Multiple sequence alignment - TraesCS2D01G148100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G148100 chr2D 100.000 3606 0 0 1 3606 89288309 89284704 0.000000e+00 6660.0
1 TraesCS2D01G148100 chr2D 100.000 436 0 0 3967 4402 89284343 89283908 0.000000e+00 806.0
2 TraesCS2D01G148100 chr2D 92.075 429 30 3 3967 4393 5201167 5200741 6.300000e-168 601.0
3 TraesCS2D01G148100 chr2D 91.364 440 30 7 3967 4401 548974213 548973777 2.930000e-166 595.0
4 TraesCS2D01G148100 chr2D 84.507 71 9 2 43 111 471697513 471697583 7.900000e-08 69.4
5 TraesCS2D01G148100 chr2B 93.763 1908 99 13 692 2596 141877653 141875763 0.000000e+00 2846.0
6 TraesCS2D01G148100 chr2B 93.606 1908 101 14 692 2596 141916215 141914326 0.000000e+00 2828.0
7 TraesCS2D01G148100 chr2B 94.489 871 47 1 2587 3457 141875719 141874850 0.000000e+00 1341.0
8 TraesCS2D01G148100 chr2B 94.374 871 48 1 2587 3457 141914282 141913413 0.000000e+00 1336.0
9 TraesCS2D01G148100 chr2B 91.809 818 53 7 1785 2596 141854474 141853665 0.000000e+00 1127.0
10 TraesCS2D01G148100 chr2B 93.614 642 41 0 2744 3385 141846108 141845467 0.000000e+00 959.0
11 TraesCS2D01G148100 chr2B 85.000 400 33 9 109 483 141878303 141877906 8.930000e-102 381.0
12 TraesCS2D01G148100 chr2B 84.788 401 33 9 109 483 141916866 141916468 1.160000e-100 377.0
13 TraesCS2D01G148100 chr2B 92.262 168 10 1 2587 2754 141853621 141853457 7.360000e-58 235.0
14 TraesCS2D01G148100 chr2B 88.276 145 12 2 3461 3605 141845365 141845226 7.570000e-38 169.0
15 TraesCS2D01G148100 chr2B 95.876 97 4 0 3509 3605 141870064 141869968 1.640000e-34 158.0
16 TraesCS2D01G148100 chr2B 95.876 97 4 0 3509 3605 141908626 141908530 1.640000e-34 158.0
17 TraesCS2D01G148100 chr2B 81.000 100 14 5 26 123 528842208 528842304 1.700000e-09 75.0
18 TraesCS2D01G148100 chr2A 93.433 1538 77 13 607 2131 89026635 89025109 0.000000e+00 2259.0
19 TraesCS2D01G148100 chr2A 94.391 1034 55 3 2426 3457 89024921 89023889 0.000000e+00 1585.0
20 TraesCS2D01G148100 chr2A 83.523 528 43 25 109 595 89027209 89026685 1.870000e-123 453.0
21 TraesCS2D01G148100 chr2A 95.833 144 5 1 3462 3605 89023832 89023690 9.520000e-57 231.0
22 TraesCS2D01G148100 chr2A 88.083 193 23 0 2234 2426 625275035 625274843 3.420000e-56 230.0
23 TraesCS2D01G148100 chr2A 95.098 102 4 1 2130 2231 89025014 89024914 4.560000e-35 159.0
24 TraesCS2D01G148100 chr2A 97.368 38 1 0 2430 2467 695421816 695421853 1.020000e-06 65.8
25 TraesCS2D01G148100 chr6D 93.135 437 27 2 3967 4401 436537039 436537474 4.800000e-179 638.0
26 TraesCS2D01G148100 chr7D 92.922 438 27 3 3967 4401 618899697 618900133 6.210000e-178 634.0
27 TraesCS2D01G148100 chr7D 92.273 440 28 6 3967 4401 597508512 597508950 1.740000e-173 619.0
28 TraesCS2D01G148100 chr7D 90.888 439 36 3 3967 4401 557974797 557975235 1.760000e-163 586.0
29 TraesCS2D01G148100 chr5D 92.009 438 30 4 3967 4401 495289982 495289547 1.050000e-170 610.0
30 TraesCS2D01G148100 chr5D 88.136 59 7 0 2571 2629 35527414 35527356 2.200000e-08 71.3
31 TraesCS2D01G148100 chr3D 91.324 438 32 4 3967 4401 121908131 121907697 1.050000e-165 593.0
32 TraesCS2D01G148100 chr3D 91.096 438 32 6 3967 4401 381000615 381000182 1.760000e-163 586.0
33 TraesCS2D01G148100 chr3D 87.374 198 25 0 2231 2428 276769107 276769304 1.230000e-55 228.0
34 TraesCS2D01G148100 chr4D 90.000 190 19 0 2234 2423 342992202 342992391 3.400000e-61 246.0
35 TraesCS2D01G148100 chr4D 88.889 54 6 0 2576 2629 458992886 458992833 2.840000e-07 67.6
36 TraesCS2D01G148100 chr3A 88.660 194 22 0 2234 2427 161691085 161690892 2.050000e-58 237.0
37 TraesCS2D01G148100 chr6A 88.083 193 23 0 2231 2423 477215021 477215213 3.420000e-56 230.0
38 TraesCS2D01G148100 chr1A 86.893 206 26 1 2228 2432 337147289 337147494 3.420000e-56 230.0
39 TraesCS2D01G148100 chr7A 88.235 85 9 1 26 109 143136723 143136807 2.800000e-17 100.0
40 TraesCS2D01G148100 chr1B 87.342 79 9 1 33 110 512787249 512787327 6.060000e-14 89.8
41 TraesCS2D01G148100 chr6B 83.333 90 10 4 2429 2518 703307373 703307289 1.310000e-10 78.7
42 TraesCS2D01G148100 chr6B 90.909 55 4 1 55 109 701243765 701243818 6.110000e-09 73.1
43 TraesCS2D01G148100 chr5A 91.071 56 5 0 2573 2628 130150318 130150373 4.720000e-10 76.8
44 TraesCS2D01G148100 chr5B 87.879 66 5 3 44 107 89303264 89303328 1.700000e-09 75.0
45 TraesCS2D01G148100 chr1D 86.567 67 8 1 41 107 16272280 16272345 6.110000e-09 73.1
46 TraesCS2D01G148100 chr3B 85.294 68 7 3 45 110 228691788 228691722 2.840000e-07 67.6
47 TraesCS2D01G148100 chr7B 84.058 69 9 2 43 109 600701670 600701738 1.020000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G148100 chr2D 89283908 89288309 4401 True 3733.000000 6660 100.000000 1 4402 2 chr2D.!!$R3 4401
1 TraesCS2D01G148100 chr2B 141874850 141878303 3453 True 1522.666667 2846 91.084000 109 3457 3 chr2B.!!$R5 3348
2 TraesCS2D01G148100 chr2B 141913413 141916866 3453 True 1513.666667 2828 90.922667 109 3457 3 chr2B.!!$R6 3348
3 TraesCS2D01G148100 chr2B 141853457 141854474 1017 True 681.000000 1127 92.035500 1785 2754 2 chr2B.!!$R4 969
4 TraesCS2D01G148100 chr2B 141845226 141846108 882 True 564.000000 959 90.945000 2744 3605 2 chr2B.!!$R3 861
5 TraesCS2D01G148100 chr2A 89023690 89027209 3519 True 937.400000 2259 92.455600 109 3605 5 chr2A.!!$R2 3496

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
444 475 0.035881 CTTCCTGCAGTGCTCAAGGA 59.964 55.000 16.62 16.62 0.00 3.36 F
598 756 0.106708 GTCAACTGCCTGTCCACTGA 59.893 55.000 0.00 0.00 0.00 3.41 F
1518 1727 0.108520 TGGCCGTGATACGAAAGTCC 60.109 55.000 0.00 0.00 46.05 3.85 F
2188 2495 1.068333 CCCTGGTGAAACATTTGCTCG 60.068 52.381 0.00 0.00 39.98 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2360 2672 0.113776 TCCCAACTCGTAGGGTCACT 59.886 55.000 0.00 0.0 45.64 3.41 R
2362 2674 1.946984 AATCCCAACTCGTAGGGTCA 58.053 50.000 0.00 0.0 45.64 4.02 R
2991 3359 1.138859 TGATAGCCCATGAGTTCACCG 59.861 52.381 0.00 0.0 0.00 4.94 R
3981 4401 0.030638 TACGGCGGGATACGTTAAGC 59.969 55.000 13.24 0.0 46.52 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.910688 GTCTGTGACCTTGGTCTGAA 57.089 50.000 19.11 5.65 0.00 3.02
20 21 2.484889 GTCTGTGACCTTGGTCTGAAC 58.515 52.381 19.11 10.65 0.00 3.18
21 22 2.103263 GTCTGTGACCTTGGTCTGAACT 59.897 50.000 19.11 0.00 0.00 3.01
22 23 2.771943 TCTGTGACCTTGGTCTGAACTT 59.228 45.455 19.11 0.00 0.00 2.66
23 24 2.874701 CTGTGACCTTGGTCTGAACTTG 59.125 50.000 19.11 5.17 0.00 3.16
24 25 2.238646 TGTGACCTTGGTCTGAACTTGT 59.761 45.455 19.11 0.00 0.00 3.16
25 26 3.452990 TGTGACCTTGGTCTGAACTTGTA 59.547 43.478 19.11 0.00 0.00 2.41
26 27 3.808174 GTGACCTTGGTCTGAACTTGTAC 59.192 47.826 19.11 3.87 0.00 2.90
27 28 3.709653 TGACCTTGGTCTGAACTTGTACT 59.290 43.478 19.11 0.00 0.00 2.73
28 29 4.163458 TGACCTTGGTCTGAACTTGTACTT 59.837 41.667 19.11 0.00 0.00 2.24
29 30 5.112129 ACCTTGGTCTGAACTTGTACTTT 57.888 39.130 0.00 0.00 0.00 2.66
30 31 4.881850 ACCTTGGTCTGAACTTGTACTTTG 59.118 41.667 0.00 0.00 0.00 2.77
31 32 4.881850 CCTTGGTCTGAACTTGTACTTTGT 59.118 41.667 0.00 0.00 0.00 2.83
32 33 5.220854 CCTTGGTCTGAACTTGTACTTTGTG 60.221 44.000 0.00 0.00 0.00 3.33
33 34 4.196193 TGGTCTGAACTTGTACTTTGTGG 58.804 43.478 0.00 0.00 0.00 4.17
34 35 3.003378 GGTCTGAACTTGTACTTTGTGGC 59.997 47.826 0.00 0.00 0.00 5.01
35 36 3.877508 GTCTGAACTTGTACTTTGTGGCT 59.122 43.478 0.00 0.00 0.00 4.75
36 37 5.054477 GTCTGAACTTGTACTTTGTGGCTA 58.946 41.667 0.00 0.00 0.00 3.93
37 38 5.050295 GTCTGAACTTGTACTTTGTGGCTAC 60.050 44.000 0.00 0.00 0.00 3.58
38 39 5.031066 TGAACTTGTACTTTGTGGCTACT 57.969 39.130 0.64 0.00 0.00 2.57
39 40 5.433526 TGAACTTGTACTTTGTGGCTACTT 58.566 37.500 0.64 0.00 0.00 2.24
40 41 5.883673 TGAACTTGTACTTTGTGGCTACTTT 59.116 36.000 0.64 0.00 0.00 2.66
41 42 5.751243 ACTTGTACTTTGTGGCTACTTTG 57.249 39.130 0.64 0.00 0.00 2.77
42 43 5.433526 ACTTGTACTTTGTGGCTACTTTGA 58.566 37.500 0.64 0.00 0.00 2.69
43 44 6.062095 ACTTGTACTTTGTGGCTACTTTGAT 58.938 36.000 0.64 0.00 0.00 2.57
44 45 6.546034 ACTTGTACTTTGTGGCTACTTTGATT 59.454 34.615 0.64 0.00 0.00 2.57
45 46 7.717875 ACTTGTACTTTGTGGCTACTTTGATTA 59.282 33.333 0.64 0.00 0.00 1.75
46 47 8.453238 TTGTACTTTGTGGCTACTTTGATTAA 57.547 30.769 0.64 0.00 0.00 1.40
47 48 8.630054 TGTACTTTGTGGCTACTTTGATTAAT 57.370 30.769 0.64 0.00 0.00 1.40
48 49 9.727859 TGTACTTTGTGGCTACTTTGATTAATA 57.272 29.630 0.64 0.00 0.00 0.98
69 70 9.872721 TTAATAAAATGATTGTGTGCATCATGT 57.127 25.926 0.64 0.00 35.45 3.21
70 71 7.764695 ATAAAATGATTGTGTGCATCATGTG 57.235 32.000 0.64 0.00 35.45 3.21
71 72 5.394224 AAATGATTGTGTGCATCATGTGA 57.606 34.783 0.64 0.00 35.45 3.58
72 73 5.592104 AATGATTGTGTGCATCATGTGAT 57.408 34.783 0.64 0.00 35.45 3.06
81 82 0.952280 CATCATGTGATGCAGAGGCC 59.048 55.000 9.81 0.00 44.44 5.19
82 83 0.549469 ATCATGTGATGCAGAGGCCA 59.451 50.000 5.01 0.00 40.13 5.36
83 84 0.107361 TCATGTGATGCAGAGGCCAG 60.107 55.000 5.01 0.00 40.13 4.85
84 85 1.101635 CATGTGATGCAGAGGCCAGG 61.102 60.000 5.01 0.00 40.13 4.45
85 86 2.124403 GTGATGCAGAGGCCAGGG 60.124 66.667 5.01 0.00 40.13 4.45
86 87 2.611800 TGATGCAGAGGCCAGGGT 60.612 61.111 5.01 0.00 40.13 4.34
87 88 1.306911 TGATGCAGAGGCCAGGGTA 60.307 57.895 5.01 0.00 40.13 3.69
88 89 0.913934 TGATGCAGAGGCCAGGGTAA 60.914 55.000 5.01 0.00 40.13 2.85
89 90 0.475906 GATGCAGAGGCCAGGGTAAT 59.524 55.000 5.01 0.00 40.13 1.89
90 91 0.475906 ATGCAGAGGCCAGGGTAATC 59.524 55.000 5.01 0.00 40.13 1.75
91 92 1.149401 GCAGAGGCCAGGGTAATCC 59.851 63.158 5.01 0.00 0.00 3.01
93 94 0.761802 CAGAGGCCAGGGTAATCCTC 59.238 60.000 5.01 2.46 46.12 3.71
94 95 0.400670 AGAGGCCAGGGTAATCCTCC 60.401 60.000 5.01 0.00 46.12 4.30
95 96 0.400670 GAGGCCAGGGTAATCCTCCT 60.401 60.000 5.01 0.00 46.12 3.69
96 97 0.046397 AGGCCAGGGTAATCCTCCTT 59.954 55.000 5.01 0.00 46.12 3.36
97 98 0.927029 GGCCAGGGTAATCCTCCTTT 59.073 55.000 0.00 0.00 46.12 3.11
98 99 1.288037 GGCCAGGGTAATCCTCCTTTT 59.712 52.381 0.00 0.00 46.12 2.27
99 100 2.656002 GCCAGGGTAATCCTCCTTTTC 58.344 52.381 0.00 0.00 46.12 2.29
100 101 2.919228 CCAGGGTAATCCTCCTTTTCG 58.081 52.381 0.00 0.00 46.12 3.46
101 102 2.504175 CCAGGGTAATCCTCCTTTTCGA 59.496 50.000 0.00 0.00 46.12 3.71
102 103 3.054655 CCAGGGTAATCCTCCTTTTCGAA 60.055 47.826 0.00 0.00 46.12 3.71
103 104 4.566907 CCAGGGTAATCCTCCTTTTCGAAA 60.567 45.833 6.47 6.47 46.12 3.46
104 105 5.007682 CAGGGTAATCCTCCTTTTCGAAAA 58.992 41.667 21.35 21.35 46.12 2.29
105 106 5.475564 CAGGGTAATCCTCCTTTTCGAAAAA 59.524 40.000 22.67 9.34 46.12 1.94
161 162 6.256539 TGACAATATCTTCATCGCTTCAGTTC 59.743 38.462 0.00 0.00 0.00 3.01
169 170 3.871006 TCATCGCTTCAGTTCGCAATTAT 59.129 39.130 0.00 0.00 0.00 1.28
173 174 4.740205 TCGCTTCAGTTCGCAATTATCTAG 59.260 41.667 0.00 0.00 0.00 2.43
180 181 7.489160 TCAGTTCGCAATTATCTAGTACATGT 58.511 34.615 2.69 2.69 0.00 3.21
271 289 7.327275 CGCAATTACCTAATCTCTGTACTCATC 59.673 40.741 0.00 0.00 0.00 2.92
335 364 7.879160 ACTTAAACCCACGTTGATGATTAGTAA 59.121 33.333 0.00 0.00 30.72 2.24
376 406 2.305635 TCTGCTTTGCTCTGGTTATCCA 59.694 45.455 0.00 0.00 42.05 3.41
379 409 4.088634 TGCTTTGCTCTGGTTATCCAATT 58.911 39.130 0.00 0.00 43.81 2.32
385 415 5.271598 TGCTCTGGTTATCCAATTTCCATT 58.728 37.500 0.00 0.00 43.81 3.16
388 418 7.014518 TGCTCTGGTTATCCAATTTCCATTATG 59.985 37.037 0.00 0.00 43.81 1.90
444 475 0.035881 CTTCCTGCAGTGCTCAAGGA 59.964 55.000 16.62 16.62 0.00 3.36
447 478 0.322277 CCTGCAGTGCTCAAGGATGT 60.322 55.000 17.60 0.00 0.00 3.06
451 482 2.813754 TGCAGTGCTCAAGGATGTTTAC 59.186 45.455 17.60 0.00 0.00 2.01
458 489 2.932614 CTCAAGGATGTTTACTGCCTCG 59.067 50.000 0.00 0.00 0.00 4.63
463 494 2.423577 GATGTTTACTGCCTCGTGGTT 58.576 47.619 5.26 0.00 35.27 3.67
465 496 1.414919 TGTTTACTGCCTCGTGGTTCT 59.585 47.619 5.26 0.00 35.27 3.01
467 498 2.163818 TTACTGCCTCGTGGTTCTTG 57.836 50.000 5.26 0.00 35.27 3.02
470 501 3.423154 GCCTCGTGGTTCTTGGCG 61.423 66.667 5.26 0.00 33.96 5.69
486 518 3.482809 CGTGTCGCCGACTCTCTA 58.517 61.111 19.12 0.00 33.15 2.43
488 520 0.316278 CGTGTCGCCGACTCTCTATG 60.316 60.000 19.12 0.00 33.15 2.23
490 522 1.604755 GTGTCGCCGACTCTCTATGAT 59.395 52.381 19.12 0.00 33.15 2.45
491 523 2.806818 GTGTCGCCGACTCTCTATGATA 59.193 50.000 19.12 0.00 33.15 2.15
492 524 3.067833 TGTCGCCGACTCTCTATGATAG 58.932 50.000 19.12 0.00 33.15 2.08
496 528 5.233476 GTCGCCGACTCTCTATGATAGATAG 59.767 48.000 10.56 11.88 35.73 2.08
533 691 7.276658 AGCACGATTTGTTTGAAACATTTGTAA 59.723 29.630 11.97 3.14 41.79 2.41
575 733 3.665745 TTACTTCGGTGGAGTGGTTAC 57.334 47.619 0.00 0.00 0.00 2.50
576 734 1.713297 ACTTCGGTGGAGTGGTTACT 58.287 50.000 0.00 0.00 40.66 2.24
583 741 3.547746 GGTGGAGTGGTTACTTTGTCAA 58.452 45.455 0.00 0.00 37.25 3.18
588 746 2.949644 AGTGGTTACTTTGTCAACTGCC 59.050 45.455 0.00 0.00 31.66 4.85
595 753 1.334869 CTTTGTCAACTGCCTGTCCAC 59.665 52.381 0.00 0.00 0.00 4.02
597 755 0.179048 TGTCAACTGCCTGTCCACTG 60.179 55.000 0.00 0.00 0.00 3.66
598 756 0.106708 GTCAACTGCCTGTCCACTGA 59.893 55.000 0.00 0.00 0.00 3.41
601 759 1.808945 CAACTGCCTGTCCACTGATTC 59.191 52.381 0.00 0.00 0.00 2.52
602 760 1.356124 ACTGCCTGTCCACTGATTCT 58.644 50.000 0.00 0.00 0.00 2.40
604 762 2.906389 ACTGCCTGTCCACTGATTCTTA 59.094 45.455 0.00 0.00 0.00 2.10
610 806 5.121811 CCTGTCCACTGATTCTTAAGATGG 58.878 45.833 13.70 13.70 0.00 3.51
626 822 1.410850 ATGGGCGTATGGACCCTCTG 61.411 60.000 0.00 0.00 46.96 3.35
627 823 2.808206 GGGCGTATGGACCCTCTGG 61.808 68.421 0.00 0.00 43.36 3.86
628 824 2.109181 GCGTATGGACCCTCTGGC 59.891 66.667 0.00 0.00 33.59 4.85
642 841 4.280929 ACCCTCTGGCAATTGTTTCTTTAC 59.719 41.667 7.40 0.00 33.59 2.01
646 845 5.782047 TCTGGCAATTGTTTCTTTACATGG 58.218 37.500 7.40 0.00 0.00 3.66
673 872 4.171005 ACAATCATTGCAATTGCGAAGAG 58.829 39.130 25.12 17.13 45.83 2.85
677 876 2.925578 TTGCAATTGCGAAGAGGATG 57.074 45.000 24.58 0.00 45.83 3.51
679 878 0.383231 GCAATTGCGAAGAGGATGGG 59.617 55.000 15.87 0.00 0.00 4.00
680 879 1.755179 CAATTGCGAAGAGGATGGGT 58.245 50.000 0.00 0.00 0.00 4.51
684 883 2.691409 TGCGAAGAGGATGGGTAAAG 57.309 50.000 0.00 0.00 0.00 1.85
686 885 2.569853 TGCGAAGAGGATGGGTAAAGAA 59.430 45.455 0.00 0.00 0.00 2.52
687 886 3.198872 GCGAAGAGGATGGGTAAAGAAG 58.801 50.000 0.00 0.00 0.00 2.85
688 887 3.118738 GCGAAGAGGATGGGTAAAGAAGA 60.119 47.826 0.00 0.00 0.00 2.87
689 888 4.443598 GCGAAGAGGATGGGTAAAGAAGAT 60.444 45.833 0.00 0.00 0.00 2.40
690 889 5.053145 CGAAGAGGATGGGTAAAGAAGATG 58.947 45.833 0.00 0.00 0.00 2.90
741 940 6.015434 TGTCTATTGAGCTCTTACACTTGTCA 60.015 38.462 16.19 0.00 0.00 3.58
745 944 4.119862 TGAGCTCTTACACTTGTCAACAC 58.880 43.478 16.19 0.00 0.00 3.32
746 945 3.467803 AGCTCTTACACTTGTCAACACC 58.532 45.455 0.00 0.00 0.00 4.16
747 946 3.118408 AGCTCTTACACTTGTCAACACCA 60.118 43.478 0.00 0.00 0.00 4.17
748 947 3.248602 GCTCTTACACTTGTCAACACCAG 59.751 47.826 0.00 0.00 0.00 4.00
749 948 4.693283 CTCTTACACTTGTCAACACCAGA 58.307 43.478 0.00 0.00 0.00 3.86
777 976 1.739466 CATGGCGCATCACTTAGTTGT 59.261 47.619 10.83 0.00 0.00 3.32
791 990 4.217118 ACTTAGTTGTAGTACACCACCTCG 59.783 45.833 1.43 0.00 0.00 4.63
967 1167 3.193479 AGATCACGTCTCACTATGCAACA 59.807 43.478 0.00 0.00 28.45 3.33
993 1193 3.701604 GAAGCACGGCTCGGACGAT 62.702 63.158 6.14 0.00 38.25 3.73
1140 1340 2.688446 CGAGCTCTTATATGGGCCGATA 59.312 50.000 12.85 10.16 0.00 2.92
1265 1465 2.031163 GCAAGAGGTCCGCACACT 59.969 61.111 0.00 0.00 0.00 3.55
1513 1722 0.179094 GGTGATGGCCGTGATACGAA 60.179 55.000 0.00 0.00 46.05 3.85
1518 1727 0.108520 TGGCCGTGATACGAAAGTCC 60.109 55.000 0.00 0.00 46.05 3.85
1562 1771 4.264253 GACATGGGTGAGATGATGAACAA 58.736 43.478 0.00 0.00 0.00 2.83
1731 1940 3.065925 GGCTCACCAGATCTAATGTTTGC 59.934 47.826 0.00 4.09 35.26 3.68
1840 2049 3.890756 ACATGACAGACAAGATGGCAAAA 59.109 39.130 0.00 0.00 39.65 2.44
1877 2086 9.593134 GAGTGACTTCATTGATGTACTTCTATT 57.407 33.333 9.87 0.00 0.00 1.73
1930 2139 1.340795 CCAGAGAGCAAATCAAGGCCT 60.341 52.381 0.00 0.00 0.00 5.19
1933 2142 1.747924 GAGAGCAAATCAAGGCCTTCC 59.252 52.381 17.29 0.00 0.00 3.46
2013 2223 2.989422 AAGCCGTTTGAGATTTTCCG 57.011 45.000 0.00 0.00 0.00 4.30
2188 2495 1.068333 CCCTGGTGAAACATTTGCTCG 60.068 52.381 0.00 0.00 39.98 5.03
2232 2544 9.455847 GGAATCCAATAATTCTGATTCTTTTCG 57.544 33.333 10.00 0.00 41.65 3.46
2255 2567 6.700960 TCGTTGTTAAGGAAATCGTTTACTGA 59.299 34.615 6.57 1.35 33.05 3.41
2258 2570 9.968743 GTTGTTAAGGAAATCGTTTACTGATAG 57.031 33.333 6.57 0.00 33.05 2.08
2259 2571 9.715121 TTGTTAAGGAAATCGTTTACTGATAGT 57.285 29.630 6.57 0.00 33.05 2.12
2260 2572 9.715121 TGTTAAGGAAATCGTTTACTGATAGTT 57.285 29.630 6.57 0.00 33.05 2.24
2261 2573 9.968743 GTTAAGGAAATCGTTTACTGATAGTTG 57.031 33.333 0.00 0.00 33.05 3.16
2301 2613 7.093465 CGAGTAGGGGATTAATAGGCTAATCAA 60.093 40.741 9.93 0.71 39.21 2.57
2305 2617 7.234355 AGGGGATTAATAGGCTAATCAACAAG 58.766 38.462 9.93 0.00 39.21 3.16
2375 2687 3.693578 GCTACTTAGTGACCCTACGAGTT 59.306 47.826 0.00 0.00 0.00 3.01
2386 2698 4.035112 ACCCTACGAGTTGGGATTAATCA 58.965 43.478 25.35 0.00 46.62 2.57
2390 2702 4.156455 ACGAGTTGGGATTAATCAGCAT 57.844 40.909 17.07 0.00 0.00 3.79
2398 2710 8.052748 AGTTGGGATTAATCAGCATGTTAACTA 58.947 33.333 17.07 0.00 37.40 2.24
2409 2721 6.755141 TCAGCATGTTAACTAGTTAATCGGAC 59.245 38.462 26.49 16.59 37.37 4.79
2410 2722 6.533723 CAGCATGTTAACTAGTTAATCGGACA 59.466 38.462 26.49 20.82 37.37 4.02
2423 2735 8.110860 AGTTAATCGGACAAATTCTTGAACAT 57.889 30.769 0.00 0.00 36.33 2.71
2424 2736 8.023128 AGTTAATCGGACAAATTCTTGAACATG 58.977 33.333 0.00 0.00 36.33 3.21
2500 2812 7.962964 TCATCCATAAATAACATTCGAGGAC 57.037 36.000 0.00 0.00 0.00 3.85
2510 2822 2.028930 ACATTCGAGGACCTCTCAACAC 60.029 50.000 19.39 0.00 42.55 3.32
2567 2879 7.551974 TGACTAGTCATGACTTACTACCACTAC 59.448 40.741 32.14 11.56 42.54 2.73
2648 3015 1.316651 GGCTGCAATCTCCAGAATCC 58.683 55.000 0.50 0.00 32.03 3.01
2991 3359 0.393537 CCTTCTGGAGCATGGGTCAC 60.394 60.000 0.00 0.00 34.57 3.67
3132 3500 3.167921 TCAGTTTTTGTCGTTCGGAGA 57.832 42.857 0.00 0.00 0.00 3.71
3157 3525 1.061033 AGGAGGATCTGCCCTGGTATT 60.061 52.381 0.00 0.00 36.49 1.89
3207 3575 1.266989 GCTGGCAAACCTTGTGTACTC 59.733 52.381 0.00 0.00 36.63 2.59
3268 3636 4.092968 GGTATTGACATGACCGAAGTGTTC 59.907 45.833 0.00 0.00 0.00 3.18
3333 3701 5.299279 CCAAGAACCACTTAAGTGTGTGATT 59.701 40.000 29.05 20.40 44.21 2.57
3352 3720 6.072119 TGTGATTGTACGTCTCACATAACTCT 60.072 38.462 16.48 0.00 43.10 3.24
3360 3728 5.527582 ACGTCTCACATAACTCTTGCTTTTT 59.472 36.000 0.00 0.00 0.00 1.94
3419 3787 1.144913 TGAACTAGCAAAGTGGCCCTT 59.855 47.619 0.00 0.00 38.88 3.95
3423 3791 0.468958 TAGCAAAGTGGCCCTTGCAA 60.469 50.000 26.80 0.00 40.13 4.08
3459 3879 6.100004 AGGGCTATATTCGTGTATTGAATCG 58.900 40.000 0.00 0.00 37.28 3.34
3538 3958 3.318275 AGAGTATACACCCACGCTACATG 59.682 47.826 5.50 0.00 0.00 3.21
3550 3970 0.107993 GCTACATGCACAGAGAGGCA 60.108 55.000 0.00 0.00 45.23 4.75
3605 4025 1.534729 CTCAGCCCCCAAACACTAAC 58.465 55.000 0.00 0.00 0.00 2.34
3994 4414 2.869233 TACGGTGCTTAACGTATCCC 57.131 50.000 0.00 0.00 43.79 3.85
3995 4415 0.179129 ACGGTGCTTAACGTATCCCG 60.179 55.000 0.00 0.00 42.15 5.14
3996 4416 1.485032 CGGTGCTTAACGTATCCCGC 61.485 60.000 0.00 0.00 41.42 6.13
3997 4417 1.156034 GGTGCTTAACGTATCCCGCC 61.156 60.000 0.00 0.00 41.42 6.13
3998 4418 1.227031 TGCTTAACGTATCCCGCCG 60.227 57.895 0.00 0.00 41.42 6.46
3999 4419 1.227060 GCTTAACGTATCCCGCCGT 60.227 57.895 0.00 0.00 41.42 5.68
4000 4420 0.030638 GCTTAACGTATCCCGCCGTA 59.969 55.000 0.00 0.00 41.42 4.02
4001 4421 1.336240 GCTTAACGTATCCCGCCGTAT 60.336 52.381 0.00 0.00 41.42 3.06
4002 4422 2.322161 CTTAACGTATCCCGCCGTATG 58.678 52.381 0.00 0.00 41.42 2.39
4003 4423 0.039256 TAACGTATCCCGCCGTATGC 60.039 55.000 0.00 0.00 41.42 3.14
4015 4435 2.280524 GTATGCGGCGTGCCCATA 60.281 61.111 9.37 14.29 45.60 2.74
4016 4436 2.280524 TATGCGGCGTGCCCATAC 60.281 61.111 9.37 0.95 45.60 2.39
4017 4437 3.095347 TATGCGGCGTGCCCATACA 62.095 57.895 9.37 5.75 45.60 2.29
4018 4438 2.987282 TATGCGGCGTGCCCATACAG 62.987 60.000 9.37 0.00 45.60 2.74
4020 4440 4.467084 CGGCGTGCCCATACAGGT 62.467 66.667 5.08 0.00 34.66 4.00
4021 4441 2.904905 GGCGTGCCCATACAGGTA 59.095 61.111 0.00 0.00 34.66 3.08
4022 4442 1.227556 GGCGTGCCCATACAGGTAG 60.228 63.158 0.00 0.00 34.66 3.18
4023 4443 1.682451 GGCGTGCCCATACAGGTAGA 61.682 60.000 0.00 0.00 34.66 2.59
4024 4444 0.249489 GCGTGCCCATACAGGTAGAG 60.249 60.000 0.00 0.00 34.66 2.43
4025 4445 0.249489 CGTGCCCATACAGGTAGAGC 60.249 60.000 0.00 0.00 34.66 4.09
4026 4446 0.106894 GTGCCCATACAGGTAGAGCC 59.893 60.000 0.00 0.00 34.66 4.70
4027 4447 1.367840 GCCCATACAGGTAGAGCCG 59.632 63.158 0.00 0.00 43.70 5.52
4028 4448 1.113517 GCCCATACAGGTAGAGCCGA 61.114 60.000 0.00 0.00 43.70 5.54
4029 4449 0.962489 CCCATACAGGTAGAGCCGAG 59.038 60.000 0.00 0.00 43.70 4.63
4030 4450 0.315568 CCATACAGGTAGAGCCGAGC 59.684 60.000 0.00 0.00 43.70 5.03
4031 4451 0.039978 CATACAGGTAGAGCCGAGCG 60.040 60.000 0.00 0.00 43.70 5.03
4032 4452 1.797211 ATACAGGTAGAGCCGAGCGC 61.797 60.000 0.00 0.00 43.70 5.92
4033 4453 3.826754 CAGGTAGAGCCGAGCGCA 61.827 66.667 11.47 0.00 43.70 6.09
4034 4454 3.827898 AGGTAGAGCCGAGCGCAC 61.828 66.667 11.47 0.96 43.70 5.34
4062 4482 4.664677 GATACGGCCGGCTCGCAT 62.665 66.667 31.76 24.23 0.00 4.73
4063 4483 4.969196 ATACGGCCGGCTCGCATG 62.969 66.667 31.76 15.06 0.00 4.06
4068 4488 4.530857 GCCGGCTCGCATGTACCT 62.531 66.667 22.15 0.00 0.00 3.08
4069 4489 2.279517 CCGGCTCGCATGTACCTC 60.280 66.667 0.00 0.00 0.00 3.85
4070 4490 2.279517 CGGCTCGCATGTACCTCC 60.280 66.667 0.00 0.00 0.00 4.30
4071 4491 2.786495 CGGCTCGCATGTACCTCCT 61.786 63.158 0.00 0.00 0.00 3.69
4072 4492 1.068250 GGCTCGCATGTACCTCCTC 59.932 63.158 0.00 0.00 0.00 3.71
4073 4493 1.068250 GCTCGCATGTACCTCCTCC 59.932 63.158 0.00 0.00 0.00 4.30
4074 4494 1.742768 CTCGCATGTACCTCCTCCC 59.257 63.158 0.00 0.00 0.00 4.30
4075 4495 2.076622 CTCGCATGTACCTCCTCCCG 62.077 65.000 0.00 0.00 0.00 5.14
4076 4496 2.423898 CGCATGTACCTCCTCCCGT 61.424 63.158 0.00 0.00 0.00 5.28
4077 4497 1.442148 GCATGTACCTCCTCCCGTC 59.558 63.158 0.00 0.00 0.00 4.79
4078 4498 1.734137 CATGTACCTCCTCCCGTCG 59.266 63.158 0.00 0.00 0.00 5.12
4079 4499 2.125961 ATGTACCTCCTCCCGTCGC 61.126 63.158 0.00 0.00 0.00 5.19
4080 4500 3.885521 GTACCTCCTCCCGTCGCG 61.886 72.222 0.00 0.00 0.00 5.87
4087 4507 3.408020 CTCCCGTCGCGCGAAAAA 61.408 61.111 36.57 18.80 44.77 1.94
4106 4526 1.892209 AAAAGACCCACAACCTAGCG 58.108 50.000 0.00 0.00 0.00 4.26
4107 4527 0.763035 AAAGACCCACAACCTAGCGT 59.237 50.000 0.00 0.00 0.00 5.07
4108 4528 0.763035 AAGACCCACAACCTAGCGTT 59.237 50.000 0.00 0.00 33.90 4.84
4122 4542 2.809174 CGTTGATCACGCGGCTCA 60.809 61.111 12.47 7.28 43.37 4.26
4123 4543 2.167219 CGTTGATCACGCGGCTCAT 61.167 57.895 12.47 0.00 43.37 2.90
4124 4544 1.695893 CGTTGATCACGCGGCTCATT 61.696 55.000 12.47 0.00 43.37 2.57
4125 4545 0.247814 GTTGATCACGCGGCTCATTG 60.248 55.000 12.47 0.00 0.00 2.82
4126 4546 1.980951 TTGATCACGCGGCTCATTGC 61.981 55.000 12.47 0.00 41.94 3.56
4127 4547 2.436469 ATCACGCGGCTCATTGCA 60.436 55.556 12.47 0.00 45.15 4.08
4128 4548 1.980951 GATCACGCGGCTCATTGCAA 61.981 55.000 12.47 0.00 45.15 4.08
4129 4549 2.257286 ATCACGCGGCTCATTGCAAC 62.257 55.000 12.47 0.00 45.15 4.17
4130 4550 4.088762 ACGCGGCTCATTGCAACG 62.089 61.111 12.47 0.84 45.15 4.10
4131 4551 4.088762 CGCGGCTCATTGCAACGT 62.089 61.111 0.00 0.00 45.15 3.99
4132 4552 2.202349 GCGGCTCATTGCAACGTC 60.202 61.111 0.00 0.00 45.15 4.34
4133 4553 2.096406 CGGCTCATTGCAACGTCG 59.904 61.111 0.00 2.72 45.15 5.12
4134 4554 2.202349 GGCTCATTGCAACGTCGC 60.202 61.111 0.00 0.70 45.15 5.19
4135 4555 2.202349 GCTCATTGCAACGTCGCC 60.202 61.111 0.00 0.00 42.31 5.54
4136 4556 2.480555 CTCATTGCAACGTCGCCC 59.519 61.111 0.00 0.00 0.00 6.13
4137 4557 3.039202 CTCATTGCAACGTCGCCCC 62.039 63.158 0.00 0.00 0.00 5.80
4138 4558 3.361158 CATTGCAACGTCGCCCCA 61.361 61.111 0.00 0.00 0.00 4.96
4139 4559 2.361104 ATTGCAACGTCGCCCCAT 60.361 55.556 0.00 0.00 0.00 4.00
4140 4560 2.406616 ATTGCAACGTCGCCCCATC 61.407 57.895 0.00 0.00 0.00 3.51
4190 4610 4.176752 GCCTTTCCCCGCCGATCT 62.177 66.667 0.00 0.00 0.00 2.75
4191 4611 2.803817 GCCTTTCCCCGCCGATCTA 61.804 63.158 0.00 0.00 0.00 1.98
4192 4612 1.367840 CCTTTCCCCGCCGATCTAG 59.632 63.158 0.00 0.00 0.00 2.43
4193 4613 1.301009 CTTTCCCCGCCGATCTAGC 60.301 63.158 0.00 0.00 0.00 3.42
4194 4614 1.749334 CTTTCCCCGCCGATCTAGCT 61.749 60.000 0.00 0.00 0.00 3.32
4195 4615 2.028125 TTTCCCCGCCGATCTAGCTG 62.028 60.000 0.00 0.00 0.00 4.24
4196 4616 4.671569 CCCCGCCGATCTAGCTGC 62.672 72.222 0.00 0.00 0.00 5.25
4200 4620 4.161030 GCCGATCTAGCTGCGATC 57.839 61.111 14.50 14.50 35.16 3.69
4201 4621 1.287191 GCCGATCTAGCTGCGATCA 59.713 57.895 20.79 0.00 37.68 2.92
4202 4622 1.006314 GCCGATCTAGCTGCGATCAC 61.006 60.000 20.79 12.30 37.68 3.06
4203 4623 0.727457 CCGATCTAGCTGCGATCACG 60.727 60.000 20.79 12.32 37.68 4.35
4213 4633 4.983090 CGATCACGCTGCCAATTC 57.017 55.556 0.00 0.00 0.00 2.17
4214 4634 1.353103 CGATCACGCTGCCAATTCC 59.647 57.895 0.00 0.00 0.00 3.01
4215 4635 1.368345 CGATCACGCTGCCAATTCCA 61.368 55.000 0.00 0.00 0.00 3.53
4216 4636 0.810648 GATCACGCTGCCAATTCCAA 59.189 50.000 0.00 0.00 0.00 3.53
4217 4637 0.527565 ATCACGCTGCCAATTCCAAC 59.472 50.000 0.00 0.00 0.00 3.77
4218 4638 1.442520 CACGCTGCCAATTCCAACG 60.443 57.895 0.00 0.00 0.00 4.10
4219 4639 1.896660 ACGCTGCCAATTCCAACGT 60.897 52.632 0.00 0.00 31.03 3.99
4220 4640 1.154225 CGCTGCCAATTCCAACGTC 60.154 57.895 0.00 0.00 0.00 4.34
4221 4641 1.577328 CGCTGCCAATTCCAACGTCT 61.577 55.000 0.00 0.00 0.00 4.18
4222 4642 0.598065 GCTGCCAATTCCAACGTCTT 59.402 50.000 0.00 0.00 0.00 3.01
4223 4643 1.401539 GCTGCCAATTCCAACGTCTTC 60.402 52.381 0.00 0.00 0.00 2.87
4224 4644 1.200020 CTGCCAATTCCAACGTCTTCC 59.800 52.381 0.00 0.00 0.00 3.46
4225 4645 0.526211 GCCAATTCCAACGTCTTCCC 59.474 55.000 0.00 0.00 0.00 3.97
4226 4646 0.802494 CCAATTCCAACGTCTTCCCG 59.198 55.000 0.00 0.00 0.00 5.14
4227 4647 1.519408 CAATTCCAACGTCTTCCCGT 58.481 50.000 0.00 0.00 44.23 5.28
4228 4648 1.463444 CAATTCCAACGTCTTCCCGTC 59.537 52.381 0.00 0.00 40.85 4.79
4229 4649 0.036671 ATTCCAACGTCTTCCCGTCC 60.037 55.000 0.00 0.00 40.85 4.79
4230 4650 2.424705 TTCCAACGTCTTCCCGTCCG 62.425 60.000 0.00 0.00 40.85 4.79
4231 4651 2.431942 CAACGTCTTCCCGTCCGG 60.432 66.667 0.00 0.00 40.85 5.14
4232 4652 4.368543 AACGTCTTCCCGTCCGGC 62.369 66.667 0.00 0.00 40.85 6.13
4256 4676 4.109675 CCGCCTTTCCCCACCGAT 62.110 66.667 0.00 0.00 0.00 4.18
4257 4677 2.513897 CGCCTTTCCCCACCGATC 60.514 66.667 0.00 0.00 0.00 3.69
4258 4678 2.513897 GCCTTTCCCCACCGATCG 60.514 66.667 8.51 8.51 0.00 3.69
4259 4679 2.513897 CCTTTCCCCACCGATCGC 60.514 66.667 10.32 0.00 0.00 4.58
4260 4680 2.513897 CTTTCCCCACCGATCGCC 60.514 66.667 10.32 0.00 0.00 5.54
4261 4681 4.460683 TTTCCCCACCGATCGCCG 62.461 66.667 10.32 1.96 38.18 6.46
4266 4686 4.221422 CCACCGATCGCCGACCAT 62.221 66.667 10.32 0.00 41.76 3.55
4267 4687 2.202878 CACCGATCGCCGACCATT 60.203 61.111 10.32 0.00 41.76 3.16
4268 4688 2.106332 ACCGATCGCCGACCATTC 59.894 61.111 10.32 0.00 41.76 2.67
4269 4689 2.417516 CCGATCGCCGACCATTCT 59.582 61.111 10.32 0.00 41.76 2.40
4270 4690 1.661821 CCGATCGCCGACCATTCTC 60.662 63.158 10.32 0.00 41.76 2.87
4271 4691 1.661821 CGATCGCCGACCATTCTCC 60.662 63.158 0.26 0.00 41.76 3.71
4272 4692 1.301009 GATCGCCGACCATTCTCCC 60.301 63.158 0.00 0.00 0.00 4.30
4273 4693 1.749334 GATCGCCGACCATTCTCCCT 61.749 60.000 0.00 0.00 0.00 4.20
4274 4694 2.032860 ATCGCCGACCATTCTCCCTG 62.033 60.000 0.00 0.00 0.00 4.45
4275 4695 2.990479 GCCGACCATTCTCCCTGT 59.010 61.111 0.00 0.00 0.00 4.00
4276 4696 1.153349 GCCGACCATTCTCCCTGTC 60.153 63.158 0.00 0.00 0.00 3.51
4277 4697 1.617947 GCCGACCATTCTCCCTGTCT 61.618 60.000 0.00 0.00 0.00 3.41
4278 4698 0.905357 CCGACCATTCTCCCTGTCTT 59.095 55.000 0.00 0.00 0.00 3.01
4279 4699 1.406069 CCGACCATTCTCCCTGTCTTG 60.406 57.143 0.00 0.00 0.00 3.02
4280 4700 1.550524 CGACCATTCTCCCTGTCTTGA 59.449 52.381 0.00 0.00 0.00 3.02
4281 4701 2.675317 CGACCATTCTCCCTGTCTTGAC 60.675 54.545 0.00 0.00 0.00 3.18
4282 4702 1.630878 ACCATTCTCCCTGTCTTGACC 59.369 52.381 0.00 0.00 0.00 4.02
4283 4703 1.065126 CCATTCTCCCTGTCTTGACCC 60.065 57.143 0.00 0.00 0.00 4.46
4284 4704 0.905357 ATTCTCCCTGTCTTGACCCG 59.095 55.000 0.00 0.00 0.00 5.28
4285 4705 1.192146 TTCTCCCTGTCTTGACCCGG 61.192 60.000 0.00 0.00 0.00 5.73
4286 4706 2.606519 TCCCTGTCTTGACCCGGG 60.607 66.667 22.25 22.25 36.21 5.73
4287 4707 2.606519 CCCTGTCTTGACCCGGGA 60.607 66.667 32.02 1.07 37.05 5.14
4288 4708 1.995626 CCCTGTCTTGACCCGGGAT 60.996 63.158 32.02 12.15 37.05 3.85
4289 4709 1.522569 CCTGTCTTGACCCGGGATC 59.477 63.158 32.02 21.22 0.00 3.36
4290 4710 0.978146 CCTGTCTTGACCCGGGATCT 60.978 60.000 32.02 3.91 0.00 2.75
4291 4711 0.176680 CTGTCTTGACCCGGGATCTG 59.823 60.000 32.02 14.62 0.00 2.90
4292 4712 1.264749 TGTCTTGACCCGGGATCTGG 61.265 60.000 32.02 16.27 0.00 3.86
4293 4713 2.190578 CTTGACCCGGGATCTGGC 59.809 66.667 32.02 9.33 0.00 4.85
4294 4714 3.406595 CTTGACCCGGGATCTGGCC 62.407 68.421 32.02 0.00 0.00 5.36
4311 4731 4.007940 CGCCACGGACGTTGTTGG 62.008 66.667 0.00 6.02 0.00 3.77
4312 4732 2.589442 GCCACGGACGTTGTTGGA 60.589 61.111 12.94 0.00 0.00 3.53
4313 4733 2.604174 GCCACGGACGTTGTTGGAG 61.604 63.158 12.94 0.00 0.00 3.86
4314 4734 1.227438 CCACGGACGTTGTTGGAGT 60.227 57.895 4.66 0.00 0.00 3.85
4315 4735 0.812412 CCACGGACGTTGTTGGAGTT 60.812 55.000 4.66 0.00 0.00 3.01
4316 4736 0.303493 CACGGACGTTGTTGGAGTTG 59.697 55.000 0.00 0.00 0.00 3.16
4317 4737 1.278637 CGGACGTTGTTGGAGTTGC 59.721 57.895 0.00 0.00 0.00 4.17
4318 4738 1.652563 GGACGTTGTTGGAGTTGCC 59.347 57.895 0.00 0.00 37.10 4.52
4319 4739 1.278637 GACGTTGTTGGAGTTGCCG 59.721 57.895 0.00 0.00 40.66 5.69
4320 4740 2.051345 CGTTGTTGGAGTTGCCGC 60.051 61.111 0.00 0.00 40.66 6.53
4321 4741 2.335011 GTTGTTGGAGTTGCCGCC 59.665 61.111 0.00 0.00 40.66 6.13
4322 4742 3.283684 TTGTTGGAGTTGCCGCCG 61.284 61.111 0.00 0.00 40.66 6.46
4323 4743 4.555709 TGTTGGAGTTGCCGCCGT 62.556 61.111 0.00 0.00 40.66 5.68
4324 4744 2.357760 GTTGGAGTTGCCGCCGTA 60.358 61.111 0.00 0.00 40.66 4.02
4325 4745 2.357760 TTGGAGTTGCCGCCGTAC 60.358 61.111 0.00 0.00 40.66 3.67
4326 4746 4.728102 TGGAGTTGCCGCCGTACG 62.728 66.667 8.69 8.69 40.66 3.67
4336 4756 4.232248 GCCGTACGCGATTTGGCC 62.232 66.667 15.93 0.00 39.83 5.36
4337 4757 2.510691 CCGTACGCGATTTGGCCT 60.511 61.111 15.93 0.00 41.33 5.19
4338 4758 2.522638 CCGTACGCGATTTGGCCTC 61.523 63.158 15.93 0.00 41.33 4.70
4339 4759 2.522638 CGTACGCGATTTGGCCTCC 61.523 63.158 15.93 0.00 41.33 4.30
4340 4760 2.202824 TACGCGATTTGGCCTCCG 60.203 61.111 15.93 3.15 0.00 4.63
4341 4761 3.009192 TACGCGATTTGGCCTCCGT 62.009 57.895 15.93 8.11 0.00 4.69
4342 4762 3.864686 CGCGATTTGGCCTCCGTG 61.865 66.667 0.00 5.06 0.00 4.94
4343 4763 4.179579 GCGATTTGGCCTCCGTGC 62.180 66.667 3.32 0.00 0.00 5.34
4344 4764 2.745884 CGATTTGGCCTCCGTGCA 60.746 61.111 3.32 0.00 0.00 4.57
4345 4765 2.753966 CGATTTGGCCTCCGTGCAG 61.754 63.158 3.32 0.00 0.00 4.41
4346 4766 2.361610 ATTTGGCCTCCGTGCAGG 60.362 61.111 3.32 0.00 42.97 4.85
4347 4767 3.210012 ATTTGGCCTCCGTGCAGGT 62.210 57.895 3.32 0.00 41.99 4.00
4348 4768 3.842925 TTTGGCCTCCGTGCAGGTC 62.843 63.158 3.32 0.00 41.99 3.85
4352 4772 4.778415 CCTCCGTGCAGGTCGTCG 62.778 72.222 5.57 0.00 41.99 5.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.103263 AGTTCAGACCAAGGTCACAGAC 59.897 50.000 20.52 12.70 46.76 3.51
1 2 2.398588 AGTTCAGACCAAGGTCACAGA 58.601 47.619 20.52 12.28 46.76 3.41
2 3 2.874701 CAAGTTCAGACCAAGGTCACAG 59.125 50.000 20.52 10.31 46.76 3.66
3 4 2.238646 ACAAGTTCAGACCAAGGTCACA 59.761 45.455 20.52 4.20 46.76 3.58
4 5 2.919228 ACAAGTTCAGACCAAGGTCAC 58.081 47.619 20.52 10.47 46.76 3.67
5 6 3.709653 AGTACAAGTTCAGACCAAGGTCA 59.290 43.478 20.52 0.00 46.76 4.02
6 7 4.338379 AGTACAAGTTCAGACCAAGGTC 57.662 45.455 11.29 11.29 44.86 3.85
7 8 4.772886 AAGTACAAGTTCAGACCAAGGT 57.227 40.909 0.00 0.00 0.00 3.50
8 9 4.881850 ACAAAGTACAAGTTCAGACCAAGG 59.118 41.667 0.00 0.00 0.00 3.61
9 10 5.220854 CCACAAAGTACAAGTTCAGACCAAG 60.221 44.000 0.00 0.00 0.00 3.61
10 11 4.638421 CCACAAAGTACAAGTTCAGACCAA 59.362 41.667 0.00 0.00 0.00 3.67
11 12 4.196193 CCACAAAGTACAAGTTCAGACCA 58.804 43.478 0.00 0.00 0.00 4.02
12 13 3.003378 GCCACAAAGTACAAGTTCAGACC 59.997 47.826 0.00 0.00 0.00 3.85
13 14 3.877508 AGCCACAAAGTACAAGTTCAGAC 59.122 43.478 0.00 0.00 0.00 3.51
14 15 4.150897 AGCCACAAAGTACAAGTTCAGA 57.849 40.909 0.00 0.00 0.00 3.27
15 16 5.057149 AGTAGCCACAAAGTACAAGTTCAG 58.943 41.667 0.00 0.00 0.00 3.02
16 17 5.031066 AGTAGCCACAAAGTACAAGTTCA 57.969 39.130 0.00 0.00 0.00 3.18
17 18 6.037830 TCAAAGTAGCCACAAAGTACAAGTTC 59.962 38.462 0.00 0.00 0.00 3.01
18 19 5.883673 TCAAAGTAGCCACAAAGTACAAGTT 59.116 36.000 0.00 0.00 0.00 2.66
19 20 5.433526 TCAAAGTAGCCACAAAGTACAAGT 58.566 37.500 0.00 0.00 0.00 3.16
20 21 6.560253 ATCAAAGTAGCCACAAAGTACAAG 57.440 37.500 0.00 0.00 0.00 3.16
21 22 6.952773 AATCAAAGTAGCCACAAAGTACAA 57.047 33.333 0.00 0.00 0.00 2.41
22 23 8.630054 ATTAATCAAAGTAGCCACAAAGTACA 57.370 30.769 0.00 0.00 0.00 2.90
43 44 9.872721 ACATGATGCACACAATCATTTTATTAA 57.127 25.926 0.00 0.00 33.20 1.40
44 45 9.303537 CACATGATGCACACAATCATTTTATTA 57.696 29.630 0.00 0.00 33.20 0.98
45 46 8.035984 TCACATGATGCACACAATCATTTTATT 58.964 29.630 0.00 0.00 33.20 1.40
46 47 7.548967 TCACATGATGCACACAATCATTTTAT 58.451 30.769 0.00 0.00 33.20 1.40
47 48 6.921914 TCACATGATGCACACAATCATTTTA 58.078 32.000 0.00 0.00 33.20 1.52
48 49 5.785243 TCACATGATGCACACAATCATTTT 58.215 33.333 0.00 0.00 33.20 1.82
49 50 5.394224 TCACATGATGCACACAATCATTT 57.606 34.783 0.00 0.00 33.20 2.32
50 51 5.348164 CATCACATGATGCACACAATCATT 58.652 37.500 8.86 0.00 44.44 2.57
51 52 4.932146 CATCACATGATGCACACAATCAT 58.068 39.130 8.86 0.00 44.44 2.45
52 53 4.364415 CATCACATGATGCACACAATCA 57.636 40.909 8.86 0.00 44.44 2.57
63 64 0.549469 TGGCCTCTGCATCACATGAT 59.451 50.000 3.32 0.00 40.13 2.45
64 65 0.107361 CTGGCCTCTGCATCACATGA 60.107 55.000 3.32 0.00 40.13 3.07
65 66 1.101635 CCTGGCCTCTGCATCACATG 61.102 60.000 3.32 0.00 40.13 3.21
66 67 1.226542 CCTGGCCTCTGCATCACAT 59.773 57.895 3.32 0.00 40.13 3.21
67 68 2.672908 CCTGGCCTCTGCATCACA 59.327 61.111 3.32 0.00 40.13 3.58
68 69 1.626356 TACCCTGGCCTCTGCATCAC 61.626 60.000 3.32 0.00 40.13 3.06
69 70 0.913934 TTACCCTGGCCTCTGCATCA 60.914 55.000 3.32 0.00 40.13 3.07
70 71 0.475906 ATTACCCTGGCCTCTGCATC 59.524 55.000 3.32 0.00 40.13 3.91
71 72 0.475906 GATTACCCTGGCCTCTGCAT 59.524 55.000 3.32 0.00 40.13 3.96
72 73 1.635817 GGATTACCCTGGCCTCTGCA 61.636 60.000 3.32 0.00 40.13 4.41
73 74 1.149401 GGATTACCCTGGCCTCTGC 59.851 63.158 3.32 0.00 0.00 4.26
74 75 2.936823 AGGATTACCCTGGCCTCTG 58.063 57.895 3.32 0.00 45.61 3.35
83 84 5.970317 TTTTTCGAAAAGGAGGATTACCC 57.030 39.130 21.53 0.00 36.73 3.69
104 105 8.925338 ACAGGAACGGAGAGAGTATATATTTTT 58.075 33.333 0.00 0.00 0.00 1.94
105 106 8.480133 ACAGGAACGGAGAGAGTATATATTTT 57.520 34.615 0.00 0.00 0.00 1.82
106 107 8.480133 AACAGGAACGGAGAGAGTATATATTT 57.520 34.615 0.00 0.00 0.00 1.40
107 108 7.724506 TGAACAGGAACGGAGAGAGTATATATT 59.275 37.037 0.00 0.00 0.00 1.28
122 123 5.639506 AGATATTGTCAGTTGAACAGGAACG 59.360 40.000 0.00 0.00 0.00 3.95
126 127 7.465111 CGATGAAGATATTGTCAGTTGAACAGG 60.465 40.741 0.00 0.00 0.00 4.00
186 188 9.712305 ATGCATCTATTAGAATAAGTGTACCAC 57.288 33.333 0.00 0.00 34.10 4.16
239 249 6.159293 CAGAGATTAGGTAATTGCGCATCTA 58.841 40.000 12.75 2.31 0.00 1.98
244 254 5.290386 AGTACAGAGATTAGGTAATTGCGC 58.710 41.667 0.00 0.00 0.00 6.09
376 406 8.253113 CCTGTCAAAAGCTACATAATGGAAATT 58.747 33.333 0.00 0.00 0.00 1.82
379 409 6.150976 CACCTGTCAAAAGCTACATAATGGAA 59.849 38.462 0.00 0.00 0.00 3.53
385 415 4.041075 TGGTCACCTGTCAAAAGCTACATA 59.959 41.667 0.00 0.00 0.00 2.29
388 418 2.846193 TGGTCACCTGTCAAAAGCTAC 58.154 47.619 0.00 0.00 0.00 3.58
444 475 2.038557 AGAACCACGAGGCAGTAAACAT 59.961 45.455 0.00 0.00 39.06 2.71
447 478 2.489971 CAAGAACCACGAGGCAGTAAA 58.510 47.619 0.00 0.00 39.06 2.01
451 482 2.328099 GCCAAGAACCACGAGGCAG 61.328 63.158 0.00 0.00 40.90 4.85
458 489 2.935955 CGACACGCCAAGAACCAC 59.064 61.111 0.00 0.00 0.00 4.16
470 501 1.015109 TCATAGAGAGTCGGCGACAC 58.985 55.000 37.71 32.10 34.60 3.67
483 515 9.456147 GCTCAAAGACCTACTATCTATCATAGA 57.544 37.037 0.00 0.00 39.50 1.98
484 516 9.237187 TGCTCAAAGACCTACTATCTATCATAG 57.763 37.037 0.00 0.00 0.00 2.23
485 517 9.015367 GTGCTCAAAGACCTACTATCTATCATA 57.985 37.037 0.00 0.00 0.00 2.15
486 518 7.308891 CGTGCTCAAAGACCTACTATCTATCAT 60.309 40.741 0.00 0.00 0.00 2.45
488 520 6.205076 TCGTGCTCAAAGACCTACTATCTATC 59.795 42.308 0.00 0.00 0.00 2.08
490 522 5.434408 TCGTGCTCAAAGACCTACTATCTA 58.566 41.667 0.00 0.00 0.00 1.98
491 523 4.270834 TCGTGCTCAAAGACCTACTATCT 58.729 43.478 0.00 0.00 0.00 1.98
492 524 4.634184 TCGTGCTCAAAGACCTACTATC 57.366 45.455 0.00 0.00 0.00 2.08
496 528 3.746492 ACAAATCGTGCTCAAAGACCTAC 59.254 43.478 0.00 0.00 0.00 3.18
533 691 8.466798 AGTAAAACAAAGAAGTTAACATGTGCT 58.533 29.630 8.61 0.00 0.00 4.40
545 703 5.296035 ACTCCACCGAAGTAAAACAAAGAAG 59.704 40.000 0.00 0.00 0.00 2.85
548 706 4.261031 CCACTCCACCGAAGTAAAACAAAG 60.261 45.833 0.00 0.00 0.00 2.77
575 733 1.334869 GTGGACAGGCAGTTGACAAAG 59.665 52.381 0.00 0.00 0.00 2.77
576 734 1.064758 AGTGGACAGGCAGTTGACAAA 60.065 47.619 0.00 0.00 0.00 2.83
583 741 1.356124 AGAATCAGTGGACAGGCAGT 58.644 50.000 0.00 0.00 0.00 4.40
588 746 5.121811 CCCATCTTAAGAATCAGTGGACAG 58.878 45.833 19.38 3.86 0.00 3.51
595 753 4.692625 CCATACGCCCATCTTAAGAATCAG 59.307 45.833 9.71 3.33 0.00 2.90
597 755 4.691216 GTCCATACGCCCATCTTAAGAATC 59.309 45.833 9.71 0.00 0.00 2.52
598 756 4.505039 GGTCCATACGCCCATCTTAAGAAT 60.505 45.833 9.71 0.00 0.00 2.40
601 759 2.550208 GGGTCCATACGCCCATCTTAAG 60.550 54.545 0.00 0.00 44.23 1.85
602 760 1.418637 GGGTCCATACGCCCATCTTAA 59.581 52.381 0.00 0.00 44.23 1.85
604 762 1.837090 GGGTCCATACGCCCATCTT 59.163 57.895 0.00 0.00 44.23 2.40
610 806 2.822399 CCAGAGGGTCCATACGCC 59.178 66.667 0.00 0.00 39.30 5.68
626 822 4.568956 AGCCATGTAAAGAAACAATTGCC 58.431 39.130 5.05 0.00 32.02 4.52
627 823 5.695816 TCAAGCCATGTAAAGAAACAATTGC 59.304 36.000 5.05 0.00 32.02 3.56
628 824 6.700960 TGTCAAGCCATGTAAAGAAACAATTG 59.299 34.615 3.24 3.24 32.02 2.32
642 841 3.239587 TGCAATGATTGTCAAGCCATG 57.760 42.857 7.05 0.00 32.67 3.66
646 845 3.482923 CGCAATTGCAATGATTGTCAAGC 60.483 43.478 28.77 13.97 42.21 4.01
673 872 3.297134 TGGCATCTTCTTTACCCATCC 57.703 47.619 0.00 0.00 0.00 3.51
677 876 6.998673 ACATATACTTGGCATCTTCTTTACCC 59.001 38.462 0.00 0.00 0.00 3.69
679 878 7.227512 AGCACATATACTTGGCATCTTCTTTAC 59.772 37.037 0.00 0.00 0.00 2.01
680 879 7.282585 AGCACATATACTTGGCATCTTCTTTA 58.717 34.615 0.00 0.00 0.00 1.85
684 883 8.954950 ATATAGCACATATACTTGGCATCTTC 57.045 34.615 0.00 0.00 0.00 2.87
722 921 4.570772 GTGTTGACAAGTGTAAGAGCTCAA 59.429 41.667 17.77 0.00 0.00 3.02
723 922 4.119862 GTGTTGACAAGTGTAAGAGCTCA 58.880 43.478 17.77 0.00 0.00 4.26
724 923 3.495001 GGTGTTGACAAGTGTAAGAGCTC 59.505 47.826 5.27 5.27 0.00 4.09
735 934 2.487934 CCTCTGTCTGGTGTTGACAAG 58.512 52.381 0.00 0.00 42.85 3.16
741 940 0.037303 CATGGCCTCTGTCTGGTGTT 59.963 55.000 3.32 0.00 0.00 3.32
745 944 2.124403 GCCATGGCCTCTGTCTGG 60.124 66.667 27.24 2.53 34.56 3.86
746 945 2.513204 CGCCATGGCCTCTGTCTG 60.513 66.667 30.79 10.41 37.98 3.51
747 946 4.479993 GCGCCATGGCCTCTGTCT 62.480 66.667 30.79 0.00 37.98 3.41
748 947 4.783621 TGCGCCATGGCCTCTGTC 62.784 66.667 30.79 12.98 37.98 3.51
749 948 4.119363 ATGCGCCATGGCCTCTGT 62.119 61.111 30.79 9.90 37.98 3.41
777 976 1.203758 CATGCACGAGGTGGTGTACTA 59.796 52.381 0.00 0.00 40.08 1.82
791 990 0.173481 TGTAGAGGCGTCTCATGCAC 59.827 55.000 20.97 11.47 42.34 4.57
876 1076 1.134371 GGGAGACGCTTTCTATTGCCT 60.134 52.381 0.00 0.00 33.22 4.75
878 1078 2.205911 GAGGGAGACGCTTTCTATTGC 58.794 52.381 0.00 0.00 33.22 3.56
967 1167 3.127533 GCCGTGCTTCTTGGCGAT 61.128 61.111 0.00 0.00 39.30 4.58
993 1193 3.473647 CGGAGGAGCATGAGGCCA 61.474 66.667 5.01 0.00 46.50 5.36
1126 1326 2.421073 CGACGTCTATCGGCCCATATAA 59.579 50.000 14.70 0.00 46.11 0.98
1265 1465 5.066375 CGCCAGGAATGATGTAATGAGAAAA 59.934 40.000 0.00 0.00 0.00 2.29
1430 1639 7.122650 CCTTATGCCAAGAAAGAAAGGTGATAA 59.877 37.037 0.00 0.00 0.00 1.75
1481 1690 2.430465 CCATCACCAGTCTCACCTTTG 58.570 52.381 0.00 0.00 0.00 2.77
1491 1700 0.178068 GTATCACGGCCATCACCAGT 59.822 55.000 2.24 0.00 0.00 4.00
1562 1771 3.243501 GCACACCATGTCATTCACAAAGT 60.244 43.478 0.00 0.00 38.97 2.66
1731 1940 1.691196 TCACCTTCTTGGCCTTGTTG 58.309 50.000 3.32 0.00 40.22 3.33
1840 2049 3.850752 TGAAGTCACTCTCCTCTTCCTT 58.149 45.455 0.00 0.00 36.47 3.36
1877 2086 0.884704 GTCTTTCTGCTGCCGAACCA 60.885 55.000 5.98 0.00 0.00 3.67
1930 2139 5.105473 GCAGTACTACACTCACCATTAGGAA 60.105 44.000 0.00 0.00 34.26 3.36
1933 2142 5.584253 AGCAGTACTACACTCACCATTAG 57.416 43.478 0.00 0.00 34.26 1.73
1984 2194 8.561738 AAATCTCAAACGGCTTAGATTAGAAA 57.438 30.769 0.00 0.00 37.63 2.52
1985 2195 8.561738 AAAATCTCAAACGGCTTAGATTAGAA 57.438 30.769 0.00 0.00 37.63 2.10
1986 2196 7.280205 GGAAAATCTCAAACGGCTTAGATTAGA 59.720 37.037 0.00 0.00 37.63 2.10
2013 2223 6.727824 AGCACTAAACTGACATTACACATC 57.272 37.500 0.00 0.00 0.00 3.06
2171 2478 4.377839 TTTTCGAGCAAATGTTTCACCA 57.622 36.364 0.00 0.00 0.00 4.17
2226 2536 7.673810 AAACGATTTCCTTAACAACGAAAAG 57.326 32.000 0.00 0.00 0.00 2.27
2229 2541 7.224362 TCAGTAAACGATTTCCTTAACAACGAA 59.776 33.333 0.00 0.00 0.00 3.85
2232 2544 9.968743 CTATCAGTAAACGATTTCCTTAACAAC 57.031 33.333 0.00 0.00 0.00 3.32
2241 2553 7.290857 TGAGCAACTATCAGTAAACGATTTC 57.709 36.000 0.00 0.00 0.00 2.17
2255 2567 2.162681 GCCAACCAACTGAGCAACTAT 58.837 47.619 0.00 0.00 0.00 2.12
2258 2570 1.008538 CGCCAACCAACTGAGCAAC 60.009 57.895 0.00 0.00 0.00 4.17
2259 2571 1.153066 TCGCCAACCAACTGAGCAA 60.153 52.632 0.00 0.00 0.00 3.91
2260 2572 1.597854 CTCGCCAACCAACTGAGCA 60.598 57.895 0.00 0.00 0.00 4.26
2261 2573 0.320421 TACTCGCCAACCAACTGAGC 60.320 55.000 0.00 0.00 0.00 4.26
2271 2583 3.581332 CCTATTAATCCCCTACTCGCCAA 59.419 47.826 0.00 0.00 0.00 4.52
2351 2663 4.163078 ACTCGTAGGGTCACTAAGTAGCTA 59.837 45.833 0.00 0.00 33.54 3.32
2359 2671 1.355381 TCCCAACTCGTAGGGTCACTA 59.645 52.381 0.00 0.00 45.64 2.74
2360 2672 0.113776 TCCCAACTCGTAGGGTCACT 59.886 55.000 0.00 0.00 45.64 3.41
2362 2674 1.946984 AATCCCAACTCGTAGGGTCA 58.053 50.000 0.00 0.00 45.64 4.02
2375 2687 7.573710 ACTAGTTAACATGCTGATTAATCCCA 58.426 34.615 12.90 10.13 0.00 4.37
2386 2698 6.636705 TGTCCGATTAACTAGTTAACATGCT 58.363 36.000 26.34 13.04 37.80 3.79
2390 2702 9.715121 AGAATTTGTCCGATTAACTAGTTAACA 57.285 29.630 26.34 18.42 37.80 2.41
2398 2710 7.504924 TGTTCAAGAATTTGTCCGATTAACT 57.495 32.000 0.00 0.00 35.73 2.24
2406 2718 7.967890 AAAATCCATGTTCAAGAATTTGTCC 57.032 32.000 0.00 0.00 35.73 4.02
2581 2894 7.133133 TGAGTAATACAAGTATTTCTCCCCC 57.867 40.000 24.35 10.64 43.40 5.40
2616 2983 4.398988 AGATTGCAGCCGATGATTGTAAAA 59.601 37.500 0.00 0.00 0.00 1.52
2648 3015 4.968971 ACAATTAATAGGGTCCTACCGG 57.031 45.455 0.00 0.00 39.83 5.28
2911 3279 3.310879 TGGAAAGATGAGGGATGAGGAGA 60.311 47.826 0.00 0.00 0.00 3.71
2991 3359 1.138859 TGATAGCCCATGAGTTCACCG 59.861 52.381 0.00 0.00 0.00 4.94
3157 3525 2.263540 GTCGCCAGCCCGAAGTTA 59.736 61.111 0.00 0.00 39.17 2.24
3207 3575 2.721274 CGATAGCTCCCAGTCATGAG 57.279 55.000 0.00 0.00 0.00 2.90
3231 3599 1.410153 CAATACCCTTCTTGCCCATGC 59.590 52.381 0.00 0.00 38.26 4.06
3321 3689 5.217393 GTGAGACGTACAATCACACACTTA 58.783 41.667 15.41 0.00 42.30 2.24
3333 3701 4.217767 AGCAAGAGTTATGTGAGACGTACA 59.782 41.667 0.00 0.00 0.00 2.90
3423 3791 7.280876 CACGAATATAGCCCTTACATATGCAAT 59.719 37.037 1.58 0.00 0.00 3.56
3433 3801 7.758076 CGATTCAATACACGAATATAGCCCTTA 59.242 37.037 0.00 0.00 33.26 2.69
3459 3879 3.698029 ACACAATCTTGCATATTCCGC 57.302 42.857 0.00 0.00 0.00 5.54
3502 3922 7.416551 GGGTGTATACTCTTGTACTTTCTCTCC 60.417 44.444 4.17 0.00 0.00 3.71
3538 3958 0.597118 CGAGCTATGCCTCTCTGTGC 60.597 60.000 0.00 0.00 0.00 4.57
3550 3970 1.134670 GCTCAAACCAGACCGAGCTAT 60.135 52.381 0.00 0.00 45.86 2.97
3552 3972 1.004440 GCTCAAACCAGACCGAGCT 60.004 57.895 0.00 0.00 45.86 4.09
3973 4393 3.054878 GGGATACGTTAAGCACCGTATG 58.945 50.000 12.06 0.00 46.82 2.39
3975 4395 1.065401 CGGGATACGTTAAGCACCGTA 59.935 52.381 0.00 0.00 42.95 4.02
3976 4396 0.179129 CGGGATACGTTAAGCACCGT 60.179 55.000 0.00 0.00 40.87 4.83
3977 4397 1.485032 GCGGGATACGTTAAGCACCG 61.485 60.000 0.00 1.04 46.52 4.94
3978 4398 1.156034 GGCGGGATACGTTAAGCACC 61.156 60.000 0.00 0.00 46.52 5.01
3979 4399 1.485032 CGGCGGGATACGTTAAGCAC 61.485 60.000 0.00 0.00 46.52 4.40
3980 4400 1.227031 CGGCGGGATACGTTAAGCA 60.227 57.895 0.00 0.00 46.52 3.91
3981 4401 0.030638 TACGGCGGGATACGTTAAGC 59.969 55.000 13.24 0.00 46.52 3.09
3982 4402 2.322161 CATACGGCGGGATACGTTAAG 58.678 52.381 13.24 0.00 46.52 1.85
3983 4403 1.602668 GCATACGGCGGGATACGTTAA 60.603 52.381 13.24 0.00 46.52 2.01
3984 4404 0.039256 GCATACGGCGGGATACGTTA 60.039 55.000 13.24 0.00 46.52 3.18
3985 4405 1.300388 GCATACGGCGGGATACGTT 60.300 57.895 13.24 0.00 46.52 3.99
3986 4406 2.337532 GCATACGGCGGGATACGT 59.662 61.111 13.24 0.00 46.52 3.57
3998 4418 2.280524 TATGGGCACGCCGCATAC 60.281 61.111 12.48 0.00 44.36 2.39
3999 4419 2.280524 GTATGGGCACGCCGCATA 60.281 61.111 12.48 12.48 44.36 3.14
4003 4423 2.971428 CTACCTGTATGGGCACGCCG 62.971 65.000 1.14 0.00 41.11 6.46
4004 4424 1.227556 CTACCTGTATGGGCACGCC 60.228 63.158 0.00 0.00 41.11 5.68
4005 4425 0.249489 CTCTACCTGTATGGGCACGC 60.249 60.000 0.00 0.00 41.11 5.34
4006 4426 0.249489 GCTCTACCTGTATGGGCACG 60.249 60.000 0.00 0.00 41.11 5.34
4007 4427 0.106894 GGCTCTACCTGTATGGGCAC 59.893 60.000 0.00 0.00 41.11 5.01
4008 4428 1.399744 CGGCTCTACCTGTATGGGCA 61.400 60.000 0.00 0.00 41.11 5.36
4009 4429 1.113517 TCGGCTCTACCTGTATGGGC 61.114 60.000 0.00 0.00 41.11 5.36
4010 4430 0.962489 CTCGGCTCTACCTGTATGGG 59.038 60.000 0.00 0.00 41.11 4.00
4011 4431 0.315568 GCTCGGCTCTACCTGTATGG 59.684 60.000 0.00 0.00 42.93 2.74
4012 4432 0.039978 CGCTCGGCTCTACCTGTATG 60.040 60.000 0.00 0.00 35.61 2.39
4013 4433 1.797211 GCGCTCGGCTCTACCTGTAT 61.797 60.000 0.00 0.00 39.11 2.29
4014 4434 2.478890 GCGCTCGGCTCTACCTGTA 61.479 63.158 0.00 0.00 39.11 2.74
4015 4435 3.827898 GCGCTCGGCTCTACCTGT 61.828 66.667 0.00 0.00 39.11 4.00
4016 4436 3.826754 TGCGCTCGGCTCTACCTG 61.827 66.667 9.73 0.00 44.05 4.00
4017 4437 3.827898 GTGCGCTCGGCTCTACCT 61.828 66.667 9.73 0.00 44.05 3.08
4045 4465 4.664677 ATGCGAGCCGGCCGTATC 62.665 66.667 29.37 19.79 0.00 2.24
4046 4466 4.969196 CATGCGAGCCGGCCGTAT 62.969 66.667 29.37 27.82 32.83 3.06
4051 4471 4.530857 AGGTACATGCGAGCCGGC 62.531 66.667 21.89 21.89 0.00 6.13
4052 4472 2.279517 GAGGTACATGCGAGCCGG 60.280 66.667 0.00 0.00 0.00 6.13
4053 4473 2.279517 GGAGGTACATGCGAGCCG 60.280 66.667 0.00 0.00 0.00 5.52
4054 4474 1.068250 GAGGAGGTACATGCGAGCC 59.932 63.158 0.00 0.00 0.00 4.70
4055 4475 1.068250 GGAGGAGGTACATGCGAGC 59.932 63.158 0.00 0.00 0.00 5.03
4056 4476 1.742768 GGGAGGAGGTACATGCGAG 59.257 63.158 0.00 0.00 0.00 5.03
4057 4477 2.125326 CGGGAGGAGGTACATGCGA 61.125 63.158 0.00 0.00 0.00 5.10
4058 4478 2.351336 GACGGGAGGAGGTACATGCG 62.351 65.000 0.00 0.00 0.00 4.73
4059 4479 1.442148 GACGGGAGGAGGTACATGC 59.558 63.158 0.00 0.00 0.00 4.06
4060 4480 1.734137 CGACGGGAGGAGGTACATG 59.266 63.158 0.00 0.00 0.00 3.21
4061 4481 2.125961 GCGACGGGAGGAGGTACAT 61.126 63.158 0.00 0.00 0.00 2.29
4062 4482 2.753043 GCGACGGGAGGAGGTACA 60.753 66.667 0.00 0.00 0.00 2.90
4063 4483 3.885521 CGCGACGGGAGGAGGTAC 61.886 72.222 0.00 0.00 0.00 3.34
4086 4506 2.227194 CGCTAGGTTGTGGGTCTTTTT 58.773 47.619 0.00 0.00 0.00 1.94
4087 4507 1.142262 ACGCTAGGTTGTGGGTCTTTT 59.858 47.619 0.00 0.00 0.00 2.27
4088 4508 0.763035 ACGCTAGGTTGTGGGTCTTT 59.237 50.000 0.00 0.00 0.00 2.52
4089 4509 0.763035 AACGCTAGGTTGTGGGTCTT 59.237 50.000 0.00 0.00 37.50 3.01
4090 4510 2.448749 AACGCTAGGTTGTGGGTCT 58.551 52.632 0.00 0.00 37.50 3.85
4106 4526 0.247814 CAATGAGCCGCGTGATCAAC 60.248 55.000 17.08 0.00 0.00 3.18
4107 4527 1.980951 GCAATGAGCCGCGTGATCAA 61.981 55.000 17.08 4.23 37.23 2.57
4108 4528 2.463620 GCAATGAGCCGCGTGATCA 61.464 57.895 15.84 15.84 37.23 2.92
4109 4529 1.980951 TTGCAATGAGCCGCGTGATC 61.981 55.000 4.92 5.57 44.83 2.92
4110 4530 2.039974 TTGCAATGAGCCGCGTGAT 61.040 52.632 4.92 0.00 44.83 3.06
4111 4531 2.667874 TTGCAATGAGCCGCGTGA 60.668 55.556 4.92 0.00 44.83 4.35
4112 4532 2.502510 GTTGCAATGAGCCGCGTG 60.503 61.111 0.59 0.00 44.83 5.34
4113 4533 4.088762 CGTTGCAATGAGCCGCGT 62.089 61.111 13.63 0.00 44.83 6.01
4114 4534 3.982424 GACGTTGCAATGAGCCGCG 62.982 63.158 25.13 13.29 44.83 6.46
4115 4535 2.202349 GACGTTGCAATGAGCCGC 60.202 61.111 25.13 5.53 44.83 6.53
4116 4536 2.096406 CGACGTTGCAATGAGCCG 59.904 61.111 25.13 18.76 44.83 5.52
4117 4537 2.202349 GCGACGTTGCAATGAGCC 60.202 61.111 25.13 11.94 44.83 4.70
4118 4538 2.202349 GGCGACGTTGCAATGAGC 60.202 61.111 28.27 24.94 45.96 4.26
4119 4539 2.480555 GGGCGACGTTGCAATGAG 59.519 61.111 28.27 17.75 36.28 2.90
4120 4540 3.053291 GGGGCGACGTTGCAATGA 61.053 61.111 28.27 0.00 36.28 2.57
4121 4541 2.597117 GATGGGGCGACGTTGCAATG 62.597 60.000 28.27 17.16 36.28 2.82
4122 4542 2.361104 ATGGGGCGACGTTGCAAT 60.361 55.556 28.27 15.67 36.28 3.56
4123 4543 3.053291 GATGGGGCGACGTTGCAA 61.053 61.111 28.27 14.08 36.28 4.08
4173 4593 2.717139 CTAGATCGGCGGGGAAAGGC 62.717 65.000 7.21 0.00 0.00 4.35
4174 4594 1.367840 CTAGATCGGCGGGGAAAGG 59.632 63.158 7.21 0.00 0.00 3.11
4175 4595 1.301009 GCTAGATCGGCGGGGAAAG 60.301 63.158 7.21 0.00 0.00 2.62
4176 4596 1.760875 AGCTAGATCGGCGGGGAAA 60.761 57.895 7.21 0.00 34.52 3.13
4177 4597 2.123425 AGCTAGATCGGCGGGGAA 60.123 61.111 7.21 0.00 34.52 3.97
4178 4598 2.912542 CAGCTAGATCGGCGGGGA 60.913 66.667 7.21 0.00 34.52 4.81
4179 4599 4.671569 GCAGCTAGATCGGCGGGG 62.672 72.222 7.21 7.12 34.52 5.73
4183 4603 1.006314 GTGATCGCAGCTAGATCGGC 61.006 60.000 19.94 14.12 45.44 5.54
4184 4604 0.727457 CGTGATCGCAGCTAGATCGG 60.727 60.000 19.94 13.56 45.44 4.18
4185 4605 2.705974 CGTGATCGCAGCTAGATCG 58.294 57.895 19.94 10.64 45.44 3.69
4196 4616 1.353103 GGAATTGGCAGCGTGATCG 59.647 57.895 0.00 0.00 40.37 3.69
4197 4617 0.810648 TTGGAATTGGCAGCGTGATC 59.189 50.000 0.00 0.00 0.00 2.92
4198 4618 0.527565 GTTGGAATTGGCAGCGTGAT 59.472 50.000 0.00 0.00 0.00 3.06
4199 4619 1.851021 CGTTGGAATTGGCAGCGTGA 61.851 55.000 0.00 0.00 0.00 4.35
4200 4620 1.442520 CGTTGGAATTGGCAGCGTG 60.443 57.895 0.00 0.00 0.00 5.34
4201 4621 1.852067 GACGTTGGAATTGGCAGCGT 61.852 55.000 0.00 0.00 38.38 5.07
4202 4622 1.154225 GACGTTGGAATTGGCAGCG 60.154 57.895 0.00 0.00 0.00 5.18
4203 4623 0.598065 AAGACGTTGGAATTGGCAGC 59.402 50.000 0.00 0.00 0.00 5.25
4204 4624 1.200020 GGAAGACGTTGGAATTGGCAG 59.800 52.381 0.00 0.00 0.00 4.85
4205 4625 1.243902 GGAAGACGTTGGAATTGGCA 58.756 50.000 0.00 0.00 0.00 4.92
4206 4626 0.526211 GGGAAGACGTTGGAATTGGC 59.474 55.000 0.00 0.00 0.00 4.52
4207 4627 0.802494 CGGGAAGACGTTGGAATTGG 59.198 55.000 0.00 0.00 0.00 3.16
4208 4628 1.519408 ACGGGAAGACGTTGGAATTG 58.481 50.000 0.00 0.00 46.25 2.32
4239 4659 4.109675 ATCGGTGGGGAAAGGCGG 62.110 66.667 0.00 0.00 0.00 6.13
4240 4660 2.513897 GATCGGTGGGGAAAGGCG 60.514 66.667 0.00 0.00 0.00 5.52
4241 4661 2.513897 CGATCGGTGGGGAAAGGC 60.514 66.667 7.38 0.00 0.00 4.35
4242 4662 2.513897 GCGATCGGTGGGGAAAGG 60.514 66.667 18.30 0.00 0.00 3.11
4243 4663 2.513897 GGCGATCGGTGGGGAAAG 60.514 66.667 18.30 0.00 0.00 2.62
4244 4664 4.460683 CGGCGATCGGTGGGGAAA 62.461 66.667 18.30 0.00 34.75 3.13
4249 4669 3.733344 AATGGTCGGCGATCGGTGG 62.733 63.158 14.79 0.00 39.77 4.61
4250 4670 2.202878 AATGGTCGGCGATCGGTG 60.203 61.111 14.79 0.00 39.77 4.94
4251 4671 2.106332 GAATGGTCGGCGATCGGT 59.894 61.111 14.79 3.47 39.77 4.69
4252 4672 1.661821 GAGAATGGTCGGCGATCGG 60.662 63.158 14.79 0.48 39.77 4.18
4253 4673 1.661821 GGAGAATGGTCGGCGATCG 60.662 63.158 14.79 11.69 40.90 3.69
4254 4674 1.301009 GGGAGAATGGTCGGCGATC 60.301 63.158 14.79 14.58 0.00 3.69
4255 4675 1.762460 AGGGAGAATGGTCGGCGAT 60.762 57.895 14.79 0.00 0.00 4.58
4256 4676 2.363795 AGGGAGAATGGTCGGCGA 60.364 61.111 4.99 4.99 0.00 5.54
4257 4677 2.202932 CAGGGAGAATGGTCGGCG 60.203 66.667 0.00 0.00 0.00 6.46
4258 4678 1.153349 GACAGGGAGAATGGTCGGC 60.153 63.158 0.00 0.00 0.00 5.54
4259 4679 0.905357 AAGACAGGGAGAATGGTCGG 59.095 55.000 0.00 0.00 35.49 4.79
4260 4680 1.550524 TCAAGACAGGGAGAATGGTCG 59.449 52.381 0.00 0.00 35.49 4.79
4261 4681 2.355209 GGTCAAGACAGGGAGAATGGTC 60.355 54.545 2.29 0.00 0.00 4.02
4262 4682 1.630878 GGTCAAGACAGGGAGAATGGT 59.369 52.381 2.29 0.00 0.00 3.55
4263 4683 1.065126 GGGTCAAGACAGGGAGAATGG 60.065 57.143 2.29 0.00 0.00 3.16
4264 4684 1.406069 CGGGTCAAGACAGGGAGAATG 60.406 57.143 2.29 0.00 0.00 2.67
4265 4685 0.905357 CGGGTCAAGACAGGGAGAAT 59.095 55.000 2.29 0.00 0.00 2.40
4266 4686 1.192146 CCGGGTCAAGACAGGGAGAA 61.192 60.000 0.00 0.00 0.00 2.87
4267 4687 1.609501 CCGGGTCAAGACAGGGAGA 60.610 63.158 0.00 0.00 0.00 3.71
4268 4688 2.660064 CCCGGGTCAAGACAGGGAG 61.660 68.421 21.23 5.48 46.80 4.30
4269 4689 2.606519 CCCGGGTCAAGACAGGGA 60.607 66.667 21.23 0.00 46.80 4.20
4270 4690 1.972660 GATCCCGGGTCAAGACAGGG 61.973 65.000 22.86 20.30 45.89 4.45
4271 4691 0.978146 AGATCCCGGGTCAAGACAGG 60.978 60.000 22.86 4.96 0.00 4.00
4272 4692 0.176680 CAGATCCCGGGTCAAGACAG 59.823 60.000 22.86 0.00 0.00 3.51
4273 4693 1.264749 CCAGATCCCGGGTCAAGACA 61.265 60.000 22.86 0.00 0.00 3.41
4274 4694 1.522569 CCAGATCCCGGGTCAAGAC 59.477 63.158 22.86 6.79 0.00 3.01
4275 4695 2.367202 GCCAGATCCCGGGTCAAGA 61.367 63.158 22.86 0.00 0.00 3.02
4276 4696 2.190578 GCCAGATCCCGGGTCAAG 59.809 66.667 22.86 13.05 0.00 3.02
4277 4697 3.407967 GGCCAGATCCCGGGTCAA 61.408 66.667 22.86 0.06 32.25 3.18
4294 4714 4.007940 CCAACAACGTCCGTGGCG 62.008 66.667 0.00 0.00 0.00 5.69
4295 4715 2.589442 TCCAACAACGTCCGTGGC 60.589 61.111 6.50 0.00 0.00 5.01
4296 4716 0.812412 AACTCCAACAACGTCCGTGG 60.812 55.000 5.25 5.25 0.00 4.94
4297 4717 0.303493 CAACTCCAACAACGTCCGTG 59.697 55.000 0.00 0.00 0.00 4.94
4298 4718 1.433837 GCAACTCCAACAACGTCCGT 61.434 55.000 0.00 0.00 0.00 4.69
4299 4719 1.278637 GCAACTCCAACAACGTCCG 59.721 57.895 0.00 0.00 0.00 4.79
4300 4720 1.652563 GGCAACTCCAACAACGTCC 59.347 57.895 0.00 0.00 34.01 4.79
4301 4721 1.278637 CGGCAACTCCAACAACGTC 59.721 57.895 0.00 0.00 34.01 4.34
4302 4722 2.830285 GCGGCAACTCCAACAACGT 61.830 57.895 0.00 0.00 34.01 3.99
4303 4723 2.051345 GCGGCAACTCCAACAACG 60.051 61.111 0.00 0.00 34.01 4.10
4304 4724 2.335011 GGCGGCAACTCCAACAAC 59.665 61.111 3.07 0.00 42.67 3.32
4305 4725 2.661840 TACGGCGGCAACTCCAACAA 62.662 55.000 13.24 0.00 43.61 2.83
4306 4726 3.166490 TACGGCGGCAACTCCAACA 62.166 57.895 13.24 0.00 43.61 3.33
4307 4727 2.357760 TACGGCGGCAACTCCAAC 60.358 61.111 13.24 0.00 43.61 3.77
4308 4728 2.357760 GTACGGCGGCAACTCCAA 60.358 61.111 13.24 0.00 43.61 3.53
4309 4729 4.728102 CGTACGGCGGCAACTCCA 62.728 66.667 13.24 0.00 43.61 3.86
4319 4739 4.232248 GGCCAAATCGCGTACGGC 62.232 66.667 18.39 18.63 42.21 5.68
4320 4740 2.510691 AGGCCAAATCGCGTACGG 60.511 61.111 18.39 7.41 40.63 4.02
4321 4741 2.522638 GGAGGCCAAATCGCGTACG 61.523 63.158 11.84 11.84 42.01 3.67
4322 4742 2.522638 CGGAGGCCAAATCGCGTAC 61.523 63.158 5.01 0.00 0.00 3.67
4323 4743 2.202824 CGGAGGCCAAATCGCGTA 60.203 61.111 5.01 0.00 0.00 4.42
4324 4744 4.388499 ACGGAGGCCAAATCGCGT 62.388 61.111 5.01 3.39 0.00 6.01
4325 4745 3.864686 CACGGAGGCCAAATCGCG 61.865 66.667 5.01 0.00 0.00 5.87
4326 4746 4.179579 GCACGGAGGCCAAATCGC 62.180 66.667 5.01 0.00 0.00 4.58
4327 4747 2.745884 TGCACGGAGGCCAAATCG 60.746 61.111 5.01 5.44 0.00 3.34
4328 4748 2.409870 CCTGCACGGAGGCCAAATC 61.410 63.158 5.01 0.00 33.16 2.17
4329 4749 2.361610 CCTGCACGGAGGCCAAAT 60.362 61.111 5.01 0.00 33.16 2.32
4330 4750 3.842925 GACCTGCACGGAGGCCAAA 62.843 63.158 5.01 0.00 36.46 3.28
4331 4751 4.329545 GACCTGCACGGAGGCCAA 62.330 66.667 5.01 0.00 36.46 4.52
4335 4755 4.778415 CGACGACCTGCACGGAGG 62.778 72.222 2.62 2.62 39.28 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.