGT 62.723 63.158 32.07 24.64 37.91 5.28
5506 5650 3.716539 TATGACGCAGCTGCCGGTC 62.717 63.158 32.07 30.39 37.91 4.79
5584 5739 1.734748 GAAGACCTCCCCGACGATC 59.265 63.158 0.00 0.00 0.00 3.69
5602 5757 0.257328 TCCTCTCGCAGACATCCTCT 59.743 55.000 0.00 0.00 0.00 3.69
5620 5783 3.209410 CTCTGCAGAAAACAACTGGTCT 58.791 45.455 18.85 0.00 36.09 3.85
5642 5805 5.011738 TCTGATACCTTCGTGTTCTTTTCCT 59.988 40.000 0.00 0.00 0.00 3.36
5656 5819 5.744666 TCTTTTCCTCGAACGTTGAAAAT 57.255 34.783 18.77 0.00 36.46 1.82
5668 5831 5.099484 ACGTTGAAAATTTTCCGGTACTC 57.901 39.130 24.51 2.27 36.36 2.59
5671 5834 4.376225 TGAAAATTTTCCGGTACTCCCT 57.624 40.909 24.51 0.00 36.36 4.20
5685 5848 5.618236 GGTACTCCCTGACAAGTTACTTTT 58.382 41.667 0.00 0.00 0.00 2.27
5687 5850 6.204301 GGTACTCCCTGACAAGTTACTTTTTC 59.796 42.308 0.00 0.00 0.00 2.29
5688 5851 6.002653 ACTCCCTGACAAGTTACTTTTTCT 57.997 37.500 0.00 0.00 0.00 2.52
5689 5852 7.133133 ACTCCCTGACAAGTTACTTTTTCTA 57.867 36.000 0.00 0.00 0.00 2.10
5690 5853 6.990939 ACTCCCTGACAAGTTACTTTTTCTAC 59.009 38.462 0.00 0.00 0.00 2.59
5691 5854 7.133133 TCCCTGACAAGTTACTTTTTCTACT 57.867 36.000 0.00 0.00 0.00 2.57
5692 5855 8.253867 TCCCTGACAAGTTACTTTTTCTACTA 57.746 34.615 0.00 0.00 0.00 1.82
5693 5856 8.707449 TCCCTGACAAGTTACTTTTTCTACTAA 58.293 33.333 0.00 0.00 0.00 2.24
5694 5857 8.989980 CCCTGACAAGTTACTTTTTCTACTAAG 58.010 37.037 0.00 0.00 0.00 2.18
5695 5858 8.989980 CCTGACAAGTTACTTTTTCTACTAAGG 58.010 37.037 0.00 0.00 0.00 2.69
5696 5859 8.897872 TGACAAGTTACTTTTTCTACTAAGGG 57.102 34.615 0.00 0.00 0.00 3.95
5697 5860 7.443272 TGACAAGTTACTTTTTCTACTAAGGGC 59.557 37.037 0.00 0.00 0.00 5.19
5698 5861 7.284820 ACAAGTTACTTTTTCTACTAAGGGCA 58.715 34.615 0.00 0.00 0.00 5.36
5700 5863 8.451748 CAAGTTACTTTTTCTACTAAGGGCATC 58.548 37.037 0.00 0.00 0.00 3.91
5701 5864 7.919151 AGTTACTTTTTCTACTAAGGGCATCT 58.081 34.615 0.00 0.00 0.00 2.90
5702 5865 7.824779 AGTTACTTTTTCTACTAAGGGCATCTG 59.175 37.037 0.00 0.00 0.00 2.90
5703 5866 6.128138 ACTTTTTCTACTAAGGGCATCTGT 57.872 37.500 0.00 0.00 0.00 3.41
5704 5867 5.940470 ACTTTTTCTACTAAGGGCATCTGTG 59.060 40.000 0.00 0.00 0.00 3.66
5705 5868 5.755409 TTTTCTACTAAGGGCATCTGTGA 57.245 39.130 0.00 0.00 0.00 3.58
5723 5890 2.297033 GTGACCCGTAAACTAGACACCA 59.703 50.000 0.00 0.00 0.00 4.17
5728 5895 3.176708 CCGTAAACTAGACACCACATCG 58.823 50.000 0.00 0.00 0.00 3.84
5729 5896 3.366679 CCGTAAACTAGACACCACATCGT 60.367 47.826 0.00 0.00 0.00 3.73
5731 5898 4.322804 CGTAAACTAGACACCACATCGTTC 59.677 45.833 0.00 0.00 0.00 3.95
5732 5899 4.330944 AAACTAGACACCACATCGTTCA 57.669 40.909 0.00 0.00 0.00 3.18
5733 5900 3.299340 ACTAGACACCACATCGTTCAC 57.701 47.619 0.00 0.00 0.00 3.18
5734 5901 2.251040 CTAGACACCACATCGTTCACG 58.749 52.381 0.00 0.00 41.45 4.35
5736 5903 0.319211 GACACCACATCGTTCACGGA 60.319 55.000 0.00 0.00 40.29 4.69
5737 5904 0.599204 ACACCACATCGTTCACGGAC 60.599 55.000 0.00 0.00 40.29 4.79
5739 5906 2.092291 CCACATCGTTCACGGACCG 61.092 63.158 13.61 13.61 40.29 4.79
5740 5907 1.081041 CACATCGTTCACGGACCGA 60.081 57.895 23.38 0.00 40.29 4.69
5741 5908 1.071019 CACATCGTTCACGGACCGAG 61.071 60.000 23.38 13.88 40.29 4.63
5742 5909 1.516386 CATCGTTCACGGACCGAGG 60.516 63.158 23.38 12.46 40.29 4.63
5743 5910 1.975407 ATCGTTCACGGACCGAGGT 60.975 57.895 23.38 0.00 40.29 3.85
5746 5913 2.203523 TTCACGGACCGAGGTGGA 60.204 61.111 23.38 0.00 42.00 4.02
5747 5914 2.567497 TTCACGGACCGAGGTGGAC 61.567 63.158 23.38 0.00 42.00 4.02
5768 5935 1.480545 CAGTCCATGGACACGGATACA 59.519 52.381 39.38 2.81 46.76 2.29
5769 5936 2.093711 CAGTCCATGGACACGGATACAA 60.094 50.000 39.38 2.24 46.76 2.41
5770 5937 2.569853 AGTCCATGGACACGGATACAAA 59.430 45.455 39.38 2.02 46.76 2.83
5773 5940 3.754323 TCCATGGACACGGATACAAAAAC 59.246 43.478 11.44 0.00 0.00 2.43
5774 5941 3.119637 CCATGGACACGGATACAAAAACC 60.120 47.826 5.56 0.00 0.00 3.27
5780 5947 1.099689 CGGATACAAAAACCGGCCAT 58.900 50.000 0.00 0.00 42.48 4.40
5784 5951 1.996798 TACAAAAACCGGCCATCCAA 58.003 45.000 0.00 0.00 0.00 3.53
5797 5964 1.617322 CATCCAAGCCAGCTGCATAT 58.383 50.000 8.66 0.00 44.83 1.78
5842 6009 9.609950 CAAATTTGGTGCATATTTAAACAAAGG 57.390 29.630 10.49 0.00 31.03 3.11
5843 6010 7.920160 ATTTGGTGCATATTTAAACAAAGGG 57.080 32.000 0.00 0.00 31.03 3.95
5844 6011 6.426646 TTGGTGCATATTTAAACAAAGGGT 57.573 33.333 0.00 0.00 0.00 4.34
5845 6012 6.031751 TGGTGCATATTTAAACAAAGGGTC 57.968 37.500 0.00 0.00 0.00 4.46
5846 6013 5.777732 TGGTGCATATTTAAACAAAGGGTCT 59.222 36.000 0.00 0.00 0.00 3.85
5847 6014 6.268847 TGGTGCATATTTAAACAAAGGGTCTT 59.731 34.615 0.00 0.00 0.00 3.01
5848 6015 7.158697 GGTGCATATTTAAACAAAGGGTCTTT 58.841 34.615 0.00 0.00 0.00 2.52
5849 6016 7.659799 GGTGCATATTTAAACAAAGGGTCTTTT 59.340 33.333 0.00 0.00 0.00 2.27
5850 6017 9.699703 GTGCATATTTAAACAAAGGGTCTTTTA 57.300 29.630 0.00 0.00 0.00 1.52
5851 6018 9.699703 TGCATATTTAAACAAAGGGTCTTTTAC 57.300 29.630 0.00 0.00 0.00 2.01
5852 6019 9.699703 GCATATTTAAACAAAGGGTCTTTTACA 57.300 29.630 0.00 0.00 0.00 2.41
5857 6024 9.945904 TTTAAACAAAGGGTCTTTTACATTTGT 57.054 25.926 0.00 0.00 44.72 2.83
5858 6025 7.841915 AAACAAAGGGTCTTTTACATTTGTG 57.158 32.000 7.97 0.00 43.32 3.33
5859 6026 6.538945 ACAAAGGGTCTTTTACATTTGTGT 57.461 33.333 6.64 0.00 42.89 3.72
5860 6027 6.941857 ACAAAGGGTCTTTTACATTTGTGTT 58.058 32.000 6.64 0.00 42.89 3.32
5861 6028 7.039270 ACAAAGGGTCTTTTACATTTGTGTTC 58.961 34.615 6.64 0.00 42.89 3.18
5862 6029 5.784578 AGGGTCTTTTACATTTGTGTTCC 57.215 39.130 0.00 0.00 0.00 3.62
5863 6030 5.454966 AGGGTCTTTTACATTTGTGTTCCT 58.545 37.500 0.00 0.00 0.00 3.36
5864 6031 6.607019 AGGGTCTTTTACATTTGTGTTCCTA 58.393 36.000 0.00 0.00 0.00 2.94
5865 6032 7.064229 AGGGTCTTTTACATTTGTGTTCCTAA 58.936 34.615 0.00 0.00 0.00 2.69
5866 6033 7.013942 AGGGTCTTTTACATTTGTGTTCCTAAC 59.986 37.037 0.00 0.00 0.00 2.34
5867 6034 7.013942 GGGTCTTTTACATTTGTGTTCCTAACT 59.986 37.037 0.00 0.00 0.00 2.24
5868 6035 8.074370 GGTCTTTTACATTTGTGTTCCTAACTC 58.926 37.037 0.00 0.00 0.00 3.01
5869 6036 7.797123 GTCTTTTACATTTGTGTTCCTAACTCG 59.203 37.037 0.00 0.00 0.00 4.18
5870 6037 7.711772 TCTTTTACATTTGTGTTCCTAACTCGA 59.288 33.333 0.00 0.00 0.00 4.04
5871 6038 7.789273 TTTACATTTGTGTTCCTAACTCGAA 57.211 32.000 0.00 0.00 34.03 3.71
5872 6039 5.668558 ACATTTGTGTTCCTAACTCGAAC 57.331 39.130 0.00 0.00 40.06 3.95
5873 6040 4.514066 ACATTTGTGTTCCTAACTCGAACC 59.486 41.667 0.00 0.00 39.10 3.62
5874 6041 2.825861 TGTGTTCCTAACTCGAACCC 57.174 50.000 0.00 0.00 39.10 4.11
5875 6042 2.040939 TGTGTTCCTAACTCGAACCCA 58.959 47.619 0.00 0.00 39.10 4.51
5876 6043 2.224113 TGTGTTCCTAACTCGAACCCAC 60.224 50.000 0.00 0.00 39.10 4.61
5877 6044 2.036862 GTGTTCCTAACTCGAACCCACT 59.963 50.000 0.00 0.00 39.10 4.00
5878 6045 3.256631 GTGTTCCTAACTCGAACCCACTA 59.743 47.826 0.00 0.00 39.10 2.74
5879 6046 4.081807 GTGTTCCTAACTCGAACCCACTAT 60.082 45.833 0.00 0.00 39.10 2.12
5880 6047 4.529377 TGTTCCTAACTCGAACCCACTATT 59.471 41.667 0.00 0.00 39.10 1.73
5881 6048 4.996788 TCCTAACTCGAACCCACTATTC 57.003 45.455 0.00 0.00 0.00 1.75
5882 6049 4.346730 TCCTAACTCGAACCCACTATTCA 58.653 43.478 0.00 0.00 0.00 2.57
5883 6050 4.960469 TCCTAACTCGAACCCACTATTCAT 59.040 41.667 0.00 0.00 0.00 2.57
5884 6051 6.131264 TCCTAACTCGAACCCACTATTCATA 58.869 40.000 0.00 0.00 0.00 2.15
5885 6052 6.781014 TCCTAACTCGAACCCACTATTCATAT 59.219 38.462 0.00 0.00 0.00 1.78
5886 6053 7.289317 TCCTAACTCGAACCCACTATTCATATT 59.711 37.037 0.00 0.00 0.00 1.28
5887 6054 7.931948 CCTAACTCGAACCCACTATTCATATTT 59.068 37.037 0.00 0.00 0.00 1.40
5888 6055 7.553881 AACTCGAACCCACTATTCATATTTG 57.446 36.000 0.00 0.00 0.00 2.32
5889 6056 5.527582 ACTCGAACCCACTATTCATATTTGC 59.472 40.000 0.00 0.00 0.00 3.68
5890 6057 4.819630 TCGAACCCACTATTCATATTTGCC 59.180 41.667 0.00 0.00 0.00 4.52
5891 6058 4.023193 CGAACCCACTATTCATATTTGCCC 60.023 45.833 0.00 0.00 0.00 5.36
5892 6059 4.814224 ACCCACTATTCATATTTGCCCT 57.186 40.909 0.00 0.00 0.00 5.19
5893 6060 5.142806 ACCCACTATTCATATTTGCCCTT 57.857 39.130 0.00 0.00 0.00 3.95
5894 6061 6.274322 ACCCACTATTCATATTTGCCCTTA 57.726 37.500 0.00 0.00 0.00 2.69
5895 6062 6.678547 ACCCACTATTCATATTTGCCCTTAA 58.321 36.000 0.00 0.00 0.00 1.85
5896 6063 7.305246 ACCCACTATTCATATTTGCCCTTAAT 58.695 34.615 0.00 0.00 0.00 1.40
5897 6064 7.789349 ACCCACTATTCATATTTGCCCTTAATT 59.211 33.333 0.00 0.00 0.00 1.40
5898 6065 8.650490 CCCACTATTCATATTTGCCCTTAATTT 58.350 33.333 0.00 0.00 0.00 1.82
5904 6071 6.581712 TCATATTTGCCCTTAATTTTGGAGC 58.418 36.000 0.00 0.00 0.00 4.70
5905 6072 4.906747 ATTTGCCCTTAATTTTGGAGCA 57.093 36.364 0.00 7.78 0.00 4.26
5906 6073 4.906747 TTTGCCCTTAATTTTGGAGCAT 57.093 36.364 10.73 0.00 32.54 3.79
5907 6074 3.891422 TGCCCTTAATTTTGGAGCATG 57.109 42.857 0.00 0.00 0.00 4.06
5908 6075 2.093553 TGCCCTTAATTTTGGAGCATGC 60.094 45.455 10.51 10.51 0.00 4.06
5909 6076 2.169144 GCCCTTAATTTTGGAGCATGCT 59.831 45.455 22.92 22.92 0.00 3.79
5910 6077 3.369787 GCCCTTAATTTTGGAGCATGCTT 60.370 43.478 23.61 6.33 0.00 3.91
5911 6078 4.141959 GCCCTTAATTTTGGAGCATGCTTA 60.142 41.667 23.61 11.68 0.00 3.09
5912 6079 5.626578 GCCCTTAATTTTGGAGCATGCTTAA 60.627 40.000 23.61 17.14 0.00 1.85
5913 6080 6.405538 CCCTTAATTTTGGAGCATGCTTAAA 58.594 36.000 23.61 21.69 0.00 1.52
5914 6081 7.049754 CCCTTAATTTTGGAGCATGCTTAAAT 58.950 34.615 23.61 22.01 0.00 1.40
5915 6082 7.553760 CCCTTAATTTTGGAGCATGCTTAAATT 59.446 33.333 30.36 30.36 32.34 1.82
5916 6083 8.949177 CCTTAATTTTGGAGCATGCTTAAATTT 58.051 29.630 31.49 28.19 31.25 1.82
5917 6084 9.763465 CTTAATTTTGGAGCATGCTTAAATTTG 57.237 29.630 31.49 24.99 31.25 2.32
5918 6085 5.610235 TTTTGGAGCATGCTTAAATTTGC 57.390 34.783 23.61 5.90 35.34 3.68
5919 6086 3.249986 TGGAGCATGCTTAAATTTGCC 57.750 42.857 23.61 15.84 35.71 4.52
5920 6087 2.093553 TGGAGCATGCTTAAATTTGCCC 60.094 45.455 23.61 15.09 35.71 5.36
5921 6088 2.554142 GAGCATGCTTAAATTTGCCCC 58.446 47.619 23.61 0.00 35.71 5.80
5922 6089 2.169144 GAGCATGCTTAAATTTGCCCCT 59.831 45.455 23.61 0.00 35.71 4.79
5923 6090 2.169144 AGCATGCTTAAATTTGCCCCTC 59.831 45.455 16.30 0.00 35.71 4.30
5924 6091 2.169144 GCATGCTTAAATTTGCCCCTCT 59.831 45.455 11.37 0.00 0.00 3.69
5925 6092 3.788937 CATGCTTAAATTTGCCCCTCTG 58.211 45.455 0.00 0.00 0.00 3.35
5926 6093 1.550072 TGCTTAAATTTGCCCCTCTGC 59.450 47.619 0.00 0.00 0.00 4.26
5927 6094 1.134699 GCTTAAATTTGCCCCTCTGCC 60.135 52.381 0.00 0.00 0.00 4.85
5928 6095 1.134946 CTTAAATTTGCCCCTCTGCCG 59.865 52.381 0.00 0.00 0.00 5.69
5929 6096 0.039035 TAAATTTGCCCCTCTGCCGT 59.961 50.000 0.00 0.00 0.00 5.68
5930 6097 1.250840 AAATTTGCCCCTCTGCCGTC 61.251 55.000 0.00 0.00 0.00 4.79
5931 6098 2.424842 AATTTGCCCCTCTGCCGTCA 62.425 55.000 0.00 0.00 0.00 4.35
5932 6099 2.424842 ATTTGCCCCTCTGCCGTCAA 62.425 55.000 0.00 0.00 0.00 3.18
5933 6100 3.551496 TTGCCCCTCTGCCGTCAAG 62.551 63.158 0.00 0.00 0.00 3.02
5934 6101 4.021925 GCCCCTCTGCCGTCAAGT 62.022 66.667 0.00 0.00 0.00 3.16
5935 6102 2.266055 CCCCTCTGCCGTCAAGTC 59.734 66.667 0.00 0.00 0.00 3.01
5936 6103 2.583441 CCCCTCTGCCGTCAAGTCA 61.583 63.158 0.00 0.00 0.00 3.41
5937 6104 1.374758 CCCTCTGCCGTCAAGTCAC 60.375 63.158 0.00 0.00 0.00 3.67
5938 6105 1.374758 CCTCTGCCGTCAAGTCACC 60.375 63.158 0.00 0.00 0.00 4.02
5939 6106 1.668294 CTCTGCCGTCAAGTCACCT 59.332 57.895 0.00 0.00 0.00 4.00
5940 6107 0.034059 CTCTGCCGTCAAGTCACCTT 59.966 55.000 0.00 0.00 0.00 3.50
5941 6108 1.272490 CTCTGCCGTCAAGTCACCTTA 59.728 52.381 0.00 0.00 0.00 2.69
5942 6109 1.899814 TCTGCCGTCAAGTCACCTTAT 59.100 47.619 0.00 0.00 0.00 1.73
5943 6110 3.093814 TCTGCCGTCAAGTCACCTTATA 58.906 45.455 0.00 0.00 0.00 0.98
5944 6111 3.130516 TCTGCCGTCAAGTCACCTTATAG 59.869 47.826 0.00 0.00 0.00 1.31
5945 6112 3.093814 TGCCGTCAAGTCACCTTATAGA 58.906 45.455 0.00 0.00 0.00 1.98
5946 6113 3.512329 TGCCGTCAAGTCACCTTATAGAA 59.488 43.478 0.00 0.00 0.00 2.10
5947 6114 4.020928 TGCCGTCAAGTCACCTTATAGAAA 60.021 41.667 0.00 0.00 0.00 2.52
5948 6115 5.116882 GCCGTCAAGTCACCTTATAGAAAT 58.883 41.667 0.00 0.00 0.00 2.17
5949 6116 5.006746 GCCGTCAAGTCACCTTATAGAAATG 59.993 44.000 0.00 0.00 0.00 2.32
5950 6117 5.006746 CCGTCAAGTCACCTTATAGAAATGC 59.993 44.000 0.00 0.00 0.00 3.56
5951 6118 5.006746 CGTCAAGTCACCTTATAGAAATGCC 59.993 44.000 0.00 0.00 0.00 4.40
5952 6119 5.297029 GTCAAGTCACCTTATAGAAATGCCC 59.703 44.000 0.00 0.00 0.00 5.36
5953 6120 5.191722 TCAAGTCACCTTATAGAAATGCCCT 59.808 40.000 0.00 0.00 0.00 5.19
5954 6121 5.717119 AGTCACCTTATAGAAATGCCCTT 57.283 39.130 0.00 0.00 0.00 3.95
5955 6122 5.685728 AGTCACCTTATAGAAATGCCCTTC 58.314 41.667 0.00 0.00 0.00 3.46
5956 6123 4.822350 GTCACCTTATAGAAATGCCCTTCC 59.178 45.833 0.00 0.00 0.00 3.46
5957 6124 4.476846 TCACCTTATAGAAATGCCCTTCCA 59.523 41.667 0.00 0.00 0.00 3.53
5958 6125 5.134339 TCACCTTATAGAAATGCCCTTCCAT 59.866 40.000 0.00 0.00 0.00 3.41
5959 6126 6.331572 TCACCTTATAGAAATGCCCTTCCATA 59.668 38.462 0.00 0.00 0.00 2.74
5960 6127 6.431234 CACCTTATAGAAATGCCCTTCCATAC 59.569 42.308 0.00 0.00 0.00 2.39
5961 6128 5.946377 CCTTATAGAAATGCCCTTCCATACC 59.054 44.000 0.00 0.00 0.00 2.73
5962 6129 2.348411 AGAAATGCCCTTCCATACCG 57.652 50.000 0.00 0.00 0.00 4.02
5963 6130 1.564348 AGAAATGCCCTTCCATACCGT 59.436 47.619 0.00 0.00 0.00 4.83
5964 6131 2.025321 AGAAATGCCCTTCCATACCGTT 60.025 45.455 0.00 0.00 0.00 4.44
5965 6132 3.201266 AGAAATGCCCTTCCATACCGTTA 59.799 43.478 0.00 0.00 0.00 3.18
5966 6133 2.632987 ATGCCCTTCCATACCGTTAC 57.367 50.000 0.00 0.00 0.00 2.50
5967 6134 0.542805 TGCCCTTCCATACCGTTACC 59.457 55.000 0.00 0.00 0.00 2.85
5968 6135 0.531311 GCCCTTCCATACCGTTACCG 60.531 60.000 0.00 0.00 0.00 4.02
5969 6136 0.826062 CCCTTCCATACCGTTACCGT 59.174 55.000 0.00 0.00 0.00 4.83
5970 6137 1.202452 CCCTTCCATACCGTTACCGTC 60.202 57.143 0.00 0.00 0.00 4.79
5971 6138 1.202452 CCTTCCATACCGTTACCGTCC 60.202 57.143 0.00 0.00 0.00 4.79
5972 6139 0.455410 TTCCATACCGTTACCGTCCG 59.545 55.000 0.00 0.00 0.00 4.79
5983 6150 4.016706 CCGTCCGGTCAAAGGGCT 62.017 66.667 0.00 0.00 0.00 5.19
5984 6151 2.032071 CGTCCGGTCAAAGGGCTT 59.968 61.111 0.00 0.00 0.00 4.35
5985 6152 1.599797 CGTCCGGTCAAAGGGCTTT 60.600 57.895 0.00 0.00 0.00 3.51
5994 6161 2.571548 AAAGGGCTTTGATCGCCTG 58.428 52.632 9.60 0.00 46.73 4.85
5995 6162 0.038166 AAAGGGCTTTGATCGCCTGA 59.962 50.000 9.60 0.00 46.73 3.86
5996 6163 0.038166 AAGGGCTTTGATCGCCTGAA 59.962 50.000 9.60 0.00 46.73 3.02
5997 6164 0.038166 AGGGCTTTGATCGCCTGAAA 59.962 50.000 9.60 0.00 46.73 2.69
5998 6165 0.887933 GGGCTTTGATCGCCTGAAAA 59.112 50.000 9.60 0.00 46.73 2.29
5999 6166 1.272212 GGGCTTTGATCGCCTGAAAAA 59.728 47.619 9.60 0.00 46.73 1.94
6044 6211 6.995511 AAATCTGAAATTTTACGGGATCGA 57.004 33.333 0.00 0.00 40.11 3.59
6045 6212 6.995511 AATCTGAAATTTTACGGGATCGAA 57.004 33.333 0.00 0.00 40.11 3.71
6046 6213 6.604735 ATCTGAAATTTTACGGGATCGAAG 57.395 37.500 0.00 0.00 40.11 3.79
6047 6214 5.726397 TCTGAAATTTTACGGGATCGAAGA 58.274 37.500 0.00 0.00 45.75 2.87
6048 6215 6.346096 TCTGAAATTTTACGGGATCGAAGAT 58.654 36.000 0.00 0.00 45.12 2.40
6049 6216 7.494211 TCTGAAATTTTACGGGATCGAAGATA 58.506 34.615 0.00 0.00 45.12 1.98
6050 6217 7.437267 TCTGAAATTTTACGGGATCGAAGATAC 59.563 37.037 0.00 0.00 45.12 2.24
6051 6218 7.270047 TGAAATTTTACGGGATCGAAGATACT 58.730 34.615 0.00 0.00 45.12 2.12
6052 6219 7.767198 TGAAATTTTACGGGATCGAAGATACTT 59.233 33.333 0.00 0.00 45.12 2.24
6053 6220 7.478520 AATTTTACGGGATCGAAGATACTTG 57.521 36.000 0.00 0.00 45.12 3.16
6054 6221 5.840243 TTTACGGGATCGAAGATACTTGA 57.160 39.130 0.00 0.00 45.12 3.02
6055 6222 3.992260 ACGGGATCGAAGATACTTGAG 57.008 47.619 0.00 0.00 45.12 3.02
6056 6223 3.288964 ACGGGATCGAAGATACTTGAGT 58.711 45.455 0.00 0.00 45.12 3.41
6057 6224 3.066900 ACGGGATCGAAGATACTTGAGTG 59.933 47.826 0.00 0.00 45.12 3.51
6058 6225 3.385577 GGGATCGAAGATACTTGAGTGC 58.614 50.000 0.00 0.00 45.12 4.40
6059 6226 3.046390 GGATCGAAGATACTTGAGTGCG 58.954 50.000 0.00 0.00 45.12 5.34
6060 6227 1.909376 TCGAAGATACTTGAGTGCGC 58.091 50.000 0.00 0.00 0.00 6.09
6061 6228 1.201414 TCGAAGATACTTGAGTGCGCA 59.799 47.619 5.66 5.66 0.00 6.09
6062 6229 1.992667 CGAAGATACTTGAGTGCGCAA 59.007 47.619 14.00 0.00 0.00 4.85
6063 6230 5.493353 ATCGAAGATACTTGAGTGCGCAAG 61.493 45.833 14.00 8.81 45.87 4.01
6067 6234 2.253452 CTTGAGTGCGCAAGGTGC 59.747 61.111 14.00 0.00 41.15 5.01
6076 6243 4.341827 GCAAGGTGCGTGCAATTT 57.658 50.000 0.00 0.00 41.80 1.82
6077 6244 2.603915 GCAAGGTGCGTGCAATTTT 58.396 47.368 0.00 0.00 41.80 1.82
6078 6245 0.936600 GCAAGGTGCGTGCAATTTTT 59.063 45.000 0.00 0.00 41.80 1.94
6097 6264 3.810310 TTTGTGGTGTTTGGACATTCC 57.190 42.857 0.00 0.00 38.23 3.01
6098 6265 1.313772 TGTGGTGTTTGGACATTCCG 58.686 50.000 0.00 0.00 40.17 4.30
6099 6266 0.596082 GTGGTGTTTGGACATTCCGG 59.404 55.000 0.00 0.00 40.17 5.14
6100 6267 0.538516 TGGTGTTTGGACATTCCGGG 60.539 55.000 0.00 0.00 40.17 5.73
6101 6268 0.250989 GGTGTTTGGACATTCCGGGA 60.251 55.000 0.00 0.00 40.17 5.14
6102 6269 1.165270 GTGTTTGGACATTCCGGGAG 58.835 55.000 0.00 0.00 40.17 4.30
6103 6270 1.060729 TGTTTGGACATTCCGGGAGA 58.939 50.000 0.00 0.00 40.17 3.71
6104 6271 1.271163 TGTTTGGACATTCCGGGAGAC 60.271 52.381 0.00 0.00 40.17 3.36
6115 6282 2.266055 GGGAGACCGTGAGCAAGG 59.734 66.667 0.77 0.77 43.64 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 25 1.711060 AAACACCACCAACACGCTCG 61.711 55.000 0.00 0.00 0.00 5.03
33 35 3.982576 AATCAAACGAGAAACACCACC 57.017 42.857 0.00 0.00 0.00 4.61
95 97 4.926140 AAGAAAAGGGCAAGACTTTCAG 57.074 40.909 0.00 0.00 37.18 3.02
107 109 6.741992 AAAAACAGAGCAAAAAGAAAAGGG 57.258 33.333 0.00 0.00 0.00 3.95
133 136 3.832276 CACCAAAACGAGAGAGAGAGAG 58.168 50.000 0.00 0.00 0.00 3.20
134 137 2.029828 GCACCAAAACGAGAGAGAGAGA 60.030 50.000 0.00 0.00 0.00 3.10
135 138 2.333014 GCACCAAAACGAGAGAGAGAG 58.667 52.381 0.00 0.00 0.00 3.20
148 151 6.493189 AAAAATAGAGGAAAAGGCACCAAA 57.507 33.333 0.00 0.00 0.00 3.28
190 193 5.527582 GGAGCACGGACAAAATTATACTGAT 59.472 40.000 0.00 0.00 0.00 2.90
232 235 7.984050 TGGAACAACATTTGCTTAAAGATTTCA 59.016 29.630 0.00 0.00 31.92 2.69
264 267 1.794222 GCGTGAACCGATTCCAAGG 59.206 57.895 0.00 0.00 39.56 3.61
271 274 2.048597 TTGCTCGCGTGAACCGAT 60.049 55.556 13.13 0.00 39.56 4.18
273 276 4.430423 GCTTGCTCGCGTGAACCG 62.430 66.667 13.13 0.00 40.40 4.44
275 278 1.282248 TACTGCTTGCTCGCGTGAAC 61.282 55.000 13.13 0.00 0.00 3.18
276 279 1.006688 TACTGCTTGCTCGCGTGAA 60.007 52.632 13.13 0.00 0.00 3.18
277 280 1.733041 GTACTGCTTGCTCGCGTGA 60.733 57.895 13.13 0.00 0.00 4.35
279 282 0.878523 TTTGTACTGCTTGCTCGCGT 60.879 50.000 5.77 0.00 0.00 6.01
280 283 0.234625 TTTTGTACTGCTTGCTCGCG 59.765 50.000 0.00 0.00 0.00 5.87
281 284 2.619013 ATTTTGTACTGCTTGCTCGC 57.381 45.000 0.00 0.00 0.00 5.03
282 285 5.029650 TGTAATTTTGTACTGCTTGCTCG 57.970 39.130 0.00 0.00 0.00 5.03
283 286 6.002062 ACTGTAATTTTGTACTGCTTGCTC 57.998 37.500 0.00 0.00 0.00 4.26
284 287 5.765182 AGACTGTAATTTTGTACTGCTTGCT 59.235 36.000 0.00 0.00 0.00 3.91
285 288 6.002062 AGACTGTAATTTTGTACTGCTTGC 57.998 37.500 0.00 0.00 0.00 4.01
286 289 6.299604 CGAGACTGTAATTTTGTACTGCTTG 58.700 40.000 0.00 0.00 0.00 4.01
287 290 5.107065 GCGAGACTGTAATTTTGTACTGCTT 60.107 40.000 0.00 0.00 0.00 3.91
288 291 4.389077 GCGAGACTGTAATTTTGTACTGCT 59.611 41.667 0.00 0.00 0.00 4.24
289 292 4.389077 AGCGAGACTGTAATTTTGTACTGC 59.611 41.667 0.00 0.00 0.00 4.40
290 293 6.467723 AAGCGAGACTGTAATTTTGTACTG 57.532 37.500 0.00 0.00 0.00 2.74
291 294 7.307811 GGAAAAGCGAGACTGTAATTTTGTACT 60.308 37.037 0.00 0.00 0.00 2.73
292 295 6.795593 GGAAAAGCGAGACTGTAATTTTGTAC 59.204 38.462 0.00 0.00 0.00 2.90
293 296 6.347079 CGGAAAAGCGAGACTGTAATTTTGTA 60.347 38.462 0.00 0.00 0.00 2.41
294 297 5.560183 CGGAAAAGCGAGACTGTAATTTTGT 60.560 40.000 0.00 0.00 0.00 2.83
295 298 4.846137 CGGAAAAGCGAGACTGTAATTTTG 59.154 41.667 0.00 0.00 0.00 2.44
296 299 4.514066 ACGGAAAAGCGAGACTGTAATTTT 59.486 37.500 0.00 0.00 0.00 1.82
335 338 7.248743 ACTAGGTTGTATTGCTAACCAGTAA 57.751 36.000 8.64 0.00 46.87 2.24
336 339 6.862469 ACTAGGTTGTATTGCTAACCAGTA 57.138 37.500 8.64 0.00 46.87 2.74
337 340 5.757099 ACTAGGTTGTATTGCTAACCAGT 57.243 39.130 8.64 7.03 46.87 4.00
338 341 6.875076 AGTACTAGGTTGTATTGCTAACCAG 58.125 40.000 8.64 6.51 46.87 4.00
392 401 1.134694 GAAATCGAAGCGCGCCTTT 59.865 52.632 30.33 17.55 40.61 3.11
404 413 7.170998 ACCTGTAGTGTAAGAAAACTGAAATCG 59.829 37.037 0.00 0.00 0.00 3.34
434 450 1.599542 GGCACATTCTCGGCTTCATAC 59.400 52.381 0.00 0.00 0.00 2.39
452 468 5.408356 TCAGTTTCTCATACTAAGAACGGC 58.592 41.667 0.00 0.00 32.64 5.68
453 469 6.528423 CACTCAGTTTCTCATACTAAGAACGG 59.472 42.308 0.00 0.00 32.64 4.44
454 470 7.061210 CACACTCAGTTTCTCATACTAAGAACG 59.939 40.741 0.00 0.00 32.64 3.95
455 471 8.082852 TCACACTCAGTTTCTCATACTAAGAAC 58.917 37.037 0.00 0.00 32.64 3.01
458 474 8.994429 ATTCACACTCAGTTTCTCATACTAAG 57.006 34.615 0.00 0.00 0.00 2.18
490 506 7.410174 AGTTGGTCCAATTGATTTATACTGGA 58.590 34.615 7.77 0.00 0.00 3.86
495 511 9.194972 TGCAATAGTTGGTCCAATTGATTTATA 57.805 29.630 17.10 0.00 32.29 0.98
497 513 7.473735 TGCAATAGTTGGTCCAATTGATTTA 57.526 32.000 17.10 0.00 32.29 1.40
502 518 6.482973 AGTTTTTGCAATAGTTGGTCCAATTG 59.517 34.615 7.77 9.61 33.45 2.32
511 527 6.747659 AGCGTTAAGTTTTTGCAATAGTTG 57.252 33.333 0.00 0.00 0.00 3.16
550 566 6.953101 TGACCTTCCAACAGCAATATAGTTA 58.047 36.000 0.00 0.00 0.00 2.24
599 679 9.473640 TGGCGTCGTATACATAATAATTAAACA 57.526 29.630 3.32 0.00 0.00 2.83
600 680 9.731519 GTGGCGTCGTATACATAATAATTAAAC 57.268 33.333 3.32 0.00 0.00 2.01
601 681 9.473640 TGTGGCGTCGTATACATAATAATTAAA 57.526 29.630 3.32 0.00 0.00 1.52
602 682 9.473640 TTGTGGCGTCGTATACATAATAATTAA 57.526 29.630 3.32 0.00 0.00 1.40
603 683 9.642327 ATTGTGGCGTCGTATACATAATAATTA 57.358 29.630 3.32 0.00 0.00 1.40
604 684 7.949903 TTGTGGCGTCGTATACATAATAATT 57.050 32.000 3.32 0.00 0.00 1.40
605 685 8.542497 AATTGTGGCGTCGTATACATAATAAT 57.458 30.769 3.32 0.00 0.00 1.28
606 686 7.949903 AATTGTGGCGTCGTATACATAATAA 57.050 32.000 3.32 0.00 0.00 1.40
607 687 9.473640 TTTAATTGTGGCGTCGTATACATAATA 57.526 29.630 3.32 0.00 0.00 0.98
608 688 7.949903 TTAATTGTGGCGTCGTATACATAAT 57.050 32.000 3.32 0.00 0.00 1.28
609 689 7.492020 AGTTTAATTGTGGCGTCGTATACATAA 59.508 33.333 3.32 0.00 0.00 1.90
610 690 6.979817 AGTTTAATTGTGGCGTCGTATACATA 59.020 34.615 3.32 0.00 0.00 2.29
611 691 5.813672 AGTTTAATTGTGGCGTCGTATACAT 59.186 36.000 3.32 0.00 0.00 2.29
612 692 5.062433 CAGTTTAATTGTGGCGTCGTATACA 59.938 40.000 3.32 0.00 0.00 2.29
616 696 3.429543 GTCAGTTTAATTGTGGCGTCGTA 59.570 43.478 0.00 0.00 0.00 3.43
621 701 2.664424 CGGTGTCAGTTTAATTGTGGCG 60.664 50.000 0.00 0.00 0.00 5.69
651 731 6.547141 TCTGTTGAAACAACTGAATCAAGGAT 59.453 34.615 17.15 0.00 38.66 3.24
661 741 5.007234 TGGTTACGATCTGTTGAAACAACTG 59.993 40.000 14.19 13.46 38.66 3.16
664 744 5.361427 TCTGGTTACGATCTGTTGAAACAA 58.639 37.500 0.00 0.00 38.66 2.83
670 750 4.033358 GCTGATTCTGGTTACGATCTGTTG 59.967 45.833 0.00 0.00 0.00 3.33
678 758 2.066262 ACAACGCTGATTCTGGTTACG 58.934 47.619 0.00 0.00 0.00 3.18
694 774 5.406175 TGTTGTTAATACGCAGGAGTACAAC 59.594 40.000 0.00 0.00 33.86 3.32
990 1075 4.418392 CATACAAGTTCATCAAGCCTTGC 58.582 43.478 0.00 0.00 38.24 4.01
1030 1115 1.279558 GGAAGAGTTCTCCCCTCCAAC 59.720 57.143 7.76 0.00 0.00 3.77
2221 2306 1.332195 AGTTTTCCTCCAAAGCCAGC 58.668 50.000 0.00 0.00 0.00 4.85
2286 2374 5.163632 CCAACAAAGGCAAAATTTCAGCTTT 60.164 36.000 13.28 10.16 0.00 3.51
2334 2422 7.620880 AGCACCATTTCAAATCTGTAGTACTA 58.379 34.615 0.00 0.00 0.00 1.82
2396 2484 0.537143 TGCTCAACAAACCATCGGCT 60.537 50.000 0.00 0.00 0.00 5.52
2422 2510 5.106118 GGAAAATCAGGCAGAACTCCTAAAC 60.106 44.000 0.00 0.00 31.52 2.01
2446 2534 6.974622 GCATGTTATTTTCTGAACCATGGTAG 59.025 38.462 20.12 13.39 0.00 3.18
2613 2707 4.445452 AGCCTACGAACGATACAGAAAA 57.555 40.909 0.14 0.00 0.00 2.29
2683 2777 3.303659 GCTCTAGCATTTTCAATCTCCGC 60.304 47.826 0.00 0.00 41.59 5.54
2827 2921 2.489329 CAAGTTCCAGGTAAGCATGGTG 59.511 50.000 0.00 0.00 45.94 4.17
2848 2942 2.246719 AGGAATACAGATTCAGGCGC 57.753 50.000 0.00 0.00 42.95 6.53
2849 2943 9.823647 AATATATAAGGAATACAGATTCAGGCG 57.176 33.333 0.51 0.00 42.95 5.52
2969 3067 5.824097 TGTATGATGCAGTACGTAGAAGGTA 59.176 40.000 0.00 0.00 0.00 3.08
3157 3257 9.214953 GAATTAAGTGATCGACATTTCATGTTC 57.785 33.333 0.00 0.00 45.03 3.18
3164 3264 7.905604 TCAGTGAATTAAGTGATCGACATTT 57.094 32.000 0.00 0.00 33.24 2.32
3268 3368 0.752658 GAGGCCAAAAGCACCAACTT 59.247 50.000 5.01 0.00 46.50 2.66
3287 3387 0.035458 AGGAAACTGGGAGCAGTTCG 59.965 55.000 0.00 0.00 43.83 3.95
3511 3611 7.414814 TGCCATATATACACATAACAACACG 57.585 36.000 0.00 0.00 0.00 4.49
3598 3700 5.123186 TCACTTTTTATGTCCATTGCCTACG 59.877 40.000 0.00 0.00 0.00 3.51
4012 4114 7.872483 CACCTAAAAATTTCCAGTAGCAACAAT 59.128 33.333 0.00 0.00 0.00 2.71
4020 4122 5.141182 TGTGGCACCTAAAAATTTCCAGTA 58.859 37.500 16.26 0.00 0.00 2.74
4548 4654 4.551702 TTCAGTGGATAAAGCTGCTACA 57.448 40.909 0.90 0.00 0.00 2.74
4549 4655 6.763610 AGTAATTCAGTGGATAAAGCTGCTAC 59.236 38.462 0.90 0.00 0.00 3.58
4598 4704 1.542492 AAGGAGCAGAACAATGGCAG 58.458 50.000 0.00 0.00 0.00 4.85
4640 4746 1.278127 AGGTTGGTCGATTCCGTTCAT 59.722 47.619 0.00 0.00 37.05 2.57
4747 4853 1.399714 AGGATACCTGCATCGACGAA 58.600 50.000 0.00 0.00 29.57 3.85
4814 4929 3.821033 GCAGAAGGATTAGGTTGTGTTGT 59.179 43.478 0.00 0.00 0.00 3.32
4817 4932 4.202461 TGAAGCAGAAGGATTAGGTTGTGT 60.202 41.667 0.00 0.00 0.00 3.72
4823 4938 3.557228 AGCTGAAGCAGAAGGATTAGG 57.443 47.619 4.90 0.00 45.16 2.69
4877 5007 1.136147 CTGCCAGAACATCGCTTGC 59.864 57.895 0.00 0.00 0.00 4.01
4924 5054 2.125512 CCCTGGGCGTCTCGAAAG 60.126 66.667 0.00 0.00 0.00 2.62
4925 5055 2.602267 TCCCTGGGCGTCTCGAAA 60.602 61.111 8.22 0.00 0.00 3.46
5026 5156 4.259356 CATGAGCGATGATGATACCCATT 58.741 43.478 0.00 0.00 35.17 3.16
5285 5422 4.526262 ACCTAGCAAGATACTAGCAGGATG 59.474 45.833 0.00 0.00 36.58 3.51
5315 5452 5.678483 CAGTGTGTCAGAAAATCAAAAGACG 59.322 40.000 0.00 0.00 0.00 4.18
5330 5472 0.038251 GATCTCGCACCAGTGTGTCA 60.038 55.000 10.87 0.20 44.65 3.58
5331 5473 0.244994 AGATCTCGCACCAGTGTGTC 59.755 55.000 10.87 2.37 44.65 3.67
5332 5474 1.545841 TAGATCTCGCACCAGTGTGT 58.454 50.000 10.87 0.00 44.65 3.72
5333 5475 2.879002 ATAGATCTCGCACCAGTGTG 57.121 50.000 0.00 4.96 45.65 3.82
5334 5476 2.294791 GCTATAGATCTCGCACCAGTGT 59.705 50.000 3.21 0.00 0.00 3.55
5335 5477 2.556189 AGCTATAGATCTCGCACCAGTG 59.444 50.000 3.21 0.00 0.00 3.66
5336 5478 2.556189 CAGCTATAGATCTCGCACCAGT 59.444 50.000 3.21 0.00 0.00 4.00
5421 5565 0.813184 CGAAGCAACTTGGGCATGAT 59.187 50.000 0.00 0.00 0.00 2.45
5440 5584 0.751643 ACAGGCCAAGGTTCACACAC 60.752 55.000 5.01 0.00 0.00 3.82
5465 5609 0.320374 AGGGACGAACGATTTGCTCA 59.680 50.000 0.14 0.00 0.00 4.26
5482 5626 1.150567 GCAGCTGCGTCATAGTCAGG 61.151 60.000 25.23 0.00 0.00 3.86
5501 5645 3.925630 ATGTTGCCTGCCTGACCGG 62.926 63.158 0.00 0.00 0.00 5.28
5502 5646 2.360350 ATGTTGCCTGCCTGACCG 60.360 61.111 0.00 0.00 0.00 4.79
5503 5647 2.048603 GGATGTTGCCTGCCTGACC 61.049 63.158 0.00 0.00 0.00 4.02
5504 5648 0.895100 TTGGATGTTGCCTGCCTGAC 60.895 55.000 0.00 0.00 0.00 3.51
5505 5649 0.178967 TTTGGATGTTGCCTGCCTGA 60.179 50.000 0.00 0.00 0.00 3.86
5506 5650 0.037975 GTTTGGATGTTGCCTGCCTG 60.038 55.000 0.00 0.00 0.00 4.85
5507 5651 1.187567 GGTTTGGATGTTGCCTGCCT 61.188 55.000 0.00 0.00 0.00 4.75
5508 5652 1.293179 GGTTTGGATGTTGCCTGCC 59.707 57.895 0.00 0.00 0.00 4.85
5509 5653 1.187567 AGGGTTTGGATGTTGCCTGC 61.188 55.000 0.00 0.00 0.00 4.85
5558 5713 4.972875 GGAGGTCTTCCATGGCTG 57.027 61.111 6.96 1.80 46.01 4.85
5584 5739 0.385029 CAGAGGATGTCTGCGAGAGG 59.615 60.000 0.00 0.00 46.41 3.69
5593 5748 3.817647 AGTTGTTTTCTGCAGAGGATGTC 59.182 43.478 17.43 8.01 0.00 3.06
5594 5749 3.567164 CAGTTGTTTTCTGCAGAGGATGT 59.433 43.478 17.43 0.00 0.00 3.06
5602 5757 2.997980 TCAGACCAGTTGTTTTCTGCA 58.002 42.857 0.00 0.00 36.26 4.41
5620 5783 5.223449 AGGAAAAGAACACGAAGGTATCA 57.777 39.130 0.00 0.00 0.00 2.15
5628 5791 2.121786 CGTTCGAGGAAAAGAACACGA 58.878 47.619 8.70 0.00 44.94 4.35
5631 5794 3.523547 TCAACGTTCGAGGAAAAGAACA 58.476 40.909 0.00 0.00 44.94 3.18
5642 5805 3.065095 ACCGGAAAATTTTCAACGTTCGA 59.935 39.130 27.53 0.00 38.92 3.71
5656 5819 1.719529 TGTCAGGGAGTACCGGAAAA 58.280 50.000 9.46 0.00 45.29 2.29
5668 5831 8.897872 TTAGTAGAAAAAGTAACTTGTCAGGG 57.102 34.615 0.00 0.00 0.00 4.45
5671 5834 7.443272 GCCCTTAGTAGAAAAAGTAACTTGTCA 59.557 37.037 0.00 0.00 0.00 3.58
5685 5848 3.451178 GGTCACAGATGCCCTTAGTAGAA 59.549 47.826 0.00 0.00 0.00 2.10
5687 5850 2.103263 GGGTCACAGATGCCCTTAGTAG 59.897 54.545 0.00 0.00 38.47 2.57
5688 5851 2.116238 GGGTCACAGATGCCCTTAGTA 58.884 52.381 0.00 0.00 38.47 1.82
5689 5852 0.912486 GGGTCACAGATGCCCTTAGT 59.088 55.000 0.00 0.00 38.47 2.24
5690 5853 0.179073 CGGGTCACAGATGCCCTTAG 60.179 60.000 0.00 0.00 39.03 2.18
5691 5854 0.907704 ACGGGTCACAGATGCCCTTA 60.908 55.000 0.00 0.00 39.03 2.69
5692 5855 0.907704 TACGGGTCACAGATGCCCTT 60.908 55.000 0.00 0.00 39.03 3.95
5693 5856 0.907704 TTACGGGTCACAGATGCCCT 60.908 55.000 0.00 0.00 39.03 5.19
5694 5857 0.035820 TTTACGGGTCACAGATGCCC 60.036 55.000 0.00 0.00 38.27 5.36
5695 5858 1.084289 GTTTACGGGTCACAGATGCC 58.916 55.000 0.00 0.00 0.00 4.40
5696 5859 2.094762 AGTTTACGGGTCACAGATGC 57.905 50.000 0.00 0.00 0.00 3.91
5697 5860 4.082408 TGTCTAGTTTACGGGTCACAGATG 60.082 45.833 0.00 0.00 0.00 2.90
5698 5861 4.082354 GTGTCTAGTTTACGGGTCACAGAT 60.082 45.833 0.00 0.00 0.00 2.90
5700 5863 3.572584 GTGTCTAGTTTACGGGTCACAG 58.427 50.000 0.00 0.00 0.00 3.66
5701 5864 2.297033 GGTGTCTAGTTTACGGGTCACA 59.703 50.000 0.00 0.00 0.00 3.58
5702 5865 2.297033 TGGTGTCTAGTTTACGGGTCAC 59.703 50.000 0.00 0.00 0.00 3.67
5703 5866 2.297033 GTGGTGTCTAGTTTACGGGTCA 59.703 50.000 0.00 0.00 0.00 4.02
5704 5867 2.297033 TGTGGTGTCTAGTTTACGGGTC 59.703 50.000 0.00 0.00 0.00 4.46
5705 5868 2.318908 TGTGGTGTCTAGTTTACGGGT 58.681 47.619 0.00 0.00 0.00 5.28
5708 5871 3.829948 ACGATGTGGTGTCTAGTTTACG 58.170 45.455 0.00 0.00 0.00 3.18
5728 5895 2.048503 CCACCTCGGTCCGTGAAC 60.049 66.667 14.81 0.00 31.36 3.18
5729 5896 2.203523 TCCACCTCGGTCCGTGAA 60.204 61.111 14.81 0.00 35.57 3.18
5731 5898 4.065281 GGTCCACCTCGGTCCGTG 62.065 72.222 11.88 8.95 32.96 4.94
5732 5899 4.608774 TGGTCCACCTCGGTCCGT 62.609 66.667 11.88 0.00 45.38 4.69
5733 5900 3.760035 CTGGTCCACCTCGGTCCG 61.760 72.222 4.39 4.39 45.38 4.79
5734 5901 2.603776 ACTGGTCCACCTCGGTCC 60.604 66.667 0.00 0.00 42.92 4.46
5746 5913 1.535444 TCCGTGTCCATGGACTGGT 60.535 57.895 37.92 0.00 46.08 4.00
5753 5920 3.425625 CGGTTTTTGTATCCGTGTCCATG 60.426 47.826 0.00 0.00 39.51 3.66
5754 5921 2.745281 CGGTTTTTGTATCCGTGTCCAT 59.255 45.455 0.00 0.00 39.51 3.41
5759 5926 0.169451 GGCCGGTTTTTGTATCCGTG 59.831 55.000 1.90 0.00 42.30 4.94
5761 5928 1.064952 GATGGCCGGTTTTTGTATCCG 59.935 52.381 1.90 0.00 43.30 4.18
5766 5933 0.678950 CTTGGATGGCCGGTTTTTGT 59.321 50.000 1.90 0.00 36.79 2.83
5768 5935 1.671166 GCTTGGATGGCCGGTTTTT 59.329 52.632 1.90 0.00 36.79 1.94
5769 5936 2.282783 GGCTTGGATGGCCGGTTTT 61.283 57.895 1.90 0.00 40.19 2.43
5770 5937 2.679996 GGCTTGGATGGCCGGTTT 60.680 61.111 1.90 0.00 40.19 3.27
5780 5947 0.256752 ACATATGCAGCTGGCTTGGA 59.743 50.000 17.12 0.00 45.15 3.53
5784 5951 1.227764 CGGACATATGCAGCTGGCT 60.228 57.895 17.12 1.31 45.15 4.75
5791 5958 4.927782 GGCCGCCGGACATATGCA 62.928 66.667 7.68 0.00 0.00 3.96
5841 6008 5.784578 AGGAACACAAATGTAAAAGACCC 57.215 39.130 0.00 0.00 38.45 4.46
5842 6009 7.937649 AGTTAGGAACACAAATGTAAAAGACC 58.062 34.615 0.00 0.00 38.45 3.85
5843 6010 7.797123 CGAGTTAGGAACACAAATGTAAAAGAC 59.203 37.037 0.00 0.00 38.45 3.01
5844 6011 7.711772 TCGAGTTAGGAACACAAATGTAAAAGA 59.288 33.333 0.00 0.00 38.45 2.52
5845 6012 7.857569 TCGAGTTAGGAACACAAATGTAAAAG 58.142 34.615 0.00 0.00 38.45 2.27
5846 6013 7.789273 TCGAGTTAGGAACACAAATGTAAAA 57.211 32.000 0.00 0.00 38.45 1.52
5847 6014 7.254863 GGTTCGAGTTAGGAACACAAATGTAAA 60.255 37.037 6.95 0.00 44.29 2.01
5848 6015 6.203338 GGTTCGAGTTAGGAACACAAATGTAA 59.797 38.462 6.95 0.00 44.29 2.41
5849 6016 5.697633 GGTTCGAGTTAGGAACACAAATGTA 59.302 40.000 6.95 0.00 44.29 2.29
5850 6017 4.514066 GGTTCGAGTTAGGAACACAAATGT 59.486 41.667 6.95 0.00 44.29 2.71
5851 6018 4.083484 GGGTTCGAGTTAGGAACACAAATG 60.083 45.833 6.95 0.00 45.07 2.32
5852 6019 4.070009 GGGTTCGAGTTAGGAACACAAAT 58.930 43.478 6.95 0.00 45.07 2.32
5853 6020 3.469739 GGGTTCGAGTTAGGAACACAAA 58.530 45.455 6.95 0.00 45.07 2.83
5854 6021 3.116079 GGGTTCGAGTTAGGAACACAA 57.884 47.619 6.95 0.00 45.07 3.33
5855 6022 2.825861 GGGTTCGAGTTAGGAACACA 57.174 50.000 6.95 0.00 45.07 3.72
5856 6023 2.036862 AGTGGGTTCGAGTTAGGAACAC 59.963 50.000 6.95 3.75 45.74 3.32
5857 6024 2.322658 AGTGGGTTCGAGTTAGGAACA 58.677 47.619 6.95 0.00 44.29 3.18
5858 6025 4.732672 ATAGTGGGTTCGAGTTAGGAAC 57.267 45.455 0.00 0.00 42.32 3.62
5859 6026 4.773674 TGAATAGTGGGTTCGAGTTAGGAA 59.226 41.667 0.00 0.00 0.00 3.36
5860 6027 4.346730 TGAATAGTGGGTTCGAGTTAGGA 58.653 43.478 0.00 0.00 0.00 2.94
5861 6028 4.730949 TGAATAGTGGGTTCGAGTTAGG 57.269 45.455 0.00 0.00 0.00 2.69
5862 6029 8.765219 CAAATATGAATAGTGGGTTCGAGTTAG 58.235 37.037 0.00 0.00 0.00 2.34
5863 6030 7.225931 GCAAATATGAATAGTGGGTTCGAGTTA 59.774 37.037 0.00 0.00 0.00 2.24
5864 6031 6.038271 GCAAATATGAATAGTGGGTTCGAGTT 59.962 38.462 0.00 0.00 0.00 3.01
5865 6032 5.527582 GCAAATATGAATAGTGGGTTCGAGT 59.472 40.000 0.00 0.00 0.00 4.18
5866 6033 5.049405 GGCAAATATGAATAGTGGGTTCGAG 60.049 44.000 0.00 0.00 0.00 4.04
5867 6034 4.819630 GGCAAATATGAATAGTGGGTTCGA 59.180 41.667 0.00 0.00 0.00 3.71
5868 6035 4.023193 GGGCAAATATGAATAGTGGGTTCG 60.023 45.833 0.00 0.00 0.00 3.95
5869 6036 5.140454 AGGGCAAATATGAATAGTGGGTTC 58.860 41.667 0.00 0.00 0.00 3.62
5870 6037 5.142806 AGGGCAAATATGAATAGTGGGTT 57.857 39.130 0.00 0.00 0.00 4.11
5871 6038 4.814224 AGGGCAAATATGAATAGTGGGT 57.186 40.909 0.00 0.00 0.00 4.51
5872 6039 7.781324 ATTAAGGGCAAATATGAATAGTGGG 57.219 36.000 0.00 0.00 0.00 4.61
5878 6045 7.716560 GCTCCAAAATTAAGGGCAAATATGAAT 59.283 33.333 0.00 0.00 0.00 2.57
5879 6046 7.047271 GCTCCAAAATTAAGGGCAAATATGAA 58.953 34.615 0.00 0.00 0.00 2.57
5880 6047 6.155910 TGCTCCAAAATTAAGGGCAAATATGA 59.844 34.615 8.68 0.00 31.27 2.15
5881 6048 6.347696 TGCTCCAAAATTAAGGGCAAATATG 58.652 36.000 8.68 0.00 31.27 1.78
5882 6049 6.558488 TGCTCCAAAATTAAGGGCAAATAT 57.442 33.333 8.68 0.00 31.27 1.28
5883 6050 6.347696 CATGCTCCAAAATTAAGGGCAAATA 58.652 36.000 12.72 0.00 35.65 1.40
5884 6051 4.906747 TGCTCCAAAATTAAGGGCAAAT 57.093 36.364 8.68 0.00 31.27 2.32
5885 6052 4.577875 CATGCTCCAAAATTAAGGGCAAA 58.422 39.130 12.72 0.00 35.65 3.68
5886 6053 3.619487 GCATGCTCCAAAATTAAGGGCAA 60.619 43.478 11.37 2.73 35.65 4.52
5887 6054 2.093553 GCATGCTCCAAAATTAAGGGCA 60.094 45.455 11.37 11.73 36.18 5.36
5888 6055 2.169144 AGCATGCTCCAAAATTAAGGGC 59.831 45.455 16.30 1.01 0.00 5.19
5889 6056 4.476628 AAGCATGCTCCAAAATTAAGGG 57.523 40.909 22.93 0.00 0.00 3.95
5890 6057 8.496707 AATTTAAGCATGCTCCAAAATTAAGG 57.503 30.769 28.79 0.00 0.00 2.69
5891 6058 9.763465 CAAATTTAAGCATGCTCCAAAATTAAG 57.237 29.630 29.43 24.19 30.15 1.85
5892 6059 8.235905 GCAAATTTAAGCATGCTCCAAAATTAA 58.764 29.630 29.43 18.94 35.93 1.40
5893 6060 7.148272 GGCAAATTTAAGCATGCTCCAAAATTA 60.148 33.333 29.43 15.27 38.79 1.40
5894 6061 6.349528 GGCAAATTTAAGCATGCTCCAAAATT 60.350 34.615 26.63 26.63 38.79 1.82
5895 6062 5.124297 GGCAAATTTAAGCATGCTCCAAAAT 59.876 36.000 22.93 21.74 38.79 1.82
5896 6063 4.455190 GGCAAATTTAAGCATGCTCCAAAA 59.545 37.500 22.93 20.55 38.79 2.44
5897 6064 4.002316 GGCAAATTTAAGCATGCTCCAAA 58.998 39.130 22.93 22.66 38.79 3.28
5898 6065 3.598299 GGCAAATTTAAGCATGCTCCAA 58.402 40.909 22.93 16.84 38.79 3.53
5899 6066 2.093553 GGGCAAATTTAAGCATGCTCCA 60.094 45.455 22.93 9.44 38.79 3.86
5900 6067 2.554142 GGGCAAATTTAAGCATGCTCC 58.446 47.619 22.93 14.79 38.79 4.70
5901 6068 2.169144 AGGGGCAAATTTAAGCATGCTC 59.831 45.455 22.93 5.36 38.56 4.26
5902 6069 2.169144 GAGGGGCAAATTTAAGCATGCT 59.831 45.455 16.30 16.30 38.79 3.79
5903 6070 2.169144 AGAGGGGCAAATTTAAGCATGC 59.831 45.455 10.51 10.51 38.06 4.06
5904 6071 3.788937 CAGAGGGGCAAATTTAAGCATG 58.211 45.455 3.25 0.00 0.00 4.06
5905 6072 2.169144 GCAGAGGGGCAAATTTAAGCAT 59.831 45.455 3.25 0.00 0.00 3.79
5906 6073 1.550072 GCAGAGGGGCAAATTTAAGCA 59.450 47.619 3.25 0.00 0.00 3.91
5907 6074 1.134699 GGCAGAGGGGCAAATTTAAGC 60.135 52.381 0.00 0.00 42.77 3.09
5908 6075 1.134946 CGGCAGAGGGGCAAATTTAAG 59.865 52.381 0.00 0.00 43.60 1.85
5909 6076 1.181786 CGGCAGAGGGGCAAATTTAA 58.818 50.000 0.00 0.00 43.60 1.52
5910 6077 0.039035 ACGGCAGAGGGGCAAATTTA 59.961 50.000 0.00 0.00 43.60 1.40
5911 6078 1.228862 ACGGCAGAGGGGCAAATTT 60.229 52.632 0.00 0.00 43.60 1.82
5912 6079 1.678970 GACGGCAGAGGGGCAAATT 60.679 57.895 0.00 0.00 43.60 1.82
5913 6080 2.044946 GACGGCAGAGGGGCAAAT 60.045 61.111 0.00 0.00 43.60 2.32
5914 6081 3.126703 TTGACGGCAGAGGGGCAAA 62.127 57.895 0.00 0.00 43.60 3.68
5915 6082 3.551496 CTTGACGGCAGAGGGGCAA 62.551 63.158 0.00 0.00 43.60 4.52
5916 6083 4.020617 CTTGACGGCAGAGGGGCA 62.021 66.667 0.00 0.00 43.60 5.36
5917 6084 3.959991 GACTTGACGGCAGAGGGGC 62.960 68.421 0.00 0.00 39.06 5.80
5918 6085 2.266055 GACTTGACGGCAGAGGGG 59.734 66.667 0.00 0.00 0.00 4.79
5919 6086 1.374758 GTGACTTGACGGCAGAGGG 60.375 63.158 0.00 0.00 0.00 4.30
5920 6087 1.374758 GGTGACTTGACGGCAGAGG 60.375 63.158 0.00 0.00 0.00 3.69
5921 6088 1.668294 AGGTGACTTGACGGCAGAG 59.332 57.895 0.00 0.00 37.44 3.35
5922 6089 3.870955 AGGTGACTTGACGGCAGA 58.129 55.556 0.00 0.00 37.44 4.26
5933 6100 4.822350 GGAAGGGCATTTCTATAAGGTGAC 59.178 45.833 0.00 0.00 0.00 3.67
5934 6101 4.476846 TGGAAGGGCATTTCTATAAGGTGA 59.523 41.667 0.00 0.00 0.00 4.02
5935 6102 4.792068 TGGAAGGGCATTTCTATAAGGTG 58.208 43.478 0.00 0.00 0.00 4.00
5936 6103 5.669798 ATGGAAGGGCATTTCTATAAGGT 57.330 39.130 0.00 0.00 0.00 3.50
5937 6104 5.946377 GGTATGGAAGGGCATTTCTATAAGG 59.054 44.000 8.06 0.00 33.91 2.69
5938 6105 5.643777 CGGTATGGAAGGGCATTTCTATAAG 59.356 44.000 8.06 4.03 33.91 1.73
5939 6106 5.072600 ACGGTATGGAAGGGCATTTCTATAA 59.927 40.000 8.06 0.00 33.91 0.98
5940 6107 4.595781 ACGGTATGGAAGGGCATTTCTATA 59.404 41.667 0.00 0.00 31.72 1.31
5941 6108 3.394606 ACGGTATGGAAGGGCATTTCTAT 59.605 43.478 0.00 0.00 33.54 1.98
5942 6109 2.775384 ACGGTATGGAAGGGCATTTCTA 59.225 45.455 0.00 0.00 0.00 2.10
5943 6110 1.564348 ACGGTATGGAAGGGCATTTCT 59.436 47.619 0.00 0.00 0.00 2.52
5944 6111 2.052782 ACGGTATGGAAGGGCATTTC 57.947 50.000 0.00 0.00 0.00 2.17
5945 6112 2.525105 AACGGTATGGAAGGGCATTT 57.475 45.000 0.00 0.00 0.00 2.32
5946 6113 2.422377 GGTAACGGTATGGAAGGGCATT 60.422 50.000 0.00 0.00 0.00 3.56
5947 6114 1.142262 GGTAACGGTATGGAAGGGCAT 59.858 52.381 0.00 0.00 0.00 4.40
5948 6115 0.542805 GGTAACGGTATGGAAGGGCA 59.457 55.000 0.00 0.00 0.00 5.36
5949 6116 3.391736 GGTAACGGTATGGAAGGGC 57.608 57.895 0.00 0.00 0.00 5.19
5966 6133 3.546714 AAGCCCTTTGACCGGACGG 62.547 63.158 9.46 9.56 42.03 4.79
5967 6134 1.599797 AAAGCCCTTTGACCGGACG 60.600 57.895 9.46 0.00 0.00 4.79
5968 6135 4.494515 AAAGCCCTTTGACCGGAC 57.505 55.556 9.46 1.07 0.00 4.79
6019 6186 7.822658 TCGATCCCGTAAAATTTCAGATTTTT 58.177 30.769 2.51 0.00 37.05 1.94
6020 6187 7.385778 TCGATCCCGTAAAATTTCAGATTTT 57.614 32.000 0.00 2.74 37.05 1.82
6021 6188 6.995511 TCGATCCCGTAAAATTTCAGATTT 57.004 33.333 0.00 0.00 37.05 2.17
6022 6189 6.821665 TCTTCGATCCCGTAAAATTTCAGATT 59.178 34.615 0.00 0.00 37.05 2.40
6023 6190 6.346096 TCTTCGATCCCGTAAAATTTCAGAT 58.654 36.000 0.00 0.00 37.05 2.90
6024 6191 5.726397 TCTTCGATCCCGTAAAATTTCAGA 58.274 37.500 0.00 0.00 37.05 3.27
6025 6192 6.604735 ATCTTCGATCCCGTAAAATTTCAG 57.395 37.500 0.00 0.00 37.05 3.02
6026 6193 7.270047 AGTATCTTCGATCCCGTAAAATTTCA 58.730 34.615 0.00 0.00 37.05 2.69
6027 6194 7.710766 AGTATCTTCGATCCCGTAAAATTTC 57.289 36.000 0.00 0.00 37.05 2.17
6028 6195 7.767198 TCAAGTATCTTCGATCCCGTAAAATTT 59.233 33.333 0.00 0.00 37.05 1.82
6029 6196 7.270047 TCAAGTATCTTCGATCCCGTAAAATT 58.730 34.615 0.00 0.00 37.05 1.82
6030 6197 6.812998 TCAAGTATCTTCGATCCCGTAAAAT 58.187 36.000 0.00 0.00 37.05 1.82
6031 6198 6.127535 ACTCAAGTATCTTCGATCCCGTAAAA 60.128 38.462 0.00 0.00 37.05 1.52
6032 6199 5.359009 ACTCAAGTATCTTCGATCCCGTAAA 59.641 40.000 0.00 0.00 37.05 2.01
6033 6200 4.885907 ACTCAAGTATCTTCGATCCCGTAA 59.114 41.667 0.00 0.00 37.05 3.18
6034 6201 4.275196 CACTCAAGTATCTTCGATCCCGTA 59.725 45.833 0.00 0.00 37.05 4.02
6035 6202 3.066900 CACTCAAGTATCTTCGATCCCGT 59.933 47.826 0.00 0.00 37.05 5.28
6036 6203 3.633235 CACTCAAGTATCTTCGATCCCG 58.367 50.000 0.00 0.00 37.07 5.14
6037 6204 3.385577 GCACTCAAGTATCTTCGATCCC 58.614 50.000 0.00 0.00 0.00 3.85
6038 6205 3.046390 CGCACTCAAGTATCTTCGATCC 58.954 50.000 0.00 0.00 0.00 3.36
6039 6206 2.469516 GCGCACTCAAGTATCTTCGATC 59.530 50.000 0.30 0.00 0.00 3.69
6040 6207 2.159240 TGCGCACTCAAGTATCTTCGAT 60.159 45.455 5.66 0.00 0.00 3.59
6041 6208 1.201414 TGCGCACTCAAGTATCTTCGA 59.799 47.619 5.66 0.00 0.00 3.71
6042 6209 1.629013 TGCGCACTCAAGTATCTTCG 58.371 50.000 5.66 0.00 0.00 3.79
6043 6210 2.349886 CCTTGCGCACTCAAGTATCTTC 59.650 50.000 11.12 0.00 41.29 2.87
6044 6211 2.289694 ACCTTGCGCACTCAAGTATCTT 60.290 45.455 11.12 0.00 41.29 2.40
6045 6212 1.276421 ACCTTGCGCACTCAAGTATCT 59.724 47.619 11.12 0.00 41.29 1.98
6046 6213 1.394917 CACCTTGCGCACTCAAGTATC 59.605 52.381 11.12 0.00 41.29 2.24
6047 6214 1.442769 CACCTTGCGCACTCAAGTAT 58.557 50.000 11.12 0.00 41.29 2.12
6048 6215 1.227999 GCACCTTGCGCACTCAAGTA 61.228 55.000 11.12 0.00 41.29 2.24
6049 6216 2.546494 GCACCTTGCGCACTCAAGT 61.546 57.895 11.12 0.00 41.29 3.16
6050 6217 2.253452 GCACCTTGCGCACTCAAG 59.747 61.111 11.12 4.29 42.23 3.02
6059 6226 0.936600 AAAAATTGCACGCACCTTGC 59.063 45.000 0.00 0.00 40.69 4.01
6075 6242 4.508662 GGAATGTCCAAACACCACAAAAA 58.491 39.130 0.00 0.00 38.48 1.94
6076 6243 3.429547 CGGAATGTCCAAACACCACAAAA 60.430 43.478 0.00 0.00 38.48 2.44
6077 6244 2.099921 CGGAATGTCCAAACACCACAAA 59.900 45.455 0.00 0.00 38.48 2.83
6078 6245 1.678627 CGGAATGTCCAAACACCACAA 59.321 47.619 0.00 0.00 38.48 3.33
6079 6246 1.313772 CGGAATGTCCAAACACCACA 58.686 50.000 0.00 0.00 38.48 4.17
6080 6247 0.596082 CCGGAATGTCCAAACACCAC 59.404 55.000 0.00 0.00 38.48 4.16
6081 6248 0.538516 CCCGGAATGTCCAAACACCA 60.539 55.000 0.73 0.00 38.48 4.17
6082 6249 0.250989 TCCCGGAATGTCCAAACACC 60.251 55.000 0.73 0.00 38.48 4.16
6083 6250 1.165270 CTCCCGGAATGTCCAAACAC 58.835 55.000 0.73 0.00 38.48 3.32
6084 6251 1.060729 TCTCCCGGAATGTCCAAACA 58.939 50.000 0.73 0.00 35.91 2.83
6085 6252 1.450025 GTCTCCCGGAATGTCCAAAC 58.550 55.000 0.73 0.00 35.91 2.93
6086 6253 0.326927 GGTCTCCCGGAATGTCCAAA 59.673 55.000 0.73 0.00 35.91 3.28
6087 6254 1.988015 GGTCTCCCGGAATGTCCAA 59.012 57.895 0.73 0.00 35.91 3.53
6088 6255 3.721868 GGTCTCCCGGAATGTCCA 58.278 61.111 0.73 0.00 35.91 4.02
6098 6265 2.266055 CCTTGCTCACGGTCTCCC 59.734 66.667 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.