Multiple sequence alignment - TraesCS2D01G147000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2D01G147000 chr2D 100.000 2624 0 0 1 2624 88054343 88056966 0.000000e+00 4846
1 TraesCS2D01G147000 chr2D 79.269 1259 223 27 773 2009 509383944 509385186 0.000000e+00 845
2 TraesCS2D01G147000 chr2D 95.671 231 10 0 705 935 88078063 88078293 3.190000e-99 372
3 TraesCS2D01G147000 chr4A 93.622 1364 78 5 703 2063 603747787 603746430 0.000000e+00 2028
4 TraesCS2D01G147000 chr4A 93.402 1364 81 5 703 2063 603817706 603816349 0.000000e+00 2012
5 TraesCS2D01G147000 chr4A 93.590 234 11 3 705 936 603742688 603742457 1.930000e-91 346
6 TraesCS2D01G147000 chr4A 93.590 234 11 3 705 936 603812620 603812389 1.930000e-91 346
7 TraesCS2D01G147000 chr4A 86.275 306 41 1 705 1010 599626157 599625853 5.410000e-87 331
8 TraesCS2D01G147000 chr2A 93.235 1360 75 7 705 2063 761797459 761798802 0.000000e+00 1986
9 TraesCS2D01G147000 chr2A 90.973 565 42 7 2064 2624 661101876 661101317 0.000000e+00 752
10 TraesCS2D01G147000 chr6B 86.599 1373 151 19 715 2061 615078940 615080305 0.000000e+00 1485
11 TraesCS2D01G147000 chr6B 87.135 171 17 2 705 875 615083801 615083966 3.450000e-44 189
12 TraesCS2D01G147000 chr2B 88.131 1011 91 14 707 1696 253731357 253730355 0.000000e+00 1175
13 TraesCS2D01G147000 chr2B 92.212 565 41 3 2062 2624 134300553 134299990 0.000000e+00 797
14 TraesCS2D01G147000 chr1B 93.982 565 31 3 2062 2624 147140335 147139772 0.000000e+00 852
15 TraesCS2D01G147000 chr1B 91.504 565 41 4 2062 2624 576249564 576249005 0.000000e+00 771
16 TraesCS2D01G147000 chr6D 89.521 668 40 14 705 1347 457709486 457708824 0.000000e+00 819
17 TraesCS2D01G147000 chr6D 92.641 231 17 0 705 935 457706832 457706602 1.510000e-87 333
18 TraesCS2D01G147000 chr5A 92.945 567 32 4 2062 2624 366280466 366281028 0.000000e+00 819
19 TraesCS2D01G147000 chr5A 93.644 236 12 2 702 936 671981911 671982144 1.490000e-92 350
20 TraesCS2D01G147000 chr5B 90.861 569 43 9 2062 2624 168636 169201 0.000000e+00 754
21 TraesCS2D01G147000 chr5B 90.265 565 47 8 2064 2624 241939739 241940299 0.000000e+00 732
22 TraesCS2D01G147000 chr5B 90.088 565 42 13 2064 2622 440411906 440411350 0.000000e+00 721
23 TraesCS2D01G147000 chrUn 82.200 882 141 11 1191 2061 94341602 94340726 0.000000e+00 745
24 TraesCS2D01G147000 chrUn 82.086 882 142 11 1191 2061 94328910 94328034 0.000000e+00 739
25 TraesCS2D01G147000 chrUn 82.127 884 133 15 1191 2061 94452774 94451903 0.000000e+00 734
26 TraesCS2D01G147000 chrUn 83.956 723 105 8 1191 1906 94370638 94369920 0.000000e+00 682
27 TraesCS2D01G147000 chrUn 89.306 533 41 5 1531 2063 347926646 347926130 0.000000e+00 654
28 TraesCS2D01G147000 chrUn 86.275 306 41 1 705 1010 47344571 47344267 5.410000e-87 331
29 TraesCS2D01G147000 chr3A 90.071 564 46 10 2064 2623 522749582 522749025 0.000000e+00 723


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2D01G147000 chr2D 88054343 88056966 2623 False 4846 4846 100.000 1 2624 1 chr2D.!!$F1 2623
1 TraesCS2D01G147000 chr2D 509383944 509385186 1242 False 845 845 79.269 773 2009 1 chr2D.!!$F3 1236
2 TraesCS2D01G147000 chr4A 603742457 603747787 5330 True 1187 2028 93.606 703 2063 2 chr4A.!!$R2 1360
3 TraesCS2D01G147000 chr4A 603812389 603817706 5317 True 1179 2012 93.496 703 2063 2 chr4A.!!$R3 1360
4 TraesCS2D01G147000 chr2A 761797459 761798802 1343 False 1986 1986 93.235 705 2063 1 chr2A.!!$F1 1358
5 TraesCS2D01G147000 chr2A 661101317 661101876 559 True 752 752 90.973 2064 2624 1 chr2A.!!$R1 560
6 TraesCS2D01G147000 chr6B 615078940 615083966 5026 False 837 1485 86.867 705 2061 2 chr6B.!!$F1 1356
7 TraesCS2D01G147000 chr2B 253730355 253731357 1002 True 1175 1175 88.131 707 1696 1 chr2B.!!$R2 989
8 TraesCS2D01G147000 chr2B 134299990 134300553 563 True 797 797 92.212 2062 2624 1 chr2B.!!$R1 562
9 TraesCS2D01G147000 chr1B 147139772 147140335 563 True 852 852 93.982 2062 2624 1 chr1B.!!$R1 562
10 TraesCS2D01G147000 chr1B 576249005 576249564 559 True 771 771 91.504 2062 2624 1 chr1B.!!$R2 562
11 TraesCS2D01G147000 chr6D 457706602 457709486 2884 True 576 819 91.081 705 1347 2 chr6D.!!$R1 642
12 TraesCS2D01G147000 chr5A 366280466 366281028 562 False 819 819 92.945 2062 2624 1 chr5A.!!$F1 562
13 TraesCS2D01G147000 chr5B 168636 169201 565 False 754 754 90.861 2062 2624 1 chr5B.!!$F1 562
14 TraesCS2D01G147000 chr5B 241939739 241940299 560 False 732 732 90.265 2064 2624 1 chr5B.!!$F2 560
15 TraesCS2D01G147000 chr5B 440411350 440411906 556 True 721 721 90.088 2064 2622 1 chr5B.!!$R1 558
16 TraesCS2D01G147000 chrUn 94340726 94341602 876 True 745 745 82.200 1191 2061 1 chrUn.!!$R3 870
17 TraesCS2D01G147000 chrUn 94328034 94328910 876 True 739 739 82.086 1191 2061 1 chrUn.!!$R2 870
18 TraesCS2D01G147000 chrUn 94451903 94452774 871 True 734 734 82.127 1191 2061 1 chrUn.!!$R5 870
19 TraesCS2D01G147000 chrUn 94369920 94370638 718 True 682 682 83.956 1191 1906 1 chrUn.!!$R4 715
20 TraesCS2D01G147000 chrUn 347926130 347926646 516 True 654 654 89.306 1531 2063 1 chrUn.!!$R6 532
21 TraesCS2D01G147000 chr3A 522749025 522749582 557 True 723 723 90.071 2064 2623 1 chr3A.!!$R1 559

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
88 89 0.031917 TGATCCCCTAGCGGTGGTAA 60.032 55.0 0.0 0.0 0.0 2.85 F
539 540 0.036765 TGGACGTTGCGAGGCTATTT 60.037 50.0 0.0 0.0 0.0 1.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1406 1447 0.391661 GAGCTCTGGCGAAATGGTGA 60.392 55.0 6.43 0.0 44.37 4.02 R
2073 2208 0.693092 CCGAGGACCCCCTAATCCAA 60.693 60.0 0.00 0.0 44.53 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.702093 CCACAAGTCCCTCCCATCT 58.298 57.895 0.00 0.00 0.00 2.90
19 20 1.879575 CCACAAGTCCCTCCCATCTA 58.120 55.000 0.00 0.00 0.00 1.98
20 21 2.412591 CCACAAGTCCCTCCCATCTAT 58.587 52.381 0.00 0.00 0.00 1.98
21 22 2.105477 CCACAAGTCCCTCCCATCTATG 59.895 54.545 0.00 0.00 0.00 2.23
22 23 3.041211 CACAAGTCCCTCCCATCTATGA 58.959 50.000 0.00 0.00 0.00 2.15
23 24 3.649981 CACAAGTCCCTCCCATCTATGAT 59.350 47.826 0.00 0.00 0.00 2.45
24 25 3.906846 ACAAGTCCCTCCCATCTATGATC 59.093 47.826 0.00 0.00 0.00 2.92
25 26 3.197927 AGTCCCTCCCATCTATGATCC 57.802 52.381 0.00 0.00 0.00 3.36
26 27 2.456340 AGTCCCTCCCATCTATGATCCA 59.544 50.000 0.00 0.00 0.00 3.41
27 28 2.569404 GTCCCTCCCATCTATGATCCAC 59.431 54.545 0.00 0.00 0.00 4.02
28 29 2.456340 TCCCTCCCATCTATGATCCACT 59.544 50.000 0.00 0.00 0.00 4.00
29 30 2.570752 CCCTCCCATCTATGATCCACTG 59.429 54.545 0.00 0.00 0.00 3.66
30 31 2.570752 CCTCCCATCTATGATCCACTGG 59.429 54.545 0.00 0.00 0.00 4.00
31 32 1.980765 TCCCATCTATGATCCACTGGC 59.019 52.381 0.00 0.00 0.00 4.85
32 33 1.004044 CCCATCTATGATCCACTGGCC 59.996 57.143 0.00 0.00 0.00 5.36
33 34 1.338484 CCATCTATGATCCACTGGCCG 60.338 57.143 0.00 0.00 0.00 6.13
34 35 0.322975 ATCTATGATCCACTGGCCGC 59.677 55.000 0.00 0.00 0.00 6.53
35 36 1.302033 CTATGATCCACTGGCCGCC 60.302 63.158 1.04 1.04 0.00 6.13
36 37 2.043604 CTATGATCCACTGGCCGCCA 62.044 60.000 12.67 12.67 0.00 5.69
37 38 2.324014 TATGATCCACTGGCCGCCAC 62.324 60.000 8.43 0.00 0.00 5.01
56 57 2.990967 CCCGCCACTGCCACAATT 60.991 61.111 0.00 0.00 0.00 2.32
57 58 2.568090 CCGCCACTGCCACAATTC 59.432 61.111 0.00 0.00 0.00 2.17
58 59 2.568090 CGCCACTGCCACAATTCC 59.432 61.111 0.00 0.00 0.00 3.01
59 60 2.973082 GCCACTGCCACAATTCCC 59.027 61.111 0.00 0.00 0.00 3.97
60 61 1.607467 GCCACTGCCACAATTCCCT 60.607 57.895 0.00 0.00 0.00 4.20
61 62 1.598701 GCCACTGCCACAATTCCCTC 61.599 60.000 0.00 0.00 0.00 4.30
62 63 0.967380 CCACTGCCACAATTCCCTCC 60.967 60.000 0.00 0.00 0.00 4.30
63 64 0.967380 CACTGCCACAATTCCCTCCC 60.967 60.000 0.00 0.00 0.00 4.30
64 65 1.383799 CTGCCACAATTCCCTCCCA 59.616 57.895 0.00 0.00 0.00 4.37
65 66 0.032813 CTGCCACAATTCCCTCCCAT 60.033 55.000 0.00 0.00 0.00 4.00
66 67 0.033208 TGCCACAATTCCCTCCCATC 60.033 55.000 0.00 0.00 0.00 3.51
67 68 0.756815 GCCACAATTCCCTCCCATCC 60.757 60.000 0.00 0.00 0.00 3.51
68 69 0.466189 CCACAATTCCCTCCCATCCG 60.466 60.000 0.00 0.00 0.00 4.18
69 70 0.255890 CACAATTCCCTCCCATCCGT 59.744 55.000 0.00 0.00 0.00 4.69
70 71 0.255890 ACAATTCCCTCCCATCCGTG 59.744 55.000 0.00 0.00 0.00 4.94
71 72 0.546122 CAATTCCCTCCCATCCGTGA 59.454 55.000 0.00 0.00 0.00 4.35
72 73 1.143684 CAATTCCCTCCCATCCGTGAT 59.856 52.381 0.00 0.00 0.00 3.06
73 74 1.059913 ATTCCCTCCCATCCGTGATC 58.940 55.000 0.00 0.00 0.00 2.92
74 75 1.054406 TTCCCTCCCATCCGTGATCC 61.054 60.000 0.00 0.00 0.00 3.36
75 76 2.520536 CCCTCCCATCCGTGATCCC 61.521 68.421 0.00 0.00 0.00 3.85
76 77 2.520536 CCTCCCATCCGTGATCCCC 61.521 68.421 0.00 0.00 0.00 4.81
77 78 1.460305 CTCCCATCCGTGATCCCCT 60.460 63.158 0.00 0.00 0.00 4.79
78 79 0.178932 CTCCCATCCGTGATCCCCTA 60.179 60.000 0.00 0.00 0.00 3.53
79 80 0.178932 TCCCATCCGTGATCCCCTAG 60.179 60.000 0.00 0.00 0.00 3.02
80 81 1.674057 CCATCCGTGATCCCCTAGC 59.326 63.158 0.00 0.00 0.00 3.42
81 82 1.290324 CATCCGTGATCCCCTAGCG 59.710 63.158 0.00 0.00 0.00 4.26
82 83 1.908793 ATCCGTGATCCCCTAGCGG 60.909 63.158 0.00 0.00 43.32 5.52
83 84 2.658321 ATCCGTGATCCCCTAGCGGT 62.658 60.000 0.00 0.00 42.62 5.68
84 85 2.417516 CGTGATCCCCTAGCGGTG 59.582 66.667 0.00 0.00 0.00 4.94
85 86 2.822399 GTGATCCCCTAGCGGTGG 59.178 66.667 0.00 0.00 0.00 4.61
86 87 2.064581 GTGATCCCCTAGCGGTGGT 61.065 63.158 0.00 0.00 0.00 4.16
87 88 0.757935 GTGATCCCCTAGCGGTGGTA 60.758 60.000 0.00 0.00 0.00 3.25
88 89 0.031917 TGATCCCCTAGCGGTGGTAA 60.032 55.000 0.00 0.00 0.00 2.85
89 90 0.391966 GATCCCCTAGCGGTGGTAAC 59.608 60.000 0.00 0.00 0.00 2.50
127 128 3.443045 GGCTGTCAATGGCGGTGG 61.443 66.667 0.00 0.00 0.00 4.61
128 129 3.443045 GCTGTCAATGGCGGTGGG 61.443 66.667 0.00 0.00 0.00 4.61
129 130 2.034066 CTGTCAATGGCGGTGGGT 59.966 61.111 0.00 0.00 0.00 4.51
130 131 1.603455 CTGTCAATGGCGGTGGGTT 60.603 57.895 0.00 0.00 0.00 4.11
131 132 1.152652 TGTCAATGGCGGTGGGTTT 60.153 52.632 0.00 0.00 0.00 3.27
132 133 0.110678 TGTCAATGGCGGTGGGTTTA 59.889 50.000 0.00 0.00 0.00 2.01
133 134 0.808755 GTCAATGGCGGTGGGTTTAG 59.191 55.000 0.00 0.00 0.00 1.85
134 135 0.402504 TCAATGGCGGTGGGTTTAGT 59.597 50.000 0.00 0.00 0.00 2.24
135 136 0.808755 CAATGGCGGTGGGTTTAGTC 59.191 55.000 0.00 0.00 0.00 2.59
136 137 0.675522 AATGGCGGTGGGTTTAGTCG 60.676 55.000 0.00 0.00 0.00 4.18
137 138 2.435410 GGCGGTGGGTTTAGTCGG 60.435 66.667 0.00 0.00 0.00 4.79
138 139 3.122971 GCGGTGGGTTTAGTCGGC 61.123 66.667 0.00 0.00 0.00 5.54
139 140 2.812178 CGGTGGGTTTAGTCGGCG 60.812 66.667 0.00 0.00 0.00 6.46
140 141 2.344872 GGTGGGTTTAGTCGGCGT 59.655 61.111 6.85 0.00 0.00 5.68
141 142 2.030958 GGTGGGTTTAGTCGGCGTG 61.031 63.158 6.85 0.00 0.00 5.34
142 143 1.301165 GTGGGTTTAGTCGGCGTGT 60.301 57.895 6.85 0.00 0.00 4.49
143 144 1.005867 TGGGTTTAGTCGGCGTGTC 60.006 57.895 6.85 0.00 0.00 3.67
144 145 1.291272 GGGTTTAGTCGGCGTGTCT 59.709 57.895 6.85 7.00 0.00 3.41
145 146 0.735287 GGGTTTAGTCGGCGTGTCTC 60.735 60.000 6.85 0.00 0.00 3.36
146 147 1.069378 GGTTTAGTCGGCGTGTCTCG 61.069 60.000 6.85 0.00 43.12 4.04
147 148 0.110056 GTTTAGTCGGCGTGTCTCGA 60.110 55.000 6.85 0.00 42.86 4.04
154 155 4.104417 GCGTGTCTCGACGAGCCT 62.104 66.667 20.11 0.00 42.10 4.58
155 156 2.098680 CGTGTCTCGACGAGCCTC 59.901 66.667 20.11 8.91 42.10 4.70
156 157 2.486042 GTGTCTCGACGAGCCTCC 59.514 66.667 20.11 8.12 0.00 4.30
157 158 2.750637 TGTCTCGACGAGCCTCCC 60.751 66.667 20.11 5.81 0.00 4.30
158 159 2.438795 GTCTCGACGAGCCTCCCT 60.439 66.667 20.11 0.00 0.00 4.20
159 160 2.124653 TCTCGACGAGCCTCCCTC 60.125 66.667 20.11 0.00 37.22 4.30
160 161 2.438614 CTCGACGAGCCTCCCTCA 60.439 66.667 12.67 0.00 40.78 3.86
161 162 1.826054 CTCGACGAGCCTCCCTCAT 60.826 63.158 12.67 0.00 40.78 2.90
162 163 2.069465 CTCGACGAGCCTCCCTCATG 62.069 65.000 12.67 0.00 40.78 3.07
163 164 2.107953 GACGAGCCTCCCTCATGC 59.892 66.667 0.00 0.00 40.78 4.06
164 165 3.781770 GACGAGCCTCCCTCATGCG 62.782 68.421 0.00 0.00 40.78 4.73
165 166 4.598894 CGAGCCTCCCTCATGCGG 62.599 72.222 0.00 0.00 40.78 5.69
166 167 4.247380 GAGCCTCCCTCATGCGGG 62.247 72.222 15.13 15.13 46.13 6.13
172 173 4.856801 CCCTCATGCGGGGGAACG 62.857 72.222 13.42 0.00 45.18 3.95
173 174 4.856801 CCTCATGCGGGGGAACGG 62.857 72.222 0.00 0.00 0.00 4.44
200 201 4.722700 GGCGGTGTGAGGTGGCAT 62.723 66.667 0.00 0.00 0.00 4.40
201 202 2.672996 GCGGTGTGAGGTGGCATT 60.673 61.111 0.00 0.00 0.00 3.56
202 203 2.690778 GCGGTGTGAGGTGGCATTC 61.691 63.158 0.00 0.00 0.00 2.67
203 204 2.040544 CGGTGTGAGGTGGCATTCC 61.041 63.158 0.00 0.00 0.00 3.01
204 205 1.380302 GGTGTGAGGTGGCATTCCT 59.620 57.895 0.00 0.00 38.09 3.36
205 206 0.618458 GGTGTGAGGTGGCATTCCTA 59.382 55.000 0.00 0.00 35.20 2.94
206 207 1.407437 GGTGTGAGGTGGCATTCCTAG 60.407 57.143 0.00 0.00 35.20 3.02
207 208 0.911769 TGTGAGGTGGCATTCCTAGG 59.088 55.000 0.82 0.82 35.20 3.02
208 209 0.912486 GTGAGGTGGCATTCCTAGGT 59.088 55.000 9.08 0.00 35.20 3.08
209 210 0.911769 TGAGGTGGCATTCCTAGGTG 59.088 55.000 9.08 1.32 35.20 4.00
210 211 0.181350 GAGGTGGCATTCCTAGGTGG 59.819 60.000 9.08 0.58 35.20 4.61
211 212 1.453928 GGTGGCATTCCTAGGTGGC 60.454 63.158 16.57 16.57 40.89 5.01
212 213 1.819632 GTGGCATTCCTAGGTGGCG 60.820 63.158 17.76 4.20 43.15 5.69
213 214 2.203209 GGCATTCCTAGGTGGCGG 60.203 66.667 9.08 0.00 35.26 6.13
214 215 2.902343 GCATTCCTAGGTGGCGGC 60.902 66.667 9.08 0.00 35.26 6.53
215 216 2.589540 CATTCCTAGGTGGCGGCA 59.410 61.111 7.97 7.97 35.26 5.69
216 217 1.819632 CATTCCTAGGTGGCGGCAC 60.820 63.158 32.17 32.17 35.26 5.01
217 218 2.297895 ATTCCTAGGTGGCGGCACA 61.298 57.895 38.28 21.46 35.26 4.57
218 219 2.536997 ATTCCTAGGTGGCGGCACAC 62.537 60.000 38.28 27.88 40.60 3.82
238 239 2.027314 CGAGGAGCGCATGGAGAG 59.973 66.667 11.47 0.00 0.00 3.20
239 240 2.420890 GAGGAGCGCATGGAGAGG 59.579 66.667 11.47 0.00 0.00 3.69
240 241 3.805891 GAGGAGCGCATGGAGAGGC 62.806 68.421 11.47 0.00 0.00 4.70
258 259 4.008933 GGCACGTGGTCAGGAGCT 62.009 66.667 18.88 0.00 34.19 4.09
259 260 2.646175 GGCACGTGGTCAGGAGCTA 61.646 63.158 18.88 0.00 34.19 3.32
260 261 1.153745 GCACGTGGTCAGGAGCTAG 60.154 63.158 18.88 0.00 31.75 3.42
261 262 1.153745 CACGTGGTCAGGAGCTAGC 60.154 63.158 7.95 6.62 0.00 3.42
262 263 1.606601 ACGTGGTCAGGAGCTAGCA 60.607 57.895 18.83 0.00 0.00 3.49
263 264 1.140589 CGTGGTCAGGAGCTAGCAG 59.859 63.158 18.83 3.78 0.00 4.24
264 265 1.315981 CGTGGTCAGGAGCTAGCAGA 61.316 60.000 18.83 6.30 0.00 4.26
265 266 0.459489 GTGGTCAGGAGCTAGCAGAG 59.541 60.000 18.83 3.78 0.00 3.35
266 267 0.685785 TGGTCAGGAGCTAGCAGAGG 60.686 60.000 18.83 3.76 0.00 3.69
267 268 0.396417 GGTCAGGAGCTAGCAGAGGA 60.396 60.000 18.83 6.28 0.00 3.71
268 269 1.032014 GTCAGGAGCTAGCAGAGGAG 58.968 60.000 18.83 1.50 0.00 3.69
269 270 0.754957 TCAGGAGCTAGCAGAGGAGC 60.755 60.000 18.83 0.00 39.08 4.70
277 278 2.267324 GCAGAGGAGCTGGTGTCC 59.733 66.667 0.00 0.00 45.03 4.02
278 279 2.587247 GCAGAGGAGCTGGTGTCCA 61.587 63.158 0.00 0.00 45.03 4.02
286 287 3.891817 CTGGTGTCCAGTGGTCCT 58.108 61.111 9.54 0.00 45.82 3.85
287 288 1.674057 CTGGTGTCCAGTGGTCCTC 59.326 63.158 9.54 2.34 45.82 3.71
288 289 0.833834 CTGGTGTCCAGTGGTCCTCT 60.834 60.000 9.54 0.00 45.82 3.69
289 290 1.121407 TGGTGTCCAGTGGTCCTCTG 61.121 60.000 9.54 13.15 0.00 3.35
295 296 1.298014 CAGTGGTCCTCTGGAAGGC 59.702 63.158 12.40 0.00 45.78 4.35
296 297 2.266055 GTGGTCCTCTGGAAGGCG 59.734 66.667 0.00 0.00 45.78 5.52
297 298 3.706373 TGGTCCTCTGGAAGGCGC 61.706 66.667 0.00 0.00 45.78 6.53
298 299 4.475135 GGTCCTCTGGAAGGCGCC 62.475 72.222 21.89 21.89 45.78 6.53
299 300 3.706373 GTCCTCTGGAAGGCGCCA 61.706 66.667 31.54 6.61 45.78 5.69
322 323 3.849953 GATGCGTCGCGGTTGGTC 61.850 66.667 13.38 0.17 0.00 4.02
326 327 3.487202 CGTCGCGGTTGGTCCATG 61.487 66.667 6.13 0.00 35.57 3.66
327 328 3.124921 GTCGCGGTTGGTCCATGG 61.125 66.667 4.97 4.97 35.57 3.66
328 329 3.315140 TCGCGGTTGGTCCATGGA 61.315 61.111 11.44 11.44 35.57 3.41
329 330 2.124736 CGCGGTTGGTCCATGGAT 60.125 61.111 19.62 0.00 35.57 3.41
330 331 2.472059 CGCGGTTGGTCCATGGATG 61.472 63.158 19.62 5.30 35.57 3.51
331 332 1.378514 GCGGTTGGTCCATGGATGT 60.379 57.895 19.62 0.00 35.57 3.06
332 333 0.107410 GCGGTTGGTCCATGGATGTA 60.107 55.000 19.62 4.50 35.57 2.29
333 334 1.953559 CGGTTGGTCCATGGATGTAG 58.046 55.000 19.62 4.18 35.57 2.74
334 335 1.680338 GGTTGGTCCATGGATGTAGC 58.320 55.000 19.62 11.59 35.97 3.58
335 336 1.299541 GTTGGTCCATGGATGTAGCG 58.700 55.000 19.62 0.00 0.00 4.26
336 337 0.180171 TTGGTCCATGGATGTAGCGG 59.820 55.000 19.62 0.00 0.00 5.52
337 338 0.980754 TGGTCCATGGATGTAGCGGT 60.981 55.000 19.62 0.00 0.00 5.68
338 339 0.532862 GGTCCATGGATGTAGCGGTG 60.533 60.000 19.62 0.00 0.00 4.94
339 340 1.146041 TCCATGGATGTAGCGGTGC 59.854 57.895 11.44 0.00 0.00 5.01
340 341 2.246739 CCATGGATGTAGCGGTGCG 61.247 63.158 5.56 0.00 0.00 5.34
341 342 2.108976 ATGGATGTAGCGGTGCGG 59.891 61.111 0.00 0.00 0.00 5.69
342 343 2.731571 ATGGATGTAGCGGTGCGGT 61.732 57.895 0.00 0.00 41.50 5.68
343 344 2.890474 GGATGTAGCGGTGCGGTG 60.890 66.667 0.00 0.00 38.30 4.94
344 345 2.890474 GATGTAGCGGTGCGGTGG 60.890 66.667 0.00 0.00 38.30 4.61
371 372 4.363990 AGGTGACTGCGGTGCGAG 62.364 66.667 0.80 0.00 41.13 5.03
395 396 4.662961 TCAGCGGTGACTGCGGTG 62.663 66.667 14.39 11.20 37.59 4.94
396 397 4.969196 CAGCGGTGACTGCGGTGT 62.969 66.667 9.50 0.00 35.50 4.16
397 398 4.969196 AGCGGTGACTGCGGTGTG 62.969 66.667 11.19 0.00 35.50 3.82
399 400 4.602259 CGGTGACTGCGGTGTGGT 62.602 66.667 0.80 0.00 0.00 4.16
400 401 2.972505 GGTGACTGCGGTGTGGTG 60.973 66.667 0.80 0.00 0.00 4.17
401 402 2.972505 GTGACTGCGGTGTGGTGG 60.973 66.667 0.80 0.00 0.00 4.61
402 403 3.475494 TGACTGCGGTGTGGTGGT 61.475 61.111 0.80 0.00 0.00 4.16
403 404 2.972505 GACTGCGGTGTGGTGGTG 60.973 66.667 0.80 0.00 0.00 4.17
404 405 3.750373 GACTGCGGTGTGGTGGTGT 62.750 63.158 0.80 0.00 0.00 4.16
405 406 2.972505 CTGCGGTGTGGTGGTGTC 60.973 66.667 0.00 0.00 0.00 3.67
406 407 4.555709 TGCGGTGTGGTGGTGTCC 62.556 66.667 0.00 0.00 0.00 4.02
408 409 4.230002 CGGTGTGGTGGTGTCCGT 62.230 66.667 0.00 0.00 36.99 4.69
409 410 2.590575 GGTGTGGTGGTGTCCGTG 60.591 66.667 0.00 0.00 0.00 4.94
410 411 2.590575 GTGTGGTGGTGTCCGTGG 60.591 66.667 0.00 0.00 0.00 4.94
411 412 3.084646 TGTGGTGGTGTCCGTGGT 61.085 61.111 0.00 0.00 0.00 4.16
412 413 2.590575 GTGGTGGTGTCCGTGGTG 60.591 66.667 0.00 0.00 0.00 4.17
413 414 2.764547 TGGTGGTGTCCGTGGTGA 60.765 61.111 0.00 0.00 0.00 4.02
414 415 2.144078 TGGTGGTGTCCGTGGTGAT 61.144 57.895 0.00 0.00 0.00 3.06
415 416 1.671054 GGTGGTGTCCGTGGTGATG 60.671 63.158 0.00 0.00 0.00 3.07
416 417 1.070786 GTGGTGTCCGTGGTGATGT 59.929 57.895 0.00 0.00 0.00 3.06
417 418 1.070615 TGGTGTCCGTGGTGATGTG 59.929 57.895 0.00 0.00 0.00 3.21
418 419 1.369692 GGTGTCCGTGGTGATGTGA 59.630 57.895 0.00 0.00 0.00 3.58
419 420 0.670546 GGTGTCCGTGGTGATGTGAG 60.671 60.000 0.00 0.00 0.00 3.51
420 421 1.005037 TGTCCGTGGTGATGTGAGC 60.005 57.895 0.00 0.00 0.00 4.26
421 422 2.094659 GTCCGTGGTGATGTGAGCG 61.095 63.158 0.00 0.00 0.00 5.03
422 423 2.261361 CCGTGGTGATGTGAGCGA 59.739 61.111 0.00 0.00 0.00 4.93
423 424 2.094659 CCGTGGTGATGTGAGCGAC 61.095 63.158 0.00 0.00 0.00 5.19
424 425 1.372872 CGTGGTGATGTGAGCGACA 60.373 57.895 0.00 0.00 39.53 4.35
430 431 2.583319 ATGTGAGCGACATCGGCG 60.583 61.111 0.00 0.00 41.91 6.46
431 432 3.356639 ATGTGAGCGACATCGGCGT 62.357 57.895 6.85 0.00 41.91 5.68
432 433 3.545481 GTGAGCGACATCGGCGTG 61.545 66.667 6.85 7.38 40.23 5.34
433 434 4.050934 TGAGCGACATCGGCGTGT 62.051 61.111 6.85 10.90 40.23 4.49
434 435 2.809601 GAGCGACATCGGCGTGTT 60.810 61.111 6.85 0.00 40.23 3.32
435 436 3.071459 GAGCGACATCGGCGTGTTG 62.071 63.158 19.06 19.06 40.23 3.33
436 437 3.109547 GCGACATCGGCGTGTTGA 61.110 61.111 24.31 1.25 40.23 3.18
437 438 2.452813 GCGACATCGGCGTGTTGAT 61.453 57.895 24.31 3.52 40.23 2.57
438 439 1.344837 CGACATCGGCGTGTTGATG 59.655 57.895 18.77 12.42 45.83 3.07
439 440 1.715585 GACATCGGCGTGTTGATGG 59.284 57.895 6.85 0.00 44.90 3.51
440 441 0.739462 GACATCGGCGTGTTGATGGA 60.739 55.000 6.85 0.00 44.90 3.41
441 442 0.740868 ACATCGGCGTGTTGATGGAG 60.741 55.000 6.85 0.00 44.90 3.86
442 443 1.153369 ATCGGCGTGTTGATGGAGG 60.153 57.895 6.85 0.00 0.00 4.30
443 444 3.499737 CGGCGTGTTGATGGAGGC 61.500 66.667 0.00 0.00 0.00 4.70
444 445 2.045926 GGCGTGTTGATGGAGGCT 60.046 61.111 0.00 0.00 0.00 4.58
445 446 2.401766 GGCGTGTTGATGGAGGCTG 61.402 63.158 0.00 0.00 0.00 4.85
446 447 3.044059 GCGTGTTGATGGAGGCTGC 62.044 63.158 0.00 0.00 0.00 5.25
447 448 1.672030 CGTGTTGATGGAGGCTGCA 60.672 57.895 12.23 12.23 0.00 4.41
448 449 1.642037 CGTGTTGATGGAGGCTGCAG 61.642 60.000 15.56 10.11 0.00 4.41
449 450 0.607489 GTGTTGATGGAGGCTGCAGT 60.607 55.000 15.56 2.69 0.00 4.40
450 451 0.607217 TGTTGATGGAGGCTGCAGTG 60.607 55.000 15.56 0.00 0.00 3.66
451 452 1.676635 TTGATGGAGGCTGCAGTGC 60.677 57.895 15.56 8.58 0.00 4.40
452 453 3.200593 GATGGAGGCTGCAGTGCG 61.201 66.667 15.56 6.61 0.00 5.34
453 454 4.790962 ATGGAGGCTGCAGTGCGG 62.791 66.667 20.08 20.08 38.08 5.69
473 474 2.580867 GCTAGAGGCGTCAGTGCG 60.581 66.667 9.41 3.07 35.06 5.34
474 475 2.103143 CTAGAGGCGTCAGTGCGG 59.897 66.667 9.41 0.00 35.06 5.69
475 476 2.360726 TAGAGGCGTCAGTGCGGA 60.361 61.111 9.41 0.00 35.06 5.54
476 477 2.600122 CTAGAGGCGTCAGTGCGGAC 62.600 65.000 9.41 0.00 35.06 4.79
477 478 4.057428 GAGGCGTCAGTGCGGACT 62.057 66.667 2.68 2.68 35.63 3.85
478 479 2.675423 AGGCGTCAGTGCGGACTA 60.675 61.111 10.03 0.00 35.63 2.59
479 480 2.202623 GGCGTCAGTGCGGACTAG 60.203 66.667 10.03 5.62 35.63 2.57
480 481 2.697761 GGCGTCAGTGCGGACTAGA 61.698 63.158 10.03 7.19 35.63 2.43
481 482 1.433879 GCGTCAGTGCGGACTAGAT 59.566 57.895 10.03 0.00 35.63 1.98
482 483 0.592754 GCGTCAGTGCGGACTAGATC 60.593 60.000 10.03 0.00 35.63 2.75
483 484 1.018148 CGTCAGTGCGGACTAGATCT 58.982 55.000 10.03 0.00 35.63 2.75
484 485 1.402259 CGTCAGTGCGGACTAGATCTT 59.598 52.381 10.03 0.00 35.63 2.40
485 486 2.792890 CGTCAGTGCGGACTAGATCTTG 60.793 54.545 10.03 0.36 35.63 3.02
486 487 1.751351 TCAGTGCGGACTAGATCTTGG 59.249 52.381 10.03 0.00 0.00 3.61
487 488 1.478510 CAGTGCGGACTAGATCTTGGT 59.521 52.381 10.03 0.00 0.00 3.67
488 489 1.751924 AGTGCGGACTAGATCTTGGTC 59.248 52.381 8.23 15.76 0.00 4.02
489 490 1.112113 TGCGGACTAGATCTTGGTCC 58.888 55.000 25.40 25.40 44.16 4.46
490 491 1.112113 GCGGACTAGATCTTGGTCCA 58.888 55.000 30.03 4.82 46.93 4.02
491 492 1.480954 GCGGACTAGATCTTGGTCCAA 59.519 52.381 30.03 3.76 46.93 3.53
492 493 2.738964 GCGGACTAGATCTTGGTCCAAC 60.739 54.545 30.03 22.72 46.93 3.77
493 494 2.159085 CGGACTAGATCTTGGTCCAACC 60.159 54.545 30.03 15.51 46.93 3.77
494 495 2.170817 GGACTAGATCTTGGTCCAACCC 59.829 54.545 28.06 12.12 46.14 4.11
495 496 1.831736 ACTAGATCTTGGTCCAACCCG 59.168 52.381 0.00 0.00 37.50 5.28
496 497 2.108168 CTAGATCTTGGTCCAACCCGA 58.892 52.381 0.00 0.00 37.50 5.14
497 498 0.905357 AGATCTTGGTCCAACCCGAG 59.095 55.000 0.00 0.00 37.50 4.63
498 499 0.744771 GATCTTGGTCCAACCCGAGC 60.745 60.000 0.00 0.00 37.50 5.03
499 500 1.488705 ATCTTGGTCCAACCCGAGCA 61.489 55.000 0.00 0.00 37.50 4.26
500 501 1.966451 CTTGGTCCAACCCGAGCAC 60.966 63.158 0.00 0.00 39.84 4.40
501 502 3.818121 TTGGTCCAACCCGAGCACG 62.818 63.158 0.00 0.00 39.84 5.34
502 503 3.998672 GGTCCAACCCGAGCACGA 61.999 66.667 4.70 0.00 42.66 4.35
503 504 2.264794 GTCCAACCCGAGCACGAT 59.735 61.111 4.70 0.00 42.66 3.73
504 505 1.375523 GTCCAACCCGAGCACGATT 60.376 57.895 4.70 0.00 42.66 3.34
505 506 0.953960 GTCCAACCCGAGCACGATTT 60.954 55.000 4.70 0.00 42.66 2.17
506 507 0.953471 TCCAACCCGAGCACGATTTG 60.953 55.000 4.70 7.54 42.66 2.32
507 508 1.501741 CAACCCGAGCACGATTTGG 59.498 57.895 4.70 0.00 42.66 3.28
508 509 1.674322 AACCCGAGCACGATTTGGG 60.674 57.895 4.70 0.00 43.87 4.12
509 510 2.046314 CCCGAGCACGATTTGGGT 60.046 61.111 4.70 0.00 42.66 4.51
510 511 2.106683 CCCGAGCACGATTTGGGTC 61.107 63.158 4.70 0.00 42.66 4.46
511 512 2.106683 CCGAGCACGATTTGGGTCC 61.107 63.158 4.70 0.00 42.66 4.46
512 513 2.106683 CGAGCACGATTTGGGTCCC 61.107 63.158 0.00 0.00 42.66 4.46
513 514 1.299976 GAGCACGATTTGGGTCCCT 59.700 57.895 10.00 0.00 0.00 4.20
514 515 1.002134 AGCACGATTTGGGTCCCTG 60.002 57.895 10.00 0.00 0.00 4.45
515 516 2.046285 GCACGATTTGGGTCCCTGG 61.046 63.158 10.00 0.00 0.00 4.45
516 517 1.378514 CACGATTTGGGTCCCTGGG 60.379 63.158 10.00 6.33 0.00 4.45
517 518 1.850755 ACGATTTGGGTCCCTGGGT 60.851 57.895 13.56 0.00 0.00 4.51
518 519 1.077716 CGATTTGGGTCCCTGGGTC 60.078 63.158 13.56 7.08 0.00 4.46
519 520 1.077716 GATTTGGGTCCCTGGGTCG 60.078 63.158 13.56 0.00 0.00 4.79
520 521 1.848886 GATTTGGGTCCCTGGGTCGT 61.849 60.000 13.56 0.00 0.00 4.34
521 522 2.137177 ATTTGGGTCCCTGGGTCGTG 62.137 60.000 13.56 0.00 0.00 4.35
524 525 3.703127 GGTCCCTGGGTCGTGGAC 61.703 72.222 13.56 1.69 46.31 4.02
525 526 4.065281 GTCCCTGGGTCGTGGACG 62.065 72.222 13.56 0.00 39.22 4.79
526 527 4.608774 TCCCTGGGTCGTGGACGT 62.609 66.667 13.56 0.00 40.80 4.34
527 528 3.622826 CCCTGGGTCGTGGACGTT 61.623 66.667 3.97 0.00 40.80 3.99
528 529 2.357034 CCTGGGTCGTGGACGTTG 60.357 66.667 0.00 0.00 40.80 4.10
529 530 3.041940 CTGGGTCGTGGACGTTGC 61.042 66.667 0.00 0.00 40.80 4.17
530 531 4.953868 TGGGTCGTGGACGTTGCG 62.954 66.667 0.00 0.00 40.80 4.85
531 532 4.651008 GGGTCGTGGACGTTGCGA 62.651 66.667 6.07 6.07 40.80 5.10
532 533 3.103911 GGTCGTGGACGTTGCGAG 61.104 66.667 9.63 0.00 40.80 5.03
533 534 3.103911 GTCGTGGACGTTGCGAGG 61.104 66.667 9.63 0.00 40.80 4.63
536 537 2.260434 GTGGACGTTGCGAGGCTA 59.740 61.111 0.00 0.00 0.00 3.93
537 538 1.153628 GTGGACGTTGCGAGGCTAT 60.154 57.895 0.00 0.00 0.00 2.97
538 539 0.739813 GTGGACGTTGCGAGGCTATT 60.740 55.000 0.00 0.00 0.00 1.73
539 540 0.036765 TGGACGTTGCGAGGCTATTT 60.037 50.000 0.00 0.00 0.00 1.40
540 541 0.373716 GGACGTTGCGAGGCTATTTG 59.626 55.000 0.00 0.00 0.00 2.32
541 542 0.247695 GACGTTGCGAGGCTATTTGC 60.248 55.000 0.00 0.00 41.94 3.68
557 558 4.008933 GCCTGGAGTGGCGTGACT 62.009 66.667 0.00 0.00 43.74 3.41
558 559 2.646175 GCCTGGAGTGGCGTGACTA 61.646 63.158 0.00 0.00 43.74 2.59
559 560 1.513158 CCTGGAGTGGCGTGACTAG 59.487 63.158 0.00 0.00 0.00 2.57
560 561 1.153745 CTGGAGTGGCGTGACTAGC 60.154 63.158 0.00 0.00 0.00 3.42
561 562 1.599606 CTGGAGTGGCGTGACTAGCT 61.600 60.000 0.00 0.00 34.52 3.32
562 563 1.153745 GGAGTGGCGTGACTAGCTG 60.154 63.158 0.00 0.00 34.52 4.24
563 564 1.807573 GAGTGGCGTGACTAGCTGC 60.808 63.158 0.00 0.00 34.52 5.25
564 565 2.219325 GAGTGGCGTGACTAGCTGCT 62.219 60.000 7.57 7.57 34.52 4.24
565 566 1.374758 GTGGCGTGACTAGCTGCTT 60.375 57.895 7.79 0.00 34.52 3.91
566 567 1.079819 TGGCGTGACTAGCTGCTTC 60.080 57.895 7.79 0.02 34.52 3.86
567 568 1.811679 GGCGTGACTAGCTGCTTCC 60.812 63.158 7.79 0.00 34.52 3.46
568 569 2.161486 GCGTGACTAGCTGCTTCCG 61.161 63.158 7.79 7.55 0.00 4.30
569 570 1.517257 CGTGACTAGCTGCTTCCGG 60.517 63.158 7.79 0.00 0.00 5.14
570 571 1.592223 GTGACTAGCTGCTTCCGGT 59.408 57.895 7.79 2.15 0.00 5.28
571 572 0.737715 GTGACTAGCTGCTTCCGGTG 60.738 60.000 7.79 0.00 0.00 4.94
572 573 1.811679 GACTAGCTGCTTCCGGTGC 60.812 63.158 7.79 13.68 0.00 5.01
573 574 2.512515 CTAGCTGCTTCCGGTGCC 60.513 66.667 7.79 5.39 0.00 5.01
574 575 4.451150 TAGCTGCTTCCGGTGCCG 62.451 66.667 7.79 12.66 39.44 5.69
591 592 4.241555 GGCGGCCCTGATCGTGAT 62.242 66.667 8.12 0.00 0.00 3.06
592 593 2.969238 GCGGCCCTGATCGTGATG 60.969 66.667 0.00 0.00 0.00 3.07
593 594 2.280389 CGGCCCTGATCGTGATGG 60.280 66.667 0.00 0.00 0.00 3.51
594 595 2.592861 GGCCCTGATCGTGATGGC 60.593 66.667 0.00 2.01 41.42 4.40
595 596 2.190313 GCCCTGATCGTGATGGCA 59.810 61.111 5.16 0.00 41.76 4.92
596 597 1.451927 GCCCTGATCGTGATGGCAA 60.452 57.895 0.00 0.00 41.76 4.52
597 598 0.820891 GCCCTGATCGTGATGGCAAT 60.821 55.000 0.00 0.00 41.76 3.56
598 599 0.949397 CCCTGATCGTGATGGCAATG 59.051 55.000 0.00 0.00 0.00 2.82
599 600 0.949397 CCTGATCGTGATGGCAATGG 59.051 55.000 0.00 0.00 0.00 3.16
600 601 1.475571 CCTGATCGTGATGGCAATGGA 60.476 52.381 0.00 0.00 0.00 3.41
601 602 1.871676 CTGATCGTGATGGCAATGGAG 59.128 52.381 0.00 0.00 0.00 3.86
602 603 1.233019 GATCGTGATGGCAATGGAGG 58.767 55.000 0.00 0.00 0.00 4.30
603 604 0.548031 ATCGTGATGGCAATGGAGGT 59.452 50.000 0.00 0.00 0.00 3.85
604 605 0.327924 TCGTGATGGCAATGGAGGTT 59.672 50.000 0.00 0.00 0.00 3.50
605 606 0.452987 CGTGATGGCAATGGAGGTTG 59.547 55.000 0.00 0.00 0.00 3.77
606 607 0.819582 GTGATGGCAATGGAGGTTGG 59.180 55.000 0.00 0.00 0.00 3.77
607 608 0.324552 TGATGGCAATGGAGGTTGGG 60.325 55.000 0.00 0.00 0.00 4.12
608 609 1.679559 GATGGCAATGGAGGTTGGGC 61.680 60.000 0.00 0.00 0.00 5.36
609 610 2.283821 GGCAATGGAGGTTGGGCA 60.284 61.111 0.00 0.00 0.00 5.36
610 611 2.353610 GGCAATGGAGGTTGGGCAG 61.354 63.158 0.00 0.00 0.00 4.85
611 612 2.353610 GCAATGGAGGTTGGGCAGG 61.354 63.158 0.00 0.00 0.00 4.85
612 613 1.383799 CAATGGAGGTTGGGCAGGA 59.616 57.895 0.00 0.00 0.00 3.86
613 614 0.682209 CAATGGAGGTTGGGCAGGAG 60.682 60.000 0.00 0.00 0.00 3.69
614 615 2.505364 AATGGAGGTTGGGCAGGAGC 62.505 60.000 0.00 0.00 41.10 4.70
615 616 3.334054 GGAGGTTGGGCAGGAGCT 61.334 66.667 0.00 0.00 41.70 4.09
616 617 2.045536 GAGGTTGGGCAGGAGCTG 60.046 66.667 0.00 0.00 41.70 4.24
617 618 2.856000 AGGTTGGGCAGGAGCTGT 60.856 61.111 0.00 0.00 41.70 4.40
618 619 2.116125 GGTTGGGCAGGAGCTGTT 59.884 61.111 0.00 0.00 41.70 3.16
619 620 2.270986 GGTTGGGCAGGAGCTGTTG 61.271 63.158 0.00 0.00 41.70 3.33
620 621 2.115910 TTGGGCAGGAGCTGTTGG 59.884 61.111 0.00 0.00 41.70 3.77
621 622 2.766925 TTGGGCAGGAGCTGTTGGT 61.767 57.895 0.00 0.00 41.70 3.67
622 623 2.674380 GGGCAGGAGCTGTTGGTG 60.674 66.667 0.00 0.00 41.70 4.17
623 624 3.368571 GGCAGGAGCTGTTGGTGC 61.369 66.667 0.00 0.00 41.70 5.01
624 625 2.282040 GCAGGAGCTGTTGGTGCT 60.282 61.111 0.00 0.00 43.00 4.40
629 630 2.282040 AGCTGTTGGTGCTCAGGC 60.282 61.111 0.00 0.00 35.67 4.85
630 631 3.368571 GCTGTTGGTGCTCAGGCC 61.369 66.667 0.00 0.00 37.74 5.19
631 632 2.674380 CTGTTGGTGCTCAGGCCC 60.674 66.667 0.00 0.00 37.74 5.80
632 633 4.641645 TGTTGGTGCTCAGGCCCG 62.642 66.667 0.00 0.00 37.74 6.13
646 647 4.101448 CCCGGCTGGAGGTGGAAG 62.101 72.222 15.09 0.00 37.49 3.46
647 648 3.003173 CCGGCTGGAGGTGGAAGA 61.003 66.667 5.28 0.00 37.49 2.87
648 649 2.370445 CCGGCTGGAGGTGGAAGAT 61.370 63.158 5.28 0.00 37.49 2.40
649 650 1.153289 CGGCTGGAGGTGGAAGATG 60.153 63.158 0.00 0.00 0.00 2.90
650 651 1.225704 GGCTGGAGGTGGAAGATGG 59.774 63.158 0.00 0.00 0.00 3.51
651 652 1.274703 GGCTGGAGGTGGAAGATGGA 61.275 60.000 0.00 0.00 0.00 3.41
652 653 0.107459 GCTGGAGGTGGAAGATGGAC 60.107 60.000 0.00 0.00 0.00 4.02
653 654 1.577736 CTGGAGGTGGAAGATGGACT 58.422 55.000 0.00 0.00 0.00 3.85
654 655 1.209019 CTGGAGGTGGAAGATGGACTG 59.791 57.143 0.00 0.00 0.00 3.51
655 656 1.280457 GGAGGTGGAAGATGGACTGT 58.720 55.000 0.00 0.00 0.00 3.55
656 657 1.065854 GGAGGTGGAAGATGGACTGTG 60.066 57.143 0.00 0.00 0.00 3.66
657 658 1.625818 GAGGTGGAAGATGGACTGTGT 59.374 52.381 0.00 0.00 0.00 3.72
658 659 2.039084 GAGGTGGAAGATGGACTGTGTT 59.961 50.000 0.00 0.00 0.00 3.32
659 660 2.443255 AGGTGGAAGATGGACTGTGTTT 59.557 45.455 0.00 0.00 0.00 2.83
660 661 2.814336 GGTGGAAGATGGACTGTGTTTC 59.186 50.000 0.00 0.00 0.00 2.78
661 662 2.814336 GTGGAAGATGGACTGTGTTTCC 59.186 50.000 0.00 0.00 35.72 3.13
662 663 2.711009 TGGAAGATGGACTGTGTTTCCT 59.289 45.455 3.12 0.00 36.06 3.36
663 664 3.138283 TGGAAGATGGACTGTGTTTCCTT 59.862 43.478 3.12 0.00 36.06 3.36
664 665 3.503748 GGAAGATGGACTGTGTTTCCTTG 59.496 47.826 0.00 0.00 33.84 3.61
665 666 3.864789 AGATGGACTGTGTTTCCTTGT 57.135 42.857 0.00 0.00 33.84 3.16
666 667 3.480470 AGATGGACTGTGTTTCCTTGTG 58.520 45.455 0.00 0.00 33.84 3.33
667 668 1.388547 TGGACTGTGTTTCCTTGTGC 58.611 50.000 0.00 0.00 33.84 4.57
668 669 0.307760 GGACTGTGTTTCCTTGTGCG 59.692 55.000 0.00 0.00 0.00 5.34
669 670 0.307760 GACTGTGTTTCCTTGTGCGG 59.692 55.000 0.00 0.00 0.00 5.69
670 671 1.101049 ACTGTGTTTCCTTGTGCGGG 61.101 55.000 0.00 0.00 0.00 6.13
671 672 2.335011 GTGTTTCCTTGTGCGGGC 59.665 61.111 0.00 0.00 0.00 6.13
672 673 2.193536 GTGTTTCCTTGTGCGGGCT 61.194 57.895 0.00 0.00 0.00 5.19
673 674 2.192861 TGTTTCCTTGTGCGGGCTG 61.193 57.895 0.00 0.00 0.00 4.85
674 675 3.294493 TTTCCTTGTGCGGGCTGC 61.294 61.111 12.43 12.43 46.70 5.25
684 685 4.473520 CGGGCTGCCGATGTTCCT 62.474 66.667 13.40 0.00 34.88 3.36
685 686 2.825836 GGGCTGCCGATGTTCCTG 60.826 66.667 13.40 0.00 0.00 3.86
686 687 3.512516 GGCTGCCGATGTTCCTGC 61.513 66.667 1.35 0.00 0.00 4.85
687 688 2.747460 GCTGCCGATGTTCCTGCA 60.747 61.111 0.00 0.00 0.00 4.41
688 689 2.334946 GCTGCCGATGTTCCTGCAA 61.335 57.895 0.00 0.00 32.58 4.08
689 690 1.503542 CTGCCGATGTTCCTGCAAC 59.496 57.895 0.00 0.00 32.58 4.17
690 691 0.957395 CTGCCGATGTTCCTGCAACT 60.957 55.000 0.00 0.00 35.79 3.16
691 692 0.537143 TGCCGATGTTCCTGCAACTT 60.537 50.000 0.00 0.00 35.79 2.66
692 693 0.598065 GCCGATGTTCCTGCAACTTT 59.402 50.000 0.00 0.00 35.79 2.66
693 694 1.810151 GCCGATGTTCCTGCAACTTTA 59.190 47.619 0.00 0.00 35.79 1.85
694 695 2.423538 GCCGATGTTCCTGCAACTTTAT 59.576 45.455 0.00 0.00 35.79 1.40
695 696 3.731867 GCCGATGTTCCTGCAACTTTATG 60.732 47.826 0.00 0.00 35.79 1.90
696 697 3.181497 CCGATGTTCCTGCAACTTTATGG 60.181 47.826 0.00 0.00 35.79 2.74
697 698 3.440173 CGATGTTCCTGCAACTTTATGGT 59.560 43.478 0.00 0.00 35.79 3.55
698 699 4.437390 CGATGTTCCTGCAACTTTATGGTC 60.437 45.833 0.00 0.00 35.79 4.02
699 700 3.826524 TGTTCCTGCAACTTTATGGTCA 58.173 40.909 0.00 0.00 35.79 4.02
700 701 4.406456 TGTTCCTGCAACTTTATGGTCAT 58.594 39.130 0.00 0.00 35.79 3.06
701 702 4.218200 TGTTCCTGCAACTTTATGGTCATG 59.782 41.667 0.00 0.00 35.79 3.07
766 767 3.195002 CCGCTGGCATACGGTGTG 61.195 66.667 18.08 0.00 44.46 3.82
833 834 3.818210 CACGATCTCTAGTAGTGGAGCAT 59.182 47.826 6.07 1.70 31.34 3.79
867 868 2.391389 GCTGCCGTCCTGTAAGTGC 61.391 63.158 0.00 0.00 0.00 4.40
901 902 3.839293 GCCTAGAGCATAATCGATCGTT 58.161 45.455 15.94 11.12 42.97 3.85
936 937 6.613271 TCTCCCTAATCTTCTCAGCTTACATT 59.387 38.462 0.00 0.00 0.00 2.71
951 952 4.101741 GCTTACATTGTATCAGACTCCCCT 59.898 45.833 0.00 0.00 0.00 4.79
1406 1447 0.036010 GTGGTGCACTGGCTCTACAT 60.036 55.000 17.98 0.00 42.40 2.29
1610 1651 1.363744 CAGTTCACCGATCAGCTTCC 58.636 55.000 0.00 0.00 0.00 3.46
1936 1985 0.255033 TCCTCCGACATCTCCTTCGA 59.745 55.000 0.00 0.00 37.43 3.71
2073 2208 1.152247 TGGCACACTGAGGGAGTCT 60.152 57.895 0.00 0.00 29.75 3.24
2240 2380 2.309755 TCTCCTCCCTTGTAACCGACTA 59.690 50.000 0.00 0.00 0.00 2.59
2256 2396 2.957006 CGACTATGTGTAACCCTAGCCT 59.043 50.000 0.00 0.00 34.36 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.879575 TAGATGGGAGGGACTTGTGG 58.120 55.000 0.00 0.00 41.55 4.17
1 2 3.041211 TCATAGATGGGAGGGACTTGTG 58.959 50.000 0.00 0.00 41.55 3.33
2 3 3.421394 TCATAGATGGGAGGGACTTGT 57.579 47.619 0.00 0.00 41.55 3.16
3 4 3.262915 GGATCATAGATGGGAGGGACTTG 59.737 52.174 0.00 0.00 41.55 3.16
4 5 3.116199 TGGATCATAGATGGGAGGGACTT 60.116 47.826 0.00 0.00 41.55 3.01
6 7 2.569404 GTGGATCATAGATGGGAGGGAC 59.431 54.545 0.00 0.00 0.00 4.46
7 8 2.456340 AGTGGATCATAGATGGGAGGGA 59.544 50.000 0.00 0.00 0.00 4.20
8 9 2.570752 CAGTGGATCATAGATGGGAGGG 59.429 54.545 0.00 0.00 0.00 4.30
9 10 2.570752 CCAGTGGATCATAGATGGGAGG 59.429 54.545 1.68 0.00 0.00 4.30
10 11 2.027377 GCCAGTGGATCATAGATGGGAG 60.027 54.545 15.20 0.00 0.00 4.30
11 12 1.980765 GCCAGTGGATCATAGATGGGA 59.019 52.381 15.20 0.00 0.00 4.37
12 13 1.004044 GGCCAGTGGATCATAGATGGG 59.996 57.143 15.20 0.00 0.00 4.00
13 14 1.338484 CGGCCAGTGGATCATAGATGG 60.338 57.143 15.20 0.00 0.00 3.51
14 15 1.943046 GCGGCCAGTGGATCATAGATG 60.943 57.143 15.20 0.00 0.00 2.90
15 16 0.322975 GCGGCCAGTGGATCATAGAT 59.677 55.000 15.20 0.00 0.00 1.98
16 17 1.748403 GCGGCCAGTGGATCATAGA 59.252 57.895 15.20 0.00 0.00 1.98
17 18 1.302033 GGCGGCCAGTGGATCATAG 60.302 63.158 15.20 0.00 0.00 2.23
18 19 2.069430 TGGCGGCCAGTGGATCATA 61.069 57.895 19.77 0.00 0.00 2.15
19 20 3.410628 TGGCGGCCAGTGGATCAT 61.411 61.111 19.77 0.00 0.00 2.45
20 21 4.408821 GTGGCGGCCAGTGGATCA 62.409 66.667 24.58 1.53 32.34 2.92
39 40 2.990967 AATTGTGGCAGTGGCGGG 60.991 61.111 12.58 0.00 42.47 6.13
40 41 2.568090 GAATTGTGGCAGTGGCGG 59.432 61.111 12.58 0.00 42.47 6.13
41 42 2.568090 GGAATTGTGGCAGTGGCG 59.432 61.111 12.58 0.00 42.47 5.69
42 43 1.598701 GAGGGAATTGTGGCAGTGGC 61.599 60.000 10.30 10.30 40.13 5.01
43 44 0.967380 GGAGGGAATTGTGGCAGTGG 60.967 60.000 0.00 0.00 0.00 4.00
44 45 0.967380 GGGAGGGAATTGTGGCAGTG 60.967 60.000 0.00 0.00 0.00 3.66
45 46 1.384191 GGGAGGGAATTGTGGCAGT 59.616 57.895 0.00 0.00 0.00 4.40
46 47 0.032813 ATGGGAGGGAATTGTGGCAG 60.033 55.000 0.00 0.00 0.00 4.85
47 48 0.033208 GATGGGAGGGAATTGTGGCA 60.033 55.000 0.00 0.00 0.00 4.92
48 49 0.756815 GGATGGGAGGGAATTGTGGC 60.757 60.000 0.00 0.00 0.00 5.01
49 50 0.466189 CGGATGGGAGGGAATTGTGG 60.466 60.000 0.00 0.00 0.00 4.17
50 51 0.255890 ACGGATGGGAGGGAATTGTG 59.744 55.000 0.00 0.00 0.00 3.33
51 52 0.255890 CACGGATGGGAGGGAATTGT 59.744 55.000 0.00 0.00 0.00 2.71
52 53 0.546122 TCACGGATGGGAGGGAATTG 59.454 55.000 0.00 0.00 0.00 2.32
53 54 1.421646 GATCACGGATGGGAGGGAATT 59.578 52.381 0.00 0.00 0.00 2.17
54 55 1.059913 GATCACGGATGGGAGGGAAT 58.940 55.000 0.00 0.00 0.00 3.01
55 56 1.054406 GGATCACGGATGGGAGGGAA 61.054 60.000 0.00 0.00 0.00 3.97
56 57 1.459539 GGATCACGGATGGGAGGGA 60.460 63.158 0.00 0.00 0.00 4.20
57 58 2.520536 GGGATCACGGATGGGAGGG 61.521 68.421 0.00 0.00 0.00 4.30
58 59 2.520536 GGGGATCACGGATGGGAGG 61.521 68.421 0.00 0.00 0.00 4.30
59 60 0.178932 TAGGGGATCACGGATGGGAG 60.179 60.000 0.00 0.00 0.00 4.30
60 61 0.178932 CTAGGGGATCACGGATGGGA 60.179 60.000 0.00 0.00 0.00 4.37
61 62 1.831652 GCTAGGGGATCACGGATGGG 61.832 65.000 0.00 0.00 0.00 4.00
62 63 1.674057 GCTAGGGGATCACGGATGG 59.326 63.158 0.00 0.00 0.00 3.51
63 64 1.290324 CGCTAGGGGATCACGGATG 59.710 63.158 0.00 0.00 0.00 3.51
64 65 1.908793 CCGCTAGGGGATCACGGAT 60.909 63.158 20.99 0.00 46.71 4.18
65 66 2.520982 CCGCTAGGGGATCACGGA 60.521 66.667 20.99 0.00 46.71 4.69
66 67 3.151958 CACCGCTAGGGGATCACGG 62.152 68.421 31.00 16.09 46.39 4.94
67 68 2.417516 CACCGCTAGGGGATCACG 59.582 66.667 31.00 10.49 46.39 4.35
68 69 0.757935 TACCACCGCTAGGGGATCAC 60.758 60.000 31.00 0.00 46.39 3.06
69 70 0.031917 TTACCACCGCTAGGGGATCA 60.032 55.000 31.00 10.84 46.39 2.92
70 71 0.391966 GTTACCACCGCTAGGGGATC 59.608 60.000 31.00 10.80 46.39 3.36
71 72 0.325860 TGTTACCACCGCTAGGGGAT 60.326 55.000 31.00 17.68 46.39 3.85
72 73 1.078891 TGTTACCACCGCTAGGGGA 59.921 57.895 31.00 6.85 46.39 4.81
73 74 1.219935 GTGTTACCACCGCTAGGGG 59.780 63.158 23.57 23.57 43.47 4.79
74 75 1.153706 CGTGTTACCACCGCTAGGG 60.154 63.158 0.00 0.00 43.47 3.53
75 76 1.808390 GCGTGTTACCACCGCTAGG 60.808 63.158 0.00 0.00 45.13 3.02
76 77 1.076533 CTGCGTGTTACCACCGCTAG 61.077 60.000 11.18 0.00 39.87 3.42
77 78 1.080366 CTGCGTGTTACCACCGCTA 60.080 57.895 11.18 0.37 39.87 4.26
78 79 2.357034 CTGCGTGTTACCACCGCT 60.357 61.111 11.18 0.00 39.87 5.52
79 80 2.663852 ACTGCGTGTTACCACCGC 60.664 61.111 0.00 0.00 38.41 5.68
80 81 2.314647 CCACTGCGTGTTACCACCG 61.315 63.158 7.68 0.00 38.41 4.94
81 82 1.227734 ACCACTGCGTGTTACCACC 60.228 57.895 7.68 0.00 38.41 4.61
82 83 0.531090 TCACCACTGCGTGTTACCAC 60.531 55.000 7.68 0.00 38.27 4.16
83 84 0.394938 ATCACCACTGCGTGTTACCA 59.605 50.000 7.68 0.00 35.18 3.25
84 85 0.796312 CATCACCACTGCGTGTTACC 59.204 55.000 7.68 0.00 35.18 2.85
85 86 0.796312 CCATCACCACTGCGTGTTAC 59.204 55.000 7.68 0.00 35.18 2.50
86 87 0.953471 GCCATCACCACTGCGTGTTA 60.953 55.000 7.68 0.00 35.18 2.41
87 88 2.260869 GCCATCACCACTGCGTGTT 61.261 57.895 7.68 0.00 35.18 3.32
88 89 2.669569 GCCATCACCACTGCGTGT 60.670 61.111 7.68 0.00 35.18 4.49
89 90 3.792047 CGCCATCACCACTGCGTG 61.792 66.667 0.00 2.27 41.95 5.34
109 110 3.803082 CACCGCCATTGACAGCCG 61.803 66.667 0.00 0.00 0.00 5.52
110 111 3.443045 CCACCGCCATTGACAGCC 61.443 66.667 0.00 0.00 0.00 4.85
111 112 3.443045 CCCACCGCCATTGACAGC 61.443 66.667 0.00 0.00 0.00 4.40
112 113 1.178534 AAACCCACCGCCATTGACAG 61.179 55.000 0.00 0.00 0.00 3.51
113 114 0.110678 TAAACCCACCGCCATTGACA 59.889 50.000 0.00 0.00 0.00 3.58
114 115 0.808755 CTAAACCCACCGCCATTGAC 59.191 55.000 0.00 0.00 0.00 3.18
115 116 0.402504 ACTAAACCCACCGCCATTGA 59.597 50.000 0.00 0.00 0.00 2.57
116 117 0.808755 GACTAAACCCACCGCCATTG 59.191 55.000 0.00 0.00 0.00 2.82
117 118 0.675522 CGACTAAACCCACCGCCATT 60.676 55.000 0.00 0.00 0.00 3.16
118 119 1.078708 CGACTAAACCCACCGCCAT 60.079 57.895 0.00 0.00 0.00 4.40
119 120 2.344500 CGACTAAACCCACCGCCA 59.656 61.111 0.00 0.00 0.00 5.69
120 121 2.435410 CCGACTAAACCCACCGCC 60.435 66.667 0.00 0.00 0.00 6.13
121 122 3.122971 GCCGACTAAACCCACCGC 61.123 66.667 0.00 0.00 0.00 5.68
122 123 2.812178 CGCCGACTAAACCCACCG 60.812 66.667 0.00 0.00 0.00 4.94
123 124 2.030958 CACGCCGACTAAACCCACC 61.031 63.158 0.00 0.00 0.00 4.61
124 125 1.287041 GACACGCCGACTAAACCCAC 61.287 60.000 0.00 0.00 0.00 4.61
125 126 1.005867 GACACGCCGACTAAACCCA 60.006 57.895 0.00 0.00 0.00 4.51
126 127 0.735287 GAGACACGCCGACTAAACCC 60.735 60.000 0.00 0.00 0.00 4.11
127 128 1.069378 CGAGACACGCCGACTAAACC 61.069 60.000 0.00 0.00 34.51 3.27
128 129 0.110056 TCGAGACACGCCGACTAAAC 60.110 55.000 0.00 0.00 42.26 2.01
129 130 2.246841 TCGAGACACGCCGACTAAA 58.753 52.632 0.00 0.00 42.26 1.85
130 131 2.231745 CGTCGAGACACGCCGACTAA 62.232 60.000 12.10 0.00 46.15 2.24
131 132 2.733671 CGTCGAGACACGCCGACTA 61.734 63.158 12.10 0.00 46.15 2.59
132 133 4.086178 CGTCGAGACACGCCGACT 62.086 66.667 12.10 0.00 46.15 4.18
133 134 3.978867 CTCGTCGAGACACGCCGAC 62.979 68.421 17.52 0.00 46.70 4.79
137 138 4.104417 AGGCTCGTCGAGACACGC 62.104 66.667 29.15 12.57 40.81 5.34
138 139 2.098680 GAGGCTCGTCGAGACACG 59.901 66.667 29.15 2.07 40.81 4.49
139 140 2.486042 GGAGGCTCGTCGAGACAC 59.514 66.667 29.15 22.76 40.81 3.67
140 141 2.750637 GGGAGGCTCGTCGAGACA 60.751 66.667 29.15 0.00 40.81 3.41
141 142 2.438795 AGGGAGGCTCGTCGAGAC 60.439 66.667 26.11 23.61 38.12 3.36
142 143 2.124653 GAGGGAGGCTCGTCGAGA 60.125 66.667 26.11 0.00 0.00 4.04
143 144 1.826054 ATGAGGGAGGCTCGTCGAG 60.826 63.158 18.08 18.08 0.00 4.04
144 145 2.121538 CATGAGGGAGGCTCGTCGA 61.122 63.158 8.69 0.00 0.00 4.20
145 146 2.415010 CATGAGGGAGGCTCGTCG 59.585 66.667 8.69 0.00 0.00 5.12
146 147 2.107953 GCATGAGGGAGGCTCGTC 59.892 66.667 8.69 8.42 0.00 4.20
147 148 3.842923 CGCATGAGGGAGGCTCGT 61.843 66.667 8.69 0.00 0.00 4.18
148 149 4.598894 CCGCATGAGGGAGGCTCG 62.599 72.222 7.75 0.00 0.00 5.03
156 157 4.856801 CCGTTCCCCCGCATGAGG 62.857 72.222 8.78 8.78 0.00 3.86
183 184 4.722700 ATGCCACCTCACACCGCC 62.723 66.667 0.00 0.00 0.00 6.13
184 185 2.672996 AATGCCACCTCACACCGC 60.673 61.111 0.00 0.00 0.00 5.68
185 186 2.040544 GGAATGCCACCTCACACCG 61.041 63.158 0.00 0.00 0.00 4.94
186 187 0.618458 TAGGAATGCCACCTCACACC 59.382 55.000 0.00 0.00 38.76 4.16
187 188 1.407437 CCTAGGAATGCCACCTCACAC 60.407 57.143 1.05 0.00 38.76 3.82
188 189 0.911769 CCTAGGAATGCCACCTCACA 59.088 55.000 1.05 0.00 38.76 3.58
189 190 0.912486 ACCTAGGAATGCCACCTCAC 59.088 55.000 17.98 0.00 38.76 3.51
190 191 0.911769 CACCTAGGAATGCCACCTCA 59.088 55.000 17.98 0.00 38.76 3.86
191 192 0.181350 CCACCTAGGAATGCCACCTC 59.819 60.000 17.98 0.00 41.22 3.85
192 193 1.926426 GCCACCTAGGAATGCCACCT 61.926 60.000 17.98 0.00 41.22 4.00
193 194 1.453928 GCCACCTAGGAATGCCACC 60.454 63.158 17.98 0.00 41.22 4.61
194 195 1.819632 CGCCACCTAGGAATGCCAC 60.820 63.158 17.98 0.00 41.22 5.01
195 196 2.589540 CGCCACCTAGGAATGCCA 59.410 61.111 17.98 0.00 41.22 4.92
196 197 2.203209 CCGCCACCTAGGAATGCC 60.203 66.667 17.98 0.00 41.22 4.40
197 198 2.902343 GCCGCCACCTAGGAATGC 60.902 66.667 17.98 13.38 41.22 3.56
198 199 1.819632 GTGCCGCCACCTAGGAATG 60.820 63.158 17.98 3.76 41.22 2.67
199 200 2.297895 TGTGCCGCCACCTAGGAAT 61.298 57.895 17.98 0.00 41.35 3.01
200 201 2.925706 TGTGCCGCCACCTAGGAA 60.926 61.111 17.98 0.00 41.35 3.36
201 202 3.702048 GTGTGCCGCCACCTAGGA 61.702 66.667 17.98 0.00 41.35 2.94
221 222 2.027314 CTCTCCATGCGCTCCTCG 59.973 66.667 9.73 0.00 42.12 4.63
222 223 2.420890 CCTCTCCATGCGCTCCTC 59.579 66.667 9.73 0.00 0.00 3.71
223 224 3.859414 GCCTCTCCATGCGCTCCT 61.859 66.667 9.73 0.00 0.00 3.69
230 231 4.457496 ACGTGCCGCCTCTCCATG 62.457 66.667 0.00 0.00 0.00 3.66
231 232 4.457496 CACGTGCCGCCTCTCCAT 62.457 66.667 0.82 0.00 0.00 3.41
241 242 2.564553 CTAGCTCCTGACCACGTGCC 62.565 65.000 10.91 4.54 0.00 5.01
242 243 1.153745 CTAGCTCCTGACCACGTGC 60.154 63.158 10.91 0.00 0.00 5.34
243 244 1.153745 GCTAGCTCCTGACCACGTG 60.154 63.158 9.08 9.08 0.00 4.49
244 245 1.599606 CTGCTAGCTCCTGACCACGT 61.600 60.000 17.23 0.00 0.00 4.49
245 246 1.140589 CTGCTAGCTCCTGACCACG 59.859 63.158 17.23 0.00 0.00 4.94
246 247 0.459489 CTCTGCTAGCTCCTGACCAC 59.541 60.000 17.23 0.00 0.00 4.16
247 248 0.685785 CCTCTGCTAGCTCCTGACCA 60.686 60.000 17.23 0.00 0.00 4.02
248 249 0.396417 TCCTCTGCTAGCTCCTGACC 60.396 60.000 17.23 0.00 0.00 4.02
249 250 1.032014 CTCCTCTGCTAGCTCCTGAC 58.968 60.000 17.23 0.00 0.00 3.51
250 251 0.754957 GCTCCTCTGCTAGCTCCTGA 60.755 60.000 17.23 8.03 35.80 3.86
251 252 0.756442 AGCTCCTCTGCTAGCTCCTG 60.756 60.000 17.23 3.90 45.92 3.86
252 253 0.756442 CAGCTCCTCTGCTAGCTCCT 60.756 60.000 17.23 0.00 45.92 3.69
253 254 1.741525 CAGCTCCTCTGCTAGCTCC 59.258 63.158 17.23 0.00 45.92 4.70
254 255 1.042559 ACCAGCTCCTCTGCTAGCTC 61.043 60.000 17.23 0.00 45.92 4.09
256 257 1.143620 CACCAGCTCCTCTGCTAGC 59.856 63.158 8.10 8.10 41.98 3.42
257 258 0.459489 GACACCAGCTCCTCTGCTAG 59.541 60.000 0.00 0.00 41.98 3.42
258 259 0.972983 GGACACCAGCTCCTCTGCTA 60.973 60.000 0.00 0.00 41.98 3.49
259 260 2.289532 GGACACCAGCTCCTCTGCT 61.290 63.158 0.00 0.00 45.18 4.24
260 261 2.267324 GGACACCAGCTCCTCTGC 59.733 66.667 0.00 0.00 41.50 4.26
261 262 1.595882 CTGGACACCAGCTCCTCTG 59.404 63.158 4.84 0.00 45.13 3.35
262 263 4.126908 CTGGACACCAGCTCCTCT 57.873 61.111 4.84 0.00 45.13 3.69
270 271 1.121407 CAGAGGACCACTGGACACCA 61.121 60.000 10.87 0.00 0.00 4.17
271 272 1.674057 CAGAGGACCACTGGACACC 59.326 63.158 10.87 2.58 0.00 4.16
290 291 4.496336 ATCCCTGCTGGCGCCTTC 62.496 66.667 29.70 19.23 34.43 3.46
291 292 4.809496 CATCCCTGCTGGCGCCTT 62.809 66.667 29.70 0.00 34.43 4.35
305 306 3.849953 GACCAACCGCGACGCATC 61.850 66.667 21.35 3.24 0.00 3.91
309 310 3.487202 CATGGACCAACCGCGACG 61.487 66.667 8.23 0.00 42.61 5.12
310 311 2.869503 ATCCATGGACCAACCGCGAC 62.870 60.000 18.99 0.00 42.61 5.19
311 312 2.665089 ATCCATGGACCAACCGCGA 61.665 57.895 18.99 0.00 42.61 5.87
312 313 2.124736 ATCCATGGACCAACCGCG 60.125 61.111 18.99 0.00 42.61 6.46
313 314 0.107410 TACATCCATGGACCAACCGC 60.107 55.000 18.99 0.00 42.61 5.68
314 315 1.953559 CTACATCCATGGACCAACCG 58.046 55.000 18.99 4.13 42.61 4.44
315 316 1.680338 GCTACATCCATGGACCAACC 58.320 55.000 18.99 1.96 39.54 3.77
316 317 1.299541 CGCTACATCCATGGACCAAC 58.700 55.000 18.99 5.05 0.00 3.77
317 318 0.180171 CCGCTACATCCATGGACCAA 59.820 55.000 18.99 3.95 0.00 3.67
318 319 0.980754 ACCGCTACATCCATGGACCA 60.981 55.000 18.99 3.95 0.00 4.02
319 320 0.532862 CACCGCTACATCCATGGACC 60.533 60.000 18.99 2.40 0.00 4.46
320 321 1.160329 GCACCGCTACATCCATGGAC 61.160 60.000 18.99 2.45 0.00 4.02
321 322 1.146041 GCACCGCTACATCCATGGA 59.854 57.895 18.88 18.88 0.00 3.41
322 323 2.246739 CGCACCGCTACATCCATGG 61.247 63.158 4.97 4.97 0.00 3.66
323 324 2.246739 CCGCACCGCTACATCCATG 61.247 63.158 0.00 0.00 0.00 3.66
324 325 2.108976 CCGCACCGCTACATCCAT 59.891 61.111 0.00 0.00 0.00 3.41
325 326 3.387091 ACCGCACCGCTACATCCA 61.387 61.111 0.00 0.00 0.00 3.41
326 327 2.890474 CACCGCACCGCTACATCC 60.890 66.667 0.00 0.00 0.00 3.51
327 328 2.890474 CCACCGCACCGCTACATC 60.890 66.667 0.00 0.00 0.00 3.06
353 354 4.662961 TCGCACCGCAGTCACCTG 62.663 66.667 0.00 0.00 41.91 4.00
354 355 4.363990 CTCGCACCGCAGTCACCT 62.364 66.667 0.00 0.00 0.00 4.00
377 378 4.664677 ACCGCAGTCACCGCTGAC 62.665 66.667 2.49 2.49 46.50 3.51
378 379 4.662961 CACCGCAGTCACCGCTGA 62.663 66.667 0.00 0.00 38.70 4.26
379 380 4.969196 ACACCGCAGTCACCGCTG 62.969 66.667 0.00 0.00 39.37 5.18
380 381 4.969196 CACACCGCAGTCACCGCT 62.969 66.667 0.00 0.00 0.00 5.52
382 383 4.602259 ACCACACCGCAGTCACCG 62.602 66.667 0.00 0.00 0.00 4.94
383 384 2.972505 CACCACACCGCAGTCACC 60.973 66.667 0.00 0.00 0.00 4.02
384 385 2.972505 CCACCACACCGCAGTCAC 60.973 66.667 0.00 0.00 0.00 3.67
385 386 3.475494 ACCACCACACCGCAGTCA 61.475 61.111 0.00 0.00 0.00 3.41
386 387 2.972505 CACCACCACACCGCAGTC 60.973 66.667 0.00 0.00 0.00 3.51
387 388 3.750373 GACACCACCACACCGCAGT 62.750 63.158 0.00 0.00 0.00 4.40
388 389 2.972505 GACACCACCACACCGCAG 60.973 66.667 0.00 0.00 0.00 5.18
389 390 4.555709 GGACACCACCACACCGCA 62.556 66.667 0.00 0.00 0.00 5.69
392 393 2.590575 CACGGACACCACCACACC 60.591 66.667 0.00 0.00 0.00 4.16
393 394 2.590575 CCACGGACACCACCACAC 60.591 66.667 0.00 0.00 0.00 3.82
394 395 3.084646 ACCACGGACACCACCACA 61.085 61.111 0.00 0.00 0.00 4.17
395 396 2.391724 ATCACCACGGACACCACCAC 62.392 60.000 0.00 0.00 0.00 4.16
396 397 2.144078 ATCACCACGGACACCACCA 61.144 57.895 0.00 0.00 0.00 4.17
397 398 1.671054 CATCACCACGGACACCACC 60.671 63.158 0.00 0.00 0.00 4.61
398 399 1.070786 ACATCACCACGGACACCAC 59.929 57.895 0.00 0.00 0.00 4.16
399 400 1.070615 CACATCACCACGGACACCA 59.929 57.895 0.00 0.00 0.00 4.17
400 401 0.670546 CTCACATCACCACGGACACC 60.671 60.000 0.00 0.00 0.00 4.16
401 402 1.291877 GCTCACATCACCACGGACAC 61.292 60.000 0.00 0.00 0.00 3.67
402 403 1.005037 GCTCACATCACCACGGACA 60.005 57.895 0.00 0.00 0.00 4.02
403 404 2.094659 CGCTCACATCACCACGGAC 61.095 63.158 0.00 0.00 0.00 4.79
404 405 2.261361 CGCTCACATCACCACGGA 59.739 61.111 0.00 0.00 0.00 4.69
405 406 2.094659 GTCGCTCACATCACCACGG 61.095 63.158 0.00 0.00 0.00 4.94
406 407 0.737367 ATGTCGCTCACATCACCACG 60.737 55.000 0.00 0.00 42.62 4.94
407 408 3.143675 ATGTCGCTCACATCACCAC 57.856 52.632 0.00 0.00 42.62 4.16
414 415 4.050934 ACGCCGATGTCGCTCACA 62.051 61.111 0.00 0.00 40.18 3.58
415 416 3.545481 CACGCCGATGTCGCTCAC 61.545 66.667 0.00 0.00 38.18 3.51
416 417 3.567478 AACACGCCGATGTCGCTCA 62.567 57.895 0.00 0.00 38.18 4.26
417 418 2.809601 AACACGCCGATGTCGCTC 60.810 61.111 0.00 0.00 38.18 5.03
418 419 2.835701 ATCAACACGCCGATGTCGCT 62.836 55.000 0.00 0.00 38.18 4.93
419 420 2.452813 ATCAACACGCCGATGTCGC 61.453 57.895 0.00 0.00 38.18 5.19
420 421 1.344837 CATCAACACGCCGATGTCG 59.655 57.895 0.00 0.00 35.37 4.35
421 422 0.739462 TCCATCAACACGCCGATGTC 60.739 55.000 0.00 0.00 37.84 3.06
422 423 0.740868 CTCCATCAACACGCCGATGT 60.741 55.000 0.00 0.00 37.84 3.06
423 424 1.431488 CCTCCATCAACACGCCGATG 61.431 60.000 0.00 0.00 39.00 3.84
424 425 1.153369 CCTCCATCAACACGCCGAT 60.153 57.895 0.00 0.00 0.00 4.18
425 426 2.264480 CCTCCATCAACACGCCGA 59.736 61.111 0.00 0.00 0.00 5.54
426 427 3.499737 GCCTCCATCAACACGCCG 61.500 66.667 0.00 0.00 0.00 6.46
427 428 2.045926 AGCCTCCATCAACACGCC 60.046 61.111 0.00 0.00 0.00 5.68
428 429 3.044059 GCAGCCTCCATCAACACGC 62.044 63.158 0.00 0.00 0.00 5.34
429 430 1.642037 CTGCAGCCTCCATCAACACG 61.642 60.000 0.00 0.00 0.00 4.49
430 431 0.607489 ACTGCAGCCTCCATCAACAC 60.607 55.000 15.27 0.00 0.00 3.32
431 432 0.607217 CACTGCAGCCTCCATCAACA 60.607 55.000 15.27 0.00 0.00 3.33
432 433 1.930908 GCACTGCAGCCTCCATCAAC 61.931 60.000 15.27 0.00 0.00 3.18
433 434 1.676635 GCACTGCAGCCTCCATCAA 60.677 57.895 15.27 0.00 0.00 2.57
434 435 2.045634 GCACTGCAGCCTCCATCA 60.046 61.111 15.27 0.00 0.00 3.07
435 436 3.200593 CGCACTGCAGCCTCCATC 61.201 66.667 15.27 0.00 0.00 3.51
436 437 4.790962 CCGCACTGCAGCCTCCAT 62.791 66.667 15.27 0.00 0.00 3.41
442 443 4.457496 TAGCTCCCGCACTGCAGC 62.457 66.667 15.27 0.00 39.10 5.25
443 444 2.202851 CTAGCTCCCGCACTGCAG 60.203 66.667 13.48 13.48 39.10 4.41
444 445 2.679996 TCTAGCTCCCGCACTGCA 60.680 61.111 1.11 0.00 39.10 4.41
445 446 2.105930 CTCTAGCTCCCGCACTGC 59.894 66.667 0.00 0.00 39.10 4.40
446 447 2.811101 CCTCTAGCTCCCGCACTG 59.189 66.667 0.00 0.00 39.10 3.66
447 448 3.151022 GCCTCTAGCTCCCGCACT 61.151 66.667 0.00 0.00 39.10 4.40
448 449 4.577246 CGCCTCTAGCTCCCGCAC 62.577 72.222 0.00 0.00 40.39 5.34
450 451 4.273257 GACGCCTCTAGCTCCCGC 62.273 72.222 0.00 0.00 40.39 6.13
451 452 2.829003 TGACGCCTCTAGCTCCCG 60.829 66.667 0.00 0.00 40.39 5.14
452 453 1.755008 ACTGACGCCTCTAGCTCCC 60.755 63.158 0.00 0.00 40.39 4.30
453 454 1.435515 CACTGACGCCTCTAGCTCC 59.564 63.158 0.00 0.00 40.39 4.70
454 455 1.226831 GCACTGACGCCTCTAGCTC 60.227 63.158 0.00 0.00 40.39 4.09
455 456 2.888863 GCACTGACGCCTCTAGCT 59.111 61.111 0.00 0.00 40.39 3.32
456 457 2.580867 CGCACTGACGCCTCTAGC 60.581 66.667 0.00 0.00 38.52 3.42
457 458 2.103143 CCGCACTGACGCCTCTAG 59.897 66.667 0.00 0.00 0.00 2.43
458 459 2.360726 TCCGCACTGACGCCTCTA 60.361 61.111 0.00 0.00 0.00 2.43
459 460 4.057428 GTCCGCACTGACGCCTCT 62.057 66.667 0.00 0.00 0.00 3.69
460 461 2.600122 CTAGTCCGCACTGACGCCTC 62.600 65.000 0.00 0.00 40.26 4.70
461 462 2.675423 TAGTCCGCACTGACGCCT 60.675 61.111 0.00 0.00 40.26 5.52
462 463 2.005960 ATCTAGTCCGCACTGACGCC 62.006 60.000 0.00 0.00 40.26 5.68
463 464 0.592754 GATCTAGTCCGCACTGACGC 60.593 60.000 0.00 0.00 40.26 5.19
464 465 1.018148 AGATCTAGTCCGCACTGACG 58.982 55.000 0.00 0.00 40.26 4.35
465 466 2.480416 CCAAGATCTAGTCCGCACTGAC 60.480 54.545 0.00 0.00 33.62 3.51
466 467 1.751351 CCAAGATCTAGTCCGCACTGA 59.249 52.381 0.00 0.00 33.62 3.41
467 468 1.478510 ACCAAGATCTAGTCCGCACTG 59.521 52.381 0.00 0.00 33.62 3.66
468 469 1.751924 GACCAAGATCTAGTCCGCACT 59.248 52.381 12.71 0.00 36.55 4.40
469 470 1.202428 GGACCAAGATCTAGTCCGCAC 60.202 57.143 22.53 6.58 40.65 5.34
470 471 1.112113 GGACCAAGATCTAGTCCGCA 58.888 55.000 22.53 0.00 40.65 5.69
471 472 3.969995 GGACCAAGATCTAGTCCGC 57.030 57.895 22.53 7.41 40.65 5.54
474 475 2.159085 CGGGTTGGACCAAGATCTAGTC 60.159 54.545 7.31 14.62 41.02 2.59
475 476 1.831736 CGGGTTGGACCAAGATCTAGT 59.168 52.381 7.31 0.00 41.02 2.57
476 477 2.101582 CTCGGGTTGGACCAAGATCTAG 59.898 54.545 7.31 0.00 41.02 2.43
477 478 2.108168 CTCGGGTTGGACCAAGATCTA 58.892 52.381 7.31 0.00 41.02 1.98
478 479 0.905357 CTCGGGTTGGACCAAGATCT 59.095 55.000 7.31 0.00 41.02 2.75
479 480 0.744771 GCTCGGGTTGGACCAAGATC 60.745 60.000 7.31 0.33 41.02 2.75
480 481 1.299976 GCTCGGGTTGGACCAAGAT 59.700 57.895 7.31 0.00 41.02 2.40
481 482 2.144078 TGCTCGGGTTGGACCAAGA 61.144 57.895 7.31 0.50 41.02 3.02
482 483 1.966451 GTGCTCGGGTTGGACCAAG 60.966 63.158 7.31 0.00 41.02 3.61
483 484 2.112297 GTGCTCGGGTTGGACCAA 59.888 61.111 1.69 1.69 41.02 3.67
484 485 4.308458 CGTGCTCGGGTTGGACCA 62.308 66.667 0.00 0.00 41.02 4.02
485 486 2.798148 AATCGTGCTCGGGTTGGACC 62.798 60.000 8.49 0.00 37.60 4.46
486 487 0.953960 AAATCGTGCTCGGGTTGGAC 60.954 55.000 8.49 0.00 37.69 4.02
487 488 0.953471 CAAATCGTGCTCGGGTTGGA 60.953 55.000 8.49 0.00 37.69 3.53
488 489 1.501741 CAAATCGTGCTCGGGTTGG 59.498 57.895 8.49 0.00 37.69 3.77
489 490 1.501741 CCAAATCGTGCTCGGGTTG 59.498 57.895 8.49 11.93 37.69 3.77
490 491 1.674322 CCCAAATCGTGCTCGGGTT 60.674 57.895 8.49 1.38 37.69 4.11
491 492 2.046314 CCCAAATCGTGCTCGGGT 60.046 61.111 8.49 0.00 37.69 5.28
492 493 2.046314 ACCCAAATCGTGCTCGGG 60.046 61.111 8.49 3.69 43.02 5.14
493 494 2.106683 GGACCCAAATCGTGCTCGG 61.107 63.158 8.49 0.00 37.69 4.63
494 495 2.106683 GGGACCCAAATCGTGCTCG 61.107 63.158 5.33 0.81 38.55 5.03
495 496 1.026718 CAGGGACCCAAATCGTGCTC 61.027 60.000 14.60 0.00 0.00 4.26
496 497 1.002134 CAGGGACCCAAATCGTGCT 60.002 57.895 14.60 0.00 0.00 4.40
497 498 2.046285 CCAGGGACCCAAATCGTGC 61.046 63.158 14.60 0.00 0.00 5.34
498 499 1.378514 CCCAGGGACCCAAATCGTG 60.379 63.158 14.60 0.09 0.00 4.35
499 500 1.848886 GACCCAGGGACCCAAATCGT 61.849 60.000 14.54 0.53 0.00 3.73
500 501 1.077716 GACCCAGGGACCCAAATCG 60.078 63.158 14.54 0.00 0.00 3.34
501 502 1.077716 CGACCCAGGGACCCAAATC 60.078 63.158 14.54 3.67 0.00 2.17
502 503 1.850755 ACGACCCAGGGACCCAAAT 60.851 57.895 14.54 0.00 0.00 2.32
503 504 2.448931 ACGACCCAGGGACCCAAA 60.449 61.111 14.54 0.00 0.00 3.28
504 505 3.246112 CACGACCCAGGGACCCAA 61.246 66.667 14.54 0.00 0.00 4.12
507 508 3.703127 GTCCACGACCCAGGGACC 61.703 72.222 14.54 2.12 44.21 4.46
508 509 4.065281 CGTCCACGACCCAGGGAC 62.065 72.222 14.54 4.81 46.01 4.46
509 510 4.608774 ACGTCCACGACCCAGGGA 62.609 66.667 14.54 0.00 43.02 4.20
510 511 3.622826 AACGTCCACGACCCAGGG 61.623 66.667 2.85 2.85 43.02 4.45
511 512 2.357034 CAACGTCCACGACCCAGG 60.357 66.667 6.03 0.00 43.02 4.45
512 513 3.041940 GCAACGTCCACGACCCAG 61.042 66.667 6.03 0.00 43.02 4.45
513 514 4.953868 CGCAACGTCCACGACCCA 62.954 66.667 6.03 0.00 43.02 4.51
514 515 4.651008 TCGCAACGTCCACGACCC 62.651 66.667 6.03 0.00 43.02 4.46
515 516 3.103911 CTCGCAACGTCCACGACC 61.104 66.667 6.03 0.00 43.02 4.79
516 517 3.103911 CCTCGCAACGTCCACGAC 61.104 66.667 6.03 0.00 43.02 4.34
518 519 2.884087 ATAGCCTCGCAACGTCCACG 62.884 60.000 0.00 0.00 46.33 4.94
519 520 0.739813 AATAGCCTCGCAACGTCCAC 60.740 55.000 0.00 0.00 0.00 4.02
520 521 0.036765 AAATAGCCTCGCAACGTCCA 60.037 50.000 0.00 0.00 0.00 4.02
521 522 0.373716 CAAATAGCCTCGCAACGTCC 59.626 55.000 0.00 0.00 0.00 4.79
522 523 0.247695 GCAAATAGCCTCGCAACGTC 60.248 55.000 0.00 0.00 37.23 4.34
523 524 1.794222 GCAAATAGCCTCGCAACGT 59.206 52.632 0.00 0.00 37.23 3.99
524 525 4.670606 GCAAATAGCCTCGCAACG 57.329 55.556 0.00 0.00 37.23 4.10
541 542 1.513158 CTAGTCACGCCACTCCAGG 59.487 63.158 0.00 0.00 0.00 4.45
542 543 1.153745 GCTAGTCACGCCACTCCAG 60.154 63.158 0.00 0.00 0.00 3.86
543 544 1.606601 AGCTAGTCACGCCACTCCA 60.607 57.895 0.00 0.00 0.00 3.86
544 545 1.153745 CAGCTAGTCACGCCACTCC 60.154 63.158 0.00 0.00 0.00 3.85
545 546 1.807573 GCAGCTAGTCACGCCACTC 60.808 63.158 0.00 0.00 0.00 3.51
546 547 1.821061 AAGCAGCTAGTCACGCCACT 61.821 55.000 0.00 0.00 0.00 4.00
547 548 1.355066 GAAGCAGCTAGTCACGCCAC 61.355 60.000 0.00 0.00 0.00 5.01
548 549 1.079819 GAAGCAGCTAGTCACGCCA 60.080 57.895 0.00 0.00 0.00 5.69
549 550 1.811679 GGAAGCAGCTAGTCACGCC 60.812 63.158 0.00 0.00 0.00 5.68
550 551 2.161486 CGGAAGCAGCTAGTCACGC 61.161 63.158 0.00 0.00 0.00 5.34
551 552 1.517257 CCGGAAGCAGCTAGTCACG 60.517 63.158 0.00 0.00 0.00 4.35
552 553 0.737715 CACCGGAAGCAGCTAGTCAC 60.738 60.000 9.46 0.00 0.00 3.67
553 554 1.591703 CACCGGAAGCAGCTAGTCA 59.408 57.895 9.46 0.00 0.00 3.41
554 555 1.811679 GCACCGGAAGCAGCTAGTC 60.812 63.158 9.46 0.00 0.00 2.59
555 556 2.266055 GCACCGGAAGCAGCTAGT 59.734 61.111 9.46 0.00 0.00 2.57
556 557 2.512515 GGCACCGGAAGCAGCTAG 60.513 66.667 21.55 0.00 0.00 3.42
557 558 4.451150 CGGCACCGGAAGCAGCTA 62.451 66.667 21.55 0.00 35.56 3.32
574 575 4.241555 ATCACGATCAGGGCCGCC 62.242 66.667 0.00 0.00 0.00 6.13
575 576 2.969238 CATCACGATCAGGGCCGC 60.969 66.667 0.00 0.00 0.00 6.53
576 577 2.280389 CCATCACGATCAGGGCCG 60.280 66.667 0.00 0.00 0.00 6.13
577 578 2.592861 GCCATCACGATCAGGGCC 60.593 66.667 0.00 0.00 38.70 5.80
578 579 0.820891 ATTGCCATCACGATCAGGGC 60.821 55.000 0.51 0.51 44.82 5.19
579 580 0.949397 CATTGCCATCACGATCAGGG 59.051 55.000 0.00 0.00 0.00 4.45
580 581 0.949397 CCATTGCCATCACGATCAGG 59.051 55.000 0.00 0.00 0.00 3.86
581 582 1.871676 CTCCATTGCCATCACGATCAG 59.128 52.381 0.00 0.00 0.00 2.90
582 583 1.475571 CCTCCATTGCCATCACGATCA 60.476 52.381 0.00 0.00 0.00 2.92
583 584 1.233019 CCTCCATTGCCATCACGATC 58.767 55.000 0.00 0.00 0.00 3.69
584 585 0.548031 ACCTCCATTGCCATCACGAT 59.452 50.000 0.00 0.00 0.00 3.73
585 586 0.327924 AACCTCCATTGCCATCACGA 59.672 50.000 0.00 0.00 0.00 4.35
586 587 0.452987 CAACCTCCATTGCCATCACG 59.547 55.000 0.00 0.00 0.00 4.35
587 588 0.819582 CCAACCTCCATTGCCATCAC 59.180 55.000 0.00 0.00 0.00 3.06
588 589 0.324552 CCCAACCTCCATTGCCATCA 60.325 55.000 0.00 0.00 0.00 3.07
589 590 1.679559 GCCCAACCTCCATTGCCATC 61.680 60.000 0.00 0.00 0.00 3.51
590 591 1.686800 GCCCAACCTCCATTGCCAT 60.687 57.895 0.00 0.00 0.00 4.40
591 592 2.283821 GCCCAACCTCCATTGCCA 60.284 61.111 0.00 0.00 0.00 4.92
592 593 2.283821 TGCCCAACCTCCATTGCC 60.284 61.111 0.00 0.00 0.00 4.52
593 594 2.353610 CCTGCCCAACCTCCATTGC 61.354 63.158 0.00 0.00 0.00 3.56
594 595 0.682209 CTCCTGCCCAACCTCCATTG 60.682 60.000 0.00 0.00 0.00 2.82
595 596 1.693640 CTCCTGCCCAACCTCCATT 59.306 57.895 0.00 0.00 0.00 3.16
596 597 2.988839 GCTCCTGCCCAACCTCCAT 61.989 63.158 0.00 0.00 0.00 3.41
597 598 3.650950 GCTCCTGCCCAACCTCCA 61.651 66.667 0.00 0.00 0.00 3.86
598 599 3.334054 AGCTCCTGCCCAACCTCC 61.334 66.667 0.00 0.00 40.80 4.30
599 600 2.045536 CAGCTCCTGCCCAACCTC 60.046 66.667 0.00 0.00 40.80 3.85
600 601 2.464403 AACAGCTCCTGCCCAACCT 61.464 57.895 0.00 0.00 40.80 3.50
601 602 2.116125 AACAGCTCCTGCCCAACC 59.884 61.111 0.00 0.00 40.80 3.77
602 603 2.270986 CCAACAGCTCCTGCCCAAC 61.271 63.158 0.00 0.00 40.80 3.77
603 604 2.115910 CCAACAGCTCCTGCCCAA 59.884 61.111 0.00 0.00 40.80 4.12
604 605 3.177884 ACCAACAGCTCCTGCCCA 61.178 61.111 0.00 0.00 40.80 5.36
605 606 2.674380 CACCAACAGCTCCTGCCC 60.674 66.667 0.00 0.00 40.80 5.36
606 607 3.368571 GCACCAACAGCTCCTGCC 61.369 66.667 0.00 0.00 40.80 4.85
607 608 2.282040 AGCACCAACAGCTCCTGC 60.282 61.111 0.00 0.00 38.01 4.85
612 613 2.282040 GCCTGAGCACCAACAGCT 60.282 61.111 0.00 0.00 46.82 4.24
613 614 3.368571 GGCCTGAGCACCAACAGC 61.369 66.667 0.00 0.00 42.56 4.40
614 615 2.674380 GGGCCTGAGCACCAACAG 60.674 66.667 0.84 0.00 42.56 3.16
615 616 4.641645 CGGGCCTGAGCACCAACA 62.642 66.667 5.28 0.00 40.33 3.33
629 630 4.101448 CTTCCACCTCCAGCCGGG 62.101 72.222 2.18 0.00 38.37 5.73
630 631 2.370445 ATCTTCCACCTCCAGCCGG 61.370 63.158 0.00 0.00 0.00 6.13
631 632 1.153289 CATCTTCCACCTCCAGCCG 60.153 63.158 0.00 0.00 0.00 5.52
632 633 1.225704 CCATCTTCCACCTCCAGCC 59.774 63.158 0.00 0.00 0.00 4.85
633 634 0.107459 GTCCATCTTCCACCTCCAGC 60.107 60.000 0.00 0.00 0.00 4.85
634 635 1.209019 CAGTCCATCTTCCACCTCCAG 59.791 57.143 0.00 0.00 0.00 3.86
635 636 1.279496 CAGTCCATCTTCCACCTCCA 58.721 55.000 0.00 0.00 0.00 3.86
636 637 1.065854 CACAGTCCATCTTCCACCTCC 60.066 57.143 0.00 0.00 0.00 4.30
637 638 1.625818 ACACAGTCCATCTTCCACCTC 59.374 52.381 0.00 0.00 0.00 3.85
638 639 1.734655 ACACAGTCCATCTTCCACCT 58.265 50.000 0.00 0.00 0.00 4.00
639 640 2.568623 AACACAGTCCATCTTCCACC 57.431 50.000 0.00 0.00 0.00 4.61
640 641 2.814336 GGAAACACAGTCCATCTTCCAC 59.186 50.000 0.00 0.00 35.05 4.02
641 642 2.711009 AGGAAACACAGTCCATCTTCCA 59.289 45.455 0.00 0.00 37.65 3.53
642 643 3.425162 AGGAAACACAGTCCATCTTCC 57.575 47.619 0.00 0.00 37.65 3.46
643 644 4.023707 CACAAGGAAACACAGTCCATCTTC 60.024 45.833 0.00 0.00 37.65 2.87
644 645 3.885297 CACAAGGAAACACAGTCCATCTT 59.115 43.478 0.00 0.00 37.65 2.40
645 646 3.480470 CACAAGGAAACACAGTCCATCT 58.520 45.455 0.00 0.00 37.65 2.90
646 647 2.030805 GCACAAGGAAACACAGTCCATC 60.031 50.000 0.00 0.00 37.65 3.51
647 648 1.956477 GCACAAGGAAACACAGTCCAT 59.044 47.619 0.00 0.00 37.65 3.41
648 649 1.388547 GCACAAGGAAACACAGTCCA 58.611 50.000 0.00 0.00 37.65 4.02
649 650 0.307760 CGCACAAGGAAACACAGTCC 59.692 55.000 0.00 0.00 35.17 3.85
650 651 0.307760 CCGCACAAGGAAACACAGTC 59.692 55.000 0.00 0.00 0.00 3.51
651 652 1.101049 CCCGCACAAGGAAACACAGT 61.101 55.000 0.00 0.00 0.00 3.55
652 653 1.654220 CCCGCACAAGGAAACACAG 59.346 57.895 0.00 0.00 0.00 3.66
653 654 2.485795 GCCCGCACAAGGAAACACA 61.486 57.895 0.00 0.00 0.00 3.72
654 655 2.193536 AGCCCGCACAAGGAAACAC 61.194 57.895 0.00 0.00 0.00 3.32
655 656 2.192861 CAGCCCGCACAAGGAAACA 61.193 57.895 0.00 0.00 0.00 2.83
656 657 2.644992 CAGCCCGCACAAGGAAAC 59.355 61.111 0.00 0.00 0.00 2.78
657 658 3.294493 GCAGCCCGCACAAGGAAA 61.294 61.111 0.00 0.00 41.79 3.13
668 669 2.825836 CAGGAACATCGGCAGCCC 60.826 66.667 5.63 0.00 0.00 5.19
669 670 3.512516 GCAGGAACATCGGCAGCC 61.513 66.667 0.00 0.00 0.00 4.85
670 671 2.334946 TTGCAGGAACATCGGCAGC 61.335 57.895 0.00 0.00 37.59 5.25
671 672 0.957395 AGTTGCAGGAACATCGGCAG 60.957 55.000 7.64 0.00 37.59 4.85
672 673 0.537143 AAGTTGCAGGAACATCGGCA 60.537 50.000 7.64 0.00 36.98 5.69
673 674 0.598065 AAAGTTGCAGGAACATCGGC 59.402 50.000 7.64 0.00 36.98 5.54
674 675 3.181497 CCATAAAGTTGCAGGAACATCGG 60.181 47.826 7.64 0.00 36.98 4.18
675 676 3.440173 ACCATAAAGTTGCAGGAACATCG 59.560 43.478 7.64 0.00 36.98 3.84
676 677 4.458989 TGACCATAAAGTTGCAGGAACATC 59.541 41.667 7.64 0.00 36.98 3.06
677 678 4.406456 TGACCATAAAGTTGCAGGAACAT 58.594 39.130 7.64 0.00 36.98 2.71
678 679 3.826524 TGACCATAAAGTTGCAGGAACA 58.173 40.909 7.64 0.00 36.98 3.18
679 680 4.458989 TCATGACCATAAAGTTGCAGGAAC 59.541 41.667 0.00 0.00 34.40 3.62
680 681 4.661222 TCATGACCATAAAGTTGCAGGAA 58.339 39.130 0.00 0.00 0.00 3.36
681 682 4.299586 TCATGACCATAAAGTTGCAGGA 57.700 40.909 0.00 0.00 0.00 3.86
682 683 5.105635 ACAATCATGACCATAAAGTTGCAGG 60.106 40.000 0.00 0.00 0.00 4.85
683 684 5.957798 ACAATCATGACCATAAAGTTGCAG 58.042 37.500 0.00 0.00 0.00 4.41
684 685 5.981088 ACAATCATGACCATAAAGTTGCA 57.019 34.783 0.00 0.00 0.00 4.08
685 686 7.698130 GTCTAACAATCATGACCATAAAGTTGC 59.302 37.037 0.00 0.00 0.00 4.17
686 687 8.950210 AGTCTAACAATCATGACCATAAAGTTG 58.050 33.333 0.00 0.00 0.00 3.16
687 688 8.950210 CAGTCTAACAATCATGACCATAAAGTT 58.050 33.333 0.00 0.00 0.00 2.66
688 689 8.103305 ACAGTCTAACAATCATGACCATAAAGT 58.897 33.333 0.00 0.00 0.00 2.66
689 690 8.498054 ACAGTCTAACAATCATGACCATAAAG 57.502 34.615 0.00 0.00 0.00 1.85
690 691 9.378551 GTACAGTCTAACAATCATGACCATAAA 57.621 33.333 0.00 0.00 0.00 1.40
691 692 8.758829 AGTACAGTCTAACAATCATGACCATAA 58.241 33.333 0.00 0.00 0.00 1.90
692 693 8.197439 CAGTACAGTCTAACAATCATGACCATA 58.803 37.037 0.00 0.00 0.00 2.74
693 694 7.044181 CAGTACAGTCTAACAATCATGACCAT 58.956 38.462 0.00 0.00 0.00 3.55
694 695 6.398095 CAGTACAGTCTAACAATCATGACCA 58.602 40.000 0.00 0.00 0.00 4.02
695 696 5.292101 GCAGTACAGTCTAACAATCATGACC 59.708 44.000 0.00 0.00 0.00 4.02
696 697 6.102663 AGCAGTACAGTCTAACAATCATGAC 58.897 40.000 0.00 0.00 0.00 3.06
697 698 6.153510 AGAGCAGTACAGTCTAACAATCATGA 59.846 38.462 0.00 0.00 0.00 3.07
698 699 6.336566 AGAGCAGTACAGTCTAACAATCATG 58.663 40.000 0.00 0.00 0.00 3.07
699 700 6.537453 AGAGCAGTACAGTCTAACAATCAT 57.463 37.500 0.00 0.00 0.00 2.45
700 701 5.984695 AGAGCAGTACAGTCTAACAATCA 57.015 39.130 0.00 0.00 0.00 2.57
701 702 6.159988 ACAAGAGCAGTACAGTCTAACAATC 58.840 40.000 0.00 0.00 0.00 2.67
766 767 1.811266 ACGATCACACGCATGCTCC 60.811 57.895 17.13 0.00 36.70 4.70
833 834 1.058428 CAGCCCAGGGAGATCATGGA 61.058 60.000 10.89 0.00 36.09 3.41
897 898 2.248248 AGGGAGAACAGATCACAACGA 58.752 47.619 0.00 0.00 0.00 3.85
898 899 2.751166 AGGGAGAACAGATCACAACG 57.249 50.000 0.00 0.00 0.00 4.10
901 902 5.960811 AGAAGATTAGGGAGAACAGATCACA 59.039 40.000 0.00 0.00 0.00 3.58
908 909 4.357325 AGCTGAGAAGATTAGGGAGAACA 58.643 43.478 0.00 0.00 0.00 3.18
936 937 1.361197 TGGTCAGGGGAGTCTGATACA 59.639 52.381 0.00 0.00 44.43 2.29
951 952 1.425066 ACAAAGGGATTGAGCTGGTCA 59.575 47.619 5.28 5.28 41.85 4.02
1291 1332 0.605319 AACATGCCGACGATGGTGTT 60.605 50.000 0.00 0.00 0.00 3.32
1349 1390 1.439228 CACTCTGGATCGCCGTGAT 59.561 57.895 0.00 0.00 41.06 3.06
1406 1447 0.391661 GAGCTCTGGCGAAATGGTGA 60.392 55.000 6.43 0.00 44.37 4.02
1476 1517 3.193757 CGGAAGATCCCGTCGACA 58.806 61.111 17.16 0.00 44.23 4.35
1713 1759 1.983224 CAGGAAAGAAGGGAGCGGA 59.017 57.895 0.00 0.00 0.00 5.54
1924 1973 1.038130 CGGGGAGTCGAAGGAGATGT 61.038 60.000 0.00 0.00 0.00 3.06
1970 2022 3.228017 TCCACGAGTTGGCACCGA 61.228 61.111 9.59 0.00 46.47 4.69
2073 2208 0.693092 CCGAGGACCCCCTAATCCAA 60.693 60.000 0.00 0.00 44.53 3.53
2240 2380 2.399580 GAGGAGGCTAGGGTTACACAT 58.600 52.381 0.00 0.00 0.00 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.